repo.or.cz
/
trakem2.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
Removed DisplayCanvas.setDrawingColor(int,int,boolean) since it exclusively
2012-09-01
St
e
ph
a
n
Saal
f
eld
Remo
v
e
d Displ
a
y
Canvas
.
setD
r
awingColo
r
(int,int,boolea
n
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stepha
n
Saalfeld
M
erge bra
n
c
h
'master
'
of ssh
:
//repo
.
o
r
.
cz/srv/git
/
t
r
akem2
commit
|
commitdiff
|
tree
2012-08-31
S
t
ephan Sa
a
lfeld
added experimental local contr
a
st
enhancer Robust
N
ormal
i
z
eLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan
S
a
alfeld
removed obsolete choice f
r
om align layers dialo
g
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
split e
l
astic m
o
ntage
d
ialo
g
f
o
r block ma
t
ching an
d
u
s
e
commit
|
commitdiff
|
tree
2012-06-26
Step
h
an
Saalfeld
Merge branc
h
'master' of ssh://repo
.
o
r
.
cz/srv/gi
t
/
trakem2
commit
|
commitdiff
|
tree
2012-06-26
Step
h
an Saalfeld
use and do not ig
n
ore alpha in helper
method
commit
|
commitdiff
|
tree
2012-06-21
Step
h
an
Saalfeld
u
s
e the new sequent
i
al
d
ialogs in "montage" for a
s
el
e
ction
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
S
tepha
n
Sa
a
lfe
l
d
Merge b
r
anch '
m
aster' of ssh://repo
.
or
.
c
z/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
St
e
phan Saalfeld
fi
x
ed
range
check in lay
e
r ali
g
n
ment
commit
|
commitdiff
|
tree
2012-06-14
Stephan S
a
alfeld
fixed condition chec
k
in Align Layers for regularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
Mer
g
e branch 'mast
e
r' into
r
e
gul
a
rize
d
-affine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do not consider dis
c
onnected til
e
s
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan Saalf
e
l
d
Merge branch 'reg
u
larized-a
f
fine' of
s
sh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
S
tephan
S
aa
l
f
eld
pre-align graphs and match only over
l
a
pping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-a
l
ign graphs and
m
atc
h
only
o
verlapping t
i
les
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan Saalfeld
initialize Ti
l
e mo
d
els and not
o
nly patche
s
in alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan
S
aalfeld
chang
e
d alignGrap
h
s input
c
o
l
lections from
Set
t
o It
e
rable
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
make sure that
s
t
atic param
e
ters do not overrid
e
each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan
Saalfel
d
r
emove spurious import
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saa
l
feld
workaround Oracl
e
javac
generi
c
s issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
a
a
lfeld
multi-layer-mo
s
aic
u
s
es Para
m
/Pa
r
amOptimize
.
set
u
p(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Steph
a
n S
a
alfeld
mon
t
age
l
ayers uses ParamOptimi
z
e
.
setup i
n
ste
a
d
of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan S
a
alfeld
do not f
i
x a ra
n
d
om tile if none i
s
fixed
commit
|
commitdiff
|
tree
2012-05-29
Step
h
an Sa
a
lfeld
Condensed
.
mail
m
ap
commit
|
commitdiff
|
tree
2012-05-29
S
t
ephan S
a
a
l
f
e
l
d
Adde
d
.
ma
i
l
ma
p
commit
|
commitdiff
|
tree
2012-05-21
Stephan S
a
alfeld
Merge branch
'mast
e
r' int
o
r
egularized-aff
i
ne
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saalfel
d
added
*
None* field
t
o la
y
er range reference
selection
commit
|
commitdiff
|
tree
2012-05-21
Steph
a
n Saalfeld
split Align
.
ParamO
p
t
imize dialogs in pieces th
a
t
fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saalfeld
added Gene
r
icAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
S
teph
a
n
S
aalf
e
ld
genera
l
ized
A
bstrac
t
AffineTile2D
g
e
n
eric p
a
rameter
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalfeld
track refa
c
torin
g
in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Sa
a
lfe
l
d
added r
e
gularized aff
i
ne layer
alignm
e
nt
,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfeld
fixed
c
reateIm
a
ge(): use pr
e
multiplied
r
as
t
er
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfe
l
d
do not print the mipmap scale
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan
S
aal
f
eld
for now, do not use pre-multi
p
l
ied alph
a
sinc
e
it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfel
d
Fixed wrong
p
ainting of Patches when using a do
w
nsam
p
ler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saa
l
f
eld
Do
w
nsamplerMipMap
s
now consiste
n
tly uses co
m
bined downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
e
phan Saalfeld
fixed Down
s
amplerMipMaps blendi
n
g merged alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
D
o
wnsampler test
s
till
s
h
o
ws
it being significantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Saalfeld
Fix
e
d
Downsampler: range
check in byte conversion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
Saa
l
feld
M
e
rge branc
h
'inte
g
ral' of ssh://repo
.
o
r
.
c
z
/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan
Saalfeld
a
dded missing package to F
a
kefile
commit
|
commitdiff
|
tree
2012-03-08
S
te
p
han Saalfeld
M
e
r
ge branch 'master' of
ssh://re
p
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Steph
a
n Saalfeld
fix local sc
a
le estimate
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan Saalfe
l
d
added
g
etLocalScale(x,y)
m
e
thod to Patc
h
commit
|
commitdiff
|
tree
2012-03-07
S
t
e
phan Saa
l
feld
patch does not pr
o
p
a
g
a
te NonInvertibleMode
l
Ex
c
eptio
n
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
M
e
rge bra
n
ch
'master' of
s
s
h://repo
.
or
.
cz/s
r
v/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added methods to fet
c
h the closest triangle
o
f a
t
ransform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
S
t
ephan Saalfeld
in th
e
middle of
.
.
.
amend with
final commit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saal
f
eld
demonst
r
a
te byte
c
onve
r
si
o
n in an extra
loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan
Saalfeld
M
e
rge
b
r
an
c
h
'integral'
of ssh://repo
.
or
.
cz/srv/gi
t
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
S
tephan Saalfeld
D
o
w
nsampler finished
.
I have tested several variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saalfeld
e
xperima
n
tal commit:
commit
|
commitdiff
|
tree
2012-02-23
Stephan Sa
a
lfeld
M
e
rge bra
n
ch 'integral' of ssh://r
e
po
.
or
.
cz/sr
v
/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan S
a
alfeld
Down
s
ampler w
i
th
alpha
-
channels re
n
der
i
ng
into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Ste
p
h
an
S
aalfeld
Merge branch 'master' of ssh:/
/
repo
.
o
r
.
cz/srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2012-02-22
S
tephan Saalfeld
set interpolation mod
e
to actually
interp
o
late
m
asks
commit
|
commitdiff
|
tree
2011-10-01
Stephan Saal
f
eld
make IJ
.
l
og to Utils
.
log in E
l
asticLay
e
r
A
lignmen
t
commit
|
commitdiff
|
tree
2011-08-10
Stepha
n
Saal
f
eld
u
s
e
MovingLeastS
q
uaresTransfor
m
2
in Elastic
L
a
y
erAlignment
commit
|
commitdiff
|
tree
2011-08-10
Ste
p
h
a
n Saalfeld
u
s
e
Mov
i
ng
L
e
astSq
u
aresTransform2 in Elas
t
i
c
Montage
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saa
l
feld
use MovingL
e
astSquaresT
r
ansfo
r
m
2
for warpin
g
in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
Ste
p
han Saa
l
fe
l
d
use M
o
vi
n
gLea
s
tSquaresTrans
f
orm2 in NonLinear
T
ransformMod
e
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
Added Mo
v
ingLeas
t
Square
s
Transform2 extending
commit
|
commitdiff
|
tree
2011-08-07
Steph
a
n Saalfeld
Elasti
c
L
ayerAlig
n
m
ent:
Wh
e
n
tr
a
nsferring layer transformatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
S
t
ephan Saalfeld
flush cache between layer expor
t
s (the cache i
s
otherwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan
S
a
a
l
feld
free
m
emory b
e
fore
ru
n
ning mem
o
ry demandin
g
tasks
i
n
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
S
te
p
ha
n
Saalfeld
fixed bug in line
a
rL
a
yerAlignment, calculate and a
p
ply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stephan
Saalfel
d
fl
u
sh im
a
ge cache memory be
f
ore
d
o
i
ng a
m
ontage
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfeld
Elas
t
icMontage:
commit
|
commitdiff
|
tree
2011-06-29
Stepha
n
Saalfeld
Mer
g
e branch 'mas
t
er'
i
nt
o
elastic-align
commit
|
commitdiff
|
tree
2011-06-28
S
t
e
phan Saalfeld
M
erge branch 'mas
t
er
'
i
nto elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
A
d
ded `seems-to-
w
o
rk'
e
l
astic montaging
.
Mis
s
ing parts are
commit
|
commitdiff
|
tree
2011-06-28
S
tephan Sa
a
lfeld
* made Patch
.
PatchImage a static cl
a
s
s
(it has no re
f
e
r
ences
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Ste
p
han Sa
a
lfel
d
adde
d
Pair to Abstr
a
ct
commit
|
commitdiff
|
tree
2011-06-23
Stephan
S
aa
l
fe
l
d
Align
.
java
:
moved
tw
i
ce imp
l
ement
e
d
Model
f
itting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
St
e
p
han Sa
a
lfeld
Ela
s
tic
A
lig
n
u
s
es the local siftPara
m
for identifying
commit
|
commitdiff
|
tree
2011-06-23
St
e
phan Saa
l
feld
Tra
n
sformMe
s
hM
a
ppingWithMask rounds triangel bounding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
St
e
phan Saalfel
d
attempt to get shared
function
for layer alignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan
Saalfeld
ti
t
led montage dialog
`
M
o
n
tage'
consistently with the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
St
e
phan Saalfeld
Fixed
T
hread interruption
in A
l
ign
.
con
n
ectTilePai
r
s
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Step
h
an Saa
l
feld
`
M
ont
a
g
e
all images i
n
this
l
aye
r
':
commit
|
commitdiff
|
tree
2011-06-17
Ste
p
han Saalfe
l
d
Ela
s
t
icAlign fixes:
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalf
e
ld
M
e
rg
e
br
a
n
c
h '
m
aster' into elastic-ali
g
n
commit
|
commitdiff
|
tree
2011-06-16
Steph
a
n Saalfe
l
d
comment t
e
st rp
i
nt
commit
|
commitdiff
|
tree
2011-05-27
Stephan Saalfeld
st
a
rt
e
d with Elast
i
c Alignment, layer alignm
e
nt already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Step
h
an Saal
f
eld
Merge branch 'm
a
ster' in
t
o mpicbg-model-interface
commit
|
commitdiff
|
tree
2010-11-20
Steph
a
n
S
a
a
lfeld
tracking m
p
icbg model-
i
nter
f
ace
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saal
f
eld
mpicbg
.
t
r
akem2
.
transform
.
Trans
f
ormMesh ext
r
a
polates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
S
tephan Saa
l
feld
Fixed bug 202
commit
|
commitdiff
|
tree
2010-08-16
Step
h
an Saalfel
d
* add minima
l
absolute nu
m
ber o
f
inliers as a parameter
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Merge branch 'master' into r
e
jectconstantbackground
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfel
d
Me
r
ge branch '
m
aster' of ss
h
://r
e
po
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2010-08-07
Stepha
n
Sa
a
l
f
e
ld
Merge branch 'reject
c
o
nst
a
n
t
background' of ssh:
/
/r
e
p
o
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
S
tephan Saalfeld
finding connec
t
ed tiles
m
oved into bas
e
c
l
a
s
s
commit
|
commitdiff
|
tree
2010-08-07
St
e
p
h
a
n Sa
a
lfeld
use outlier f
i
lte
r
in optimize
r
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfe
l
d
findin
g
con
n
ected tiles moved i
n
to
b
ase class
commit
|
commitdiff
|
tree
2010-08-06
Steph
a
n Saalfeld
Merge branch 'rejectconstant
b
ackground' of
ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Ste
p
han Saalfeld
Fix wr
o
n
g parameter choic
e
in
A
lig
n
Task
commit
|
commitdiff
|
tree
2010-08-05
Ste
p
h
a
n Saalfeld
Merg
e
branch 'mast
e
r' into
r
e
jectconstantbackgroun
d
commit
|
commitdiff
|
tree
next