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Removed DisplayCanvas.setDrawingColor(int,int,boolean) since it exclusively
2012-09-01
Stephan
S
aalfeld
Re
m
oved Displ
a
yCanvas
.
setDra
w
ingColor(int,int,b
o
olean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Ste
p
ha
n
S
a
a
lfeld
Merg
e
branch
'
m
a
ster' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Sa
a
l
f
e
ld
added experimental loc
a
l contr
a
s
t
enha
n
cer RobustNormal
i
ze
L
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan Saalfeld
removed obs
o
lete choi
c
e
fro
m
alig
n
layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saa
l
feld
split elas
t
i
c montage dialog
f
o
r
block matching and u
s
e
commit
|
commitdiff
|
tree
2012-06-26
Stephan
Sa
a
lfe
l
d
Mer
g
e
branc
h
'master' of ss
h
://repo
.
or
.
cz/
s
rv/git/trak
e
m2
commit
|
commitdiff
|
tree
2012-06-26
Stephan
Sa
a
lfeld
use and do not ign
o
re alpha in helper
m
e
thod
commit
|
commitdiff
|
tree
2012-06-21
Ste
p
han
Saalfeld
use the new sequential dia
l
o
gs in "montage" f
o
r a s
e
lection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
S
t
e
phan Saalfeld
Merge branch 'maste
r
' of ssh://repo
.
o
r
.
cz/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-06-20
S
t
eph
a
n S
a
al
f
e
l
d
fixed range ch
e
c
k
in
l
ayer alignment
commit
|
commitdiff
|
tree
2012-06-14
S
t
e
p
han Saa
l
feld
f
ixed c
o
ndition c
h
eck
i
n A
l
i
gn
L
ayers f
o
r
regularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
Merge
branch 'm
a
ster
'
into regularized-af
f
in
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do
n
ot cons
i
d
e
r discon
n
ecte
d
tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Saalfeld
Merge branch 'regul
a
rized-affine
'
of ssh:
/
/repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
pr
e
-align graphs and match
o
nly overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan S
a
alfeld
pre-al
i
gn grap
h
s and mat
c
h onl
y
overlapp
i
ng tiles
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan
Saalfeld
in
i
t
i
a
lize Tile mo
d
els
a
nd no
t
o
nly patches
in alignGraph
s
commit
|
commitdiff
|
tree
2012-06-08
S
te
p
ha
n
Sa
a
lfeld
chang
e
d alig
n
Graphs input collecti
o
ns from Set to Iterable
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
make sure that
static pa
r
ameters do
not
ove
r
ride each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan Sa
a
l
f
eld
re
m
ove spurious i
m
port
commit
|
commitdiff
|
tree
2012-06-05
S
t
ephan
Saalfeld
workar
o
und Oracle javac gener
i
c
s issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
multi
-
layer-mosa
i
c uses Para
m
/ParamOptimize
.
setu
p
(
Stri
n
g
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
a
n Saalfeld
mont
a
ge layers uses
ParamOptim
i
ze
.
setu
p
i
n
stead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan Saalfeld
do not fix a random tile if none is fixed
commit
|
commitdiff
|
tree
2012-05-29
Ste
p
han Sa
a
lfeld
Co
n
densed
.
mail
m
ap
commit
|
commitdiff
|
tree
2012-05-29
Stephan Sa
a
lf
e
ld
A
d
d
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
S
tep
h
an Saalfel
d
M
erge branch 'ma
s
ter' into r
e
gulariz
e
d-affin
e
commit
|
commitdiff
|
tree
2012-05-21
S
t
ep
h
an Saalfel
d
added
*
None* field to lay
e
r range reference sele
c
tion
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Saal
f
eld
split Align
.
ParamOptimize
d
i
alogs in
p
ieces th
a
t fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan
S
a
a
lfeld
added G
e
nericAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
gen
e
ralized AbstractAffineT
i
le2D g
e
neric
p
a
r
a
meter
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalfeld
track r
e
fact
o
ring in
m
pi
c
b
g
.
commit
|
commitdiff
|
tree
2012-05-09
S
tephan Sa
a
lfeld
added regulari
z
e
d affine layer
a
lignment,
commit
|
commitdiff
|
tree
2012-03-28
Ste
p
h
an Sa
a
lfeld
fixed crea
t
e
I
mage(): use premultiplied
raster
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Saalfe
l
d
d
o
not pr
i
n
t
the
mipmap
scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan S
a
alfeld
f
or
now, do not use pre-multip
l
ied alpha sin
c
e it d
o
es
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
a
n
Saalfe
l
d
F
i
x
e
d wrong paint
i
ng
o
f Patches when us
i
ng a downsa
m
p
ler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
a
alfeld
Down
s
amp
l
erMipMaps now consisten
t
ly uses co
m
bined downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalf
e
ld
fixed DownsamplerMipMap
s
ble
n
di
n
g merged
alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
D
ownsam
p
ler te
s
t still shows it being sig
n
ificant
l
y
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saalfeld
Fixed Do
w
nsampler: range check in
byte
c
o
nve
r
sion w
a
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Mer
g
e branch 'integral' of s
s
h://re
p
o
.
or
.
cz/sr
v
/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
S
t
e
pha
n
Saa
l
feld
add
e
d
m
issin
g
package to F
a
kefil
e
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saal
f
e
l
d
Mer
g
e branch 'mas
t
e
r'
o
f ssh://repo
.
or
.
cz/srv
/
git/
t
rakem2
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalf
e
ld
f
i
x loc
a
l
s
c
ale estimate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added
g
etLoca
l
Sca
l
e(x,
y
) me
t
ho
d
to Patch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saa
l
feld
p
a
tch doe
s
not propa
g
ate NonInv
e
r
tibleModelE
x
c
e
pt
i
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
S
tephan Sa
a
l
feld
Merge b
r
anch 'mas
t
er'
o
f ssh://
r
epo
.
o
r
.
cz/srv/
g
it/trakem
2
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
ad
d
e
d
methods
t
o fe
t
ch
t
he
closest
t
riangle of a tr
a
nsform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
in the mid
d
le
o
f
.
.
.
am
e
nd with f
i
nal
c
ommit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saal
f
e
ld
demons
t
rat
e
byte
conversion in an e
x
t
r
a loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
S
t
ephan Saalfeld
Merge branch
'
in
t
egral' of ssh://repo
.
or
.
c
z/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
D
ownsample
r
finished
.
I
h
ave
tested se
v
eral variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Ste
p
han
Saal
f
eld
experimantal commit:
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalfeld
Merge branch 'integral
'
of ssh
:
//repo
.
or
.
cz
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stepha
n
Saalfe
l
d
Downsamp
l
er
with alpha-channels rendering into by
t
e
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfeld
Merge branch 'master' of
s
sh://
r
epo
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-02-22
Stephan
Saalfe
l
d
set interpo
l
ation mode to a
c
t
u
ally in
t
erpol
a
te
m
ask
s
commit
|
commitdiff
|
tree
2011-10-01
S
te
p
han S
a
al
f
eld
make IJ
.
lo
g
to U
t
ils
.
log in ElasticLa
y
erAlignme
n
t
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saal
f
eld
use
M
ovingLe
a
stSquaresTransform2
i
n ElasticLayerAlignment
commit
|
commitdiff
|
tree
2011-08-10
Stephan
S
aalfeld
use
MovingLeastSqua
r
es
T
ransform2
in Elast
i
c
Montage
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
u
s
e M
o
vi
n
gLeastSquaresTransform2 for war
p
ing
i
n mu
l
ti
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
S
t
ephan Saalfeld
use MovingLeast
S
quaresTransform2 in NonLinearTransformMode
commit
|
commitdiff
|
tree
2011-08-10
Ste
p
han Saalfeld
Adde
d
MovingLe
a
stSquaresTransform2 exten
d
i
n
g
commit
|
commitdiff
|
tree
2011-08-07
St
e
phan
S
aalfel
d
Elasti
c
Lay
e
rAlignme
n
t
: When transferring
l
ayer transformatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan S
a
alfeld
f
l
ush
cache between layer ex
p
orts
(
the cach
e
is oth
e
rwi
s
e
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan
S
a
al
f
eld
f
ree memory bef
o
re
ru
n
ning mem
o
ry dem
a
nding tasks in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saalfeld
fixed bug in linearLaye
r
Alignment, calculat
e
and
a
p
p
ly
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stephan Sa
a
lfeld
flush
i
mage cache memory before doin
g
a
m
ont
a
ge
commit
|
commitdiff
|
tree
2011-06-29
Ste
p
han Sa
a
lfeld
Elast
i
cMon
t
age:
commit
|
commitdiff
|
tree
2011-06-29
Stephan
S
aa
l
feld
Merge branch
'
master' into elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalf
e
ld
Merge bra
n
c
h
'mast
e
r' into elastic-align
commit
|
commitdiff
|
tree
2011-06-28
S
teph
a
n Saalfeld
Added `seems-to-work' el
a
stic
montaging
.
Missin
g
pa
r
ts are
commit
|
commitdiff
|
tree
2011-06-28
Ste
p
han
S
aalfeld
* made Patch
.
PatchIma
g
e a
s
tati
c
class
(it has no references
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
S
teph
a
n
Saa
l
feld
added Pair to A
b
s
t
rac
t
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saa
l
feld
Al
i
g
n
.
jav
a
: moved twice implem
e
nted
Mo
d
el fittin
g
and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Steph
a
n
Saalfeld
Ela
s
ti
c
Align uses the local siftParam for identifying
commit
|
commitdiff
|
tree
2011-06-23
Ste
p
ha
n
Sa
a
lfeld
Trans
f
ormM
e
shM
a
p
p
ingWithMask
rounds triangel bo
u
ndin
g
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalf
e
ld
atte
m
p
t to
g
e
t shared
funct
i
on for
l
ayer a
l
ignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Step
h
a
n Saalfeld
ti
t
led m
o
n
t
age
d
ialog `Montage' cons
i
stently with
t
he
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan
Saalf
e
l
d
F
ixed Thre
a
d interruption in Align
.
c
o
nnectTilePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stepha
n
Saa
l
feld
`
M
ontage al
l
image
s
i
n this l
a
ye
r
'
:
commit
|
commitdiff
|
tree
2011-06-17
Stephan Sa
a
lfeld
Ela
s
ticA
l
ign fixes:
commit
|
commitdiff
|
tree
2011-06-16
Stephan
Saalfeld
Me
r
g
e bra
n
ch 'maste
r
'
i
nto elastic-align
commit
|
commitdiff
|
tree
2011-06-16
Step
h
a
n
Sa
a
lf
e
l
d
commen
t
t
e
st rpint
commit
|
commitdiff
|
tree
2011-05-27
Stephan Saalfeld
started
w
ith E
l
as
t
ic Alignment, layer ali
g
nment a
l
ready
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan Saal
f
e
l
d
Merge b
r
anch 'mas
t
er'
i
nto mpicbg
-
m
odel-inte
r
f
a
ce
commit
|
commitdiff
|
tree
2010-11-20
St
e
pha
n
Saalfe
l
d
tr
a
cking mp
i
cb
g
model-inte
r
face
commit
|
commitdiff
|
tree
2010-08-18
St
e
phan Saalfeld
mpicbg
.
t
r
akem2
.
t
ran
s
form
.
T
r
ansformMesh e
x
t
r
apolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan
S
aalfeld
Fixe
d
bug
202
commit
|
commitdiff
|
tree
2010-08-16
St
e
phan Saalfeld
*
add minimal absolute number of inliers as a parame
t
er
commit
|
commitdiff
|
tree
2010-08-16
Step
h
an Saalfeld
M
erge branch 'maste
r
' into reject
c
onstantbac
k
ground
commit
|
commitdiff
|
tree
2010-08-16
St
e
phan Saalfeld
Merge branch 'mas
t
er
'
of ssh
:
//repo
.
or
.
cz/srv/git
/
t
rak
e
m2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
Merge bran
c
h
'
rejectc
o
n
s
ta
n
t
b
ackground' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Ste
p
han Saal
f
eld
fi
n
ding connected tiles moved into base cl
a
ss
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
u
s
e outlier f
i
lt
e
r in o
p
ti
m
izer
commit
|
commitdiff
|
tree
2010-08-07
Stephan S
a
a
lfel
d
find
i
n
g connected tile
s
mov
e
d
into
base class
commit
|
commitdiff
|
tree
2010-08-06
S
t
e
p
h
an S
a
alfeld
Merge br
a
nc
h
'reje
c
tconstantbackground' of ssh:
/
/repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
S
tephan
S
aalfe
l
d
Fix
w
r
o
ng
p
aramet
e
r choice in AlignTask
commit
|
commitdiff
|
tree
2010-08-05
Ste
p
han Saalfeld
M
erg
e
bran
c
h 'master' into rejec
t
constantbackg
r
ound
commit
|
commitdiff
|
tree
next