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auto-removed some training whitespaces
2014-10-02
S
t
ephan Saalfeld
auto-removed some training whitespac
e
s
commit
|
commitdiff
|
tree
2014-10-02
S
tephan S
a
alfeld
add
e
d
run met
h
od that doe
s
not
n
eed a worker
f
o
r easie
r
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an Saalfeld
a
u
to-removed some tra
i
l
i
ng whitespaces
commit
|
commitdiff
|
tree
2014-10-02
S
tep
h
an Saalfel
d
parallelized in
t
ersectio
n
tests fo
r
p
a
i
rOve
r
lap
p
i
ngTiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
aut
o
-finalize con
s
tant
p
rope
r
ties and
parameters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
threadsafe Uti
l
s
.
e
n
s
u
r
e
(
File)
commit
|
commitdiff
|
tree
2014-06-06
Steph
a
n
S
a
a
lf
e
ld
f
i
xed bug in generation of alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saa
l
f
e
l
d
external
i
zed Distort
i
onCo
r
rect
i
on
.
run t
o
ena
b
le calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan S
a
alfeld
Ecli
p
se a
u
tu-cosmetics in Di
s
t
ortionC
o
r
rec
t
ion
commit
|
commitdiff
|
tree
2014-05-19
Stepha
n
Saalfeld
Merge
bra
n
ch 'ma
s
ter' i
n
t
o
int
e
nsi
t
y-transfo
r
m
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
us
e
standard
writer for coordinate
t
r
a
ns
f
orms
commit
|
commitdiff
|
tree
2013-10-10
S
t
ephan Saalfeld
replaced plugins
.
config with
t
he Fiji
ver
s
i
o
n
commit
|
commitdiff
|
tree
2013-09-20
Ste
p
h
an Saalfeld
M
e
r
g
e
br
a
nch 'master
'
of ss
h
://
r
epo
.
or
.
cz/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
tephan Saalfe
l
d
Merge branch 'master' of
s
sh:
/
/rep
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stepha
n
S
aalfeld
P
aral
l
el
pairOverlap
p
i
n
gTiles did
not work
a
nd
reporte
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
St
e
phan Saalfeld
Me
r
ge
b
ranch 'master' of ssh
:
//repo
.
or
.
cz/sr
v
/
g
i
t
/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Saalfeld
re-ad
d
ed legac
y
op
t
imizer for spr
i
ng
m
eshes,
t
h
i
s
w
o
u
l
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Saalf
e
ld
T2-N
I
T/pom
.
xm
l
can inherit version number from
parent
commit
|
commitdiff
|
tree
2013-08-14
S
tephan Sa
a
lfeld
added missing dependencies to java3d
cor
e
-utils a
n
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan
S
aalf
e
ld
set parent p
o
m of pom-trakem2 to po
m
-
f
iji
.
2
.
0
.
0-SNAPSH
O
T
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Sa
a
l
fel
d
Merge bran
c
h
'spring-mesh2' of ssh://repo
.
or
.
cz
/
srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
M
e
rge
b
r
anch 'ma
s
ter' int
o
spr
i
ng-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saa
l
feld
r
a
ised mpicbg dependency v
e
r
sion t
o
0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfel
d
ra
i
sed d
e
p
endency to Simp
l
e
_
Neurite
_
Tra
c
er to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merg
e
branch 'master' in
t
o
spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Step
h
a
n
Saa
l
f
e
ld
add
e
d
comment
s
and auto-finalize i
n
DistortionCorrec
t
ion/
N
LT
commit
|
commitdiff
|
tree
2013-08-12
St
e
p
han Saalfe
l
d
added mpicbg
.
v
e
rsion as maven prope
r
t
y
,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saal
f
eld
trac
k
m
ove of th
e
imglib
1
dependency
commit
|
commitdiff
|
tree
2013-04-22
S
t
ephan
S
aalfeld
Merge
bra
n
ch 'master' into
sp
r
ing-
m
e
s
h2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Sa
a
lfeld
Merge branch
'
maste
r
'
i
nto spri
n
g
-
me
s
h2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saalfeld
use
arraylist
w
he
r
e a
r
raylist
s
are returned
commit
|
commitdiff
|
tree
2013-01-16
Steph
a
n Saalfeld
adjust
mpicbg spr
i
n
g-mesh2 which
n
eeds les
s
dampin
g
commit
|
commitdiff
|
tree
2013-01-11
Stepha
n
S
aalfe
l
d
Fixed bug in Patch
.
getFul
l
Coordi
n
a
t
eTransform
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saal
f
eld
Changed fixed
P
atches
/
Tiles input collect
i
on to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
S
t
eph
a
n S
a
alfeld
P
air constructor
ha
s
t
o
be public
commit
|
commitdiff
|
tree
2013-01-10
S
t
ephan S
a
alfeld
forgo
t
to set isAligned f
l
ag in el
a
stic
l
ayer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Sa
a
lfeld
ela
s
tic monta
g
e param must be public
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
added Patch
.
getFullCordinateTr
a
nsform() w
h
i
ch gen
e
ra
t
e
s
a
commit
|
commitdiff
|
tree
2013-01-07
St
e
phan Saalfeld
*
removed isAligned from Abstra
c
t Param cla
s
s
commit
|
commitdiff
|
tree
2013-01-05
St
e
phan Saal
f
eld
8
7
7: it is legal for
l
ayerTh
i
ng
to
be null
commit
|
commitdiff
|
tree
2012-12-21
Ste
p
han Saalfeld
C
o
rrected
s
everal
long-standing is
s
ues with SIF
T
-linear
a
nd
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n Saalfeld
R
e
gularizedLaye
r
Ali
g
nment got
mo
r
e
f
lexible
API
methods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfe
l
d
clearing cache in layer
alignment must be
d
efaul
t
tru
e
commit
|
commitdiff
|
tree
2012-12-19
S
tephan Saalfeld
print o
p
t
imizer
r
esu
l
t
s
and do not print "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Saalfeld
do n
o
t
r
e
m
ove empty layers in lay
e
r
alignment
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed versi
o
n
n
umber
of
mpic
b
g d
e
p
e
ndency
commit
|
commitdiff
|
tree
2012-11-07
Ste
p
han
S
aalfeld
fixed merge error
:
moved Robust
N
ormal
i
zeLocalContras
t
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saa
l
f
e
ld
multi-
t
h
r
e
a
de
d
RobustNo
r
malizeLocalContrast main
b
ody
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfel
d
Removed DisplayCan
v
as
.
setDrawi
n
gColor(int,int,boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Steph
a
n Saa
l
feld
Me
r
g
e
branch
'
master' of ssh://re
p
o
.
o
r
.
cz/s
r
v/git/tr
a
kem2
commit
|
commitdiff
|
tree
2012-08-31
St
e
ph
a
n Sa
a
lf
e
ld
ad
d
ed experimental
l
ocal contrast en
h
ancer
R
ob
u
stN
o
rmaliz
e
L
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
S
t
e
phan Saa
l
feld
removed
o
b
s
o
lete cho
i
c
e
from align layers
d
ia
l
og
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
Saalfe
l
d
split
e
last
i
c montage
d
i
a
l
og fo
r
bloc
k
ma
t
chin
g
a
n
d
use
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan Saalfeld
Merge
branc
h
'master' of
ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
use and do
not
i
gno
r
e alpha in help
e
r method
commit
|
commitdiff
|
tree
2012-06-21
S
t
e
phan
Saalf
e
ld
use the ne
w
sequenti
a
l dialo
g
s
i
n "
m
ont
a
ge"
for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Merge branch 'mast
e
r' of ssh:/
/
re
p
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan
S
aalfeld
fixe
d
r
ange check in l
a
yer align
m
ent
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saal
f
e
ld
fix
e
d condition check in Ali
g
n Layers for regu
l
a
rization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
Merge b
r
anch 'mast
e
r
' into regularized-affine
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfel
d
do not conside
r
disconnect
e
d tiles
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
Merg
e
branch 'regularize
d
-affine' of ssh://
r
epo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saa
l
fel
d
pre-align
g
raph
s
and match only overlapping t
i
les
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saalfeld
p
re-align
g
raphs and ma
t
ch o
n
ly overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
i
nit
i
alize
T
ile models and not only patches in alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfel
d
changed alignGraphs inpu
t
collecti
o
ns
from Set to Iterabl
e
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n
S
a
a
lfel
d
m
a
ke sure that static param
e
ters do
n
ot over
r
ide each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan Saalfeld
r
e
mov
e
spu
r
i
ous import
commit
|
commitdiff
|
tree
2012-06-05
Steph
a
n Sa
a
lfeld
w
o
r
k
around Or
a
c
l
e
ja
v
ac generics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan S
a
al
f
eld
multi-la
y
e
r
-mosaic uses
P
aram/
P
a
r
a
m
O
ptim
i
ze
.
setup(S
t
rin
g
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an
S
aalfeld
montage
l
ay
e
rs u
s
es Para
m
Optimize
.
setup in
s
tead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
h
an Saalfeld
do not fix a ra
n
d
om tile if none is fix
e
d
commit
|
commitdiff
|
tree
2012-05-29
Stephan
S
aalfeld
Condense
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
S
tephan Saalfeld
Add
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han S
a
a
l
feld
Merge
bran
c
h 'master'
into
r
egulariz
e
d-affine
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
phan
Saal
f
el
d
added *None
*
fiel
d
t
o laye
r
rang
e
reference selection
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
split Align
.
ParamOptimiz
e
dialo
g
s in pieces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
S
t
epha
n
Saal
f
eld
adde
d
Ge
n
eri
c
AffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Sa
a
lfel
d
g
e
n
era
l
iz
e
d
Abstrac
t
AffineTile2D g
e
ner
i
c par
a
mete
r
commit
|
commitdiff
|
tree
2012-05-15
Stepha
n
S
aalfeld
trac
k
refac
t
oring in mpi
c
bg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfeld
added regul
a
rized affine layer align
m
ent,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfeld
fixed c
r
eat
e
Image(
)
: use premultiplied
r
aster
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
do
n
o
t p
r
int the m
i
pmap scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
aalf
e
ld
for now,
do not u
s
e pre-multiplied alpha
s
i
n
ce
it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saalfeld
F
ixed wrong pai
n
tin
g
of Patches w
h
e
n using
a
do
w
nsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han
Saalfeld
Down
s
ampl
e
rMipMaps now co
n
sistently uses combined
d
ownsam
p
li
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n
S
a
alfeld
fixed
D
ownsample
r
MipMaps blendi
n
g
merge
d
alpha in
t
o
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
h
a
n S
a
alfeld
D
o
w
n
s
a
m
pler test still shows it being significantl
y
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
F
ixe
d
Downsampler: rang
e
ch
e
ck in byte con
v
ersion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saal
f
eld
Merg
e
br
a
nch 'int
e
gral' of ssh://re
p
o
.
or
.
c
z
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
added missing
p
ackage to Fakefi
l
e
commit
|
commitdiff
|
tree
2012-03-08
S
teph
a
n Saalfeld
Me
r
ge
b
ra
n
ch 'mas
t
er' of ssh:
/
/re
p
o
.
or
.
cz/
s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
S
t
ephan Saalfel
d
f
i
x
l
o
cal scale
e
s
timate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added
getLocalScale(
x
,y) method t
o
Patch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
pa
t
ch does not propagate NonInverti
b
leMode
l
Except
i
on
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan S
a
a
lfeld
Merge
b
ranch 'master' of ssh://repo
.
or
.
cz/srv/
g
it/tr
a
k
e
m2
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
ha
n
Saalfeld
added methods
to fetch the closest tria
n
gl
e
of a transform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Step
h
a
n S
a
alfeld
in the middle of
.
.
.
a
m
end wi
t
h final commit
commit
|
commitdiff
|
tree
2012-02-27
St
e
pha
n
Saalfel
d
demonstrat
e
byte con
v
ersion in an extra loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalf
e
ld
Merge branch 'integral' of ssh://repo
.
or
.
cz/
s
rv/git
.
.
.
commit
|
commitdiff
|
tree
next