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auto-removed some training whitespaces
2014-10-02
Stepha
n
Saal
f
eld
auto-rem
o
ved so
m
e training whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saalfeld
added run method th
a
t
d
oes not need a worker f
o
r easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saal
f
eld
auto-remove
d
some tr
a
iling w
h
ites
p
a
ces
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
S
a
alfeld
parallelized
intersection t
e
sts for pairOverlapping
T
i
les
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan
S
aalfel
d
auto-final
i
ze constant properties and parameters
in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalfel
d
th
r
e
a
d
safe Utils
.
ens
u
re(F
i
le)
commit
|
commitdiff
|
tree
2014-06-06
St
e
phan Saa
l
fel
d
f
ixed bug
in generati
o
n o
f
alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
ext
e
rn
a
lized DistortionCor
r
ection
.
run to enable calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stepha
n
Saalfeld
Eclipse
a
utu-cosmetics in D
i
stortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Step
h
an
S
a
alfeld
Merge branch
'
m
aste
r
'
i
nto inten
s
ity-transform
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
han
Saalfeld
use standard writer
f
or coordina
t
etransforms
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
dep
e
nd
on javax
.
media for j
a
i
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
added method
s
f
o
r downsampling more than one
l
e
v
el
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saal
f
eld
replac
e
d plugins
.
config
w
ith the
F
i
ji version
commit
|
commitdiff
|
tree
2013-09-20
S
tephan Sa
a
lfeld
M
erg
e
branch 'master'
of ssh://repo
.
or
.
c
z/s
r
v/git
/
trakem2
commit
|
commitdiff
|
tree
2013-09-19
St
e
phan Sa
a
lfeld
Mer
g
e
branch
'master' of ssh://re
p
o
.
or
.
cz/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
t
ephan Saalfeld
Parallel pa
i
rO
v
erlapp
i
ngTiles did not work and repo
r
t
e
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Steph
a
n Saalfeld
Merge
b
r
a
nch '
m
aster' of ss
h
://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
re-added legacy
o
p
t
imizer for spring m
e
s
h
es,
t
his would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Steph
a
n Saalfeld
T2-NIT/pom
.
x
m
l
can inherit version number from parent
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
added
missing d
e
p
e
ndenci
e
s t
o
java3d core-
u
tils
a
nd
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an Saalfeld
set parent
pom of po
m
-trakem2 to pom-fiji
.
2
.
0
.
0-SNAPSH
O
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge branch 'spring-
m
e
sh2' o
f
ssh:/
/
repo
.
or
.
cz
/
srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge
branch
'mas
t
er' into spring-mesh
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan
Saalfeld
raised mpicbg dependency ve
r
sion
t
o 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan S
a
alf
e
ld
raised depe
n
dency to Simple
_
Ne
u
r
i
te_Tracer
t
o 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Sa
a
lfel
d
M
e
rg
e
branch 'master' into
s
pring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Sa
a
lfel
d
added comments and
auto-f
i
n
alize i
n
Distortio
n
Correction/NLT
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han
Sa
a
lf
e
ld
added mpicbg
.
ver
s
ion as maven proper
t
y,
commit
|
commitdiff
|
tree
2013-05-06
Stephan S
a
alfeld
t
r
a
c
k mov
e
of the img
l
i
b
1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Steph
a
n Sa
a
lfel
d
Merge br
a
nch 'ma
s
t
er' into spring-m
e
sh
2
commit
|
commitdiff
|
tree
2013-03-05
St
e
phan
S
aalfeld
M
e
rge branch '
m
as
t
er' in
t
o
spring
-
mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saalfeld
use arr
a
yl
i
st wh
e
re
arraylist
s
are returned
commit
|
commitdiff
|
tree
2013-01-16
Stepha
n
Saalfeld
adjust mpicbg spri
n
g-mesh2 which needs les
s
damping
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfel
d
F
i
xe
d
bug in
Pa
t
c
h
.
getFull
C
oo
r
dinateTransform th
a
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stepha
n
Sa
a
lfeld
C
h
anged fix
e
dPatches/
T
iles input
c
ollection to S
e
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
alfeld
P
a
ir construct
o
r has
t
o be public
commit
|
commitdiff
|
tree
2013-01-10
Stepha
n
Saalfeld
forgo
t
to set isAli
g
ned flag in elastic layer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Ste
p
han Saalfeld
elast
i
c mont
a
g
e
par
a
m
m
ust be
pu
b
lic
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
a
dded Patch
.
g
etFullCordinateTransform() which generates a
commit
|
commitdiff
|
tree
2013-01-07
Stepha
n
Saalfeld
* rem
o
ved isA
l
igned from A
b
st
r
a
c
t P
a
ram cla
s
s
commit
|
commitdiff
|
tree
2013-01-05
Steph
a
n Saal
f
eld
87
7
: it is legal for layerThin
g
to be null
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saal
f
e
l
d
Corrected
s
everal lon
g
-sta
n
din
g
issues wit
h
S
IFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alfel
d
Regulari
z
edLayerA
l
i
g
nment g
o
t mo
r
e
flexi
b
le API methods and
commit
|
commitdiff
|
tree
2012-12-19
Step
h
a
n Saalfeld
cleari
n
g
cac
h
e
i
n
layer alig
n
m
en
t
must
b
e
default
true
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alf
e
ld
print optimizer
r
esults
and do not p
r
int "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Sa
a
lf
e
ld
do
not remove empty
l
ayers in
layer alignment
commit
|
commitdiff
|
tree
2012-11-07
Steph
a
n Saalfeld
f
ixed v
e
rsion number of mpicbg dependen
c
y
commit
|
commitdiff
|
tree
2012-11-07
St
e
phan Saalfeld
f
ixed m
e
rge error: moved
RobustN
o
rmalizeLocalCon
t
r
ast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
t
epha
n
S
a
alfeld
multi-threa
d
ed
RobustNo
r
malizeLocalContrast main body
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalf
e
l
d
Remov
e
d Displ
a
yCanvas
.
setDra
w
in
g
Color(i
n
t,int,bool
e
an
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
Me
r
ge branch 'ma
s
t
e
r
'
of ssh://repo
.
or
.
c
z
/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
add
e
d e
x
perimental loca
l
cont
r
as
t
enhancer Robu
s
t
N
orma
l
iz
e
Lo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Step
h
an
S
aalfeld
removed o
b
solete choice
f
r
o
m align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan Saalfeld
split elastic montage
d
ialog for block matchi
n
g and us
e
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
Merge branch 'master'
o
f ssh://repo
.
or
.
cz/s
r
v/git/trake
m
2
commit
|
commitdiff
|
tree
2012-06-26
S
t
e
phan Saalfeld
use and
d
o
n
ot ig
n
ore alpha in helper method
commit
|
commitdiff
|
tree
2012-06-21
Stephan
S
aalfeld
use the
new se
q
uent
i
al dialog
s
in
"
m
o
ntage" for a selec
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Merge branch 'master' o
f
ssh:
/
/repo
.
or
.
cz
/
srv
/
git/trake
m
2
commit
|
commitdiff
|
tree
2012-06-20
S
t
e
ph
a
n Saalfeld
f
i
xed range chec
k
in layer alignm
e
n
t
commit
|
commitdiff
|
tree
2012-06-14
Stephan S
a
alfel
d
fixed con
d
it
i
on check in Align Layers for regulari
z
ation
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfe
l
d
M
e
rge branch 'mas
t
er' into regula
r
ized-affine
commit
|
commitdiff
|
tree
2012-06-08
S
t
epha
n
Saalfeld
do not consi
d
er disco
n
nected t
i
l
es
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
han Saalf
e
ld
Merge branch 'regularized-
a
f
fine' o
f
ssh://re
p
o
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
ld
pre
-
ali
g
n grap
h
s and match only over
l
apping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-align g
r
aphs
a
nd ma
t
ch only overlapping
t
ile
s
commit
|
commitdiff
|
tree
2012-06-08
S
t
e
phan Sa
a
lfeld
in
i
t
ialize
T
ile models and not onl
y
patche
s
in alignGra
p
hs
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Sa
a
lfeld
c
h
a
nged alignGraphs input collections from Set to Iterable
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
e
l
d
ma
k
e sure th
a
t
static paramet
e
rs d
o
n
o
t override each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
a
a
l
feld
remove spu
r
i
ous
import
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
workaround Oracle
ja
v
ac
ge
n
erics issue
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan
S
aalfeld
m
ulti-layer-mosaic uses
P
a
ra
m
/ParamOptimiz
e
.
setup(Strin
g
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saa
l
feld
m
ontage layers u
s
es
ParamOptimize
.
s
e
t
u
p instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
p
han Saalf
e
ld
do
not fix a random tile i
f
non
e
is fixed
commit
|
commitdiff
|
tree
2012-05-29
Ste
p
han Saal
f
e
ld
Co
n
densed
.
mail
m
ap
commit
|
commitdiff
|
tree
2012-05-29
Steph
a
n
Saalf
e
ld
A
dded
.
m
a
i
lmap
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saalfeld
Me
r
ge branch '
m
aster' into regula
r
iz
e
d-
a
f
fine
commit
|
commitdiff
|
tree
2012-05-21
Step
h
a
n
Saalfeld
added *
N
one* fi
e
ld to layer
r
ange
reference selectio
n
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saal
f
eld
split A
l
ign
.
ParamOpti
m
ize dialogs
in pieces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfe
l
d
ad
d
e
d GenericAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfel
d
generalized Ab
s
tra
c
tAffine
T
ile2D generic
p
arameter
commit
|
commitdiff
|
tree
2012-05-15
S
t
ephan Saalfeld
tra
c
k refac
t
or
i
ng in
m
pic
b
g
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfeld
add
e
d r
e
gularized affine layer alignmen
t
,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saa
l
feld
f
i
xed creat
e
Image(): use p
r
e
m
u
ltiplied raster
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saa
l
feld
do not pr
i
nt
the m
i
pmap scale
commit
|
commitdiff
|
tree
2012-03-27
S
t
epha
n
Saalfel
d
for
n
ow, d
o
not u
s
e p
r
e
-
multipl
i
e
d alpha sin
c
e it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fix
e
d wro
n
g painting of Pa
t
c
hes when usin
g
a downsa
m
pler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saalfeld
DownsamplerM
i
pMaps now
c
onsistently uses combi
n
ed downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n Saalfe
l
d
fi
x
ed Down
s
amp
l
erMipMaps
b
l
e
nding merged alpha
into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Downsampler
t
e
s
t still s
h
ow
s
it be
i
ng sig
n
ificantl
y
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n Saalfeld
Fixed Downsample
r
:
r
a
nge check i
n
b
y
te conversion w
a
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n Saalf
e
l
d
M
erge branc
h
'inte
g
ral' of
ssh://repo
.
or
.
cz/sr
v
/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
added missing package t
o
Fakef
i
le
commit
|
commitdiff
|
tree
2012-03-08
S
t
ephan Sa
a
lfeld
Merge
b
r
anch 'master
'
o
f
ssh://repo
.
or
.
cz/srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2012-03-08
Stephan
S
aalfeld
fi
x
lo
c
al sca
l
e estim
a
te
commit
|
commitdiff
|
tree
2012-03-07
Step
h
a
n
Saal
f
eld
a
dd
e
d ge
t
LocalScal
e
(
x
,
y)
me
t
hod to Patch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
patch does not propa
g
ate NonInve
r
tibleModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
Merge branc
h
'master' of ssh://repo
.
o
r
.
c
z
/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan
Saalfeld
added
methods to fetch
t
he
closest triangle of a transform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
S
t
ephan Saalfel
d
in the middle of
.
.
.
a
men
d
with
final commit
commit
|
commitdiff
|
tree
next