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auto-finalize constant properties and parameters in Utils
2014-10-02
Stepha
n
Saalfe
l
d
auto-finalize constant properties an
d
pa
r
ameters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
S
aalfe
l
d
th
r
eadsafe Utils
.
ensure(F
i
l
e
)
commit
|
commitdiff
|
tree
2014-06-06
Step
h
an Saalfeld
fixed bug in generati
o
n of
al
p
h
a
m
a
s
ks
commit
|
commitdiff
|
tree
2014-06-05
S
tephan Saal
f
eld
external
i
zed D
i
stort
i
onCorr
e
c
t
ion
.
run to
e
n
a
b
le calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saal
f
eld
E
c
l
ip
s
e autu-cosmetics in Dist
o
rtio
n
Correction
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Saalfeld
Mer
g
e branch 'ma
s
te
r
' into intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Stepha
n
Saalfeld
use standard wri
t
er for coo
r
dinatetransfor
m
s
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saal
f
e
ld
d
epend on
ja
v
ax
.
media for jai
commit
|
commitdiff
|
tree
2014-05-19
Step
h
an Saalfeld
added methods fo
r
downsamp
l
i
n
g mor
e
than
one level
commit
|
commitdiff
|
tree
2013-10-10
St
e
phan Saalfe
l
d
repl
a
ced plugins
.
config with the
Fiji version
commit
|
commitdiff
|
tree
2013-09-20
Stephan S
a
a
l
f
eld
Merg
e
bra
n
ch 'master' of ssh://repo
.
or
.
cz/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Step
h
an Saalfeld
M
e
rge branch 'mas
t
e
r
'
of ssh://repo
.
or
.
cz/srv/git/trake
m
2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Par
a
llel
p
a
irO
v
e
rlap
p
ingT
i
les did not work and
r
eporte
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Step
h
an Saalfe
l
d
Me
r
g
e
branch 'master' of ssh:/
/
re
p
o
.
or
.
cz/srv/
g
it/
t
rak
e
m
2
commit
|
commitdiff
|
tree
2013-09-16
S
tephan S
a
alfeld
re-added leg
a
cy optimiz
e
r
f
or spring meshes, this wo
u
l
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfe
l
d
T
2
-NIT/pom
.
xml can i
n
herit version n
u
mber from
parent
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an Saalf
e
l
d
added
miss
i
n
g de
p
endencies to java3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan
S
aa
l
feld
set parent po
m
of pom-trakem2 to
pom-fiji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalfel
d
Merge branch '
s
pr
i
ng
-
mesh2' of
ssh://re
p
o
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge
b
ranc
h
'master
'
int
o
spring-mesh
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalfeld
raised mpic
b
g dependency version
t
o 0
.
6
.
1-SNA
P
SHOT
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Saalfel
d
r
a
ised dependency to Simpl
e
_N
e
uri
t
e_T
r
acer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfe
l
d
Merge
b
r
a
nch 'mast
e
r' into spring-me
s
h2
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
alfeld
added comments
and au
t
o-finalize in Distor
t
i
o
nCorr
e
c
tion/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
S
a
alfeld
a
d
ded mpic
b
g
.
v
ers
i
on as maven
p
r
o
perty,
commit
|
commitdiff
|
tree
2013-05-06
S
t
ephan Saalfel
d
t
r
a
c
k mo
v
e
o
f
the
imglib
1
dependency
commit
|
commitdiff
|
tree
2013-04-22
Steph
a
n Saa
l
feld
Merge bran
c
h 'master' into spring-m
e
sh2
commit
|
commitdiff
|
tree
2013-03-05
Ste
p
han Saalfeld
Merge
bran
c
h 'master' into
spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
S
t
ephan Saalfeld
use arraylist w
h
ere arraylists a
r
e return
e
d
commit
|
commitdiff
|
tree
2013-01-16
Ste
p
han
S
a
al
f
e
l
d
adjust
mpicbg spring-mesh2
w
hich ne
e
ds less
d
ampin
g
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fixed bug
i
n P
a
t
ch
.
g
e
tFul
l
C
oordinateTransform t
h
at
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Cha
n
ged fixedPatches/Tiles input collection t
o
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
S
aal
f
e
l
d
Pai
r
c
onstructor has
to be public
commit
|
commitdiff
|
tree
2013-01-10
S
t
ephan Saalfeld
forgot to set isAligned
flag in elastic la
y
e
r
alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan
Saalfeld
el
a
s
t
ic mon
t
age p
a
r
am must
be
p
ublic
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
a
d
ded Patch
.
getF
u
llCordinateT
r
ansf
o
r
m() which generates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
* re
m
oved isAligned f
r
om
A
bstract
P
a
ram
c
lass
commit
|
commitdiff
|
tree
2013-01-05
Ste
p
han S
a
al
f
eld
87
7
: i
t
is legal for layerT
h
ing to be null
commit
|
commitdiff
|
tree
2012-12-21
Stephan
S
aalfeld
C
orrected
several long-s
t
a
n
ding iss
u
es with S
I
FT-linear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
Regu
l
a
ri
z
e
d
L
aye
r
Alignment got more flex
i
ble API methods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alfeld
clearing ca
c
he in layer
alignment mu
s
t b
e
d
e
fa
u
lt
t
rue
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
print optimizer re
s
ult
s
and
d
o not
p
r
i
nt "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
do not
r
e
m
o
v
e empty lay
e
r
s
i
n
layer alignment
commit
|
commitdiff
|
tree
2012-11-07
Stepha
n
Saa
l
fe
l
d
fix
e
d ve
r
si
o
n
n
umber of mpicbg dependency
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalf
e
ld
fix
e
d merge error: m
o
v
ed RobustN
o
rmalizeLocalContr
a
st
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
St
e
phan S
a
al
f
el
d
multi
-
threaded RobustNormal
i
zeLocalContr
a
st
main
b
ody
commit
|
commitdiff
|
tree
2012-09-01
S
t
ep
h
an Saalfeld
R
emoved
D
isplayCa
n
vas
.
se
t
DrawingColor(int,int,boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
Merge branch 'mas
t
er' of ssh://re
p
o
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan S
a
alfeld
add
e
d e
x
perimental local contrast enha
n
cer
R
o
b
ustNormalizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan Saalfeld
removed obsolete choice
from
align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
split elastic montage dialo
g
for b
l
ock ma
t
ching a
n
d
u
s
e
commit
|
commitdiff
|
tree
2012-06-26
Stephan Sa
a
lfeld
Merge
b
ranch 'master' of ssh://repo
.
or
.
cz/
s
rv/git/t
r
ak
e
m
2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saal
f
eld
use and do not ignore alpha i
n
helpe
r
me
t
hod
commit
|
commitdiff
|
tree
2012-06-21
S
t
e
p
han Sa
a
lfeld
us
e
the n
e
w
sequential dial
o
g
s
in "montag
e
" for
a
sel
e
ct
i
on
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Merge branch 'master' of ssh:
/
/repo
.
or
.
cz/s
r
v/git/t
r
akem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
f
ixed ran
g
e check i
n
layer
a
lignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
f
i
x
ed condition che
c
k i
n
Align Layers
for regularizatio
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saa
l
feld
Mer
g
e b
r
anch
'mast
e
r' int
o
regularized-
a
ffine
commit
|
commitdiff
|
tree
2012-06-08
S
t
e
p
han Saalfeld
do not consider di
s
c
onnected tiles
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n
Saalfe
l
d
Merge
branch
'
regularized-affine' of ssh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an
S
aalfeld
pr
e
-
a
li
g
n graphs and match only o
v
e
r
lapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stepha
n
Saal
f
eld
pre-align gr
a
phs and m
a
tch only over
l
apping tiles
commit
|
commitdiff
|
tree
2012-06-08
S
t
epha
n
Saalfeld
initialize Tile mod
e
ls
a
nd not on
l
y
p
atches
i
n
a
lignGr
a
phs
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Saal
f
eld
chan
g
ed alignGraph
s
i
n
p
ut
collections from Set
t
o Iterable
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an
S
a
alfeld
make
s
ur
e
that st
a
tic para
m
e
ters do not
overrid
e
each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saa
l
feld
remove spurious import
commit
|
commitdiff
|
tree
2012-06-05
Stephan Sa
a
lfeld
workaround Oracle javac gen
e
rics issue
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Sa
a
l
f
e
ld
multi-lay
e
r-mosa
i
c uses Param
/
ParamOp
t
i
mize
.
setup(S
t
ring
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Saalfeld
montage
la
y
ers uses ParamOpt
i
miz
e
.
s
e
t
up instead
o
f
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan Saalfeld
do not fix a random tile if none
is fixe
d
commit
|
commitdiff
|
tree
2012-05-29
Stephan
S
aalfel
d
Condensed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfe
l
d
Adde
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Stephan
S
a
a
lfel
d
M
erge
bran
c
h 'master' into re
g
ularize
d
-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan S
a
alfeld
added *
N
one* field to
layer rang
e
reference sel
e
c
t
ion
commit
|
commitdiff
|
tree
2012-05-21
Stephan
Saalfeld
s
p
lit Align
.
P
a
ramOptimize dialogs in piece
s
that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
S
a
alf
e
ld
a
d
ded Gener
i
cAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfel
d
general
i
zed Abstr
a
ctA
f
fineTile2D generic par
a
m
e
t
e
r
commit
|
commitdiff
|
tree
2012-05-15
Step
h
a
n
Saalfeld
track refactori
n
g
in
mpicb
g
.
commit
|
commitdiff
|
tree
2012-05-09
St
e
phan Saalfeld
add
e
d
regularized af
f
ine l
a
yer alignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfe
l
d
fixed createImage(): use premultiplied ra
s
ter
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saal
f
eld
d
o
no
t
p
r
int the
m
i
pma
p
sca
l
e
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saalfel
d
for n
o
w, do not us
e
pre-multiplied alpha since it
does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfe
l
d
Fi
x
ed wro
n
g p
a
intin
g
of Patches when using a downs
a
mpler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
D
o
wnsamplerMipMaps now
c
o
nsistently use
s
c
o
m
b
ined dow
n
sampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n S
a
alfe
l
d
f
ixed
D
o
wnsampl
e
r
M
i
pMaps ble
n
ding
merg
e
d alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saa
l
fel
d
Downsampler tes
t
s
till sh
o
ws it being significantl
y
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fixed Downsampler: ran
g
e check in by
t
e conversion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
Saalfeld
Merge bran
c
h
'integra
l
' of
ssh:
/
/repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
S
t
ephan Sa
a
lfeld
added m
i
ssing package to Fa
k
e
f
ile
commit
|
commitdiff
|
tree
2012-03-08
Step
h
an Saalfeld
Merge branch
'
master' of ssh://
r
e
p
o
.
or
.
cz/s
r
v/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Steph
a
n Saalfeld
fix local sca
l
e es
t
imate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added getLocalScal
e
(x,y) method to
P
atch
commit
|
commitdiff
|
tree
2012-03-07
Stepha
n
Saalfeld
patch
does not propagat
e
No
n
InvertibleModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Steph
a
n Saalfeld
Merge branch 'mas
t
er'
o
f ssh://repo
.
or
.
cz/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-03-07
S
teph
a
n Saalfeld
added me
t
hod
s
to fetc
h
the closest tria
n
gle of a transform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan S
a
a
lfeld
in t
h
e middle of
.
.
.
amend with final
commit
commit
|
commitdiff
|
tree
2012-02-27
Steph
a
n Saalfeld
demonstrate byt
e
conver
s
ion in
a
n extra loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
St
e
phan Saal
f
el
d
M
e
rge b
r
anch 'i
n
t
e
gral' of ssh://repo
.
o
r
.
cz/srv/
g
it
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Downsample
r
f
inished
.
I have t
e
sted
s
everal va
r
iants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saalfeld
experimantal c
o
mmit:
commit
|
commitdiff
|
tree
next