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use MovingLeastSquaresTransform2 in ElasticLayerAlignment
2011-08-10
Ste
p
han Saal
f
e
l
d
us
e
M
o
vingLeas
t
SquaresTransform2 in
E
l
astic
L
ayerAlignment
commit
|
commitdiff
|
tree
2011-08-10
S
t
e
phan
Saalfeld
use
MovingLe
a
stSquare
s
Tran
s
form2 in ElasticMo
n
tage
commit
|
commitdiff
|
tree
2011-08-10
St
e
phan Saalfeld
use MovingLeastSquaresTransform2 for warping in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
Stepha
n
S
a
alfeld
use Movin
g
Least
S
q
uares
T
r
a
n
sfor
m
2
i
n No
n
Li
n
ea
r
Tran
s
formMode
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
Ad
d
ed Movin
g
LeastSquares
T
r
a
nsf
o
r
m
2
extendi
n
g
commit
|
commitdiff
|
tree
2011-08-07
Stephan Saalfeld
ElasticL
a
ye
r
Alignmen
t
:
When trans
f
e
r
ring layer
t
r
ansform
a
ti
o
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Ste
p
h
an
S
aalfeld
flush
c
ache between layer expor
t
s (the cache
is
o
therwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saa
l
f
eld
free mem
o
r
y
before
r
u
nning memory demandin
g
tasks
in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saal
f
e
ld
fixed bu
g
in
l
inearLayerAlignm
e
nt, calcul
a
t
e
and
a
pply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Steph
a
n Saalfeld
f
lush i
m
age cache memory before
doing a mont
a
g
e
commit
|
commitdiff
|
tree
2011-06-29
Stepha
n
S
a
a
l
feld
E
l
asticMon
t
age
:
commit
|
commitdiff
|
tree
2011-06-29
Step
h
an Saal
f
e
l
d
Merg
e
branch 'm
a
st
e
r' in
t
o
e
la
s
tic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan
S
a
a
lfeld
Merge branch 'mast
e
r' into elas
t
ic-a
l
ign
commit
|
commitdiff
|
tree
2011-06-28
Stepha
n
Saal
f
eld
Added `seems-t
o
-wor
k
' elas
t
ic montaging
.
Mi
s
sin
g
parts
a
r
e
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
* mad
e
Patch
.
Pa
t
chI
m
a
g
e a static
c
lass
(it has no refer
e
n
ces
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Ste
p
h
a
n S
a
a
l
feld
adde
d
Pair to Abstract
commit
|
commitdiff
|
tree
2011-06-23
S
t
e
p
han Saalf
e
ld
A
lign
.
java: moved
t
w
i
ce implemented Model fitting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfel
d
El
a
sticAlign
uses
the local siftPara
m
for
identi
f
ying
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalf
e
ld
T
r
an
s
form
M
e
shMappingW
i
thM
a
sk rounds
t
riangel bo
u
nding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Step
h
a
n
S
a
a
lfeld
atte
m
pt to get share
d
function for
layer a
l
i
gnmen
t
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Steph
a
n
Saal
f
eld
titled mont
a
g
e
d
i
a
l
og `Monta
g
e
'
consi
s
tently
with
the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Steph
a
n Saalfeld
Fixed Thre
a
d
interruptio
n
in Align
.
con
n
ectTilePa
i
r
s
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Steph
a
n Saalfel
d
`Montage all images in this layer
'
:
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saal
f
eld
Ela
s
ticAlign fixes:
commit
|
commitdiff
|
tree
2011-06-16
Steph
a
n Sa
a
lfeld
Merge b
r
anch 'mast
e
r' into
e
las
t
ic-align
commit
|
commitdiff
|
tree
2011-06-16
Stephan
Sa
a
lfeld
c
omment test rpint
commit
|
commitdiff
|
tree
2011-05-27
St
e
phan Saalfel
d
started
with Elastic Ali
g
nment, layer align
m
ent alr
e
ady
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan Saalfeld
Merg
e
branch '
m
as
t
er' into mpicb
g
-model-interface
commit
|
commitdiff
|
tree
2010-11-20
Stephan Saalf
e
ld
t
rackin
g
m
picbg m
o
de
l
-inte
r
fa
c
e
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saalfeld
mpicb
g
.
trakem
2
.
transform
.
Transfor
m
Mesh extrapolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Ste
p
h
a
n Sa
a
lfel
d
F
ixe
d
bug 202
commit
|
commitdiff
|
tree
2010-08-16
Ste
p
han Saalfeld
*
add mini
m
a
l
absolute num
b
e
r
of inlie
r
s
as a paramet
e
r
commit
|
commitdiff
|
tree
2010-08-16
S
t
e
p
han Saalf
e
ld
Merg
e
branch 'mast
e
r' into r
e
jectconstant
b
ackground
commit
|
commitdiff
|
tree
2010-08-16
S
t
e
p
h
a
n Saalfeld
Mer
g
e
bra
n
c
h 'master' of
s
sh://
r
epo
.
or
.
cz
/
srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
Merge
branc
h
'rejectconstan
t
backgrou
n
d' of ssh://rep
o
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
St
e
phan Saalfeld
finding connecte
d
t
iles moved into base class
commit
|
commitdiff
|
tree
2010-08-07
Stepha
n
Saalfeld
use outl
i
er fi
l
t
e
r in
o
ptimiz
e
r
commit
|
commitdiff
|
tree
2010-08-07
St
e
phan Saalfeld
f
i
n
d
ing c
o
nnected tiles
moved into bas
e
class
commit
|
commitdiff
|
tree
2010-08-06
Steph
a
n
Saalfeld
M
e
rge branch 'rejectconstantbackgroun
d
' of s
s
h://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stephan Saalf
e
ld
Fix wrong paramete
r
choice in A
l
ignTask
commit
|
commitdiff
|
tree
2010-08-05
Stephan Sa
a
lf
e
ld
M
erge
b
ranch 'master'
i
nto reject
c
onstantba
c
kgr
o
und
commit
|
commitdiff
|
tree
2010-08-05
Stephan
S
a
alfeld
exte
n
d
e
d verbosity of the tile ma
t
ching
commit
|
commitdiff
|
tree
2010-08-05
Stephan
S
a
a
lfeld
A
dded a
f
ilter to
r
e
ject constan
t
backgrou
n
d pa
t
te
r
n
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Steph
a
n
Saalfeld
Merge branch 'master' of ss
h
://repo
.
or
.
c
z/srv/git/trakem2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Recovered the most importatn of
I
gnacio
'
s pr
e
viou
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan S
a
a
lfeld
Merge branch 'ma
s
ter' into lens-
m
odel
commit
|
commitdiff
|
tree
2010-03-19
Stephan
S
aalfeld
Created Polyn
o
mia
l
Model
2
D, a wrapper for Verena Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
S
t
ephan Saalfeld
Add
e
d th
e
maxi
m
a
l
a
cc
e
p
ted
factor to mean PointMatch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan
Saalfeld
Remove matches wit
h
large d
i
splacem
e
nt
f
rom th
e
configuration
commit
|
commitdiff
|
tree
2010-02-23
St
e
phan Saalfeld
f
ix
e
d calibration of scaled snapshots when exp
o
rting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan
S
aalfeld
fixed calibration of sca
l
ed s
n
apshots
commit
|
commitdiff
|
tree
2010-02-19
Ste
p
h
an Saalfeld
A
l
ignTask
:
w
hen deforming, t
i
les ARE alread
y
in place
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saal
f
eld
A
li
g
nTas
k
: Fixed missuse
of a static vari
a
ble
.
commit
|
commitdiff
|
tree
2010-02-19
Ste
p
han Saalfe
l
d
Remove the neve
r
us
e
d shake metho
d
from a
b
st
r
act M
o
d
e
l
.
commit
|
commitdiff
|
tree
2010-02-10
S
tephan
Saalfeld
F
i
x
ed a bug that made
t
he original i
m
a
ge appear beh
i
n
d
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
Synchron
i
z
e
d screenPatchRange
s
commit
|
commitdiff
|
tree
2010-02-09
S
tephan Saalfeld
m
i
nor cleanup in le
n
scorre
c
t
i
on
commit
|
commitdiff
|
tree
2010-02-09
Stephan
S
aalfeld
Added Trans
f
or
m
MeshMappi
n
gWithM
a
sks for mor
e
efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
NonLinearTransformMode can
propagate the transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Sa
a
lfeld
F
or now, don
'
t scale ma
x
Epsi
l
o
n
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
Ali
g
n M
u
lti-Laye
r
-Mo
s
aic: Us
e
up to 2x maxOctav
e
Si
z
e
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan
Sa
a
lfeld
Finish
e
d
t
he deform
o
peration to consider all graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
St
e
ph
a
n Saalfeld
Fixed Float
.
MIN
_
VALUE
t
o Float
.
MAX_VA
L
UE where
it
remain
e
d
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan
S
aalfeld
alignMultiLay
e
rMosai
c
fin
a
l
ly uses grap
h
-ba
s
ed p
r
e
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ep
h
a
n Saalfeld
changed defaul
t
value of SIFT
.
m
axOct
a
veSize = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfel
d
fixed pairOverlapping
T
i
le
s
( List, List, List[] )
commit
|
commitdiff
|
tree
2010-01-28
Stephan Saal
f
eld
added correspond
e
n
c
e weight as a paramet
e
r
to Al
i
g
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
Step
h
an Saalf
e
ld
Merge
b
ranch
'
master' int
o
bunwarpj
commit
|
commitdiff
|
tree
2009-11-04
Stephan Saal
f
eld
Merge
br
a
n
c
h 'master
'
i
n
to bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Fixed CompositeModes to wor
k
in
the fo
l
lowing co
n
figur
a
tion
s
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfe
l
d
Re
v
ert "Work a
r
o
u
nd annoying bu
g
in Graphics2
D
, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan
Saal
f
e
ld
Fi
x
ed Composite
M
o
d
es to work in the following
configurations
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalfeld
Separating
A
lignLayer
s
Task fro
m
Al
i
gnTask
.
commit
|
commitdiff
|
tree
2009-11-03
Ste
p
han
Saalfel
d
Rever
t
"Work
around annoying bug i
n
Grap
h
ics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Sa
a
l
fel
d
Merge branch 'm
a
s
t
e
r'
into co
m
posit
e
-mode
s
commit
|
commitdiff
|
tree
2009-11-03
Step
h
an Saalfeld
AddARGBComposi
t
e can ha
n
dle imag
e
wit
h
no a
l
p
ha
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
ephan Saalfel
d
Ad
d
ed a comme
n
t in Align
commit
|
commitdiff
|
tree
2009-10-14
Stephan
Saalf
e
ld
r
e
factored a misnamed metho
d
and
s
tatified so
m
e
p
arameters in
commit
|
commitdiff
|
tree
2009-10-14
S
t
eph
a
n Sa
a
lfeld
synchronized
p
otentially con
c
urr
e
ncy unsafe m
a
tch
insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Sa
a
lfeld
Fixed
t
he geo
m
et
r
y issues
a
nd a
d
d
e
d support for
a
ll
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan S
a
alfeld
Cat
c
hing a
n
d
handl
i
ng OutOfMe
m
o
r
yErr
o
rs in Feature
E
xtra
c
tion
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
C
o
smet
i
c
s
in AlignTask
a
nd Sim
i
larityMo
d
el2
D
commit
|
commitdiff
|
tree
2009-10-08
Stephan
S
a
a
lfeld
l
e
n
s
co
r
rectio
n
st
o
ps now later but lat
e
st aft
e
r the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saa
l
feld
Merge branch 'master
'
of
s
sh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saalfeld
Mer
g
e b
r
anch 'ma
s
ter' of
ssh://repo
.
or
.
cz/
s
rv/gi
t
/
t
rakem
2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Sa
a
lfel
d
Fix
0
.
5gr
e
y background for BytePr
o
c
es
s
ors in
commit
|
commitdiff
|
tree
2009-09-24
Steph
a
n Saal
f
eld
Merge branch 'master' of ssh://repo
.
o
r
.
cz/srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2009-09-23
Stephan Saa
l
feld
Saving a l
o
t of RA
M
i
n visu
a
lizing th
e
lens di
s
t
ortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
tephan
S
aalfe
l
d
Merge
branch 'stack' into alig
n
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalf
e
ld
Hopefully fixed
t
h
e scali
n
g
in Stack
commit
|
commitdiff
|
tree
2009-09-17
Steph
a
n S
a
alfeld
Merge branch 's
t
ac
k
' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Sa
a
lfeld
Merge branch 's
t
ack' of ssh://repo
.
or
.
c
z/srv/git/trak
e
m2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Step
h
an Saalfe
l
d
Merge b
r
anch 'stack'
i
nto align
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saa
l
feld
s
e
parated the actual alignLay
e
rsLinearly j
o
b f
r
om the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan
Saalfe
l
d
Loader uses db_lock
commit
|
commitdiff
|
tree
2009-09-16
Steph
a
n Sa
a
lfeld
Merge branch 'align' of
s
sh://re
p
o
.
or
.
cz/sr
v
/g
i
t
/tr
a
kem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
S
t
e
pha
n
Saalfe
l
d
Fixed a bug
t
hat prevented
the mu
l
ti-la
y
er m
o
s
aicki
n
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
St
e
p
h
an Saalf
e
l
d
Merge
branch
'stack' of ssh://repo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
St
e
phan Saa
l
feld
a
v
ery intermed
i
a
t
e com
m
it that
i
n
t
errupts me at s
t
ar
t
ing the
commit
|
commitdiff
|
tree
2009-09-11
St
e
phan Saalfeld
decach
i
ng wa
s
no
t
success
f
ul---trui
n
g an
o
ther one
.
.
.
commit
|
commitdiff
|
tree
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