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auto-removed some training whitespaces
2014-10-02
Stepha
n
Saalfe
l
d
auto-removed some trainin
g
white
s
paces
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an Saalfeld
added run metho
d
t
h
at does not need a worker
f
or ea
s
ier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
aut
o
-removed some trailing wh
i
t
e
spaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
aa
l
feld
parallelized intersection tests
f
or pair
O
verla
p
pingTiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalf
e
ld
auto-
f
ina
l
ize cons
t
ant properties and para
m
et
e
rs in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
St
e
phan
Sa
a
lfeld
threadsafe Utils
.
e
nsure(File)
commit
|
commitdiff
|
tree
2014-06-06
Step
h
an S
a
alfel
d
fixed bug in
g
eneration
o
f al
p
hamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan
S
aalfeld
extern
a
lized DistortionCorrect
i
on
.
ru
n
to enabl
e
cal
l
ing
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfel
d
Ecli
p
se
autu
-
cosm
e
tic
s
in Di
s
tortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
M
erge
b
ra
n
ch 'master' into intensity-transfor
m
commit
|
commitdiff
|
tree
2014-05-19
Step
h
an Saalf
e
ld
u
s
e standard wr
i
te
r
for
coord
i
natetransform
s
commit
|
commitdiff
|
tree
2014-05-19
Stephan S
a
a
l
f
e
ld
depend on ja
v
ax
.
media for jai
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Saalfel
d
added methods
for downsa
m
p
l
ing more tha
n
one level
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saalfeld
replaced plug
i
n
s
.
config
with
t
h
e Fiji v
e
rs
i
on
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalfeld
Me
r
ge branch
'master' of ssh://repo
.
o
r
.
cz/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Steph
a
n Saalfeld
Merge branch 'mast
e
r' of
s
s
h
://repo
.
or
.
cz/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Ste
p
han Saalfeld
Parallel
p
a
irO
v
erlappingTiles
d
i
d not
work
and
r
e
p
orted
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
t
ephan Saa
l
feld
M
e
rge branc
h
'
m
aster
'
of s
s
h:/
/
repo
.
or
.
cz
/
srv/git/tra
k
e
m2
commit
|
commitdiff
|
tree
2013-09-16
Stephan
S
a
alfeld
re-added legacy optimizer for spri
n
g me
s
hes
,
th
i
s wou
l
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Steph
a
n
S
aalfeld
T2-N
I
T/pom
.
xml can inher
i
t v
e
rsion number from
p
arent
commit
|
commitdiff
|
tree
2013-08-14
Stephan
Saalfeld
added missi
n
g
d
ependencies t
o
java3d core
-
utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
tephan Saalfeld
set p
a
rent pom
o
f pom-tr
a
kem2
t
o pom-fi
j
i
.
2
.
0
.
0
-SNAP
S
HO
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
a
a
lfeld
Merge
branch 'spring-mesh2' of ssh://
r
epo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge branch 'master' in
t
o spring
-
mesh2
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan
Saalfeld
rai
s
ed
m
picbg d
e
pendency ve
r
sion to 0
.
6
.
1
-SNAPS
H
OT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
rai
s
ed
d
e
pen
d
ency to S
i
mple_Neurite_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n
Saalf
e
l
d
Merge b
r
a
n
c
h
'master' i
n
to sp
r
i
ng-mesh2
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan Saalfeld
add
e
d comments and
auto-
f
inalize in D
i
stortionCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfeld
add
e
d mpicbg
.
version as maven property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saalfeld
track
m
ove of the imglib
1
dependency
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saalfel
d
Mer
g
e branch 'mas
t
e
r
' into sp
r
i
n
g
-
m
esh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Sa
a
lfeld
Merge branc
h
'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Steph
a
n Sa
a
lfeld
use
arraylist where arrayl
i
sts ar
e
returned
commit
|
commitdiff
|
tree
2013-01-16
Stephan
S
aa
l
feld
adjust mpicbg s
p
ring-mesh2 which nee
d
s les
s
dampi
n
g
commit
|
commitdiff
|
tree
2013-01-11
Stephan
S
aa
l
feld
Fixed bug in Patch
.
getFu
l
lCoordinateTran
s
for
m
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han
Saalfe
l
d
Cha
n
ged fixedPatches/T
i
l
es
i
nput
collecti
o
n
t
o
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
St
e
p
h
a
n
S
aal
f
eld
Pair constructor has to be
public
commit
|
commitdiff
|
tree
2013-01-10
Ste
p
han Saalfe
l
d
fo
r
g
o
t to
s
et isAligned flag
in elas
t
ic
layer
a
lig
n
ment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfeld
elastic mon
t
ag
e
pa
r
am must be
public
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfel
d
added
Patch
.
get
F
ullCordinateTra
n
sform(
)
which
gen
e
rates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
* re
m
oved isAligned f
r
om Abs
t
r
a
c
t
Param class
commit
|
commitdiff
|
tree
2013-01-05
St
e
phan Sa
a
lfeld
877:
it
i
s
l
e
gal f
o
r l
a
yerTh
i
ng to
be null
commit
|
commitdiff
|
tree
2012-12-21
S
t
ephan Saalfeld
Corrected sever
a
l long-standin
g
i
ssues
w
i
th SIFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
RegularizedLayer
A
l
i
g
nment g
o
t more
f
lexible A
P
I metho
d
s and
commit
|
commitdiff
|
tree
2012-12-19
Ste
p
han Saalfeld
clearing cache i
n
lay
e
r
alignm
e
nt must be defaul
t
true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
print optimizer results
a
n
d do n
o
t prin
t
"matchi
n
g
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan
S
a
alfe
l
d
d
o
n
ot remove empty layers in laye
r
align
m
ent
commit
|
commitdiff
|
tree
2012-11-07
Stephan S
a
alfeld
fix
e
d versio
n
number of mpicbg depen
d
ency
commit
|
commitdiff
|
tree
2012-11-07
Step
h
a
n Saalfeld
fixe
d
merge error: moved RobustNormaliz
e
Local
C
ontrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan
S
aal
f
eld
multi-threaded Robus
t
NormalizeLo
c
a
l
C
o
nt
r
as
t
main body
commit
|
commitdiff
|
tree
2012-09-01
S
tephan
S
aalfeld
Removed Di
s
playCanvas
.
setDr
a
win
g
Color(int,int,bool
e
an
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
S
t
ep
h
a
n Saalfeld
Merge br
a
nch 'master' of
s
sh://rep
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
S
tep
h
an
Saalfeld
a
dded experimental local contrast enhance
r
R
o
b
ustNormalizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan S
a
alfeld
removed obsolete ch
o
ice from a
l
i
gn
l
ayers di
a
log
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saa
l
fe
l
d
split
e
l
as
t
ic mont
a
ge d
i
alog
f
or block mat
c
hing and use
commit
|
commitdiff
|
tree
2012-06-26
Steph
a
n S
a
alf
e
ld
Merge branch '
m
aster' of ssh://
r
epo
.
or
.
cz/srv/g
i
t/tr
a
kem2
commit
|
commitdiff
|
tree
2012-06-26
St
e
p
han Saalfeld
use and do not igno
r
e alpha in he
l
per me
t
hod
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
use the new s
e
quenti
a
l
d
ialo
g
s in "montage"
for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Step
h
an Saalfel
d
M
e
rge branc
h
'master' of ssh://repo
.
o
r
.
cz/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saa
l
f
el
d
fixed range check in
layer
a
lignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fixed condi
t
i
o
n check in Align Layers for
r
egularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
St
e
phan
S
aal
f
e
l
d
Merge branch 'maste
r
' into
r
egulari
z
ed
-
a
ff
i
ne
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saa
l
f
e
ld
do
n
ot con
s
ider di
s
connected
ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
a
alfeld
Merge branch 'regulariz
e
d-affine' of ssh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan
Saalfe
l
d
pre-al
i
g
n
graphs and match o
n
ly overla
p
ping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
e
ld
p
r
e
-
a
l
ign
g
rap
h
s and
m
at
c
h
only over
l
apping ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
St
e
p
h
an Saalfe
l
d
i
n
iti
a
lize Ti
l
e
mod
e
l
s and not
onl
y
patches in alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an S
a
alfeld
changed alignG
r
aphs
i
n
put c
o
llections from Set to Iterable
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan Saalf
e
ld
make sure that static parameters
d
o not overri
d
e each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
t
e
p
han S
a
al
f
eld
remove spuri
o
us im
p
ort
commit
|
commitdiff
|
tree
2012-06-05
Stephan
Saalfel
d
workaro
u
nd
Oracle javac
gene
r
ics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
multi-
l
a
ye
r
-mosaic uses P
a
ram/ParamOptimize
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan Saalfe
l
d
montage lay
e
rs uses
P
a
ramOpt
i
m
ize
.
setup
instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalfeld
do not fix a random tile
i
f none is fixe
d
commit
|
commitdiff
|
tree
2012-05-29
S
t
eph
a
n
Saa
l
feld
Co
n
den
s
ed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
Adde
d
.
m
a
i
l
m
ap
commit
|
commitdiff
|
tree
2012-05-21
Stephan
S
a
alfeld
M
erge
b
ra
n
c
h 'mast
e
r' into regularized-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added *Non
e
* field t
o
laye
r
r
a
ng
e
reference selecti
o
n
commit
|
commitdiff
|
tree
2012-05-21
Stephan
S
aalfeld
s
plit Align
.
P
a
ramOp
t
i
mize dial
o
gs i
n
pieces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added
G
e
n
ericAffineTi
l
e
2
D
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
phan Saalfeld
gen
e
ralized
AbstractAffineTile2D
g
e
ner
i
c para
m
ete
r
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saa
l
feld
tr
a
ck refactoring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
S
tephan Saalfeld
added re
g
ularized affine layer a
l
ign
m
ent,
commit
|
commitdiff
|
tree
2012-03-28
St
e
p
han Saal
f
eld
f
i
xed createImage(): use premultiplied raster
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
d
o
n
o
t
print the m
i
pmap
s
cale
commit
|
commitdiff
|
tree
2012-03-27
St
e
p
h
a
n
Saalfeld
for now, do not use pre-m
u
ltiplied alph
a
since it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan S
a
al
f
eld
Fi
x
ed wrong
pa
i
nting of Patch
e
s w
h
en using a downsa
m
pler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
p
h
a
n
S
a
alfeld
DownsamplerMipMaps n
o
w co
n
sis
t
ently uses combined downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n S
a
a
l
feld
f
ixe
d
Do
w
n
s
ampler
M
ipMaps
blending mer
g
ed
a
lph
a
into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan
S
a
alfeld
Downsamp
l
er test s
t
ill shows
i
t b
e
i
n
g
significant
l
y
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n
S
a
a
l
f
eld
Fixed D
o
wnsampler: r
a
n
g
e
check in byte
c
onversion wa
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
M
e
rge bra
n
ch '
i
ntegral' of ssh://repo
.
or
.
cz/s
r
v
/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
St
e
phan Saalfeld
adde
d
missi
n
g pa
c
kage t
o
Fakefile
commit
|
commitdiff
|
tree
2012-03-08
Step
h
an Saalf
e
l
d
Me
r
ge branch 'master' of ssh://repo
.
or
.
c
z
/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
St
e
pha
n
Saalfeld
fi
x
loca
l
s
c
ale est
i
mate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Sa
a
l
f
eld
a
d
ded
g
e
tLocalScale(x,y) method to P
a
tch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Sa
a
lfeld
patch doe
s
n
o
t propaga
t
e NonIn
v
e
rtibl
e
Mod
e
lException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
han Saalf
e
ld
Merge b
r
anch 'master' of ssh
:
/
/
repo
.
or
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2012-03-07
Step
h
an
S
aalfeld
added
meth
o
ds to fetch the closest tri
a
ngl
e
o
f
a
tr
a
n
sfo
r
m
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Ste
p
han
Saalfeld
i
n the middle o
f
.
.
.
ame
n
d with final co
m
mit
commit
|
commitdiff
|
tree
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