repo.or.cz
/
trakem2.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
use MovingLeastSquaresTransform2 in ElasticLayerAlignment
2011-08-10
St
e
phan
S
aa
l
feld
u
s
e MovingLeastSquares
T
ran
s
form2 in ElasticLa
y
e
r
A
lignment
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use M
o
vingLeastSquaresTransform2 in ElasticM
o
ntage
commit
|
commitdiff
|
tree
2011-08-10
Stephan
Saa
l
f
e
ld
use Movi
n
gLeastSqua
r
esTransf
o
r
m
2 for warpin
g
in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
St
e
p
h
an
Saalfe
l
d
use
MovingLeas
t
SquaresTransfo
r
m
2 in NonLinea
r
TransformM
o
de
commit
|
commitdiff
|
tree
2011-08-10
Steph
a
n Saal
f
eld
Ad
d
ed MovingL
e
astSquaresT
r
ansform2 exten
d
ing
commit
|
commitdiff
|
tree
2011-08-07
Stephan Sa
a
lfeld
ElasticLaye
r
Ali
g
nment: When transferring layer transformatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan Sa
a
l
f
e
ld
flush cache betwe
e
n l
a
yer ex
p
o
rts (th
e
cache is otherw
i
se
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saa
l
f
e
ld
free m
e
m
o
ry be
f
ore runni
n
g memory demanding tasks in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Ste
p
ha
n
Saalfeld
fixed bu
g
in linearLayerAlignment, calculate and app
l
y
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
St
e
phan
S
a
a
l
fe
l
d
flush im
a
ge cache memory
befor
e
doi
n
g a montage
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfeld
E
l
ast
i
c
M
ontage:
commit
|
commitdiff
|
tree
2011-06-29
Stephan
Saalfeld
Merg
e
branch 'ma
s
t
e
r' into elastic-
a
lig
n
commit
|
commitdiff
|
tree
2011-06-28
Stepha
n
Saalfeld
Merge branch 'ma
s
t
er'
into elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stepha
n
Saalfeld
Add
e
d `
s
eems-to-w
o
rk' elastic montag
i
ng
.
Missing
parts a
r
e
commit
|
commitdiff
|
tree
2011-06-28
S
tephan Saalfe
l
d
* m
a
de Patch
.
PatchImage a static class
(it has no
r
efe
r
ences
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan
S
aalfeld
adde
d
Pair
to Abs
t
ra
c
t
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfeld
Align
.
j
a
va: moved twice imple
m
ented Mo
d
el f
i
t
t
ing and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saa
l
feld
E
lasticA
l
ign us
e
s the
local siftParam for iden
t
i
f
ying
commit
|
commitdiff
|
tree
2011-06-23
Stephan Sa
a
lfeld
Transf
o
rmMeshMappingWithMa
s
k rounds trian
g
el b
o
un
d
ing
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stepha
n
Saalfel
d
attempt
t
o get share
d
f
u
n
ction f
o
r layer alig
n
ment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Sa
a
lfel
d
titled monta
g
e dialo
g
`
M
ontage' consistently wi
t
h the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
t
eph
a
n Saalf
e
l
d
F
i
xed Thread
i
nterruption
i
n Align
.
co
n
nectTi
l
eP
a
irs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan
S
a
a
lfeld
`Monta
g
e all images
in
this la
y
er':
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalf
e
ld
E
l
asticAl
i
gn fixes:
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfeld
Merg
e
branch 'master'
i
nto elastic-align
commit
|
commitdiff
|
tree
2011-06-16
Stephan Sa
a
lfeld
co
m
ment t
e
st rpint
commit
|
commitdiff
|
tree
2011-05-27
Stephan
Saalfe
l
d
star
t
ed with Elas
t
ic
A
lig
n
ment,
layer alignm
e
nt already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
S
t
ephan Saa
l
feld
Merge br
a
n
ch 'master' in
t
o mpicbg-model-interface
commit
|
commitdiff
|
tree
2010-11-20
Stephan Saalfeld
tracking mpic
b
g mo
d
el-
i
nterfac
e
commit
|
commitdiff
|
tree
2010-08-18
S
t
epha
n
Saalfe
l
d
m
p
icbg
.
trakem2
.
transform
.
Tr
a
nsform
M
esh ex
t
r
a
pol
a
tes
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Fixed
b
ug 202
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
*
a
dd minimal
absolute n
u
mber of inliers as a parame
t
er
commit
|
commitdiff
|
tree
2010-08-16
Stephan
S
aal
f
eld
Mer
g
e bra
n
ch '
m
as
t
er' into re
j
ectconst
a
nt
b
ack
g
round
commit
|
commitdiff
|
tree
2010-08-16
S
tephan Saalfe
l
d
Merge branch 'master' o
f
ssh://repo
.
or
.
cz/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2010-08-07
Stephan
S
aalfeld
Merge
bran
c
h
'
rejectconstantbac
k
gr
o
und' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Steph
a
n
Saalfeld
finding c
o
nnected
tiles moved into base class
commit
|
commitdiff
|
tree
2010-08-07
Steph
a
n S
a
a
lfe
l
d
use o
u
tl
i
er filter
i
n
optimizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfel
d
finding conne
c
ted tiles moved
i
nto base cla
s
s
commit
|
commitdiff
|
tree
2010-08-06
Stephan Saalf
e
l
d
M
erge branch 're
j
ectconstantback
g
roun
d
' o
f
ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
S
t
e
p
han Saalfeld
Fix wrong parameter choice in
Al
i
gnT
a
s
k
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
Merge
b
ranch
'master'
i
nto rejectcons
t
a
n
tbackground
commit
|
commitdiff
|
tree
2010-08-05
Steph
a
n Saalfe
l
d
extended ve
r
bosity of the
t
ile matching
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
A
d
ded a filter to reject constant back
g
round patterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
S
tep
h
an Saalfeld
Merge bra
n
ch 'master' of ssh://re
p
o
.
or
.
cz/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2010-03-19
Stephan
S
a
alfeld
Recovered the
mos
t
i
m
porta
t
n of
I
g
nacio's
p
r
evious
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Step
h
an Saalfeld
Merge branch 'master' i
n
to lens-model
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfel
d
Cr
e
a
t
ed Pol
y
nomi
a
lModel2D, a wrapper for Verena Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
S
t
ephan Saalf
e
ld
Ad
d
ed the
m
a
ximal acc
e
pted fac
t
or to mean P
o
intMatch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Sa
a
l
f
eld
Re
m
ove
matche
s
with larg
e
displacement from the conf
i
gurat
i
on
commit
|
commitdiff
|
tree
2010-02-23
Stephan Saalf
e
ld
f
ixed c
a
librat
i
on
o
f scale
d
sna
p
s
hots when expor
t
ing
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan S
a
alfeld
fixed calibration of scaled sna
p
shot
s
commit
|
commitdiff
|
tree
2010-02-19
Steph
a
n Saal
f
eld
Alig
n
Ta
s
k
: when deformi
n
g, tiles ARE already in place
commit
|
commitdiff
|
tree
2010-02-19
Stephan
S
a
alfeld
Alig
n
Task: Fixed missuse of
a
static variabl
e
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saa
l
feld
Remov
e
the never use
d
shake method
f
r
om abst
r
act
Model
.
commit
|
commitdiff
|
tree
2010-02-10
S
tephan Saalf
e
ld
F
ixed a b
u
g
t
hat made the original i
m
a
g
e appear
behind
commit
|
commitdiff
|
tree
2010-02-09
Stephan S
a
alfeld
Synchro
n
iz
e
d screenPatchRanges
commit
|
commitdiff
|
tree
2010-02-09
S
t
epha
n
Saalf
e
ld
m
inor c
l
e
a
n
u
p
i
n lensc
o
rrection
commit
|
commitdiff
|
tree
2010-02-09
Stephan
S
aalfel
d
Added Trans
f
ormMeshMap
p
in
g
W
i
thMasks for more
eff
i
cie
n
t
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Steph
a
n Saalfeld
NonLinea
r
Tran
s
formMode can propagate the transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
S
t
epha
n
Saalfe
l
d
F
o
r now
,
don't
s
cale maxE
p
silon
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
Ali
g
n
M
u
lti-Lay
e
r
-
M
o
sa
i
c: Use
up to 2
x
max
O
ct
a
veSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
St
e
p
h
an Saalfeld
Fin
i
shed
t
he deform operation to consider a
l
l gra
p
h
s
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfe
l
d
Fixed
Float
.
M
I
N_VA
L
U
E
to
Float
.
M
A
X_VALUE wher
e
it
r
emained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stepha
n
Sa
a
lfel
d
alignMultiLay
e
rMo
s
aic fin
a
l
l
y uses
graph
-
based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
han Saalfeld
changed default
v
al
u
e
of SIFT
.
ma
x
OctaveSize = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saal
f
eld
fixed pairOverlappingTiles
(
List, List
,
List[] )
commit
|
commitdiff
|
tree
2010-01-28
Stepha
n
Saalf
e
ld
ad
d
e
d
cor
r
e
s
p
ondence we
i
ght as
a
p
aram
e
ter
to
Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
S
t
epha
n
S
a
alf
e
ld
M
erg
e
branch 'ma
s
ter' in
t
o bunwarpj
commit
|
commitdiff
|
tree
2009-11-04
S
tephan Saa
l
feld
Merge branch 'master' into
bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfe
l
d
Fixed CompositeModes
t
o work in t
h
e following configurat
i
ons
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
alfeld
Rev
e
r
t "Work a
r
ound an
n
oying bug in Graphics2D,
i
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalf
e
l
d
Fixed CompositeModes
to work in the f
o
l
l
o
w
ing co
n
fig
u
r
a
t
io
n
s
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfeld
Sep
a
r
ating AlignLayersTask from
A
l
i
gnT
a
s
k
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Reve
r
t
"Work around
a
nnoying bug in Graphi
c
s
2
D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan Saalf
e
ld
Me
r
ge branch '
m
aste
r
'
in
t
o c
o
mposite-modes
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Ad
d
ARGBC
o
mpo
s
ite can handle ima
g
e with no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Ste
p
h
an Saalfeld
Added
a
comme
n
t in
A
l
ign
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfeld
refactore
d
a misnam
e
d
m
ethod and stat
i
f
ie
d
some parameters in
commit
|
commitdiff
|
tree
2009-10-14
S
tephan Saa
l
fe
l
d
sync
h
ronized p
o
tentially
concurrency
un
s
afe match inser
t
i
on
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saalfeld
Fixed
t
he
g
eometry
i
ssues and a
d
d
ed
s
u
pport for all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Step
h
a
n
S
aalfel
d
Cat
c
hing
a
nd hand
l
ing OutOfMemoryErrors in Fe
a
t
u
reExtraction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
St
e
phan Saalfeld
Cosmeti
c
s in AlignTask and SimilarityMode
l
2
D
commit
|
commitdiff
|
tree
2009-10-08
Stephan
Saalfeld
l
enscorrectio
n
sto
p
s
n
ow l
a
t
e
r but latest after the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saa
l
feld
Merge branch '
m
aster' of ssh
:
/
/
r
e
p
o
.
o
r
.
cz/srv/git/trake
m
2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Sa
a
lfeld
Me
r
g
e b
r
anch 'ma
s
t
e
r' of ss
h
://
r
e
po
.
o
r
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saalfe
l
d
Fix 0
.
5gr
e
y
b
a
ckground for ByteProce
s
sor
s
in
commit
|
commitdiff
|
tree
2009-09-24
S
tephan Saalfeld
Merge br
a
nch 'maste
r
' of ss
h
://
r
epo
.
o
r
.
cz/srv/git/trake
m
2
commit
|
commitdiff
|
tree
2009-09-23
Stepha
n
S
a
a
lfe
l
d
Saving a lot of RAM in
v
isuali
z
ing the lens distortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Sa
a
lfeld
M
erg
e
bran
c
h 'sta
c
k' into align
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan Sa
a
lfeld
H
opef
u
lly f
i
xed the scaling in St
a
ck
commit
|
commitdiff
|
tree
2009-09-17
Stepha
n
S
aalf
e
ld
Merg
e
br
a
nch 'sta
c
k' into
a
l
ign
commit
|
commitdiff
|
tree
2009-09-17
Stephan S
a
alfeld
Merge
branch
'stack' of ssh:/
/
rep
o
.
or
.
cz/srv/gi
t
/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan
Saalfeld
Merge bra
n
c
h
'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stepha
n
Saalfeld
separated
t
he actual alignLayersLinearly job from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
epha
n
Saalfeld
Loader
u
ses
d
b_lock
commit
|
commitdiff
|
tree
2009-09-16
Ste
p
han Saalfeld
Me
r
ge bran
c
h 'al
i
gn' of ssh://repo
.
o
r
.
cz/srv/git/
t
r
a
kem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Steph
a
n Saalfeld
Fixed
a
b
u
g that
p
r
event
e
d the multi-layer mosaickin
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalfeld
Merge bra
n
ch 'stack
'
of ssh://re
p
o
.
or
.
c
z/s
r
v/gi
t
/trake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Ste
p
ha
n
Saalf
e
l
d
a very intermedia
t
e commit that inter
r
upts me at
s
tarting the
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saalfe
l
d
decaching w
a
s
not successful---truing
anoth
e
r
o
n
e
.
.
.
commit
|
commitdiff
|
tree
next