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use MovingLeastSquaresTransform2 in ElasticLayerAlignment
2011-08-10
Stephan S
a
alfeld
use
Mo
v
ingLea
s
tSquaresT
r
an
s
form2
i
n
Elast
i
cLa
y
erAlignment
commit
|
commitdiff
|
tree
2011-08-10
S
t
ephan S
a
alfeld
use MovingLeas
t
SquaresTransform2 in ElasticMo
n
tage
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use Mo
v
ingLeas
t
SquaresTran
s
form2 f
o
r warping in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use MovingLeastSquar
e
sTransfo
r
m2 in NonLi
n
earTransformMode
commit
|
commitdiff
|
tree
2011-08-10
S
t
ephan
S
a
a
lfeld
Added MovingLeastS
q
uaresTransform2 extending
commit
|
commitdiff
|
tree
2011-08-07
Stephan S
a
a
l
feld
Elastic
L
ayerAli
g
nment: When transferring layer transf
o
rm
a
tio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Ste
p
han Saalfeld
flush cac
h
e between
layer ex
p
orts (the c
a
che is otherwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saalfeld
free memory
b
efore running memor
y
demanding
t
asks in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saal
f
eld
fi
x
ed
b
ug in linearLa
y
e
r
Ali
g
n
ment, cal
c
ulat
e
and apply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stephan
S
aalfeld
fl
u
sh image cache memor
y
before
d
oing a mont
a
ge
commit
|
commitdiff
|
tree
2011-06-29
S
tephan Saa
l
feld
ElasticMontage:
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfeld
Merge
branch '
m
ast
e
r
'
into elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalf
e
ld
Merge branch 'master' into elastic-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
Added `seems-
t
o-work' el
a
stic mont
a
gin
g
.
Missi
n
g
p
arts are
commit
|
commitdiff
|
tree
2011-06-28
S
teph
a
n S
a
alfeld
* made Patch
.
Pa
t
ch
I
mage a static class (it has no
references
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan Saalfe
l
d
ad
d
ed Pair to A
b
str
a
c
t
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saal
f
eld
Align
.
java: moved twice implement
e
d
M
odel f
i
tting
and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfeld
E
last
i
cAlign us
e
s the local siftParam for ident
i
f
y
ing
commit
|
commitdiff
|
tree
2011-06-23
Step
h
an S
a
a
l
feld
TransformM
e
s
h
M
appingWithMask rounds triangel bo
u
nding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
tephan S
a
alf
e
ld
attempt to get s
h
ared
f
unction for
layer ali
g
nment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
t
epha
n
S
a
a
l
feld
titled mont
a
ge
dialog `Monta
g
e' cons
i
stently with
t
he
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfel
d
Fixed Threa
d
interrupt
i
on in Align
.
connectTilePai
r
s
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan Saalfe
l
d
`Montage all images in this layer':
commit
|
commitdiff
|
tree
2011-06-17
Stephan S
a
alfeld
Elast
i
cAli
g
n
f
i
x
e
s:
commit
|
commitdiff
|
tree
2011-06-16
S
tephan Saal
f
eld
M
erge branch 'master' into elastic-align
commit
|
commitdiff
|
tree
2011-06-16
S
t
ephan Saalfeld
comme
n
t test
rpint
commit
|
commitdiff
|
tree
2011-05-27
Stephan Saalfeld
sta
r
ted with
E
lastic A
l
ign
m
ent,
layer
a
l
i
gnment already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
S
t
e
phan
S
aalfeld
Merge b
r
anch 'mast
e
r
'
into mpicb
g
-model-interf
a
ce
commit
|
commitdiff
|
tree
2010-11-20
Stephan Saalfeld
tracking mpicbg model-
i
nterface
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saalfeld
mpicb
g
.
trakem2
.
transform
.
Tra
n
s
f
ormM
e
sh extrapolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfe
l
d
Fixed
bug 202
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
* add minimal absolute number of inliers as a
par
a
meter
commit
|
commitdiff
|
tree
2010-08-16
Ste
p
han Saalfeld
Me
r
g
e bra
n
ch 'master'
i
nto rejectcons
t
antbackgroun
d
commit
|
commitdiff
|
tree
2010-08-16
Stephan
S
aalfel
d
Merg
e
branch 'maste
r
' of ss
h
:
//rep
o
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2010-08-07
S
tephan S
a
alfeld
Merge
b
r
an
c
h 'rejectconstantbackground' of
ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Step
h
an Saa
l
feld
find
i
ng c
o
nnected til
e
s
moved
into base
class
commit
|
commitdiff
|
tree
2010-08-07
S
t
ephan Saal
f
eld
use
out
l
ier filter in opt
i
m
i
zer
commit
|
commitdiff
|
tree
2010-08-07
St
e
ph
a
n Saa
l
f
e
l
d
f
inding
c
onne
c
t
e
d tiles moved into
b
as
e
c
lass
commit
|
commitdiff
|
tree
2010-08-06
S
t
ephan Saalfel
d
Me
r
ge branch 'reje
c
t
c
onstantbackground' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
St
e
pha
n
Saalfeld
Fix wrong parameter c
h
oice in AlignTask
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
Merge branc
h
'
master'
into rejectconstantbac
k
ground
commit
|
commitdiff
|
tree
2010-08-05
Ste
p
han Saalfe
l
d
extended verbosity
of the tile matchi
n
g
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saal
f
eld
Added a filt
e
r to rej
e
ct
constant ba
c
k
g
round pattern
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Mer
g
e
branch 'mas
t
er'
of ss
h
://repo
.
or
.
cz/srv/git/tr
a
k
e
m2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Sa
a
lfeld
Recover
e
d the m
o
st im
p
o
rtatn
o
f Ignacio'
s
previo
u
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Merge bra
n
c
h
'master' into lens-model
commit
|
commitdiff
|
tree
2010-03-19
S
teph
a
n
Sa
a
l
fel
d
C
r
eated Polyno
m
i
a
lM
o
d
e
l2D, a wrapper fo
r
Verena Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
Stephan Saalfeld
Added the maximal acc
e
pted fa
c
tor to mean PointM
a
t
c
h
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
S
t
ep
h
an Saalfeld
Re
m
ove match
e
s with
large disp
l
ace
m
ent from
the
configura
t
i
on
commit
|
commitdiff
|
tree
2010-02-23
Stephan Sa
a
l
feld
fixed calibration of s
c
aled snapshots
when exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stepha
n
Saalfeld
fi
x
ed
calibration
of sca
l
ed s
n
aps
h
ots
commit
|
commitdiff
|
tree
2010-02-19
Ste
p
han Saalfeld
A
lignTask:
w
hen deforming,
t
iles ARE
a
l
r
eady
in place
commit
|
commitdiff
|
tree
2010-02-19
S
teph
a
n Saalf
e
ld
AlignTask:
Fixe
d
missuse of a static variab
l
e
.
commit
|
commitdiff
|
tree
2010-02-19
S
t
e
phan
S
aal
f
eld
R
e
m
o
v
e t
h
e never u
s
ed shak
e
method from abstract Model
.
commit
|
commitdiff
|
tree
2010-02-10
S
tepha
n
Saalfeld
Fixed a b
u
g
that made
th
e
origin
a
l
i
mage appear beh
i
nd
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
Synchro
n
ized screenPatch
R
anges
commit
|
commitdiff
|
tree
2010-02-09
Stepha
n
Saalfel
d
m
inor c
l
eanup
i
n lenscorrection
commit
|
commitdiff
|
tree
2010-02-09
Stephan
S
aalfeld
Added Transform
M
eshMapp
i
ngWithMa
s
ks fo
r
more
effic
i
ent
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Step
h
a
n Saalfeld
NonLinearTr
a
nsformM
o
de c
a
n pro
p
agate the transforma
t
ion
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stepha
n
Saalfeld
For now, don
'
t s
c
al
e
maxEpsilon
.
commit
|
commitdiff
|
tree
2010-02-07
St
e
phan Saalfeld
A
lig
n
Multi-Layer-Mosaic: Use u
p
to 2x maxOctaveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
te
p
han Saalfeld
Finished t
h
e
def
o
rm operation to
c
o
nsid
e
r
all g
r
ap
h
s
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saa
l
feld
Fixed Float
.
MI
N
_V
A
LUE to F
l
oa
t
.
MAX_VALUE whe
r
e it
r
e
main
e
d
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saa
l
fel
d
alig
n
Mu
l
tiLayerMosai
c
finally uses graph-based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
h
an Saalf
e
ld
c
h
a
ng
e
d default value of SIFT
.
maxOctave
S
ize = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
fixed pairO
v
erlappingTiles( List, List
,
List[] )
commit
|
commitdiff
|
tree
2010-01-28
S
tephan Sa
a
l
f
eld
added corresp
o
n
d
e
n
ce weight as a parameter
t
o Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-17
Steph
a
n Saalf
e
ld
Merge br
a
nc
h
'master' into bunw
a
rpj
commit
|
commitdiff
|
tree
2009-11-05
S
tephan Sa
a
l
f
eld
Merge branc
h
'master' into bunwarpj
commit
|
commitdiff
|
tree
2009-11-04
Stephan Saalfeld
Merge branch
'm
a
ster' into bunwar
p
j
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfeld
F
i
x
ed Composi
t
eModes to
work in the following config
u
r
ations
commit
|
commitdiff
|
tree
2009-11-03
Stephan
S
aalf
e
l
d
Revert "Work around
anno
y
ing bug in Gra
p
hics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfe
l
d
Fixed C
o
m
positeM
o
d
es to wor
k
in the follow
i
ng con
f
igurations
commit
|
commitdiff
|
tree
2009-11-03
Steph
a
n
S
aa
l
fel
d
Se
p
arating Ali
g
nLayers
T
ask from Ali
g
nTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Revert "Work around ann
o
ying bug in Gra
p
hic
s
2D
,
in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
St
e
p
han Sa
a
lfeld
Merg
e
branch 'mas
t
e
r' into composite-modes
commit
|
commitdiff
|
tree
2009-11-03
Ste
p
h
a
n Saa
l
f
eld
AddARGBC
o
mposit
e
can
h
andle im
a
g
e
with no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
S
tephan Saalfeld
Added
a
commen
t
in Align
commit
|
commitdiff
|
tree
2009-10-14
S
t
e
pha
n
Saalfeld
refact
o
re
d
a misnamed method and stati
f
i
e
d some parameters in
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfeld
sy
n
chronized potentially concurren
c
y unsafe
match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Sa
a
lfeld
Fixed
t
he geometry issu
e
s and added
su
p
po
r
t fo
r
a
l
l
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saalfeld
Catching and handling OutO
f
MemoryErrors
i
n F
e
atureExtraction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Step
h
an Saa
l
fe
l
d
Cosmetics
i
n AlignTask an
d
S
i
milar
i
tyModel2D
commit
|
commitdiff
|
tree
2009-10-08
S
t
ephan Saalfeld
lenscorre
c
ti
o
n st
o
p
s
now later but latest after th
e
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalf
e
ld
Merge br
a
n
ch
'master' of ssh://re
p
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
S
t
e
p
han Saalfeld
Me
r
ge branch 'mas
t
er' of ssh:
/
/repo
.
o
r
.
cz/srv/git/t
r
a
k
em2
commit
|
commitdiff
|
tree
2009-10-07
S
t
e
phan
Saa
l
feld
Fix 0
.
5
grey background for ByteProcessors in
commit
|
commitdiff
|
tree
2009-09-24
S
t
ephan
Saa
l
feld
Me
r
ge
b
ranch 'master
'
of ssh:/
/
re
p
o
.
o
r
.
cz/s
r
v/gi
t
/
trakem2
commit
|
commitdiff
|
tree
2009-09-23
Ste
p
ha
n
Saalfe
l
d
Sa
v
i
ng a lot of R
A
M in visua
l
izing
t
h
e lens distortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan
S
a
alfel
d
Merge branch 'stack' int
o
align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Hopefully
f
ixed the sca
l
ing in Stack
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Me
r
ge
b
ranch
'stac
k
' into alig
n
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan
S
aa
l
feld
Merge b
r
anch 's
t
ack' of s
s
h:/
/
r
epo
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalf
e
ld
Merge branch
'
stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
s
e
parat
e
d
th
e
actual
alig
n
Layers
L
inearly job from th
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Step
h
an Saalfeld
Loader uses db_
l
ock
commit
|
commitdiff
|
tree
2009-09-16
Stephan
Saal
f
eld
Merg
e
branch '
a
lign' of ss
h
://r
e
po
.
or
.
cz/srv/git/trake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
Stepha
n
S
aalfe
l
d
Fixed a bug t
h
at p
r
ev
e
nted
t
he multi-layer mosaicking
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
S
tep
h
an S
a
alfeld
Mer
g
e bra
n
ch 'sta
c
k
' of ssh://repo
.
or
.
cz
/
srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan S
a
alfeld
a very
i
ntermediate commit that i
n
ter
r
upts
m
e
at starting the
commit
|
commitdiff
|
tree
next