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Merge branch 'intensity-transform'
2014-12-17
S
tephan
Saalfeld
Merge
b
r
anch 'in
t
en
s
ity-transform'
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfel
d
bump to next
development cycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan
S
a
a
l
feld
repro
d
u
c
ible
build pom-t
r
akem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
Merge remote-tracking bra
n
ch
'
origin/master'
commit
|
commitdiff
|
tree
2014-12-12
Steph
a
n Saalfe
l
d
bu
m
p to new
d
evelopment
c
ycl
e
commit
|
commitdiff
|
tree
2014-12-12
St
e
phan Saalfe
l
d
reprodu
c
ibl
e
build p
o
m-trakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan
Saalfeld
Merg
e
b
ranch 'm
a
st
e
r' o
f
github
.
co
m
:trakem2
/
TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
Saalf
e
ld
added Val
u
eTo
N
o
i
se fi
l
ter wh
i
ch fills a given intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-07
Ste
p
han Saal
f
eld
Me
r
ge branch 'mast
e
r' into coord
X
fmFix
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
Mer
g
e remote-tracki
n
g branch 'origi
n
/in
t
e
nsity-transform'
commit
|
commitdiff
|
tree
2014-10-04
Steph
a
n Saalfeld
a
dded Robus
t
Normalized
L
ocalContrastFi
l
ter
,
fast a
n
d
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
S
tephan S
a
alfeld
Changed default block radius in NormalizeLocalCont
r
ast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
lfel
d
auto-
r
emoved some training whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
add
e
d
r
un metho
d
that
d
oes
n
o
t
n
eed
a
w
o
rker for
easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an Saalfeld
a
uto-removed some trail
i
ng
w
hitespac
e
s
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan S
a
alfeld
parallelized inte
r
section tes
t
s for pairOv
e
rlappingTiles
commit
|
commitdiff
|
tree
2014-10-02
S
teph
a
n Saalfeld
auto-final
i
ze constant
p
roperties and par
a
meters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
S
aalf
e
ld
threadsafe Utils
.
ensure(Fil
e
)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Sa
a
l
f
eld
fixed bug in generation of al
p
h
am
a
s
ks
commit
|
commitdiff
|
tree
2014-06-05
S
tephan Saalfeld
external
i
zed DistortionCor
r
ection
.
run
to ena
b
le cal
l
i
ng
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan
S
aalfe
l
d
Ecl
i
pse autu-cosmetics in D
i
stortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
M
erge
branch 'm
a
s
ter' into intensi
t
y-tran
s
form
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
han Sa
a
lfeld
use stand
a
rd writer
for coordinate
t
r
ansfo
r
ms
commit
|
commitdiff
|
tree
2013-10-10
St
e
p
h
an Saalfel
d
re
p
lace
d
plugins
.
config with the Fi
j
i version
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalfeld
Merg
e
branch 'mas
t
er'
o
f ssh://repo
.
or
.
cz/srv/g
i
t/tra
k
em2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Merge branch 'mas
t
er' of s
s
h://repo
.
o
r
.
cz/srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan S
a
alfeld
Par
a
llel pairOve
r
lappingTiles d
i
d not
work an
d
re
p
orted
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Saalf
e
ld
Merge branch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
re-added legacy o
p
t
im
i
zer for spring meshes, th
i
s
w
ould
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
tephan Saal
f
eld
T2-NIT/po
m
.
xml c
a
n inherit
v
ersion
n
umber from parent
commit
|
commitdiff
|
tree
2013-08-14
St
e
ph
a
n Saalfe
l
d
a
d
ded m
i
ssing dep
e
nden
c
ie
s
t
o
j
a
v
a
3d core-util
s
a
n
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan
S
a
alfeld
s
et parent pom of po
m
-trakem2
t
o pom-f
i
ji
.
2
.
0
.
0-SNAPSHO
T
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan Saalfeld
Merge bran
c
h 'spring-me
s
h2' of ssh://re
p
o
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Saal
f
el
d
M
e
r
ge bran
c
h
'mas
t
er'
i
nto spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saa
l
f
e
ld
raised mpicbg depe
n
denc
y
v
e
rsion to 0
.
6
.
1-SNA
P
SHO
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
raised depe
n
de
n
cy to Simple_Neurite
_
Trace
r
to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saa
l
feld
Merge
branch
'
master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Sa
a
l
feld
ad
d
ed
comments and au
t
o-
f
i
nalize in D
i
stortionCo
r
rect
i
on/NL
T
commit
|
commitdiff
|
tree
2013-08-12
S
t
e
phan S
a
a
l
f
eld
added m
p
icbg
.
version a
s
mav
e
n
pro
p
er
t
y,
commit
|
commitdiff
|
tree
2013-05-06
S
t
ephan Saalfeld
t
ra
c
k m
o
v
e
o
f th
e
imglib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Stephan
Saa
l
feld
Me
r
ge branch 'mast
e
r' into
s
pring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saalfeld
Merge branch 'mas
t
er' into spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
St
e
phan Saalfeld
use
arrayli
s
t where arr
a
y
l
ist
s
are
r
eturned
commit
|
commitdiff
|
tree
2013-01-16
Stephan Saalfeld
a
d
just mpicbg
spring-mesh
2
w
hich n
e
eds le
s
s da
m
ping
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
a
lfeld
Fi
x
ed b
u
g in Patc
h
.
g
e
tFul
l
CoordinateTran
s
fo
r
m that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
S
t
ephan S
a
alfeld
Changed fixedPatc
h
es/Tile
s
i
np
u
t collecti
o
n
t
o Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Pair constructor has t
o
be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saal
f
eld
for
g
ot to set isAli
g
ned flag in
e
l
a
s
ti
c
lay
e
r al
i
gnment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Steph
a
n
S
a
alf
e
ld
e
l
ast
i
c montage param m
u
st be p
u
blic
commit
|
commitdiff
|
tree
2013-01-07
S
tepha
n
S
a
alfel
d
added P
a
tch
.
getFullCordinat
e
Tr
a
nsform() which generates a
commit
|
commitdiff
|
tree
2013-01-07
Ste
p
han S
a
alfeld
* removed isA
l
igned from
Abstrac
t
Param
class
commit
|
commitdiff
|
tree
2013-01-05
S
t
ephan
S
aalfeld
877: it i
s
legal for layerTh
i
n
g to b
e
nul
l
commit
|
commitdiff
|
tree
2012-12-21
St
e
p
h
an Saal
f
e
ld
Corrected several long-
s
tan
d
ing i
s
sues with SIFT-line
a
r and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
R
egula
r
izedLa
y
erA
l
i
g
nment got more flexible
API methods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
c
learing c
a
che in la
y
er ali
g
nment must
b
e
d
efault
true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
pr
i
nt
optimizer resu
l
t
s and
d
o no
t
p
rint
"
matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
d
o
not
r
emove em
p
t
y
layers in
l
aye
r
alignment
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saa
l
feld
fixed version numb
e
r of mpicbg dependency
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saal
f
e
l
d
fixed merge err
o
r:
m
oved RobustNormalizeLocalContr
a
st
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
t
ephan Saalfeld
m
ulti-
t
hreaded RobustNormalizeL
o
calCo
n
trast ma
i
n
body
commit
|
commitdiff
|
tree
2012-09-01
Stephan
Saalfel
d
Removed Displ
a
yCanvas
.
setDrawin
g
Color(int,int,boole
a
n
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan S
a
alfeld
Merge branch 'master' of ssh:
/
/r
e
p
o
.
or
.
cz
/
srv/gi
t
/trak
e
m2
commit
|
commitdiff
|
tree
2012-08-31
Steph
a
n Saalfe
l
d
add
e
d experimen
t
al
local contrast e
n
h
a
ncer RobustNormal
i
zeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
S
tephan Sa
a
l
f
eld
removed obsolete choice fr
o
m a
l
i
gn layers
dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
split elasti
c
montage dial
o
g fo
r
block matching and us
e
commit
|
commitdiff
|
tree
2012-06-26
Stephan
S
a
alfeld
Merge
b
r
anch
'mas
t
er' of ssh:/
/
repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
use an
d
d
o n
o
t ignore alpha in help
e
r method
commit
|
commitdiff
|
tree
2012-06-21
Steph
a
n S
a
alfeld
use the n
e
w se
q
ue
n
tial dialogs in
"
monta
g
e" for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
S
t
e
p
han S
a
a
l
feld
Merge bra
n
c
h 'master' of ssh://
r
epo
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan
S
aalfeld
fixe
d
ran
g
e ch
e
ck in layer alignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan
S
a
a
l
feld
fixed condition check in Alig
n
Layers for regularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stepha
n
S
aa
l
feld
Merge branch 'master' into r
e
gularized-affine
commit
|
commitdiff
|
tree
2012-06-08
Stepha
n
Saalfel
d
do not consider
d
isconnected t
i
les
commit
|
commitdiff
|
tree
2012-06-08
S
t
ep
h
an Saalf
e
ld
M
e
rg
e
br
a
n
c
h
'
r
e
gu
l
arized-affine' of ssh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfel
d
pre-align graphs and match
o
n
l
y
ove
r
lapping tiles
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saalf
e
ld
pr
e
-alig
n
gra
p
hs
and match only overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
e
ld
ini
t
ialize Tile mo
d
els an
d
n
ot o
n
ly patches in alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Sa
a
lfeld
changed ali
g
nGraphs inpu
t
collections from Set to Iterab
l
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Saalfeld
make su
r
e
t
hat static para
m
eter
s
d
o
n
o
t override e
a
c
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
S
aalfeld
remove spurious
i
mport
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an S
a
alfeld
workaround Oracle ja
v
ac
generics issue
commit
|
commitdiff
|
tree
2012-06-05
St
e
pha
n
Saalfeld
multi-layer-
m
o
s
aic uses Param
/
ParamOptimi
z
e
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Steph
a
n Saalfeld
montage layers us
e
s ParamOptimize
.
setu
p
instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
do no
t
f
i
x
a r
a
nd
o
m til
e
if none
is fixe
d
commit
|
commitdiff
|
tree
2012-05-29
Steph
a
n
Saalfeld
Condense
d
.
mai
l
map
commit
|
commitdiff
|
tree
2012-05-29
Ste
p
han
S
aalfeld
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
p
han Saalfeld
Me
r
g
e branch 'master' in
t
o
r
egula
r
ized-affine
commit
|
commitdiff
|
tree
2012-05-21
S
tephan
S
a
alfeld
adde
d
*None*
field to layer r
a
n
g
e ref
e
r
enc
e
s
e
le
c
ti
o
n
commit
|
commitdiff
|
tree
2012-05-21
Steph
a
n Saa
l
feld
split Align
.
P
a
r
amOptimize dialogs in p
i
eces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
p
h
an Saalfel
d
added Generi
c
AffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfel
d
generalized
A
b
stractAffineT
i
le2D generic parameter
commit
|
commitdiff
|
tree
2012-05-15
Step
h
an Saalfeld
track refactoring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan
Saalfeld
a
d
ded regularized affine layer al
i
gnment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan
S
aalfeld
fix
e
d createImage()
:
use premultiplied raste
r
commit
|
commitdiff
|
tree
2012-03-27
S
t
e
p
han Saalf
e
ld
do n
o
t p
r
int the mipm
a
p
sc
a
le
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saal
f
eld
f
o
r
now, do not u
s
e pre-mult
i
plied al
p
ha since it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ep
h
an
Saalfel
d
Fi
x
ed wro
n
g painti
n
g of P
a
tches when usi
n
g a down
s
amp
l
er
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n
S
aalfeld
DownsamplerMipMap
s
now
consis
t
entl
y
uses combined downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saalfeld
fi
x
ed DownsamplerMipMa
p
s blending
m
erg
e
d alpha
into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Downsampler test still shows i
t
being significantly
.
.
.
commit
|
commitdiff
|
tree
next