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Merge branch 'intensity-transform'
2014-12-17
S
t
ephan
S
a
a
lfeld
M
e
rge br
a
nch 'intens
i
ty-transform'
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfe
l
d
bump to ne
x
t deve
l
opmen
t
c
y
cle
commit
|
commitdiff
|
tree
2014-12-13
S
t
ephan Saalfeld
reproducib
l
e build pom-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
Merge rem
o
te-
t
racking b
r
anch 'origin/m
a
ster'
commit
|
commitdiff
|
tree
2014-12-12
Step
h
an Sa
a
lfel
d
bu
m
p to new developm
e
nt cycle
commit
|
commitdiff
|
tree
2014-12-12
S
t
ephan Saalfeld
reproducible build pom-tr
a
kem2
-
1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfe
l
d
Merge
b
ranch 'master' of
github
.
c
om:tra
k
em2/TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Ste
p
han S
a
alfeld
a
dded ValueT
o
N
oi
s
e filter whi
c
h fills
a
gi
v
en int
e
nsi
t
y
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Stephan Saa
l
f
e
ld
Update README
commit
|
commitdiff
|
tree
2014-11-12
St
e
phan Saalfeld
Update REA
D
M
E
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
M
er
g
e branch 'master' into co
o
rdXfmFix
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
Merge r
e
mote
-
tracking branch
'
ori
g
in/intensity-t
r
ansform'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Sa
a
l
fel
d
added Robust
N
ormalizedLoc
a
lContrastFilte
r
, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan S
a
alfeld
Changed
defa
u
lt block radius in Nor
m
a
l
izeLoc
a
lC
o
ntra
s
t
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
au
t
o-removed s
o
me
t
raining white
s
pace
s
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n
S
a
alfeld
a
d
d
ed run
m
ethod tha
t
does not ne
e
d a worker for
eas
i
er
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalfeld
auto-remove
d
s
ome
t
r
a
iling whitespa
c
es
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
p
a
r
allelized in
t
ersection tests
fo
r
pairOverlappingTil
e
s
commit
|
commitdiff
|
tree
2014-10-02
St
e
phan Saalf
e
ld
auto-finalize
constant propertie
s
and parame
t
ers
in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan S
a
a
lfeld
threadsafe Uti
l
s
.
ensure(
F
il
e
)
commit
|
commitdiff
|
tree
2014-06-06
Stephan
S
aa
l
feld
f
i
xed bug in genera
t
ion of alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan
Sa
a
lfeld
externalized Distort
i
onC
o
r
r
ect
i
on
.
run
to enable ca
l
li
n
g
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Step
h
an Saalf
e
ld
Ec
l
i
pse a
u
tu-co
s
metics i
n
DistortionCorre
c
tion
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Saalfeld
Merge branch '
m
a
ster' into intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
use
s
tandard writer for coor
d
in
a
tetransfo
r
ms
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
depend
on javax
.
medi
a
fo
r
j
ai
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
ha
n
Saalfeld
added methods for downsampl
i
ng more than one level
commit
|
commitdiff
|
tree
2013-10-10
Stepha
n
S
aalfeld
replaced plug
i
ns
.
config wi
t
h the
Fij
i
ver
s
io
n
commit
|
commitdiff
|
tree
2013-09-20
Step
h
an Saalfeld
Mer
g
e branch 'master'
of ssh:/
/
repo
.
or
.
c
z/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2013-09-19
Step
h
an
Saa
l
feld
M
erge br
a
nch 'master' of ssh://repo
.
or
.
cz/s
r
v
/git/tr
a
k
em2
commit
|
commitdiff
|
tree
2013-09-19
Steph
a
n
S
aalfel
d
P
arallel pairOver
l
appingTiles did n
o
t w
o
rk and reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfe
l
d
M
e
rge branch 'master' of
s
sh:/
/
repo
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan S
a
alfeld
re-add
e
d lega
c
y opti
m
i
zer for
s
pring meshes,
t
his would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
St
e
ph
a
n Saa
l
feld
T2-NIT/pom
.
xml can
i
nherit version numbe
r
f
r
om
p
ar
e
nt
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
added missin
g
dependencies t
o
jav
a
3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
St
e
phan Saal
f
eld
s
e
t parent p
o
m
of pom
-
trakem2 to
pom-fiji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Mer
g
e branch
's
p
ring-mesh2' of
s
sh
:
//repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfel
d
Merge branch 'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
r
aised mpicb
g
depen
d
ency version to
0
.
6
.
1-SNA
P
SHO
T
commit
|
commitdiff
|
tree
2013-08-12
St
e
p
han Saalfel
d
ra
i
sed dependency to Simple_Neurite
_
Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han Saalfeld
Merge
b
ranch 'ma
s
ter' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan Saalfe
l
d
added comments and
auto-finalize in
D
istortionCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saal
f
eld
add
e
d mpicbg
.
version
as ma
v
en property,
commit
|
commitdiff
|
tree
2013-05-06
Ste
p
han Saalfeld
track mov
e
of t
h
e im
g
lib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Stepha
n
Saalfe
l
d
Mer
g
e branch 'maste
r
' into spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stepha
n
Saalfeld
Merge
b
ranch 'master' into spring
-
mesh2
commit
|
commitdiff
|
tree
2013-01-18
S
tephan Saa
l
feld
use a
r
raylist
w
h
e
re arrayl
i
sts
are return
e
d
commit
|
commitdiff
|
tree
2013-01-16
Ste
p
han Saalfeld
adjust mpicbg spring-
m
esh2
w
hich needs less d
a
mping
commit
|
commitdiff
|
tree
2013-01-11
Step
h
a
n
S
a
alfeld
Fixed
b
ug i
n
Patch
.
getFullCoordinateTr
a
nsf
o
r
m that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
S
aalfeld
C
h
anged
f
ix
e
dP
a
tc
h
es/Tile
s
input collection to
S
et
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
S
aalfeld
Pair
c
o
n
s
tru
c
tor has t
o
be
public
commit
|
commitdiff
|
tree
2013-01-10
S
tephan
Saalfe
l
d
fo
r
got to s
e
t isAligned fl
a
g i
n
e
las
t
ic
layer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Ste
p
han Sa
a
l
fel
d
elastic montag
e
para
m
must be
public
commit
|
commitdiff
|
tree
2013-01-07
St
e
phan Sa
a
lfeld
added Patc
h
.
ge
t
FullCordina
t
eT
r
ansform() which generates a
commit
|
commitdiff
|
tree
2013-01-07
Step
h
an Saalfe
l
d
*
removed
i
sAligned from
Abstract Param class
commit
|
commitdiff
|
tree
2013-01-05
St
e
phan Saalfeld
877: it is legal for la
y
erThing t
o
be null
commit
|
commitdiff
|
tree
2012-12-21
St
e
p
han Sa
a
lfeld
Corrected several lo
n
g-sta
n
ding issues wit
h
SIFT-linear
and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
R
e
gularizedLayerAlignment got mor
e
f
lexible
A
PI methods and
commit
|
commitdiff
|
tree
2012-12-19
S
tephan Saalfeld
clear
i
ng ca
c
he
in layer
alignment must be
d
efault true
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alfeld
print optimiz
e
r result
s
and do
not print "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
do no
t
remove
e
mpty la
y
ers in layer alignment
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed versio
n
numbe
r
o
f mpicbg dependency
commit
|
commitdiff
|
tree
2012-11-07
Stephan Sa
a
lfeld
fixed merge er
r
o
r
: moved
R
obustNorma
l
ize
L
ocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
tephan Saalfeld
m
u
lt
i
-threaded
Ro
b
ustNormalizeLoca
l
Contra
s
t main body
commit
|
commitdiff
|
tree
2012-09-01
S
tephan Saa
l
feld
Rem
o
ved D
i
splayCanvas
.
setDrawingColor(int,int,bool
e
a
n
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saa
l
fe
l
d
Merge
branch 'maste
r
' o
f
ssh:/
/
repo
.
o
r
.
cz/srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Ste
p
han Saal
f
eld
added experimental
l
ocal co
n
trast en
h
ancer
Rob
u
stNo
r
malizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
St
e
phan Saalfeld
removed obsolete choic
e
from align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Ste
p
h
a
n
Saalfeld
s
plit
el
a
stic monta
g
e
d
ialo
g
fo
r
b
l
ock matchin
g
and use
commit
|
commitdiff
|
tree
2012-06-26
Ste
p
han Saalfeld
Merge branch 'master' of ssh://repo
.
or
.
cz/
s
rv/git/trakem
2
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
Saalfeld
use an
d
do
not ignore al
p
ha
in help
e
r
m
ethod
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
use the new
sequen
t
ia
l
d
i
alogs in
"
mont
a
ge" for a selecti
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
S
t
ephan
S
aalfeld
Merge
b
r
anch
'ma
s
t
e
r
' of ssh://repo
.
or
.
c
z
/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan
S
aalfeld
fi
x
ed ran
g
e
check in
l
ayer alignm
e
n
t
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fixed
condition check i
n
Align
Layers for
regu
l
ariza
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
Merge branch 'master' i
n
t
o
regula
r
i
z
ed-af
f
in
e
commit
|
commitdiff
|
tree
2012-06-08
Stepha
n
Saalfel
d
d
o
n
ot consi
d
er
disconnect
e
d tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Saal
f
eld
Me
r
ge branch 'regu
l
arized
-
a
ffine' of ss
h
:
//re
p
o
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan Saalfeld
pre-align graphs and
match
o
n
l
y
o
verl
a
ppin
g
tiles
commit
|
commitdiff
|
tree
2012-06-08
S
t
ep
h
a
n
Saalfe
l
d
pre-align graphs and match only ov
e
rlappin
g
tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfel
d
ini
t
ializ
e
Tile models and
n
ot only pat
c
hes
i
n
a
lignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan S
a
alfeld
c
h
ange
d
alignGraph
s
in
p
ut collectio
n
s from Set to Iterabl
e
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Sa
a
lfeld
mak
e
sure that static para
m
e
t
ers
do not
over
r
ide each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
t
ephan Saalfeld
remove spurious
import
commit
|
commitdiff
|
tree
2012-06-05
Stephan S
a
alfeld
wor
k
ar
o
und Oracle ja
v
ac generics issue
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalfe
l
d
multi-layer-mosai
c
uses Param/P
a
ramOptimize
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an Saalfeld
mont
a
ge layers
uses ParamOpt
i
m
ize
.
s
etup in
s
t
e
ad of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
do not
fix a random ti
l
e if non
e
is fixed
commit
|
commitdiff
|
tree
2012-05-29
St
e
phan Saalfeld
C
o
nd
e
n
s
e
d
.
mai
l
map
commit
|
commitdiff
|
tree
2012-05-29
Steph
a
n
Saalfeld
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saa
l
feld
M
e
rge branch
'mast
e
r' into regulariz
e
d-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saa
l
feld
added *None* field to layer ra
n
ge reference
s
election
commit
|
commitdiff
|
tree
2012-05-21
Stephan
S
a
alfeld
split
A
lign
.
ParamOpt
i
mi
z
e
dialogs in pieces that
fi
t
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfel
d
ad
d
ed GenericAffineTile
2
D
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
ha
n
S
a
alfeld
generalize
d
A
b
stractAffin
e
T
ile2D generic parame
t
e
r
commit
|
commitdiff
|
tree
2012-05-15
S
tephan Saa
l
feld
t
r
a
c
k r
e
fac
t
oring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saa
l
feld
added regularized affine layer alignm
e
nt,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfel
d
fi
x
e
d
creat
e
Image(): use
premultiplied raster
commit
|
commitdiff
|
tree
2012-03-27
Stephan
Sa
a
lfeld
do not print the mipmap scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
lfeld
for now,
d
o
n
ot u
s
e
p
re-
m
ultiplied
alp
h
a since it does
.
.
.
commit
|
commitdiff
|
tree
next