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use MovingLeastSquaresTransform2 in ElasticLayerAlignment
2011-08-10
Stephan Saalfeld
use Moving
L
eastSqua
r
esTransform2 in ElasticLayerAlignment
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saal
f
eld
us
e
MovingLeastSquaresTransform2 i
n
ElasticMontage
commit
|
commitdiff
|
tree
2011-08-10
St
e
ph
a
n Saalfeld
use MovingLeastSquaresTr
a
nsform2
for
warping in m
u
lti
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
S
tephan Saalfeld
use Moving
L
ea
s
tSqua
r
esTransf
o
rm2 in NonLinearTransfo
r
mMode
commit
|
commitdiff
|
tree
2011-08-10
Steph
a
n
S
a
al
f
eld
A
d
ded
M
ovingL
e
astSquares
T
rans
f
orm2 exten
d
ing
commit
|
commitdiff
|
tree
2011-08-07
Stephan S
a
alfeld
Elast
i
cLayerAlignment: When tr
a
nsf
e
r
ring layer t
r
ans
f
ormatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan Sa
a
lfeld
flush cac
h
e betw
e
en l
a
y
e
r
exports (t
h
e cache
is otherwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Step
h
an
S
aalfeld
free
m
emo
r
y b
e
for
e
running memory
dema
n
ding
t
asks in
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saalfel
d
fix
e
d
b
ug in lin
e
arLayerAlignment, calculate
and appl
y
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
S
te
p
han Saalfeld
flus
h
i
mag
e
c
a
che memory befor
e
doing a montag
e
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saalfe
l
d
ElasticMontag
e
:
commit
|
commitdiff
|
tree
2011-06-29
Stephan
S
aalfe
l
d
M
erge
branch 'mast
e
r
' i
n
to elast
i
c-align
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saa
l
feld
Merge branch 'master' into elastic-alig
n
commit
|
commitdiff
|
tree
2011-06-28
St
e
phan
S
a
alfeld
Added `seem
s
-t
o
-
w
o
r
k' elastic m
o
nt
a
ging
.
Missin
g
parts a
r
e
commit
|
commitdiff
|
tree
2011-06-28
Step
h
an
Saal
f
eld
* ma
d
e Pat
c
h
.
P
a
t
chImage a stati
c
class
(it
h
as no referen
c
es
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan Saalfeld
added Pair
t
o Abst
r
act
commit
|
commitdiff
|
tree
2011-06-23
Ste
p
han
Saalfel
d
Al
i
gn
.
jav
a
: moved twice implem
e
nted Mo
d
e
l
fitting and
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Step
h
an Saalfel
d
ElasticAlign
u
ses
t
he
l
ocal siftPa
r
am fo
r
iden
t
ifying
commit
|
commitdiff
|
tree
2011-06-23
Step
h
an Saalfeld
T
r
ansform
M
eshMappi
n
gWit
h
Mask roun
d
s triangel bounding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Ste
p
han Saalfel
d
atte
m
pt
t
o get shared f
u
n
c
tion for la
y
er al
i
gnment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
St
e
ph
a
n
S
a
alf
e
l
d
tit
l
ed
m
ontage dial
o
g `
M
ontage' cons
i
stently with
the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Step
h
an Saal
f
e
ld
F
ixed Thread interruption
in Align
.
connec
t
TilePairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan
Saalfeld
`Mon
t
a
g
e all images in t
h
i
s
lay
e
r
':
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalfeld
ElasticAlign
f
i
xes:
commit
|
commitdiff
|
tree
2011-06-16
Stephan S
a
alfeld
Merge branch 'master' into ela
s
tic-align
commit
|
commitdiff
|
tree
2011-06-16
Stephan Saalfeld
comment te
s
t r
p
int
commit
|
commitdiff
|
tree
2011-05-27
St
e
phan Saalfeld
s
tar
t
ed with Elastic Alig
n
m
e
nt, layer alignme
n
t
a
lread
y
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan
S
aalf
e
l
d
Merge bran
c
h
'mast
e
r' in
t
o mpicb
g
-model-in
t
erface
commit
|
commitdiff
|
tree
2010-11-20
S
t
e
phan
S
a
a
lfeld
t
rackin
g
mpicbg mo
d
el-interface
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saalfel
d
m
p
i
cbg
.
trakem2
.
t
ra
n
s
f
o
rm
.
Transform
M
e
sh e
x
t
rap
o
late
s
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Fixed bug 202
commit
|
commitdiff
|
tree
2010-08-16
Stephan Sa
a
l
f
e
ld
* add minimal ab
s
olute
n
umber
o
f inl
i
ers as a parameter
commit
|
commitdiff
|
tree
2010-08-16
S
t
e
phan
Saalf
e
ld
Merg
e
branch 'master' into rejectconsta
n
tback
g
rou
n
d
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
Merge branch 'master' of ssh://
r
e
p
o
.
o
r
.
cz/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2010-08-07
Stepha
n
Saalfeld
Mer
g
e branch 'rejectconstant
b
ac
k
gro
u
nd' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Stephan S
a
alfeld
fin
d
ing connected
t
iles moved into base class
commit
|
commitdiff
|
tree
2010-08-07
S
t
eph
a
n Saal
f
e
l
d
use ou
t
l
ier filter in optimizer
commit
|
commitdiff
|
tree
2010-08-07
S
tephan
S
aalfeld
finding c
o
nnected tiles moved in
t
o base class
commit
|
commitdiff
|
tree
2010-08-06
St
e
p
ha
n
Saalfeld
Merge
b
ranch 'reje
c
tconstantb
a
ckground' of s
s
h://rep
o
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stephan
Saalfeld
Fix wrong parameter ch
o
ice
in AlignTa
s
k
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
Merge
branch 'master' into rejectco
n
stantb
a
ckg
r
o
und
commit
|
commitdiff
|
tree
2010-08-05
Stephan
Saalfeld
exte
n
ded verbosity
o
f the t
i
l
e
match
i
ng
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
A
dded a filter to
r
eject con
s
ta
n
t background patterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Ste
p
han Sa
a
lfeld
Mer
g
e branch 'mas
t
er'
o
f
s
s
h://
r
epo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfeld
Rec
o
vered the mo
s
t i
m
portatn
o
f Ignaci
o
's previou
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stepha
n
S
a
al
f
eld
Mer
g
e
branch 'master'
into
l
ens-model
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saa
l
feld
Created P
o
lynomialModel
2
D
,
a w
r
apper for Ve
r
en
a
Kayn
i
g's
commit
|
commitdiff
|
tree
2010-03-18
Ste
p
han Saalfeld
Add
e
d t
h
e maximal
a
ccept
e
d f
a
ctor
to mean Po
i
ntMa
t
c
h
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Steph
a
n
Saalf
e
ld
Remove matches with large displac
e
ment fro
m
the conf
i
gurati
o
n
commit
|
commitdiff
|
tree
2010-02-23
Steph
a
n Saalfel
d
f
ixed cal
i
bration o
f
scaled snapshots
w
hen exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan Saa
l
feld
fixed ca
l
ibration of scaled
s
napshot
s
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
AlignTask:
when deforming, tiles
A
RE
al
r
ea
d
y in place
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
AlignTask:
F
ixed missuse of a s
t
a
ti
c
varia
b
le
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
Rem
o
ve
the ne
v
er u
s
e
d s
h
ake method from ab
s
t
r
act Model
.
commit
|
commitdiff
|
tree
2010-02-10
Stephan
S
aalfeld
F
i
x
e
d a bug that
m
ade the
o
riginal image appear
b
ehind
commit
|
commitdiff
|
tree
2010-02-09
Stepha
n
Saa
l
feld
Synchronized scr
e
enPatchRanges
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfeld
m
i
n
o
r
cleanup in le
n
scorrection
commit
|
commitdiff
|
tree
2010-02-09
Steph
a
n Saalfeld
Added
T
ra
n
sfor
m
MeshMap
p
i
ngWi
t
hMasks for more eff
i
cient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
Stephan S
a
alfeld
NonLinearTr
a
nsformMode can
propagate the transformati
o
n
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
F
o
r no
w
, don't scale
m
axEpsi
l
on
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfel
d
Align Multi-
L
ayer-Mo
s
aic:
Use up to 2x ma
x
O
ctaveSize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
S
t
ephan Saalfeld
Finished the
d
eform operation to cons
i
der all
graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
St
e
pha
n
Saalfeld
Fixed Float
.
M
IN_VALUE to Floa
t
.
M
A
X
_VALUE w
h
ere it remai
n
ed
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
alig
n
M
ultiLayerMosaic fi
n
ally uses graph-based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
han Saal
f
eld
c
hanged
d
e
f
au
l
t value of S
I
FT
.
maxOctaveSize =
6
00
commit
|
commitdiff
|
tree
2010-01-29
Stephan
S
a
a
l
f
eld
fixed pair
O
ve
r
lappin
g
Tiles( Lis
t
, List, List[]
)
commit
|
commitdiff
|
tree
2010-01-28
Stepha
n
Saalfeld
added correspondence weight as
a
parameter to Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-17
S
tephan Saa
l
feld
Merge branch 'm
a
s
t
er' into bunwarpj
commit
|
commitdiff
|
tree
2009-11-05
Stephan Saalf
e
ld
Merge branch 'master'
i
n
to bun
w
arp
j
commit
|
commitdiff
|
tree
2009-11-04
Step
h
an Saa
l
feld
Me
r
ge branch 'master' into bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
Fixed CompositeModes to work in th
e
followin
g
confi
g
ur
a
tions
commit
|
commitdiff
|
tree
2009-11-03
Ste
p
han Saalfeld
R
e
vert "Wo
r
k
a
round an
n
oying
b
ug in Graphics2D,
in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfeld
Fixed
Com
p
o
s
i
teMo
d
es to work i
n
the f
o
l
lowi
n
g configurations
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan Saalfeld
Separa
t
ing AlignLayers
T
ask from AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
epha
n
Saalfeld
R
e
v
e
r
t "W
o
rk ar
o
und
annoy
i
ng bug in Graphic
s
2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
S
tephan Saalfeld
Merge
b
ranch 'maste
r
' into comp
o
site
-
modes
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
AddARGB
C
omposite c
a
n handle image with no al
p
ha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalf
e
ld
Added a comment in
Ali
g
n
commit
|
commitdiff
|
tree
2009-10-14
Steph
a
n Saalfel
d
r
ef
a
ctore
d
a misnamed method
a
nd statifie
d
som
e
parameter
s
in
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfeld
synchron
i
zed poten
t
ially concurrency u
n
safe match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saalfeld
Fixed the
ge
o
metr
y
issues
and ad
d
ed s
u
ppo
r
t for al
l
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saalfe
l
d
Catching and handling Ou
t
O
f
M
emoryErr
o
rs in Fe
a
tureE
x
t
raction
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saal
f
eld
Cosm
e
tics i
n
AlignTask and Similarit
y
M
o
del2D
commit
|
commitdiff
|
tree
2009-10-08
Stephan
S
aalfe
l
d
l
enscorrection s
t
ops now
l
ater but l
a
te
s
t after the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalfeld
Mer
g
e branch 'ma
s
ter' of ssh:
/
/
r
epo
.
or
.
cz/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan S
a
alf
e
ld
Merge bran
c
h 'm
a
ste
r
' o
f
ssh://r
e
po
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Step
h
an Saal
f
eld
Fix 0
.
5
g
r
ey backgroun
d
for ByteProc
e
sso
r
s in
commit
|
commitdiff
|
tree
2009-09-24
S
t
ephan Saalfeld
Merge branch
'm
a
ster' of
ssh://repo
.
or
.
c
z
/srv/git/
t
rak
e
m2
commit
|
commitdiff
|
tree
2009-09-23
S
t
ephan Saalfe
l
d
S
av
i
ng a
lot of RAM in vis
u
alizing the len
s
dis
t
ortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan
Saalfeld
Merge bra
n
ch 'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Ho
p
eful
l
y
f
ixed
the scaling in
S
t
ack
commit
|
commitdiff
|
tree
2009-09-17
Stephan
S
aalf
e
ld
Merge branc
h
'
s
tack'
i
nto align
commit
|
commitdiff
|
tree
2009-09-17
Step
h
an Saalfeld
Merge bran
c
h
's
t
ack'
o
f ssh://repo
.
o
r
.
c
z
/sr
v
/
g
it/trake
m
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
S
t
ephan
S
aalfe
l
d
Merge branch '
s
tack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan
Saalfeld
separated the actual align
L
ayersLinear
l
y job from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Steph
a
n Saa
l
f
e
ld
Load
e
r
u
ses db_lock
commit
|
commitdiff
|
tree
2009-09-16
Stephan Saalfeld
Merg
e
branc
h
'align' of ssh:/
/
re
p
o
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
S
te
p
han Saal
f
eld
Fixed a
bug tha
t
prevented the multi-layer mosaicking
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Steph
a
n
S
a
alf
e
ld
Mer
g
e branch 'sta
c
k
' of ssh://repo
.
or
.
cz/
s
rv/git/trakem
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
Saa
l
feld
a very in
t
ermediate commit
t
hat interrupts me at star
t
ing t
h
e
commit
|
commitdiff
|
tree
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