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forgot to set isAligned flag in elastic layer alignment parameter
2013-01-10
Step
h
a
n
S
aalfeld
forgot to set is
A
ligne
d
flag
in elastic layer
alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saa
l
feld
elastic montage param mus
t
be publ
i
c
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saal
f
eld
added Patch
.
ge
t
FullCordinate
T
ransform(
)
which gen
e
r
ates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan
S
aalfeld
* removed isAligned
f
rom Abstr
a
ct Param
c
lass
commit
|
commitdiff
|
tree
2013-01-05
S
tephan Saal
f
eld
877:
it is
l
e
g
a
l
f
o
r
layerThing to be
n
u
ll
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saalfel
d
Corrected
severa
l
long-st
a
ndin
g
issu
e
s with S
I
FT-
l
inear and
commit
|
commitdiff
|
tree
2012-12-19
S
tephan Saa
l
feld
Regularized
L
ayerAlignment got m
o
re fle
x
ible API method
s
and
commit
|
commitdiff
|
tree
2012-12-19
Ste
p
han Saal
f
eld
c
l
e
ar
i
ng cache in
l
ayer
a
lignment mu
s
t
b
e defaul
t
tr
u
e
commit
|
commitdiff
|
tree
2012-12-19
Step
h
an Saalfeld
pr
i
n
t
optimi
z
er results and do
not print "m
a
tching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalf
e
ld
do n
o
t
remove empty laye
r
s
i
n layer alignment
commit
|
commitdiff
|
tree
2012-11-07
Stepha
n
Saalfe
l
d
fixed version number of mp
i
cbg
d
epe
n
dency
commit
|
commitdiff
|
tree
2012-11-07
St
e
phan Saal
f
eld
fixed m
e
rge err
o
r
:
moved R
o
bustNormalizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Steph
a
n S
a
alf
e
ld
multi-threaded R
o
bustNormalizeLocalContrast
main b
o
dy
commit
|
commitdiff
|
tree
2012-09-01
S
t
ephan Saalfeld
Removed DisplayCa
n
vas
.
setDr
a
wingColor(int,int,b
o
o
l
e
an
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
S
teph
a
n S
a
alfeld
Merge branch
'master'
of s
s
h://repo
.
or
.
cz/
s
r
v
/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
S
t
ephan
S
aalfeld
adde
d
e
xper
i
mental local contras
t
en
h
a
ncer
Ro
b
ustNorm
a
lizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Ste
p
han Saalfeld
r
e
moved obso
l
et
e
choice from alig
n
layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Ste
p
han Saa
l
feld
split elastic montag
e
dialog for b
l
ock
m
atchi
n
g
and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
Merge branch 'master' of ssh://r
e
po
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
us
e
and do not ignore
a
lpha in h
e
lper m
e
thod
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
use the n
e
w sequen
t
ia
l
dialogs in
"
montage"
for a selecti
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
S
t
ephan
S
a
a
l
fe
l
d
Merge bran
c
h 'm
a
ster'
of ssh://repo
.
or
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Sa
a
lfe
l
d
f
ix
e
d
range
check in laye
r
a
lignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfe
l
d
fixe
d
conditio
n
c
he
c
k in Align La
y
ers for regu
l
ariz
a
tion
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
Mer
g
e branch 'master'
into regu
l
a
r
ized-
a
f
fine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
ld
do
not consid
e
r di
s
con
n
ected
t
iles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
e
ld
M
erge
b
r
anch '
r
e
g
u
l
a
r
ized-
a
ffine'
of
s
sh:/
/
r
e
p
o
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
eld
pre-align graph
s
and match
only overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-al
i
gn gra
p
hs and mat
c
h only overlapping t
i
les
commit
|
commitdiff
|
tree
2012-06-08
Stepha
n
Saalfeld
in
i
tia
l
ize Tile models an
d
no
t
only pat
c
h
e
s in alignGraph
s
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
cha
n
ged alignGraphs inpu
t
collections from Set to Iterable
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
make sure that static para
m
e
ters do not ov
e
rride eac
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalfeld
remove s
p
uri
o
us
i
m
port
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
workaround Oracle javac generics issue
commit
|
commitdiff
|
tree
2012-06-05
Steph
a
n Sa
a
lfeld
multi-lay
e
r-mosai
c
us
e
s
Param/ParamOp
t
imize
.
setup(St
r
ing
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Sa
a
lfeld
mon
t
age layers uses Par
a
mOpt
i
m
i
ze
.
se
t
up instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan S
a
alfeld
do n
o
t fix a random tile if
n
one is f
i
x
ed
commit
|
commitdiff
|
tree
2012-05-29
Ste
p
han
S
aalfeld
C
ondens
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan S
a
alfeld
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
Merg
e
branch 'master' into re
g
ul
a
rized-
a
ffi
n
e
commit
|
commitdiff
|
tree
2012-05-21
Stephan
Saalfeld
a
d
d
e
d *None*
field to layer range r
e
ference se
l
ection
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfel
d
sp
l
it Align
.
Pa
r
amOpti
m
ize dialogs
i
n pi
e
ce
s
tha
t
fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan
S
aalfel
d
add
e
d G
e
nericAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Sa
a
lfeld
gen
e
ralized AbstractAffineT
i
le2D ge
n
eric parameter
commit
|
commitdiff
|
tree
2012-05-15
Stepha
n
Saalf
e
ld
track refac
t
or
i
ng in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Step
h
a
n
Saalfeld
added regularized
af
f
ine layer alignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan S
a
al
f
eld
fixed createImage
(
): use premulti
p
l
ied rast
e
r
commit
|
commitdiff
|
tree
2012-03-27
S
t
epha
n
S
a
alfeld
do not pr
i
nt the mipma
p
scale
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
h
an
S
aalf
e
ld
for
n
ow,
d
o
no
t
u
s
e
pre-mu
l
tip
l
ied
a
lp
h
a since it do
e
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fixed wrong paint
i
ng of
P
atches when using a do
w
nsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saalfeld
DownsamplerM
i
pMaps
n
ow consistently
uses comb
i
n
e
d
d
ownsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n Saalfeld
fi
x
e
d
Downsam
p
lerMipM
a
ps blending merged alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan S
a
alfeld
Downsampler tes
t
still shows it being sig
n
if
i
cantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fixed
D
ownsampler: range check in byte conve
r
sion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an
S
aal
f
eld
Merge branch 'integra
l
'
of
s
sh:
/
/
r
ep
o
.
or
.
cz/srv/
g
it
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
a
d
ded
missing p
a
ckage
to Fak
e
file
commit
|
commitdiff
|
tree
2012-03-08
St
e
p
h
an Saalfeld
Merg
e
branch 'master' o
f
ss
h
://repo
.
or
.
cz/
s
rv/git/t
r
akem2
commit
|
commitdiff
|
tree
2012-03-08
Step
h
an Saalfeld
fix
l
o
cal scale estimate
commit
|
commitdiff
|
tree
2012-03-07
Step
h
an
S
aa
l
feld
a
d
ded getLocal
S
cale(
x
,y) metho
d
t
o
Pa
t
ch
commit
|
commitdiff
|
tree
2012-03-07
Stephan S
a
alfeld
p
atch does not propagate NonI
n
v
e
rtibleModelE
x
ception
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan
Saalfe
l
d
Merge branch '
m
as
t
er' of ssh://repo
.
or
.
cz/sr
v
/g
i
t/trakem
2
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
han Saalfeld
added method
s
to f
e
t
c
h
the closest tr
i
angle
o
f a tra
n
sform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
in th
e
mid
d
le o
f
.
.
.
amend with f
i
n
a
l
commit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saa
l
fe
l
d
demonstrate byte conv
e
rsion in
a
n extra loop
to
b
e
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
St
e
phan S
a
alfeld
Merge
bra
n
ch
'i
n
teg
r
al' of
ssh://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
S
t
ephan
S
a
a
lfel
d
Downsampler fini
s
hed
.
I
hav
e
teste
d
several variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stepha
n
Saalfeld
experi
m
antal com
m
it:
commit
|
commitdiff
|
tree
2012-02-23
S
t
ephan S
a
alfel
d
Merge
branch 'integ
r
al' of ssh://repo
.
or
.
cz/sr
v
/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalfeld
D
o
w
n
sampler
w
i
th alpha-chan
n
els rendering int
o
byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfe
l
d
Merg
e
branch
'
master' of s
s
h://
r
epo
.
or
.
c
z
/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2012-02-22
Stepha
n
S
a
alf
e
ld
se
t
interpolation mode
t
o actu
a
lly interpolate ma
s
k
s
commit
|
commitdiff
|
tree
2012-01-06
Stephan Saalfeld
Fixe
d
bug 392,
the property n
_
mipmaps_threads mu
s
t
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saa
l
f
el
d
E
lasti
c
Montage
:
do not
visuali
z
e
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalf
e
ld
Merge bra
n
ch 'm
a
ster' of ssh://repo
.
or
.
cz/srv/gi
t
/
t
rakem2
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalf
e
ld
AlignT
a
sk
:
really skip layer
s
annota
t
i
o
n-with
linked
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Steph
a
n
S
a
alfeld
El
a
sticMontage: res
p
ect fixed Patches (
f
rom
s
e
lec
t
ion
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
r
enam
e
d shading l
o
cal parameter
commit
|
commitdiff
|
tree
2011-11-07
Stephan S
a
alfel
d
A
t
tempt to fix bug 380
.
Pl
e
ase check if the behav
i
o
r
commit
|
commitdiff
|
tree
2011-11-07
Ste
p
han Saalfeld
add
e
d com
m
ents and fixe
d
typo
commit
|
commitdiff
|
tree
2011-10-22
Stephan Saalfeld
Elasti
c
Alignment/Montage:
commit
|
commitdiff
|
tree
2011-10-19
S
t
ephan Saal
f
eld
Merg
e
branch 'ma
s
ter' of ssh://repo
.
or
.
cz/sr
v
/git/trak
e
m2
commit
|
commitdiff
|
tree
2011-10-12
S
te
p
han Saalfeld
Me
r
ge
branch 'm
a
st
e
r' of ssh://repo
.
or
.
cz/srv/git/trakem
2
commit
|
commitdiff
|
tree
2011-10-10
Stepha
n
Saa
l
f
eld
Merge branch
'
m
aster'
of
s
s
h://repo
.
or
.
cz
/
srv/git/t
r
ake
m
2
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saa
l
feld
Alig
n
uses U
t
ils
.
log instead of IJ
.
lo
g
commit
|
commitdiff
|
tree
2011-10-10
Steph
a
n Saal
f
eld
Distorti
o
n c
o
rrection
uses Utils
.
lo
g
instead of IJ
.
lo
g
commit
|
commitdiff
|
tree
2011-10-10
S
t
ephan
Sa
a
lfe
l
d
log time
and da
t
e pear each log p
r
int
commit
|
commitdiff
|
tree
2011-10-10
Stephan S
a
alfeld
added
experim
e
nt
a
l
1
6
bit unsigned tiles exp
o
r
ter
commit
|
commitdiff
|
tree
2011-10-10
Stephan Sa
a
lf
e
l
d
TransformMe
s
h
Mapp
i
n
g
W
i
thMasks got methods and rend
e
ring
commit
|
commitdiff
|
tree
2011-10-01
Stephan Sa
a
lfeld
m
a
ke IJ
.
log
t
o Utils
.
log in ElasticLayer
A
l
ign
m
ent
commit
|
commitdiff
|
tree
2011-09-29
Stephan Sa
a
lfeld
ad
d
e
d
block
r
a
dius as parameter to
commit
|
commitdiff
|
tree
2011-09-28
S
t
ephan
S
aalfel
d
ElasticLayerAli
g
n
m
ent visualizati
o
n
b
a
ck to
f
alse
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saalf
e
ld
springmesh damp bac
k
to normal, n
o
t much
commit
|
commitdiff
|
tree
2011-09-27
Stephan Sa
a
lfel
d
Me
r
g
e
branch
'
m
aster' of ssh://repo
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2011-09-27
Stepha
n
Saalfel
d
a
d
d
ed
local smoothness filter
to elastic
l
ayer
commit
|
commitdiff
|
tree
2011-09-27
Step
h
a
n
Saalfeld
added a
me
t
hod
t
o create an A
b
s
t
ractM
o
del using an
commit
|
commitdiff
|
tree
2011-09-25
Steph
a
n
S
aalfeld
fix
e
d wro
n
g
n
a
m
ing
s
from las
t
comm
i
t
commit
|
commitdiff
|
tree
2011-09-24
Stephan Saalfeld
a
d
ded
transfer mod
e
s for Coor
d
ina
t
eTransforms,
commit
|
commitdiff
|
tree
2011-09-24
Steph
a
n
Saa
l
feld
a
d
ded a method to
pre-append a Coor
d
inateTransform
commit
|
commitdiff
|
tree
2011-09-15
Stepha
n
Saa
l
feld
remove clutter
commit
|
commitdiff
|
tree
2011-09-15
Stephan Saalfe
l
d
Merge b
r
anch 'master' into elastic-align
commit
|
commitdiff
|
tree
next