| 2011-05-20 |
Robert Buels | throw out old test that uses Test::XML::Simple. we...
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commit | commitdiff | tree |
| 2011-05-16 |
Robert Buels | warning squash: make agp_file and tpf_file return empty...
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commit | commitdiff | tree |
| 2011-04-15 |
Robert Buels | quiet mode should not squelch complaints of missing...
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commit | commitdiff | tree |
| 2011-04-12 |
Robert Buels | cope with BAC_clone having "obsolete" appended to its...
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commit | commitdiff | tree |
| 2011-04-12 |
Robert Buels | disable vector screen submission errors
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commit | commitdiff | tree |
| 2011-04-06 |
Robert Buels | skip roe genbank records that could not be connected...
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commit | commitdiff | tree |
| 2011-02-24 |
Robert Buels | tweak end-sequence loader POD
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commit | commitdiff | tree |
| 2010-10-20 |
Robert Buels | corrected query for bac clone cvterms so that obsoleted...
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commit | commitdiff | tree |
| 2010-07-30 |
Robert Buels | tweaked roe_sync tarball generation to not include...
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commit | commitdiff | tree |
| 2010-07-28 |
Robert Buels | redid clone_feature updating sql, see #1094
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commit | commitdiff | tree |
| 2010-07-19 |
Robert Buels | bugfix to bac assembler phrap contig dumping, fixed...
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commit | commitdiff | tree |
| 2010-07-19 |
Robert Buels | added -k options to bac assembler to keep the assembly...
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | rename bac assembler script to reflect what it is actually...
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | tweak wording in bac assembly readme
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | added README.txt inside bac assembly tarfile
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | bugfix to precluster and contig name leading zeroes
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | tweak file naming inside bac assembly tarfile
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | bac assembler, added some leading zeros to contig and...
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | bac assembler, fix bad bug with phrap consensus seq...
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | removed unnecessary lingering variable
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | bac assembler now always assembles for all chromosomes...
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | tweak directory structure of bac assembly products
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commit | commitdiff | tree |
| 2010-07-16 |
Robert Buels | changed bac assembler so it makes a tarfile of the...
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commit | commitdiff | tree |
| 2010-07-15 |
Robert Buels | added file to bac contigging with some metadata about...
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commit | commitdiff | tree |
| 2010-07-15 |
Robert Buels | bac assembler should only make assembled contig files...
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commit | commitdiff | tree |
| 2010-07-15 |
Robert Buels | make bac assembler go through the chromosomes in numerical...
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commit | commitdiff | tree |
| 2010-07-15 |
Robert Buels | more work on phrap contigs output dir, now membership...
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commit | commitdiff | tree |
| 2010-07-15 |
Robert Buels | various work and refactoring on bac assembly script...
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commit | commitdiff | tree |
| 2010-07-15 |
Robert Buels | added per-chromosome consensus sequence sets, containing...
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commit | commitdiff | tree |
| 2010-07-14 |
Robert Buels | update bac assembler script to use redone precluster...
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commit | commitdiff | tree |
| 2010-07-14 |
Robert Buels | bugfix to bac assembler sequence edit compensation
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commit | commitdiff | tree |
| 2010-07-14 |
Robert Buels | tweak bac assembler simplification settings
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commit | commitdiff | tree |
| 2010-07-13 |
Robert Buels | added -A option to bac assembler, which saves precluster...
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commit | commitdiff | tree |
| 2010-07-12 |
Robert Buels | added hack to cope with phrap sequence edits in bac...
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commit | commitdiff | tree |
| 2010-07-12 |
Robert Buels | expanded comment about AGP complimented sequences in...
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commit | commitdiff | tree |
| 2010-07-12 |
Robert Buels | bugfix to bac agp generator tempfile handling in new...
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commit | commitdiff | tree |
| 2010-07-12 |
Robert Buels | add unmapped bacs to bac contig generation
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commit | commitdiff | tree |
| 2010-07-12 |
Robert Buels | bac contig generator now uses phrap's golden path for...
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commit | commitdiff | tree |
| 2010-07-09 |
Robert Buels | in bac assembler, fix bug in component coordinates...
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commit | commitdiff | tree |
| 2010-07-09 |
Robert Buels | add explicit dbh disconnect to squash warning in bac...
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commit | commitdiff | tree |
| 2010-07-09 |
Robert Buels | in bac assembler, initialize Cview code earlier so...
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commit | commitdiff | tree |
| 2010-07-09 |
Robert Buels | force verbose backtraces in bac assembler
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commit | commitdiff | tree |
| 2010-07-07 |
Robert Buels | added verbose setting to tomato agp validator
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commit | commitdiff | tree |
| 2010-07-07 |
Robert Buels | remove db conn verbose invocation
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commit | commitdiff | tree |
| 2010-07-07 |
Robert Buels | roe_sync data test syntax error, silly
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commit | commitdiff | tree |
| 2010-07-07 |
Robert Buels | fixed roe_sync test, needed a stable sort order
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commit | commitdiff | tree |
| 2010-07-07 |
Robert Buels | give up trying to count tests in t/bacsubmission.t...
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commit | commitdiff | tree |
| 2010-07-07 |
Robert Buels | removed unecessary Bio::Tools::RepeatMasker use
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commit | commitdiff | tree |
| 2010-07-07 |
Robert Buels | stray characters
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commit | commitdiff | tree |
| 2010-07-07 |
Robert Buels | increase allowable vector sequence in submitted BACs...
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commit | commitdiff | tree |
| 2010-07-01 |
Robert Buels | fix usage message in genomic end seqs loader
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commit | commitdiff | tree |
| 2010-07-01 |
Robert Buels | normalized bac contact info config
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commit | commitdiff | tree |
| 2010-07-01 |
Robert Buels | removed bac pipeline warning about missing .qual file.
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commit | commitdiff | tree |
| 2010-07-01 |
Robert Buels | added data test to check the syncing of roe bac data
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commit | commitdiff | tree |
| 2010-06-02 |
Robert Buels | added missing load for CXGN::VHost in tpf/agp module
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commit | commitdiff | tree |
| 2010-05-18 |
Robert Buels | bugfix to potato bac loader, now uses all refs in a...
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commit | commitdiff | tree |
| 2010-05-18 |
Robert Buels | potato mirror script no longer dies if cannot infer...
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commit | commitdiff | tree |
| 2010-05-18 |
Robert Buels | no longer using separate cron script to publish bac...
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commit | commitdiff | tree |
| 2010-05-18 |
Robert Buels | moved potato bac mirroring script in here
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commit | commitdiff | tree |
