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Merge branch 'intensity-transform'
2014-12-17
Stephan S
a
a
l
feld
Merge branc
h
'in
t
en
s
ity-transform'
commit
|
commitdiff
|
tree
2014-12-13
Step
h
a
n Saalfeld
bump
t
o ne
x
t deve
l
opm
e
nt
cycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan Sa
a
l
f
eld
r
e
producible
build pom-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Ste
p
h
a
n S
a
a
lfeld
Me
r
ge rem
o
te-trackin
g
branch 'origin/master
'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Sa
a
lfeld
bump to ne
w
d
e
velop
m
ent cycle
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
reprod
u
cible bui
l
d po
m
-trakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan
Sa
a
lfeld
Merge b
r
anch '
m
aste
r
' of github
.
com:trakem2/TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saa
l
f
eld
added ValueToNoise fil
t
er
which fills a g
i
ven intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Steph
a
n S
a
a
lfel
d
Upda
t
e README
commit
|
commitdiff
|
tree
2014-11-12
Stephan Saalf
e
ld
U
p
date R
E
ADM
E
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
M
erge branch 'master' into coordXfmFix
commit
|
commitdiff
|
tree
2014-11-07
S
te
p
han Saalfeld
Me
r
ge
r
emote-tr
a
cking
bran
c
h 'origin/intens
i
ty-tr
a
nsfor
m
'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
added
R
obustN
o
r
m
a
lizedLo
c
alContra
s
tFilt
e
r, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
Changed default
block rad
i
us in Norma
l
izeL
o
cal
C
ont
r
ast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n
S
aalf
e
ld
auto-remove
d
s
om
e
tra
i
ning wh
i
t
espa
c
es
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saalfeld
a
d
ded run m
e
t
h
od that
d
oes not
nee
d
a w
o
r
k
er for eas
i
er
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfe
l
d
a
u
to-removed so
m
e traili
n
g wh
i
tespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
parallelized intersect
i
on t
e
sts for pa
i
rOverlappi
n
gTiles
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han S
a
alfeld
auto-finali
z
e constant
properties and param
e
t
ers
in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
l
feld
threadsafe Utils
.
e
nsure
(
File)
commit
|
commitdiff
|
tree
2014-06-06
S
t
ephan Saalfe
l
d
fix
e
d
b
ug in ge
n
eratio
n
of alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan
Saa
l
feld
exte
r
nalize
d
Distorti
o
nCorrection
.
run to enable
c
a
llin
g
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
Eclips
e
autu-cosme
t
ics in DistortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfe
l
d
Mer
g
e br
a
nch 'master
'
into intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
h
a
n Saalfeld
use standard w
r
i
t
er for coordinatetran
s
forms
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Saal
f
eld
depend on jav
a
x
.
media for jai
commit
|
commitdiff
|
tree
2014-05-19
Stephan Sa
a
lfe
l
d
added method
s
fo
r
downsampling mo
r
e than one leve
l
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saalfe
l
d
repla
c
ed pl
u
gins
.
conf
i
g with the Fiji ve
r
sion
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalfe
l
d
Me
r
ge branch 'master'
o
f
ssh://
r
epo
.
or
.
cz/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Merge branch 'master' of ssh:/
/
repo
.
or
.
cz/
s
rv/
g
it/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
teph
a
n Sa
a
lfeld
Parallel pairOv
e
rlap
p
ingTiles di
d
not work and
r
e
ported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Sa
a
lfeld
Me
r
ge branch
'ma
s
ter'
of ssh:/
/
r
e
po
.
or
.
cz/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
re
-
added legacy optim
i
z
er for spring
m
es
h
es, this woul
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
T
2
-NIT/pom
.
x
m
l can inherit
versi
o
n numbe
r
from parent
commit
|
commitdiff
|
tree
2013-08-14
S
t
ephan Saalfe
l
d
added m
i
ssing d
e
pendencies to java3d cor
e
-
u
tils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Ste
p
ha
n
Saalfeld
set
parent pom of pom-tra
k
em2 to pom-fi
j
i
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
h
an Saalfeld
Merge branc
h
'spring
-
mesh
2
' of ssh://repo
.
or
.
cz
/
s
rv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han Saalfel
d
Merge b
r
an
c
h 'mast
e
r'
i
n
t
o
s
prin
g
-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan
Saalfeld
raised mp
i
cbg
de
p
endency version to 0
.
6
.
1-SNA
P
SHO
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
rais
e
d
dependenc
y
t
o Simple_Neurite
_
Trace
r
to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
e
phan Saa
l
fe
l
d
Merg
e
branch 'ma
s
t
er' in
t
o spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan
Saalfeld
added comments and auto-finalize in Distor
t
ionCorre
c
tion/N
L
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
ad
d
ed
m
picb
g
.
ver
s
ion as maven property
,
commit
|
commitdiff
|
tree
2013-05-06
Stephan
S
a
alfeld
track move o
f
the i
m
glib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saalfeld
Merge
bran
c
h 'm
a
ster
'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
S
t
eph
a
n Saalfe
l
d
Merge branch '
m
aster'
int
o
spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saalfeld
use arrayli
s
t whe
r
e arraylists are returne
d
commit
|
commitdiff
|
tree
2013-01-16
Step
h
an Saalfeld
adjust mpicbg spring-me
s
h2 w
h
ich
needs less damping
commit
|
commitdiff
|
tree
2013-01-11
Steph
a
n Saalfeld
Fixed
b
ug in Patch
.
getFul
l
CoordinateTransfor
m
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han Saalfeld
C
h
ang
e
d
fix
e
dPatches/Tiles inp
u
t collection to
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Pair c
o
nstructor has to be public
commit
|
commitdiff
|
tree
2013-01-10
S
t
epha
n
Saalfeld
forgot to set isAlign
e
d
f
l
ag in elastic
l
ayer alignme
n
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saal
f
eld
e
l
astic mo
n
tage par
a
m must be p
u
blic
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
added Patc
h
.
g
etF
u
llCordinateTransfo
r
m() w
h
ich generate
s
a
commit
|
commitdiff
|
tree
2013-01-07
S
t
ephan Saalfeld
*
r
em
o
v
ed isAligne
d
fro
m
Abstract Param clas
s
commit
|
commitdiff
|
tree
2013-01-05
S
t
e
phan S
a
alfeld
877: i
t
is leg
a
l for layerThing to b
e
null
commit
|
commitdiff
|
tree
2012-12-21
S
tep
h
a
n Saalfel
d
Corrected several long-sta
n
d
i
ng issues with
S
I
FT-
l
inear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
f
el
d
Re
g
ularizedLa
y
erAlignment got more
flex
i
ble API methods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saal
f
eld
cle
a
ring cache
in layer alignm
e
n
t
must be defa
u
l
t true
commit
|
commitdiff
|
tree
2012-12-19
S
t
ephan Sa
a
l
f
e
ld
prin
t
opt
i
mizer
res
u
lts and
d
o no
t
p
r
i
nt "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
do not
remove empty l
a
y
ers in la
y
er align
m
ent
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saa
l
feld
fixed versio
n
number of mpicbg
de
p
ende
n
c
y
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed merge error:
m
oved RobustNormalizeLocalCon
t
r
a
s
t
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stepha
n
Saalfel
d
m
ulti-threaded RobustNormalizeLo
c
alContrast ma
i
n bo
d
y
commit
|
commitdiff
|
tree
2012-09-01
Step
h
an Saalfeld
Re
m
o
ve
d
D
is
p
layCanvas
.
setDrawingColor(int,int
,
boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfe
l
d
Merge branch
'
master'
o
f ssh:
/
/repo
.
or
.
cz/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2012-08-31
S
tep
h
an
S
aalf
e
ld
added experimental local contrast
e
nhancer Robus
t
N
o
rma
l
izeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Ste
p
han
Saalfel
d
r
e
mov
e
d
obsol
e
te choice from align
l
ay
e
r
s
dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan
S
aalf
e
ld
s
p
lit
ela
s
ti
c
montage dialog for
b
loc
k
m
a
tching and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan
Saalf
e
ld
Mer
g
e b
r
a
n
ch '
m
a
s
t
e
r' of ssh://
r
epo
.
or
.
c
z
/
srv/git/trakem
2
commit
|
commitdiff
|
tree
2012-06-26
Stephan
S
aalfeld
use and do not i
g
n
ore alph
a
i
n helper m
e
t
h
od
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
u
s
e
the
n
ew
s
e
quential dia
l
ogs in "montage" for a sel
e
ction
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalf
e
ld
Merge branch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
fixed range check in layer a
l
i
gnme
n
t
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fixed
c
on
d
ition c
h
eck in Align
Layers for
reg
u
larization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
St
e
phan Saalfeld
Merge branch
'
maste
r
' i
n
to regularized
-
affine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do not consider
d
isconnecte
d
tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
Merge branch 'regulariz
e
d-affine' of
s
sh:
/
/r
e
po
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pr
e
-
a
lign graphs and match
only overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
aalfe
l
d
pre-align
gra
p
hs and match onl
y
overla
p
p
i
n
g tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
initialize Tile mo
d
e
ls and n
o
t o
n
l
y patches in a
l
ignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
change
d
a
lign
G
raphs
i
nput collections from
S
et to Iterable
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saalf
e
ld
ma
k
e
sure
t
hat static p
a
ram
e
ters do
not
over
r
i
d
e each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saal
f
eld
remove
s
p
urious impor
t
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfe
l
d
workaro
u
nd O
r
a
cle
j
a
vac ge
n
erics i
s
sue
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalf
e
ld
multi-layer-mosaic uses Param/ParamOptimize
.
s
etup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Saalfel
d
mo
n
t
age layers u
s
es ParamOpti
m
ize
.
s
e
t
u
p instead
o
f
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
d
o
not fix
a r
a
ndo
m
tile
if no
n
e i
s
fixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan S
a
al
f
eld
C
o
n
dens
e
d
.
m
ailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
A
d
d
ed
.
m
a
ilmap
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
Merge branch
'
m
a
s
ter'
into regularize
d
-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added *None*
field t
o
layer
range reference sel
e
ctio
n
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
s
plit Align
.
Para
m
Optimize dialogs in piece
s
that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saal
f
eld
added Gener
i
cAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
S
tephan Saalfeld
g
e
n
eralized Abstract
A
ffin
e
T
i
le2D gene
r
ic para
m
eter
commit
|
commitdiff
|
tree
2012-05-15
Ste
p
han Saalfe
l
d
t
rack ref
a
ctoring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Ste
p
h
a
n
Saalfeld
added re
g
ularize
d
affi
n
e layer ali
g
nment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan S
a
alfeld
fixed createI
m
age():
u
s
e premultiplied raster
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
ha
n
Saa
l
feld
do not
print the mipma
p
scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
aalfeld
for
now, do not use pre-multiplie
d
a
l
p
ha
s
in
c
e it does
.
.
.
commit
|
commitdiff
|
tree
next