repo.or.cz
/
trakem2.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
auto-removed some training whitespaces
2014-10-02
St
e
phan Saalfe
l
d
auto-removed some trainin
g
whitesp
a
ces
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saa
l
feld
added run method tha
t
do
e
s no
t
need a
w
o
r
k
e
r for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n
Saalfeld
aut
o
-remov
e
d
so
m
e trai
l
ing wh
i
tespaces
commit
|
commitdiff
|
tree
2014-10-02
S
t
e
p
h
a
n S
a
alfeld
parallelized intersection te
s
ts
f
or pairOverlappingTiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan
Saalf
e
l
d
auto-f
i
n
a
liz
e
co
n
sta
n
t
p
roperti
e
s
a
n
d pa
r
a
m
eters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
threadsafe
U
t
i
ls
.
e
nsure(
F
ile)
commit
|
commitdiff
|
tree
2014-06-06
S
tep
h
an Saalfeld
fixed
bug in generat
i
on of alpham
a
sks
commit
|
commitdiff
|
tree
2014-06-05
Step
h
an
Saal
f
e
l
d
exte
r
n
a
lized DistortionCorrec
t
ion
.
run t
o
enable calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfel
d
Eclipse autu-cosmetics in Di
s
t
ortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stephan S
a
alfeld
Me
r
ge b
r
anch 'm
a
ster' in
t
o
intensity-trans
f
orm
commit
|
commitdiff
|
tree
2014-05-19
S
te
p
han Saalfeld
us
e
standard writer for
c
oordinatet
r
ansfo
r
ms
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saalfel
d
re
p
laced pl
u
g
ins
.
config wit
h
th
e
Fiji versi
o
n
commit
|
commitdiff
|
tree
2013-09-20
Stepha
n
Saa
l
feld
M
er
g
e branch
'm
a
s
ter' of ssh
:
//repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Merge bran
c
h
'master
'
of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Paral
l
el pairOverlappin
g
Tiles did
not w
o
rk
a
n
d
reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan S
a
alfeld
Merge
b
ranch 'master'
o
f
s
s
h
://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan
Saalfeld
re-added
l
egacy optimi
z
er for
s
pring meshes, th
i
s
wo
u
l
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Saalfeld
T2-NIT
/
p
o
m
.
xml can in
h
e
rit version number from parent
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
added
m
i
ssing dep
e
ndencies to java3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
se
t
parent pom o
f
pom-t
r
akem
2
to pom
-
fiji
.
2
.
0
.
0
-
SN
A
PSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
alfeld
Merge bra
n
ch 'sprin
g
-mesh
2
' of
s
sh://repo
.
o
r
.
cz/
s
rv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n
Saalf
e
ld
Merge branch '
m
aster'
i
nto sp
r
ing-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
raised mpicbg dependency version
to 0
.
6
.
1
-
S
N
APSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfel
d
r
aised dependency to Si
m
ple_Neurite_Tracer
t
o
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Saalfeld
M
erge branch 'mast
e
r' int
o
spring-m
e
s
h2
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
a
alfeld
a
dded
c
omments
and auto-finalize in Distortion
C
orrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lfe
l
d
added mpicbg
.
v
e
rsion as mav
e
n property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan S
a
alfeld
tr
a
ck m
o
v
e of the imglib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
St
e
phan Saalfeld
Merge b
r
anch 'ma
s
ter
'
i
nto
s
pring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saalfeld
Mer
g
e
br
a
nch
'
mast
e
r'
into spring-mesh
2
commit
|
commitdiff
|
tree
2013-01-18
S
tephan Saalfeld
use arr
a
ylist where arraylists are re
t
urned
commit
|
commitdiff
|
tree
2013-01-16
S
t
e
phan Saalfeld
adjust mpicb
g
s
pring-mesh2 which n
e
eds less
d
amping
commit
|
commitdiff
|
tree
2013-01-11
Stephan
Saal
f
el
d
Fixed b
u
g
in Patch
.
getFullCoordinat
e
Transform th
a
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han Saalfeld
Changed fi
x
edPatches/Tiles input co
l
lect
i
on to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
Saalfeld
Pair con
s
tr
u
ctor has to be
public
commit
|
commitdiff
|
tree
2013-01-10
St
e
phan Saalfe
l
d
forgot t
o
set isAligned
f
l
a
g i
n
elastic layer alig
n
ment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
S
t
e
phan Saalfeld
ela
s
t
ic montag
e
p
a
ram must be
publi
c
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalf
e
ld
ad
d
ed Patch
.
getFul
l
Cordi
n
a
t
eTransform() which genera
t
es a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
* removed isAligned from Ab
s
t
r
act Param clas
s
commit
|
commitdiff
|
tree
2013-01-05
Stepha
n
Saalfeld
877: it is legal fo
r
lay
e
rThing to be n
u
ll
commit
|
commitdiff
|
tree
2012-12-21
S
teph
a
n
Saalfeld
Co
r
rec
t
ed several
l
ong
-
stan
d
ing issues with S
I
FT-linear
a
n
d
commit
|
commitdiff
|
tree
2012-12-19
Stephan Sa
a
lfeld
Regul
a
rize
d
La
y
erAlignment got mo
r
e flexible API methods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
cl
e
aring cache
i
n
layer
a
lignment
must be defau
l
t tru
e
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
print optimizer result
s
and do not pri
n
t
"matc
h
ing
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
t
ephan Sa
a
lf
e
ld
do not remove em
p
ty
la
y
e
rs
i
n la
y
er alignment
commit
|
commitdiff
|
tree
2012-11-07
Ste
p
han Saa
l
f
e
ld
fixed version nu
m
ber of mp
i
cbg dep
e
ndency
commit
|
commitdiff
|
tree
2012-11-07
Stepha
n
Saalfeld
fixed
m
er
g
e error: moved RobustNormalizeLoca
l
Contrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saa
l
feld
multi-threaded Robus
t
Nor
m
alizeLo
c
al
C
ontrast main bo
d
y
commit
|
commitdiff
|
tree
2012-09-01
Ste
p
han Saal
f
eld
Removed Dis
p
layCanvas
.
se
t
DrawingColor(int,
i
nt,bo
o
lea
n
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
Mer
g
e
b
r
anch 'mast
e
r' of ssh://repo
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
S
t
epha
n
Saalfeld
a
dded experimental local co
n
trast enhancer Robu
s
tNormali
z
eLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stepha
n
Saalfeld
re
m
ov
e
d o
b
s
o
lete choice
from align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
s
p
lit
e
l
astic montage dialog for block matchin
g
and use
commit
|
commitdiff
|
tree
2012-06-26
Step
h
an Saalfeld
Mer
g
e bran
c
h 'master'
of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saa
l
f
e
ld
us
e
an
d
do not ig
n
o
re al
p
ha in helper
method
commit
|
commitdiff
|
tree
2012-06-21
Step
h
a
n
Saal
f
eld
use th
e
n
e
w sequential dialogs in "m
o
nt
a
ge" for a s
e
lect
i
on
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan
Saalfeld
M
erge branch 'master' o
f
s
s
h://re
p
o
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Steph
a
n Saalf
e
l
d
fixed
ra
n
ge c
h
eck in layer al
i
gnm
e
nt
commit
|
commitdiff
|
tree
2012-06-14
S
t
e
phan Saalfeld
fixed condition
chec
k
i
n
Align Layers for regul
a
ri
z
ation
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan
Saalf
e
l
d
Merge
branch 'master' into regularized-affine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
e
l
d
do
not c
o
n
s
ider d
i
sconnected tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
a
alf
e
ld
M
erge branch
'regu
l
arized-a
f
fine'
o
f ssh://rep
o
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan
S
aalfel
d
pre
-
alig
n
grap
h
s an
d
match only overlapping
t
iles
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan Saalfeld
pre-align graphs and
m
a
tch
only overlapping ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan Saalfeld
initialize
T
ile models
a
nd not only patches in
ali
g
nGraphs
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
c
h
anged
ali
g
nGra
p
hs input
collections fr
o
m Set to Ite
r
able
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
aalfeld
make
sure that
stati
c
par
a
meters do
not
o
verride each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan
S
aalfel
d
remove
s
p
urio
u
s imp
o
rt
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
aalfeld
workaround Oracle
j
avac
generics i
s
sue
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Saalfeld
m
u
lti
-
laye
r
-mosaic us
e
s Param/Param
O
ptimize
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
aalfe
l
d
montag
e
l
ayers uses ParamOp
t
imiz
e
.
setu
p
instead o
f
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan Saalfeld
d
o not fi
x
a random tile if none is
f
ixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
Condensed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan
S
aalfel
d
Added
.
m
ailmap
commit
|
commitdiff
|
tree
2012-05-21
S
tephan Saalfeld
Merge branch 'master' into regulariz
e
d-
a
ffine
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
p
han Saalfeld
a
d
ded *No
n
e* field to layer rang
e
reference selection
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Saalfe
l
d
split
Alig
n
.
Para
m
O
p
t
imiz
e
dialogs
i
n pieces that
f
it
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
S
te
p
h
a
n
Saa
l
feld
added Gene
r
icAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
ge
n
eralized Abs
t
ractAffi
n
eTile2
D
generic parame
t
er
commit
|
commitdiff
|
tree
2012-05-15
Step
h
an
Saalfeld
track ref
a
c
toring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
S
t
ephan
Saa
l
fel
d
a
d
ded r
e
g
u
lar
i
zed affi
n
e
l
ayer a
l
ignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfeld
fixed cr
e
a
t
eImage(): use premultipl
i
e
d
ra
s
ter
commit
|
commitdiff
|
tree
2012-03-27
S
t
e
ph
a
n
S
aalfeld
d
o
not print
the mipm
a
p
s
cal
e
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Saa
l
feld
for now, do
n
o
t
use pre-multiplie
d
alpha si
n
ce it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saalfeld
Fixed wrong painti
n
g
of
P
atches w
h
en using a down
s
ampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfel
d
Downs
a
mplerMipMaps now consistentl
y
uses
c
ombined
d
o
wn
s
ampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tephan Sa
a
lfeld
fixed Dow
n
samplerMipMaps blending merged
alpha i
n
to
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Downsa
m
pl
e
r
t
es
t
still s
h
ows
i
t being
significantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
l
f
eld
F
ixed Down
s
amp
l
er: range
c
heck in byt
e
convers
i
on was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfel
d
Merge branch 'inte
g
ral' of ssh://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Steph
a
n
S
aa
l
feld
added missing package to F
a
k
efile
commit
|
commitdiff
|
tree
2012-03-08
St
e
phan
S
a
al
f
eld
Me
r
ge branch 'master' of ssh://repo
.
or
.
cz/srv
/
g
i
t
/
trakem2
commit
|
commitdiff
|
tree
2012-03-08
Stephan
Saa
l
feld
fi
x
local scale
e
stimate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added getLocalScale(x,y) method to Patch
commit
|
commitdiff
|
tree
2012-03-07
S
te
p
han Saalfeld
patch
d
oes not pro
p
agat
e
N
o
nInv
e
rtibleModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stepha
n
Saalfeld
Merge b
r
anch 'master'
o
f
s
sh://r
e
po
.
or
.
cz/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
han Saalfeld
added methods
t
o
fetch
t
he
c
l
os
e
st triangle of a tra
n
sform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
S
tephan Saalfeld
in the midd
l
e of
.
.
.
a
mend with
f
inal co
m
mit
commit
|
commitdiff
|
tree
2012-02-27
Ste
p
han Saalfe
l
d
demonstrate
b
yte conv
e
rs
i
on in an
ex
t
ra loo
p
to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
S
tephan S
a
alfe
l
d
Merge
b
ranch 'integral' of ssh://r
e
p
o
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
next