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Merge commit 'origin/ict' into ict
2009-01-07
Albert Cardona
M
e
rge
c
om
m
i
t 'origin/ic
t
' into ict
commit
|
commitdiff
|
tree
2009-01-07
Albert Cardona
Fix
e
d re
g
arding alpha mask
s
and mipmaps
.
commit
|
commitdiff
|
tree
2009-01-06
Albe
r
t Cardona
Fix
e
d
Patch
.
setAlphaMask
.
Works great
.
commit
|
commitdiff
|
tree
2009-01-06
Albert
Cardona
Exp
e
rimental support for a
r
bitrary alpha m
a
sks
o
n images
.
commit
|
commitdiff
|
tree
2008-12-23
Albert Cardona
Now
a
ll JFrame show the correc
t
Fij
i
or ImageJ icon
.
commit
|
commitdiff
|
tree
2008-12-23
Al
b
ert Cardona
Fixed repainting of
navigato
r
when cha
n
ging
t
he snapshots
.
.
.
commit
|
commitdiff
|
tree
2008-12-23
Alber
t
C
a
rdona
I
mageSaver
.
saveAsJp
e
gAlpha now uses the given qualit
y
.
.
.
commit
|
commitdiff
|
tree
2008-12-18
Alb
e
rt Cardona
Fixed horr
i
bl
e
bug
wi
t
h RGB
image
generation
o
f mipmaps
.
commit
|
commitdiff
|
tree
2008-12-18
Albert
C
ardona
Survi
v
e a negative or NaN magnificatio
n
:
r
eturn mipmap
.
.
.
commit
|
commitdiff
|
tree
2008-12-18
Albert C
a
rdona
Fixed cho
i
c
e of mipmap leve
l
(the
magnifica
t
ion
,
a
c
tuall
.
.
.
commit
|
commitdiff
|
tree
2008-12-18
Albert Cardona
Getting
p
ixel
from mipmap
d
o
e
s not use ImagePlu
s
if
.
.
.
commit
|
commitdiff
|
tree
2008-12-17
Alb
e
rt
C
ar
d
ona
Now scaled up imag
e
s paint at
t
he
i
r m
a
ximum pixel re
s
olu
t
ion
.
.
.
commit
|
commitdiff
|
tree
2008-12-17
Albert C
a
rdo
n
a
Ad
d
ed pro
p
er an
a
lytical compu
t
ation
o
f
m
aximum mipmap
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
A
l
bert C
a
rdona
Fixed RGB imag
e
s
mipm
a
ps: not small
e
r t
h
an
3
2x32 (wa
s
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
Al
b
ert Ca
r
dona
Fixed LU
T
i
mages
mi
p
ma
p
generatio
n
.
commit
|
commitdiff
|
tree
2008-12-16
A
lbert
Cardon
a
Rewrote Ar
e
aList hea
d
er i
n
fo
.
commit
|
commitdiff
|
tree
2008-12-16
A
lbert Ca
r
dona
M
ore c
o
mmen
t
s
for
API generation
.
commit
|
commitdiff
|
tree
2008-12-16
Albert C
a
r
do
n
a
A
djuste
d
comments f
o
r API generation
.
commit
|
commitdiff
|
tree
2008-12-16
Al
b
ert Cardona
R
e
moved a T
h
r
e
ad
.
y
ield from offscreen thread in DisplayCanva
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
Albert Cardona
Expor
t
l
i
st of link i
d
s as
s
or
t
ed, so r
e
saving a
f
ile
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
Alb
e
r
t Car
d
ona
O
n
mouse
m
oved,
r
ead the p
i
xel fro
m
t
he
mipmap im
a
ge
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
A
l
bert Cardona
R
em
o
ved T
O
DO mes
s
age
f
rom FSLoader
.
M
i
pmaps w
i
th alpha
.
.
.
commit
|
commitdiff
|
tree
2008-12-15
Al
b
ert Ca
r
dona
Fix
e
d s
u
btle
b
ug in restoring alph
a
c
o
mposite in Patch
.
.
.
commit
|
commitdiff
|
tree
2008-12-15
Albe
r
t C
a
rdona
Can't setCoo
r
d
i
nateTransform
to
a
Patch if it's l
i
nked
.
commit
|
commitdiff
|
tree
2008-12-15
A
l
bert Ca
r
dona
Pro
p
er restori
n
g
of AffineTransform
o
f
Patch w
h
en
r
emoving
.
.
.
commit
|
commitdiff
|
tree
2008-12-15
Albert Cardona
Rem
o
ved updateMipmaps() cal
l
from inside Patch
.
setCoordinate
.
.
.
commit
|
commitdiff
|
tree
2008-12-15
Albe
r
t
C
ardon
a
A
d
ded a
D
i
s
p
lay
.
repaint
(
)
t
hat repai
n
ts all D
i
splays
.
commit
|
commitdiff
|
tree
2008-12-15
A
l
bert C
a
rdon
a
Fixed shadow borde
r
pro
b
le
m
in mipmap
s
orig
i
nating
.
.
.
commit
|
commitdiff
|
tree
2008-12-14
Albert Cardona
A
ttempted to remove black e
d
g
e
pro
b
l
em with
an
erosi
o
n
.
.
.
commit
|
commitdiff
|
tree
2008-12-14
Albert Cardona
Usi
n
g interpolation for creating image with CoordinateT
r
ansform
.
commit
|
commitdiff
|
tree
2008-12-14
Albe
r
t Cardona
Ad
d
ed supp
o
r
t
f
o
r Coo
r
dinateTransform and h
a
rdware
.
.
.
commit
|
commitdiff
|
tree
2008-12-14
Albert Cardona
Grayscale im
a
g
e
s
u
pport fo
r
Coordi
n
ateTransfo
r
m
.
commit
|
commitdiff
|
tree
2008-12-13
Albert Cardona
CoordinateTransform-ed RGB
i
ma
g
es alread
y
have pro
p
er
.
.
.
commit
|
commitdiff
|
tree
2008-12-13
Albert Cardona
Many
f
ixes for Coordina
t
e
T
ran
s
fo
r
m suppo
r
t --
almost
.
.
.
commit
|
commitdiff
|
tree
2008-12-13
Al
b
ert Cardona
Made lots o
f
ge
n
e
r
ic-sty
l
e loops
v
a
r
iable
f
inal
.
commit
|
commitdiff
|
tree
2008-12-12
Albert Cardo
n
a
Imp
l
emented par
t
i
al sup
p
ort
f
or
Coordinate
T
ransforms
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
A
l
bert Cardona
Tempora
r
y step towards
CoordinateTransform support
.
commit
|
commitdiff
|
tree
2008-12-12
Albert Cardona
First st
e
ps towards
C
oordinateTra
n
sform support in
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
Albert Cardona
Added unte
s
ted
method
t
o paint a
p
ipe (
a
p
proximated
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
A
l
bert Car
d
ona
Proper
l
y set the f
i
rst
va
l
ue of
the
depende
n
t arrays
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
Albert
C
ard
o
na
M
a
de som
e
cl
a
sses fin
a
l--
t
hose that won't
e
ver need
.
.
.
commit
|
commitdiff
|
tree
2008-12-08
Albert Cardona
G
e
ne
r
ali
z
ed P
r
ojecTr
e
e
.
insertS
e
gmentatio
n
s
method signatur
e
.
commit
|
commitdiff
|
tree
2008-12-08
A
l
bert C
a
rdona
Patched 3D ori
e
ntation p
r
oblems o
f
the
Z
axis when
.
.
.
commit
|
commitdiff
|
tree
2008-12-08
Albert Cardo
n
a
Ad
a
p
t
ed Polyline to th
e
n
e
w tra
c
ing
.
Path API
.
commit
|
commitdiff
|
tree
2008-12-08
Albe
r
t Ca
r
dona
Addi
n
g f
e
a
t
ure "Import la
b
els as arealist
s
.
.
.
"
commit
|
commitdiff
|
tree
2008-12-08
Albert Card
o
na
Adaptin
g
Display
3
D to the new 3
D
Viewer API
.
commit
|
commitdiff
|
tree
2008-12-03
Albert Card
o
n
a
Add
e
d
debugging s
t
r
ings
.
commit
|
commitdiff
|
tree
2008-12-03
Albert
C
ar
d
ona
R
ew
r
i
tt
e
n a
b
it
o
f
the logic in
the
h
om
o
genize
c
ontrast
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
A
l
bert Cardona
Now the ContrastEnhanc
e
r dial
o
g does not sho
w
when
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
Albert Cardona
Added p
r
operties t
o
a Worker thread
.
commit
|
commitdiff
|
tree
2008-11-20
Albert
C
a
rdona
Made pix
e
l
g
r
a
b
bing dire
c
t
ly on the ImagePlus when
.
.
.
commit
|
commitdiff
|
tree
2008-11-20
Al
b
ert
Ca
r
dona
Reworke
d
a
b
i
t
t
h
e
get
P
ixel functi
o
nalit
y
, so t
h
a
t
.
.
.
commit
|
commitdiff
|
tree
2008-11-20
Albert C
a
rd
o
na
Enabl
e
d level 0 mipm
a
p
s
.
commit
|
commitdiff
|
tree
2008-11-20
A
l
bert Card
o
n
a
Add
e
d setVisible support for
P
olyline
commit
|
commitdiff
|
tree
2008-11-20
Albert
C
ardona
Added hi
d
e/unhide for Polyline
(
oops!)
commit
|
commitdiff
|
tree
2008-11-19
Albert
C
ardon
a
Remove
d
d
e
bugg
i
ng s
t
rings
.
commit
|
commitdiff
|
tree
2008-11-19
Alber
t
Cardona
F
i
x
ed res
a
m
pling in Compare for
3
D
vi
s
ualization
.
commit
|
commitdiff
|
tree
2008-11-19
Albert
C
a
rdona
Fixed doc typo
.
commit
|
commitdiff
|
tree
2008-11-19
Albert
C
ardona
Enabl
e
d
a
daptive
resampling relative to Calibratio
n
.
.
.
commit
|
commitdiff
|
tree
2008-11-19
Alber
t
C
ardona
Made MAX_
A
HEAD points adaptable to the ratio of the
.
.
.
commit
|
commitdiff
|
tree
2008-11-19
A
l
b
e
rt Cardona
Forgot class
ZDisplaya
b
le
commit
|
commitdiff
|
tree
2008-11-19
Albert Card
o
na
S
t
art
e
d
FallLine, aft
e
r
s
uggestion fro
m
Davi Bock at
.
.
.
commit
|
commitdiff
|
tree
2008-11-19
A
l
bert C
a
rdona
Fixed er
r
ors
i
n
h
a
n
dl
i
ng FreehandPr
o
file-relate
d
event
s
.
commit
|
commitdiff
|
tree
2008-11-16
Albert Car
d
ona
Fix
e
d k
e
yPressed
problem -
-
sync
h
.
.
.
commit
|
commitdiff
|
tree
2008-11-16
Albert Cardon
a
R
e
worked j3d lib-c
h
e
c
king logic
.
commit
|
commitdiff
|
tree
2008-11-16
Alber
t
Cardona
ROIs
c
and '
A
'-add and 'D'-subtract from sele
c
ted AreaList
.
commit
|
commitdiff
|
tree
2008-11-15
A
l
bert Ca
r
dona
P
atched critical bug in D
i
spla
y
3
D
: was showing many
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
Albert Car
d
ona
Added
'
al
t
'
key to a
u
to
s
impl
i
fy
the
la
s
t autotraced
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
A
lbert Cardona
Moved out
the distance
static methods
.
commit
|
commitdiff
|
tree
2008-11-14
Albert Ca
r
dona
Added M cla
s
s: ma
t
h methods for e
u
clidean dis
t
ances
.
.
.
commit
|
commitdiff
|
tree
2008-11-13
A
lb
e
rt C
a
rdona
Now adjusting
t
h
e v
i
rtualizat
i
on
m
ax dimensi
o
n w
i
ll
.
.
.
commit
|
commitdiff
|
tree
2008-11-13
Albert Cardona
Small
fixes
for
Polyline: now PENCIL c
a
l also drag
.
.
.
commit
|
commitdiff
|
tree
2008-11-13
Albert C
a
rdona
Version
0
.
6a
commit
|
commitdiff
|
tree
2008-11-13
Albert Cardo
n
a
Remov
e
d debugging me
s
sage
s
.
commit
|
commitdiff
|
tree
2008-11-13
Albert Cardona
Prop
e
r removal of left-over
d
at
a
w
h
e
n
c
l
o
si
n
g a proj
e
ct
.
commit
|
commitdiff
|
tree
2008-11-13
Alber
t
Car
d
o
na
Commented out d
e
bugging
m
essages
.
commit
|
commitdiff
|
tree
2008-11-13
Alb
e
r
t
Cardona
Fixin
g
automatic s
e
a
r
ch for
axes
.
commit
|
commitdiff
|
tree
2008-11-13
Albert Car
d
ona
Polyl
i
ne reuse
s
the hessian acro
s
s multiple instance
s
.
.
.
commit
|
commitdiff
|
tree
2008-11-13
Albert Cardona
Releas
e
s m
e
mory
b
e
fore retur
n
ing the image arr
a
y from
.
.
.
commit
|
commitdiff
|
tree
2008-11-13
Albert Cardona
Enable
d
3D rende
r
ing for P
o
ly
l
i
ne
.
commit
|
commitdiff
|
tree
2008-11-13
Albert
Cardona
Added polyline as a b
a
s
i
c typ
e
.
commit
|
commitdiff
|
tree
2008-11-13
Albert
C
ardona
Fixed polyline once
m
ore
.
commit
|
commitdiff
|
tree
2008-11-13
Albert Cardona
F
i
xed mos
t
of
the aut
o
tracing for Polyline
.
commit
|
commitdiff
|
tree
2008-11-13
A
l
bert Ca
r
dona
Added support
f
o
r Volume V
i
ewer and 3D Viewer: awesome!
commit
|
commitdiff
|
tree
2008-11-13
Albert
Cardona
Added support for LayerStack
.
g
etImage
A
rra
y
, whi
c
h
i
s
.
.
.
commit
|
commitdiff
|
tree
2008-11-12
Albert Cardona
More fixes for vir
t
ual
LayerStack
.
commit
|
commitdiff
|
tree
2008-11-12
Alber
t
C
ar
d
o
n
a
Fixed i
s
su
e
s w
i
th
v
i
rtual Layer stacks
.
commit
|
commitdiff
|
tree
2008-11-12
Alb
e
rt
Cardona
Implemen
t
ed
bet
t
er LayerS
e
t virt
u
aliz
a
tion
:
try ru
n
nin
g
.
.
.
commit
|
commitdiff
|
tree
2008-11-12
Albe
r
t Cardona
Disabled mpicgb
p
ack
a
ge dependency until prope
r
ly impleme
n
ted
.
commit
|
commitdiff
|
tree
2008-11-12
Albert Card
o
na
I
mplement
e
d exporti
n
g of A
r
eaLi
s
ts as labe
l
s stac
k
.
commit
|
commitdiff
|
tree
2008-11-12
Albert Cardona
Fix
e
s and more
f
ixes for Polyli
n
e
.
commit
|
commitdiff
|
tree
2008-11-12
Albert Cardona
Ad
d
ed
cali
b
r
ati
o
n fo
r
e
x
ported f
l
at ima
g
es or s
t
acks
.
commit
|
commitdiff
|
tree
2008-11-12
Albert Cardona
Fixed small nu
m
ber of bug
s
.
commit
|
commitdiff
|
tree
2008-11-12
Albert
C
a
rdona
Now ad
d
in
g
point to
be
g
inning or
end
c
onsiders calib
r
ation
.
.
.
commit
|
commitdiff
|
tree
2008-11-12
Albert Ca
r
dona
New clas
s
Polylin
e
.
commit
|
commitdiff
|
tree
2008-11-11
Albert C
a
rdona
Started new Polyli
n
e Display
a
ble d
a
ta
t
ype
.
commit
|
commitdiff
|
tree
2008-11-11
Albert Ca
r
dona
Fixed transparency for
P
ipe
.
commit
|
commitdiff
|
tree
2008-11-10
Albert Cardo
n
a
Added area averaging mipmap generation
met
h
od, which
.
.
.
commit
|
commitdiff
|
tree
2008-11-10
Albe
r
t
Cardona
A
dd
e
d explicit mes
s
age
whe
n
ignoring ob
j
ects in ProjectTree
.
.
.
commit
|
commitdiff
|
tree
2008-11-10
Albe
r
t
C
ardona
M
a
d
e
makeTitle public, so
it
c
a
n be used to retrieve
.
.
.
commit
|
commitdiff
|
tree
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