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Merge remote-tracking branch 'origin/master'
2012-03-27
Steph
a
n
S
aalfeld
Fi
x
ed Downsampler:
r
ange check in byte co
n
version was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Merge
b
ranch 'integ
r
al' of ssh:
/
/repo
.
o
r
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saa
l
feld
added mis
s
in
g
package t
o
Fakefile
commit
|
commitdiff
|
tree
2012-03-08
Stephan
S
aalfeld
Mer
g
e bra
n
ch 'mas
t
e
r
'
of ss
h
://r
e
po
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
S
t
ephan Saalfeld
fix local scale
e
stimate
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added g
e
tLocalScale(x,y) metho
d
to P
a
tch
commit
|
commitdiff
|
tree
2012-03-07
Stepha
n
Saalfeld
pat
c
h does
not p
r
opagate NonInvertibleMo
d
elException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
Merge branch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added metho
d
s t
o
fetch th
e
c
losest triangle of
a
trans
f
or
m
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
S
t
ephan Saalfeld
in the middle of
.
.
.
amend with
final commit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalf
e
ld
demonstrate byte c
o
nversion in an
extra loop to
b
e
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Merge branch
'integral'
o
f
ssh
:
//r
e
po
.
or
.
cz/srv/g
i
t
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Downsampler f
i
nished
.
I have te
s
ted sev
e
ral var
i
a
nts
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan
Saalfeld
experiman
t
al
c
ommit:
commit
|
commitdiff
|
tree
2012-02-23
Step
h
an Saalfeld
Merge branch 'in
t
egral' of
s
sh://r
e
po
.
or
.
cz/s
r
v/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Steph
a
n Saalfe
l
d
Downsamp
l
er
wit
h
alpha-c
h
a
nnels render
i
ng into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
St
e
phan Saalfeld
Mer
g
e branch 'master
'
of ssh://r
e
po
.
or
.
cz/s
r
v/g
i
t/trakem2
commit
|
commitdiff
|
tree
2012-02-22
Stephan
S
aalfeld
set
i
n
t
erpolat
i
on mode
to actually interpo
l
a
t
e masks
commit
|
commitdiff
|
tree
2012-01-06
Stephan Saalfe
l
d
Fixed bug 392, the propert
y
n_mipmaps_
t
hreads must
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
ElasticMo
n
tage: do n
o
t
visu
a
lize
commit
|
commitdiff
|
tree
2011-11-07
Stephan
S
aalfeld
Merge br
a
n
c
h 'master' of ssh://repo
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saa
l
feld
Alig
n
Task: really skip layers ann
o
t
ation-with linked
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Step
h
a
n
Saalfeld
El
a
s
ti
c
Mont
a
ge: r
e
spect fixed Patch
e
s (fro
m
s
e
lection
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Step
h
an
S
aalfeld
renamed shading local parameter
commit
|
commitdiff
|
tree
2011-11-07
Stephan
Saal
f
eld
Att
e
m
p
t to fix
bug 380
.
Please ch
e
c
k
i
f
t
h
e behavior
commit
|
commitdiff
|
tree
2011-11-07
S
tephan
S
aalfeld
adde
d
com
m
en
t
s and fixe
d
typo
commit
|
commitdiff
|
tree
2011-10-22
Stephan
S
aalfeld
Elas
t
ic
A
lignment/Montage:
commit
|
commitdiff
|
tree
2011-10-19
St
e
ph
a
n Saalfeld
Me
r
ge
branch 'mast
e
r' of ssh://repo
.
or
.
cz/s
r
v/g
i
t/trakem2
commit
|
commitdiff
|
tree
2011-10-12
Ste
p
han Sa
a
lfeld
Merge branch 'mas
t
e
r
' of ssh://re
p
o
.
or
.
cz
/
sr
v
/git/tra
k
em2
commit
|
commitdiff
|
tree
2011-10-10
S
t
e
p
han
S
aalfeld
Merge bra
n
ch 'master
'
of
s
s
h:/
/
rep
o
.
or
.
cz
/
s
rv
/
git/trake
m
2
commit
|
commitdiff
|
tree
2011-10-10
Step
h
an Saa
l
feld
Align uses Util
s
.
l
o
g instead o
f
IJ
.
log
commit
|
commitdiff
|
tree
2011-10-10
S
tephan Saa
l
feld
Distort
i
on correct
i
o
n
uses Utils
.
log instead of IJ
.
log
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfeld
log time an
d
d
ate
pe
a
r each log print
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfel
d
adde
d
expe
r
imenta
l
16bit unsign
e
d tiles
expor
t
er
commit
|
commitdiff
|
tree
2011-10-10
Stepha
n
Saalfeld
Tr
a
ns
f
or
m
MeshMappingW
i
thMasks got me
t
hods
and r
e
n
d
er
i
ng
commit
|
commitdiff
|
tree
2011-10-01
Ste
p
h
a
n
S
aalfeld
make IJ
.
log to U
t
ils
.
log
in Elasti
c
LayerA
l
ig
n
m
ent
commit
|
commitdiff
|
tree
2011-09-29
S
teph
a
n Saalfeld
added bl
o
ck
radius
a
s
parameter to
commit
|
commitdiff
|
tree
2011-09-28
Stephan Saalfeld
ElasticLay
e
rA
l
ign
m
ent visualiz
a
tion b
a
c
k to
false
commit
|
commitdiff
|
tree
2011-09-27
Stephan Sa
a
lfeld
sp
r
i
ngmesh damp
back to
normal, not muc
h
commit
|
commitdiff
|
tree
2011-09-27
S
t
ephan
Saal
f
eld
Mer
g
e
branch 'm
a
ster' of ssh://repo
.
or
.
c
z/srv/git/tra
k
e
m
2
commit
|
commitdiff
|
tree
2011-09-27
Step
h
a
n
Saalfeld
a
d
ded local smoo
t
hne
s
s filte
r
to
e
lastic
l
a
yer
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saalfeld
added a m
e
thod t
o
create an Abstract
M
odel u
s
ing a
n
commit
|
commitdiff
|
tree
2011-09-25
Stephan Saalfe
l
d
fixed
wrong namings from last
c
ommit
commit
|
commitdiff
|
tree
2011-09-24
Step
h
an Sa
a
l
f
e
l
d
a
d
ded trans
f
er modes for Coo
r
dinateTr
a
nsforms,
commit
|
commitdiff
|
tree
2011-09-24
St
e
phan Saalfeld
a
d
de
d
a
metho
d
to pre-append a CoordinateTransform
commit
|
commitdiff
|
tree
2011-09-15
Stephan Sa
a
lfeld
remove clutter
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfel
d
Me
r
ge branch
'
mas
t
er' int
o
elastic-
a
l
i
gn
commit
|
commitdiff
|
tree
2011-09-15
St
e
phan S
a
a
l
feld
small decl
u
tter Non
L
inearTransform
M
ode
commit
|
commitdiff
|
tree
2011-09-14
Stephan S
a
a
l
fe
l
d
Merge branch 'e
l
a
stic-align'
of
ssh://re
p
o
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Step
h
a
n
S
aalfeld
T
r
ansfor
m
Mes
h
M
a
pp
i
n
g
WithMas
k
s multi-threaded
commit
|
commitdiff
|
tree
2011-09-14
S
t
e
phan S
a
a
l
feld
make mesh r
e
so
l
ution a Pat
c
h parameter
i
nstea
d
of
3
2
commit
|
commitdiff
|
tree
2011-09-12
Stephan Saa
l
feld
M
erg
e
branch '
m
aster' in
t
o elastic-
a
l
i
g
n
commit
|
commitdiff
|
tree
2011-09-12
St
e
p
han Saalfeld
Merge bran
c
h 'elastic-align'
o
f ssh://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2011-09-12
S
tephan S
a
alfel
d
sep
a
r
ate SIFT parameter dialog
commit
|
commitdiff
|
tree
2011-09-06
St
e
phan Saalfel
d
fix
e
d Ela
s
tic Montage using the
w
rong linear mo
d
e
l
.
.
.
commit
|
commitdiff
|
tree
2011-09-01
Stephan Saalfeld
f
ixed
Do
w
nsampler
doi
n
g one pixel less th
a
n it should
commit
|
commitdiff
|
tree
2011-08-30
Stephan Saalfeld
ElasticMontage: switch off vi
s
ualization agai
n
commit
|
commitdiff
|
tree
2011-08-30
S
tephan
S
aalf
e
ld
fix Gaussi
a
n m
i
pma
p
g
e
neration
i
n FSLoader:
commit
|
commitdiff
|
tree
2011-08-30
Ste
p
h
an Saalfeld
Flo
a
tP
r
ocesssor
T
2 got a method for d
o
wns
a
m
plin
g
by
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Stephan Saalfeld
updat
e
d serial uid
commit
|
commitdiff
|
tree
2011-08-29
Stephan Saalfeld
a
d
ded an 1/2 downsampler fo
r
all ImageProces
s
o
r types
.
.
.
commit
|
commitdiff
|
tree
2011-08-29
Stephan
S
aalfeld
Elas
t
icMonta
g
e:
commit
|
commitdiff
|
tree
2011-08-29
Ste
p
h
an Saa
l
feld
fix copy/paste bug in
E
lasticMontage that
made ima
g
e
2
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
St
e
phan Saalfe
l
d
El
a
sticLayerAlignment: app
l
y
a copy
of the
l
ayer
transform
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Stephan Saalfeld
Ove
r
r
i
de
app
l
yInPl
a
ce method i
n
MLST and MLST2, synchronizin
.
.
.
commit
|
commitdiff
|
tree
2011-08-23
Stephan Saal
f
eld
E
l
asti
c
L
a
yer
A
lig
n
ment: apply trans
f
o
rm
a
t
i
o
ns using
.
.
.
commit
|
commitdiff
|
tree
2011-08-22
S
t
eph
a
n Saalfe
l
d
F
i
xed inaccurate ren
d
er
i
n
g
of fla
t
images with quality
.
.
.
commit
|
commitdiff
|
tree
2011-08-22
St
e
phan Saalfe
l
d
Elastic
M
on
t
age: do
n
o
t vis
u
alize
(can be harmful when
.
.
.
commit
|
commitdiff
|
tree
2011-08-20
S
t
ephan Saalfeld
Patched patch
p
ai
n
ting su
c
h th
a
t it conforms
to
t
h
e
.
.
.
Signed-off-by:
Stephan Saalfeld
<saalfeld@mpi-cbg.de>
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfe
l
d
u
se MovingLeastSquaresTransfor
m
2 in ElasticLayerAlig
n
ment
commit
|
commitdiff
|
tree
2011-08-10
Stephan Sa
a
lfel
d
use
M
ovingLeastSqua
r
e
s
T
ransform
2
in E
l
astic
M
ontage
commit
|
commitdiff
|
tree
2011-08-10
S
tephan Sa
a
lfeld
use Moving
L
eastSqu
a
resTransform2 f
o
r
warping in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
S
tephan Saal
f
eld
u
se
MovingLeastSqu
a
res
T
ra
n
sform2 in NonLinearTra
n
sfo
r
m
Mode
commit
|
commitdiff
|
tree
2011-08-10
S
tephan Saalf
e
l
d
A
d
de
d
MovingLeastSquaresTransform
2
e
xtending
commit
|
commitdiff
|
tree
2011-08-07
S
t
ephan
Saa
l
fe
l
d
E
l
a
sticLayerAlignment: When trans
f
e
r
r
ing layer tra
n
sforma
t
i
o
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan Saal
f
eld
flush cache between l
a
yer exports (th
e
cache is
o
t
herwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
S
t
ephan Saalfeld
free memory b
e
fore running m
e
mory
d
emanding tasks
in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan S
a
alfeld
fix
e
d bug in line
a
rL
a
y
e
rAlig
n
ment, cal
c
ulat
e
and apply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
S
tep
h
an Saa
l
feld
flush
i
m
age c
a
che
memo
r
y be
f
ore
d
o
in
g
a montage
commit
|
commitdiff
|
tree
2011-06-29
Stephan
Saalfeld
El
a
sticMonta
g
e:
commit
|
commitdiff
|
tree
2011-06-29
S
tephan Saalfeld
M
erge branch
'master' into elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
Merge br
a
nch 'mast
e
r' into e
l
astic-ali
g
n
commit
|
commitdiff
|
tree
2011-06-28
S
tep
h
an Saa
l
f
e
l
d
Added
`se
e
m
s
-
t
o-w
o
r
k
' elastic montag
i
ng
.
Mis
s
ing parts
a
re
commit
|
commitdiff
|
tree
2011-06-28
Steph
a
n Saalfeld
* made Patch
.
PatchIm
a
ge a static
class (
i
t has
n
o references
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
St
e
pha
n
Saal
f
eld
added
Pair t
o
A
bstract
commit
|
commitdiff
|
tree
2011-06-23
St
e
phan Saalfeld
Align
.
j
ava
:
m
o
ved twice implemented Model fitting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Step
h
an Saalfeld
E
lasticAlign uses the loca
l
s
i
f
tParam for identifying
commit
|
commitdiff
|
tree
2011-06-23
Stephan S
a
alfe
l
d
TransformMeshMapp
i
ngWith
M
a
s
k round
s
triangel bo
u
nding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan
S
aalfel
d
attempt to
g
et s
h
ared function for layer
ali
g
nment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Ste
p
han Saalfeld
titled m
o
ntage dialog `M
o
ntage
'
consistently with the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Steph
a
n Saalf
e
ld
Fixed
T
hread interruption in Align
.
connec
t
T
i
l
e
Pairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan S
a
a
lf
e
ld
`
M
o
ntage all images
in this layer'
:
commit
|
commitdiff
|
tree
2011-06-17
Stephan
Saalfe
l
d
ElasticAlign fi
x
e
s
:
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfeld
Me
r
ge branc
h
'master' into elastic-align
commit
|
commitdiff
|
tree
2011-06-16
Ste
p
h
a
n Saalfeld
co
m
ment test rp
i
nt
commit
|
commitdiff
|
tree
2011-05-27
S
t
e
phan
S
aalfeld
s
tarted with
E
lastic Alignment,
layer align
m
ent a
l
re
a
dy
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan Saalfeld
Merg
e
b
r
a
nch 'master
'
into m
p
icbg-model-interface
commit
|
commitdiff
|
tree
2010-11-20
S
tephan Saalfel
d
track
i
ng m
p
icbg mode
l
-inte
r
face
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saalfeld
mpicbg
.
trakem2
.
tr
a
nsfo
r
m
.
TransformMesh
e
xtra
p
olates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Fixed
bug 202
commit
|
commitdiff
|
tree
next