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use MovingLeastSquaresTransform2 in ElasticLayerAlignment
2011-08-10
Ste
p
han
S
a
alfeld
use Movi
n
g
L
eastSquaresTransfor
m
2 in
E
lastic
L
ayerAlignmen
t
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use Movin
g
Le
a
stSquaresTransform2 in ElasticMont
a
ge
commit
|
commitdiff
|
tree
2011-08-10
S
teph
a
n S
a
alfeld
use Mov
i
ngL
e
astSq
u
ar
e
sTr
a
ns
f
o
rm2
f
or warping in multi
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
S
tephan
Saalfeld
use Movi
n
gL
e
a
stSq
u
aresTran
s
form2 in NonLinea
r
Tr
a
nsformMode
commit
|
commitdiff
|
tree
2011-08-10
S
tephan Saalfeld
A
dded MovingLe
a
s
t
Square
s
T
r
ansform2
e
xten
d
i
n
g
commit
|
commitdiff
|
tree
2011-08-07
Stephan
Saalfeld
ElasticLayerAlignme
n
t
:
W
h
en transferring
layer
tran
s
f
ormatio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
Stephan Saalfeld
flush cache betw
e
e
n layer ex
p
or
t
s (the cache
is
o
therwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stepha
n
S
a
alfel
d
free memory bef
o
re runn
i
ng memor
y
de
m
anding tas
k
s i
n
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Stephan Saalfeld
fixed
b
ug in linearLaye
r
Align
m
e
n
t,
calculate an
d
apply
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
S
t
e
phan Saa
l
f
e
ld
flush image ca
c
he memory
b
efore doing a mont
a
ge
commit
|
commitdiff
|
tree
2011-06-29
S
te
p
han Saal
f
eld
E
la
s
ticMo
n
tage:
commit
|
commitdiff
|
tree
2011-06-29
Stephan Saa
l
feld
Merge branch 'master' into
elastic-ali
g
n
commit
|
commitdiff
|
tree
2011-06-28
Stepha
n
S
a
a
lfeld
Mer
g
e bran
c
h 'master' into elastic-
a
lign
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
Ad
d
e
d
`seem
s
-to-wo
r
k' elasti
c
montag
i
ng
.
Mi
s
sing parts
are
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
*
m
a
de Patch
.
PatchI
m
age a static class (
i
t ha
s
n
o
re
f
erences
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
S
tep
h
an
S
aalfeld
added Pair to Abstract
commit
|
commitdiff
|
tree
2011-06-23
S
t
ephan
Saalf
e
l
d
Align
.
j
ava: mov
e
d t
w
ice impleme
n
ted Model fi
t
t
i
ng an
d
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
Stephan Saalfeld
Elas
t
icAlign uses the
l
ocal siftParam for identifying
commit
|
commitdiff
|
tree
2011-06-23
St
e
p
han Saalfeld
Transfo
r
mMes
h
Map
p
ingWithMask rou
n
d
s triangel bound
i
ng
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saa
l
f
e
ld
attempt to ge
t
shared functio
n
for layer alignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
S
t
epha
n
Saalfel
d
titled m
o
ntag
e
dialog
`Montag
e
'
consistently with the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
St
e
phan Saalfeld
Fixed Thread in
t
erruption
in Align
.
connectTilePai
r
s
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan Saa
l
feld
`
Montage
a
ll images in this layer':
commit
|
commitdiff
|
tree
2011-06-17
Stephan S
a
a
l
feld
Elas
t
icAlign fixes:
commit
|
commitdiff
|
tree
2011-06-16
Steph
a
n Saalfeld
M
erge branch 'master' into elastic-align
commit
|
commitdiff
|
tree
2011-06-16
Stepha
n
Saal
f
eld
comment test rpint
commit
|
commitdiff
|
tree
2011-05-27
Stephan
S
a
alfeld
started with Ela
s
t
i
c Alignme
n
t
,
layer alignment
already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
S
teph
a
n Saalfeld
Merge branch '
m
a
s
ter' into mpicbg-m
o
d
e
l-interface
commit
|
commitdiff
|
tree
2010-11-20
S
t
epha
n
Saalfeld
tr
a
cki
n
g mpicbg model-
i
nterfac
e
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saalfeld
mpicbg
.
tra
k
e
m
2
.
t
ransform
.
TransformMesh extrapolates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
S
t
e
pha
n
Saalfeld
Fixed bug 202
commit
|
commitdiff
|
tree
2010-08-16
Stephan Saalfeld
*
add minimal ab
s
olute num
b
er of inli
e
rs
a
s
a par
a
meter
commit
|
commitdiff
|
tree
2010-08-16
Ste
p
han Saalfeld
Merge branch 'maste
r
' into reje
c
tconstantba
c
k
grou
n
d
commit
|
commitdiff
|
tree
2010-08-16
Steph
a
n
S
aalfeld
Merge branch 'master' of s
s
h://repo
.
or
.
cz/srv/git
/
t
r
ak
e
m
2
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfel
d
Merge branch 'rejectc
o
nstantbackgro
u
n
d
' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saalfeld
find
i
ng
c
onnec
t
ed tiles move
d
into base class
commit
|
commitdiff
|
tree
2010-08-07
Step
h
an Saalfeld
u
s
e o
u
tlier filt
e
r in opt
i
mizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan Saal
f
eld
f
i
nding
c
o
nnect
e
d t
i
le
s
mov
e
d i
n
to bas
e
class
commit
|
commitdiff
|
tree
2010-08-06
Ste
p
han Saalf
e
ld
Mer
g
e branch 'rejectconstantba
c
k
g
rou
n
d' of ss
h
://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Stephan Saalfeld
Fix
w
rong parameter choice in AlignTa
s
k
commit
|
commitdiff
|
tree
2010-08-05
Stepha
n
Sa
a
l
f
eld
Merge branch 'master
'
into rejectconstantbackgro
u
n
d
commit
|
commitdiff
|
tree
2010-08-05
Stepha
n
Saalfel
d
ex
t
ended
verbosit
y
of
t
he tile matchin
g
commit
|
commitdiff
|
tree
2010-08-05
Stephan Saalfeld
Added a filt
e
r to rejec
t
constan
t
backgroun
d
p
a
tterns
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Ste
p
han
S
aalfeld
Mer
g
e b
r
anch 'master
'
of ssh
:
//repo
.
o
r
.
c
z
/
srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2010-03-19
S
tephan Sa
a
lfeld
Recovered the
most im
p
ortatn of Ignacio's previous
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfel
d
Merge branch 'ma
s
ter' into lens-model
commit
|
commitdiff
|
tree
2010-03-19
Ste
p
han Saalfeld
Created
PolynomialModel2
D
, a
w
r
appe
r
fo
r
Verena Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
Step
h
an Saalfeld
Add
e
d the
m
aximal accepte
d
factor to mean Poin
t
Match
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Saalfeld
Remove matches with la
r
ge displacem
e
nt fro
m
the
c
onfi
g
u
ration
commit
|
commitdiff
|
tree
2010-02-23
St
e
phan
Saalfeld
f
i
xed calibratio
n
of scaled
sn
a
pshot
s
when exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan
Saalfeld
fi
x
ed calibratio
n
of
sc
a
le
d
snapshots
commit
|
commitdiff
|
tree
2010-02-19
Stephan Saalfeld
A
l
ignTask:
whe
n
deforming
,
ti
l
e
s A
R
E
a
lready
in place
commit
|
commitdiff
|
tree
2010-02-19
Steph
a
n Saalfeld
Al
i
gnTask: Fixed missuse o
f
a static variable
.
commit
|
commitdiff
|
tree
2010-02-19
Stephan
S
aalfel
d
Rem
o
ve the never used sha
k
e met
h
od from abstract Mode
l
.
commit
|
commitdiff
|
tree
2010-02-10
St
e
phan Saal
f
eld
Fixed
a
bug that made the
o
r
i
ginal imag
e
appear behind
commit
|
commitdiff
|
tree
2010-02-09
St
e
p
han Saal
f
eld
Synchroniz
e
d screenPatchRang
e
s
commit
|
commitdiff
|
tree
2010-02-09
Stephan
Saalfel
d
minor clean
u
p in l
e
nscorrection
commit
|
commitdiff
|
tree
2010-02-09
St
e
phan Saalf
e
ld
Adde
d
Tran
s
formMeshMappingW
i
thMasks
f
or mo
r
e efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
St
e
phan S
a
a
l
feld
NonLinea
r
Transfor
m
Mode can
p
ropaga
t
e t
h
e transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalfeld
For now, don't scal
e
maxEpsil
o
n
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Saalf
e
ld
A
l
ign Multi
-
Layer-Mos
a
ic: Use up
t
o 2x max
O
ctaveSiz
e
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Sa
a
lfeld
Finished
the deform op
e
rati
o
n to
c
onsider all gra
p
hs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Steph
a
n Saalfeld
Fixe
d
F
l
oat
.
MIN
_
V
ALUE to Fl
o
at
.
MAX_VALU
E
w
here it remained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan S
a
alfel
d
alignMultiLayerMosaic
f
inally u
s
es
gr
a
p
h
-
b
ased pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saa
l
feld
changed default value of SI
F
T
.
maxOctaveSize = 600
commit
|
commitdiff
|
tree
2010-01-29
Ste
p
ha
n
Saalfeld
f
ixed pairOverlappingT
i
les( List, Li
s
t,
Li
s
t
[] )
commit
|
commitdiff
|
tree
2010-01-28
Step
h
an Saalfeld
added c
o
rrespon
d
enc
e
wei
g
ht as a
p
arameter to Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
Stephan
S
aalfe
l
d
M
erge branch 'master' into bunwarpj
commit
|
commitdiff
|
tree
2009-11-04
Stephan
S
aalfe
l
d
Merge bran
c
h 'master'
in
t
o bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalf
e
ld
Fixed Co
m
positeModes
to
w
o
rk in
t
h
e
f
o
llowing configurations
commit
|
commitdiff
|
tree
2009-11-03
Stepha
n
Saalfeld
Re
v
ert
"Work around annoying bug
i
n Graphics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
alfeld
Fi
x
ed Com
p
ositeM
o
d
e
s
t
o work in the following configur
a
tions
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saa
l
feld
Separating Alig
n
LayersTask
f
rom AlignTask
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
R
e
ve
r
t
"W
o
rk arou
n
d annoying
bu
g
in Gra
p
hics2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
Saalf
e
l
d
Merg
e
branch '
m
aster' into composite
-
modes
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan Saalfeld
AddARGBComp
o
site can handle im
a
ge with no alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan S
a
alfeld
A
d
ded a
c
o
m
m
ent
i
n
Ali
g
n
commit
|
commitdiff
|
tree
2009-10-14
Stephan
S
aalfel
d
refactored a misnamed method and
statified some para
m
eter
s
in
commit
|
commitdiff
|
tree
2009-10-14
St
e
ph
a
n
Saalfel
d
synchro
n
ized potent
i
ally concurrency unsaf
e
match insertion
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saalf
e
ld
F
ixed
t
he geometry issu
e
s and
a
dded support for
all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
Stephan Saalfeld
C
a
tching a
n
d handlin
g
O
u
tO
f
Memo
r
yErrors in FeatureEx
t
r
actio
n
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan S
a
alfeld
Cos
m
etics in A
l
ignTas
k
and S
i
mila
r
i
t
y
Model2D
commit
|
commitdiff
|
tree
2009-10-08
Stepha
n
Saalfeld
lens
c
orrection stops now later bu
t
l
atest after the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan Saalf
e
ld
M
erge
branch 'master' of
s
s
h
://
r
ep
o
.
or
.
c
z/s
r
v/
g
it/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan Saal
f
eld
Merge branch
'm
a
ster' of ssh://repo
.
or
.
cz/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2009-10-07
Stephan
S
aalfe
l
d
Fi
x
0
.
5grey backgrou
n
d f
o
r ByteProcess
o
rs in
commit
|
commitdiff
|
tree
2009-09-24
Stephan Saalfeld
Merge
b
ranch 'master
'
of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2009-09-23
S
teph
a
n Saalfe
l
d
S
a
v
i
ng a lot of RAM in visu
a
liz
i
ng th
e
lens distortion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
St
e
p
h
a
n
Saa
l
feld
M
erge bran
c
h
'
s
t
ac
k
' into
a
lig
n
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Hopefully fixed the scalin
g
in Stac
k
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
han Saalfeld
Me
r
ge br
a
nch 'stack'
i
nto a
l
ign
commit
|
commitdiff
|
tree
2009-09-17
Steph
a
n Saalfeld
M
e
r
ge branch 'stack' of ssh://repo
.
or
.
cz/srv/
g
it/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfeld
Merge branc
h
'stack' in
t
o
a
l
ign
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalf
e
ld
separated t
h
e
actu
a
l alignLayersLine
a
rly
j
o
b
fro
m
the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stepha
n
Saal
f
e
l
d
Loader uses d
b
_
l
oc
k
commit
|
commitdiff
|
tree
2009-09-16
Stephan
S
aalfeld
M
erge bra
n
ch 'a
l
ign
'
o
f ssh://rep
o
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
S
tephan Saalfeld
Fixed a bug th
a
t prevent
e
d
t
he mul
t
i-layer mosa
i
c
k
ing
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan Saalf
e
ld
Merge branch 'stack' of
ssh://re
p
o
.
or
.
cz/srv
/
git/tr
a
kem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
Stephan
Saalfeld
a very interme
d
iate commi
t
that interrupts
m
e
at starting the
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saalfeld
decac
h
ing
was not successful---tr
u
ing anot
h
er o
n
e
.
.
.
commit
|
commitdiff
|
tree
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