| commit | 5769348b999bcb7cc8f995ed2801a17d5f0561f0 | |
| author | Robert Buels <rmb32@cornell.edu> | |
| Mon, 12 Jul 2010 17:16:08 +0000 (12 13:16 -0400) | ||
| committer | Robert Buels <rmb32@cornell.edu> | |
| Mon, 12 Jul 2010 17:16:08 +0000 (12 13:16 -0400) | ||
| tree | 82e6bf0f10df6d097be0206186fe62a1e4b57306 | treesnapshot (tar.gz zip) |
| parent | 3cce10af12216ecc0fbbabae6aeae6c19b438303 | commitdiff |
added hack to cope with phrap sequence edits in bac assembler.
these are small (fewer than 10 bases), and very difficult to represent
in the AGP, so for now it is just ignoring them and clamping the
coordinates if component coordinates go beyond the end of a member
sequence.
these are small (fewer than 10 bases), and very difficult to represent
in the AGP, so for now it is just ignoring them and clamping the
coordinates if component coordinates go beyond the end of a member
sequence.
| scripts/old/bsub_generate_agp.pl | diffblobblamehistory |