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Merge remote-tracking branch 'origin'
2014-12-19
St
e
phan Saalfeld
M
er
g
e rem
o
te-tracking
branch 'o
r
igin'
commit
|
commitdiff
|
tree
2014-12-19
S
t
eph
a
n
Saalfeld
re
p
r
oducible build pom-
t
rakem
2
-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
St
e
phan Saalfeld
sepa
r
ated CoordinateTransform parts of le
n
scorrection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan Saalfeld
added
multiple l
e
vel downsamp
l
ing
f
or Color
P
rocessor
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saalfeld
bump to n
e
xt d
e
vel
o
pment cycle
commit
|
commitdiff
|
tree
2014-12-17
S
tephan Saalfe
l
d
second t
r
y to mak
e
reproducib
l
e build pom-trakem2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saalfel
d
M
e
rge branch 'inten
s
ity-tran
s
form'
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfel
d
bump to next de
v
elopment cycl
e
commit
|
commitdiff
|
tree
2014-12-13
S
t
eph
a
n Saalfeld
reproduci
b
l
e build pom-tr
a
kem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Steph
a
n Saalfeld
M
erge remote-tracking branch 'origin
/
master'
commit
|
commitdiff
|
tree
2014-12-12
Step
h
an Saalfel
d
bum
p
to
n
e
w
develo
p
ment cycle
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
S
aalfeld
r
ep
r
oduci
b
le build pom-tr
a
kem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
S
t
ephan Saalfel
d
Merge branch '
m
aster' of
gith
u
b
.
com:trakem2/T
r
akEM2
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
Saalfeld
a
d
de
d
Value
T
oNoise fil
t
er which fills a given
intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-07
Stepha
n
Sa
a
lfel
d
Merge bran
c
h 'maste
r
' into co
o
rdXfmFi
x
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfe
l
d
Me
r
ge remo
t
e-tracking
branch 'ori
g
in/intensi
t
y-tra
n
sform'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
a
d
d
e
d RobustNormal
i
zedLocalContra
s
t
Filter, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan
S
aalfeld
Chan
g
ed default block radius in Normali
z
eL
o
c
al
C
o
n
tra
s
t
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
aalfeld
auto-
r
emoved some train
i
ng
w
hitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan
Saalfeld
added run method that
does no
t
need a wo
r
k
er for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an Saalfeld
auto-rem
o
ved some t
r
ail
i
ng whitesp
a
ce
s
commit
|
commitdiff
|
tree
2014-10-02
S
teph
a
n Saa
l
feld
parallelized inte
r
section tests
f
or pairOv
e
rlappingTiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
lfeld
aut
o
-
f
inali
z
e
c
onstan
t
p
r
oper
t
ies and paramet
e
rs i
n
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
St
e
phan Saalfeld
thr
e
a
d
sa
f
e Utils
.
ensure(
F
ile)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Saalfel
d
f
ixed
bu
g
in generation of alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Step
h
an S
a
alfeld
external
i
zed
Di
s
tortionCo
r
rection
.
run to enable callin
g
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Step
h
a
n Saalfeld
Eclipse a
u
tu
-
cosmetics
i
n D
i
stortionCor
r
ection
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
ha
n
Saa
l
f
e
ld
M
e
r
g
e branch
'ma
s
ter' i
n
to
i
ntensi
t
y-transf
o
rm
commit
|
commitdiff
|
tree
2014-05-19
S
tephan Sa
a
l
f
eld
use standa
r
d writer for coordinatet
r
ansforms
commit
|
commitdiff
|
tree
2013-10-10
St
e
ph
a
n
Saalfeld
replace
d
plugins
.
config with the Fiji version
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalfel
d
Merge branch 'm
a
ster' of ssh://repo
.
or
.
cz
/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalf
e
ld
Merge br
a
nch 'ma
s
ter'
o
f
s
sh://repo
.
or
.
cz/
s
rv
/
git/trake
m
2
commit
|
commitdiff
|
tree
2013-09-19
Stephan S
a
alfeld
P
a
rallel
p
a
irOverla
p
p
i
n
gTiles did
n
ot work and reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Sa
a
lfeld
Mer
g
e branch '
m
aster' of s
s
h://repo
.
or
.
cz/srv
/
git/trakem
2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfe
l
d
re-added leg
a
cy
optimiz
e
r for
s
pring meshes, this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan
Saalfeld
T2-NIT/pom
.
xml c
a
n inherit
version number from pa
r
e
nt
commit
|
commitdiff
|
tree
2013-08-14
Stephan
S
aal
f
e
ld
added m
i
s
s
ing d
e
pendencies to
java3d
c
o
r
e
-
utils
a
n
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stepha
n
Saalfeld
set par
e
nt
p
om of pom-tr
a
kem
2
to pom-fiji
.
2
.
0
.
0-
S
NAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
Sa
a
lfeld
Merge branch 's
p
ring-mesh2
'
of ssh://repo
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
Sa
a
lfeld
Me
r
ge branch 'ma
s
ter' into sp
r
i
ng-mesh
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
l
feld
raised mpicbg dependenc
y
version to 0
.
6
.
1-SNAP
S
HOT
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Saalfeld
raised
d
e
pendency to Si
m
ple_Neurite_Tracer to
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
Saalfe
l
d
Merge
b
ranch 'mast
e
r' int
o
s
p
ring-me
s
h2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
a
d
ded comment
s
and auto-finalize in Distor
t
io
n
C
o
r
rection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
Saalfel
d
adde
d
mpi
c
bg
.
version as
m
aven property,
commit
|
commitdiff
|
tree
2013-05-06
Steph
a
n Saalfeld
tr
a
c
k
m
ov
e
of
the imglib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saalfeld
Merge branch
'mas
t
er' in
t
o spring-m
e
sh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saalfeld
Me
r
ge branc
h
'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
St
e
phan S
a
alfeld
u
s
e array
l
ist w
h
ere
a
rraylists are returned
commit
|
commitdiff
|
tree
2013-01-16
Stephan
Saal
f
eld
adjust mpicbg spring
-
me
s
h2 which needs less
damping
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan
Saalfel
d
F
i
x
ed b
u
g in
Pa
t
ch
.
getFullCoordinateTran
s
form that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan Saalfeld
Changed fixedPat
c
hes/Tiles
i
nput
collection
t
o Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
alfeld
Pa
i
r
constructor
has to be
pu
b
lic
commit
|
commitdiff
|
tree
2013-01-10
Stephan
S
a
alfe
l
d
forgot to se
t
isAli
g
ned flag in elas
t
ic laye
r
alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saa
l
fel
d
elastic m
o
ntage
param must
b
e pu
b
lic
commit
|
commitdiff
|
tree
2013-01-07
St
e
phan Saa
l
fel
d
a
d
ded Patch
.
getFullCord
i
nateTransfo
r
m()
whi
c
h g
e
nerates
a
commit
|
commitdiff
|
tree
2013-01-07
St
e
phan
S
aalfeld
*
rem
o
ved
isAligned from Ab
s
tra
c
t Pa
r
am
class
commit
|
commitdiff
|
tree
2013-01-05
Stephan
Saalfeld
877: it i
s
legal for
l
ayerThing to be
n
ull
commit
|
commitdiff
|
tree
2012-12-21
Stephan
Sa
a
lf
e
ld
Corrected several
l
o
ng-standin
g
issues with
S
IFT-line
a
r and
commit
|
commitdiff
|
tree
2012-12-19
Ste
p
h
a
n S
a
alfeld
RegularizedLaye
r
Al
i
gnment go
t
m
o
r
e flex
i
b
le API met
h
od
s
and
commit
|
commitdiff
|
tree
2012-12-19
Stephan
S
a
alfeld
c
learing cache in layer alignment must be defa
u
lt true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
p
r
int optimize
r
re
s
ults and do not print
"mat
c
h
ing
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan
S
aalfeld
do n
o
t
r
emove empt
y
layers i
n
laye
r
al
i
gnmen
t
commit
|
commitdiff
|
tree
2012-11-07
Stephan
Saalfeld
f
ixed version n
u
mber of
m
picbg dependenc
y
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fix
e
d
m
erg
e
error: move
d
RobustNorma
l
i
zeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Ste
p
ha
n
Saalfeld
multi-
t
h
rea
d
ed Ro
b
ustNor
m
alizeLocalContrast m
a
in body
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saal
f
eld
R
e
moved Disp
l
ayCanva
s
.
setDrawingColor(int,i
n
t,boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan
Saalf
e
ld
Me
r
ge br
a
nc
h
'master'
o
f
s
s
h
://rep
o
.
or
.
c
z/srv/git/
t
ra
k
em2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
ad
d
e
d
e
x
pe
r
i
m
ental local contrast enhancer Rob
u
stNorma
l
izeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
S
tephan Saal
f
eld
removed obsolete ch
o
ice from
a
l
ig
n
la
y
er
s
dialog
commit
|
commitdiff
|
tree
2012-06-26
Step
h
an Saa
l
feld
s
plit el
a
stic monta
g
e
d
ialog
for block matching and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
Merge branch 'master' of ssh
:
//repo
.
or
.
cz/srv/g
i
t
/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfe
l
d
us
e
and do
n
ot ignore alpha in he
l
per method
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
use th
e
new sequen
t
ial
dialog
s
in "montage"
f
or a sele
c
t
i
on
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saa
l
feld
Merge bra
n
ch 'master
'
of s
s
h://repo
.
or
.
cz/
s
rv/gi
t
/
t
r
ake
m
2
commit
|
commitdiff
|
tree
2012-06-20
Step
h
an Saalfeld
f
i
xed range check in layer alignment
commit
|
commitdiff
|
tree
2012-06-14
Stepha
n
Saalfeld
fixed condit
i
o
n
c
hec
k
in Align
La
y
ers f
o
r re
g
ulariza
t
io
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
Merg
e
b
ranch 'mast
e
r' into
r
egular
i
zed-affine
commit
|
commitdiff
|
tree
2012-06-08
S
t
e
p
han Saalfeld
do not
consider disconnect
e
d tiles
commit
|
commitdiff
|
tree
2012-06-08
Stepha
n
Saal
f
eld
Merge
branch 'regulariz
e
d
-
a
ffine' of ssh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalfeld
pre
-
al
i
g
n
graphs and mat
c
h only overlapping
t
iles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Sa
a
lf
e
ld
pre-align
grap
h
s and match only
ove
r
l
a
p
p
i
ng tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
init
i
ali
z
e Tile mode
l
s
a
nd
n
o
t
o
nly pat
c
hes in al
i
gnGraphs
commit
|
commitdiff
|
tree
2012-06-08
S
te
p
han
Saal
f
eld
ch
a
nged alignGraphs
i
n
put c
o
lle
c
tio
n
s from Set to
I
t
erab
l
e
commit
|
commitdiff
|
tree
2012-06-08
S
tep
h
an
Saalf
e
l
d
make s
u
re that st
a
t
ic p
a
rameters do not
o
ve
r
ride eac
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saal
f
eld
remove spurious import
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
workaround Oracle ja
v
ac
ge
n
e
rics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan Sa
a
lfeld
multi-layer-mosaic uses
P
aram/P
a
ram
O
ptim
i
ze
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
mo
n
tage layers uses ParamOptimize
.
setup inst
e
ad of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an S
a
alfeld
do no
t
fi
x
a r
a
ndom tile if non
e
is fixe
d
commit
|
commitdiff
|
tree
2012-05-29
Stephan Sa
a
lfel
d
Condensed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
S
teph
a
n Saalfe
l
d
A
d
ded
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Stephan
S
a
a
lfel
d
Merge branch 'master' i
n
to regularized-affine
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Saalfeld
added *None* f
i
e
l
d
t
o layer range referenc
e
selection
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
s
p
l
i
t Align
.
Param
O
pt
i
mize dialogs in pieces th
a
t fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan S
a
a
lfeld
added GenericAff
i
neTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saalfeld
generalized AbstractAf
f
ineTile2D generic pa
r
ameter
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalfeld
t
r
a
c
k refactoring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan S
a
alfeld
a
dd
e
d regularized affine layer al
i
gnment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalf
e
ld
fixed createIma
g
e():
use prem
u
l
t
iplied raster
commit
|
commitdiff
|
tree
next