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second try to make reproducible build pom-trakem2-1.1.1
2014-12-17
St
e
phan Saalfeld
s
e
cond try to
m
ake repr
o
d
u
c
ible bu
i
ld pom-trakem2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Stephan
Saal
f
e
ld
Merge bran
c
h
'
i
nt
e
n
s
i
t
y
-tran
s
form'
commit
|
commitdiff
|
tree
2014-12-13
Ste
p
han Saalfeld
bump to
next develo
p
m
e
nt cycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalf
e
ld
reproducible build pom-t
r
akem2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Ste
p
han Saalfeld
Merge remote-tracking
b
ranch 'origin/master'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
bump to n
e
w
development cycle
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
Saalfeld
r
e
prod
u
c
ible build pom-tr
a
kem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan S
a
alfeld
Merge branch 'master'
o
f
g
i
thub
.
com:trakem2
/
TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
S
tep
h
an Saalfeld
added Val
u
e
T
oNoise filter whi
c
h fills a given intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-07
Stepha
n
Saalfeld
Merge branch 'master
'
in
t
o
c
o
ordXfmFix
commit
|
commitdiff
|
tree
2014-11-07
Stephan S
a
al
f
eld
Merge r
e
mote-tra
c
k
ing
branch
'
origin/inte
n
sity-t
r
ansf
o
rm'
commit
|
commitdiff
|
tree
2014-10-04
S
tephan
S
a
a
l
f
e
ld
added
R
obu
s
tNormali
z
edLocalCon
t
rastFilter, fast a
n
d
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
St
e
pha
n
S
aalfeld
Chan
g
ed def
a
ult
b
lock radius
i
n Normal
i
zeLoca
l
Contra
s
t
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
tephan S
a
a
lfeld
auto-r
e
moved some training w
h
it
e
spaces
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an Sa
a
l
f
eld
added run m
e
th
o
d
t
hat does not need
a w
o
rker for easie
r
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saalfeld
aut
o
-r
e
mov
e
d
some t
r
a
i
l
ing whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an Saalfeld
parallelized in
t
e
r
section tests for pairO
v
e
r
lappingTiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfel
d
au
t
o
-
finalize
constant p
r
op
e
rti
e
s and p
a
rameters i
n
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan S
a
a
l
f
e
ld
thread
s
afe Utils
.
ensure(F
i
le)
commit
|
commitdiff
|
tree
2014-06-06
Stephan
Saalfeld
f
ixed
b
ug in generation of
al
p
ha
m
asks
commit
|
commitdiff
|
tree
2014-06-05
S
tephan Saal
f
e
ld
external
i
zed Distor
t
ionCo
r
r
ection
.
run to enable
c
alling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
Ecli
p
se autu
-
cosmet
i
cs i
n
DistortionCorrecti
o
n
commit
|
commitdiff
|
tree
2014-05-19
S
tephan Saalfeld
Merge branch
'mast
e
r' into intensi
t
y-tran
s
for
m
commit
|
commitdiff
|
tree
2014-05-19
Step
h
an Saalfeld
u
se st
a
ndard wr
i
te
r
for
coo
r
dinatetra
n
sforms
commit
|
commitdiff
|
tree
2013-10-10
Ste
p
han Saa
l
feld
rep
l
ac
e
d pl
u
gins
.
config wit
h
the F
i
ji
v
ersion
commit
|
commitdiff
|
tree
2013-09-20
Stephan
Saalfel
d
Merge
branch 'master'
of ssh
:
//repo
.
or
.
cz/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Merge branch 'ma
s
ter' of
ss
h
://repo
.
or
.
cz/s
r
v/
g
it
/
tr
a
kem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan
Sa
a
lf
e
ld
Parall
e
l
p
a
ir
O
verla
p
pingTiles did not
w
o
rk and r
e
p
o
r
t
ed
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
St
e
phan Saalf
e
ld
Merge branch
'
master' of ssh://repo
.
or
.
cz/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
S
t
ephan Saalfeld
re-
a
dded legacy optimizer for spr
i
ng m
e
shes, this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Step
h
an Saal
f
eld
T2-N
I
T
/
pom
.
xml
can
inherit version number
f
r
o
m
parent
commit
|
commitdiff
|
tree
2013-08-14
S
t
ephan Saalfeld
added missin
g
d
ependenc
i
e
s
t
o java
3
d
c
ore-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
St
e
phan S
a
al
f
eld
set par
e
nt po
m
of po
m
-trake
m
2 to pom-fiji
.
2
.
0
.
0
-
SNAPSHO
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge branch 'spri
n
g-mesh2'
o
f ssh://repo
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge branch 'm
a
ster
'
int
o
spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saal
f
e
l
d
raised m
p
icbg dependency version to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Saal
f
eld
raised
d
e
p
endency to Si
m
ple_
N
eurite_Tracer
t
o
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
M
erge branch 'mas
t
er' into
s
pri
n
g-me
s
h2
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
Saalfeld
added comments a
n
d aut
o
-finalize in
D
istortionCorrec
t
i
on/NL
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added mpicbg
.
versio
n
as maven property,
commit
|
commitdiff
|
tree
2013-05-06
St
e
pha
n
Saa
l
feld
track
move
of th
e
imglib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
St
e
phan Saa
l
feld
Merge branch 'master' in
t
o spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stepha
n
S
a
a
lfel
d
M
erge branch 'm
a
ster
'
into s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan
Saalfeld
use arra
y
list where arraylists
a
re return
e
d
commit
|
commitdiff
|
tree
2013-01-16
Ste
p
han Saalfeld
adj
u
st mpicbg spring-mesh2 which needs less damp
i
ng
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fi
x
ed
bug in P
a
tch
.
get
F
u
llCoordinat
e
Tr
a
ns
f
orm
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han
S
aal
f
e
ld
Changed fixedPatche
s
/Tiles
i
nput collection
to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
S
tephan
Saalfeld
Pair constructor has t
o
be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saalfeld
forgot to set
i
s
A
l
igned flag in ela
s
t
i
c layer align
m
ent
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfeld
ela
s
tic montage
p
aram must be public
commit
|
commitdiff
|
tree
2013-01-07
S
t
ephan
Saalfe
l
d
added Patch
.
ge
t
FullCordinateTrans
f
orm
(
)
w
hich g
e
ner
a
tes a
commit
|
commitdiff
|
tree
2013-01-07
Stephan S
a
a
lfeld
* re
m
ov
e
d
i
s
Aligned fr
o
m Abstra
c
t Param
c
l
a
ss
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfeld
877: it is legal for
l
a
y
erThing to be null
commit
|
commitdiff
|
tree
2012-12-21
St
e
phan Saalfeld
Corrected several long-standi
n
g is
s
u
e
s
w
i
t
h SIFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
RegularizedLayerAl
i
gnment go
t
more
f
lexible API methods and
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n S
a
a
l
feld
clearing
c
a
che in layer
al
i
gn
m
ent
mus
t
b
e
defa
u
lt true
commit
|
commitdiff
|
tree
2012-12-19
Stepha
n
S
aalfel
d
print opt
i
mi
z
er results and do not print "
m
atchi
n
g
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
tep
h
an Saalfeld
do not rem
o
ve empty layers in layer alig
n
ment
commit
|
commitdiff
|
tree
2012-11-07
S
t
ephan Saalfeld
fixed version number of mpicbg
d
epen
d
e
n
c
y
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fix
e
d merge erro
r
: moved
R
obus
t
NormalizeL
o
ca
l
C
o
ntrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Sa
a
l
f
eld
multi-th
r
eaded
R
obustNor
m
alizeLo
c
alContrast main b
o
dy
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfeld
Re
m
o
v
ed D
i
splayCa
n
vas
.
setDrawing
C
olor(
i
nt,int,b
o
olean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfe
l
d
Merg
e
branch 'master'
o
f
ssh
:
//
r
epo
.
or
.
c
z/s
r
v/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
adde
d
exp
e
rimental
local contrast enh
a
ncer Robu
s
tNormalizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
St
e
phan Saal
f
e
ld
re
m
oved
o
b
s
olete choice from
align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saa
l
feld
split elastic montage dialo
g
for
b
l
ock
m
a
tching and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan
Saalfeld
Merge bran
c
h 'master' of ssh://repo
.
or
.
cz/sr
v
/git
/
trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfe
l
d
u
s
e and do not
ign
o
r
e alpha in helper met
h
od
commit
|
commitdiff
|
tree
2012-06-21
Stephan Sa
a
lfeld
use the new
s
equential dialogs in "mont
a
ge" for a s
e
lect
i
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Mer
g
e
b
ranch
'
master' of
ssh:
/
/re
p
o
.
or
.
c
z/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Sa
a
lfeld
fix
e
d r
a
n
ge check in
layer alignme
n
t
commit
|
commitdiff
|
tree
2012-06-14
St
e
pha
n
S
a
alfeld
f
ixed cond
i
tion check in
A
l
i
gn Layers
for regularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
St
e
p
h
a
n S
a
al
f
eld
Merge
b
ranch 'm
a
ster' int
o
regularized-affine
commit
|
commitdiff
|
tree
2012-06-08
S
teph
a
n
Saalfeld
d
o
n
ot
consi
d
er
disconnected ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saalfeld
Merge
branc
h
'regularized-affine' of ssh://repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Sa
a
lfeld
p
re-align graphs and
m
atch only
o
ver
l
apping tiles
commit
|
commitdiff
|
tree
2012-06-08
St
e
p
han
S
aalfeld
pre-
a
lign
grap
h
s and ma
t
ch only
o
v
e
rlap
p
ing tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
initialize
Tile
m
od
e
l
s
and
not only
p
a
t
c
hes
i
n alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalfeld
changed
a
lignG
r
aphs input colle
c
tions from Set t
o
Ite
r
able
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
han Saalf
e
ld
make sure tha
t
static parameter
s
do
no
t
over
r
i
d
e each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Sa
a
lfeld
remov
e
spuri
o
us imp
o
rt
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
worka
r
ou
n
d Oracle javac generi
c
s issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
aalf
e
ld
m
u
l
t
i-
l
a
y
er-mo
s
aic u
s
es Param
/
ParamOptimize
.
setup(Stri
n
g
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Steph
a
n Saalfeld
montage layers uses P
a
ram
O
pt
i
m
ize
.
se
t
up instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan Saal
f
eld
do
n
o
t f
i
x a random tile
if
n
one is fixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
Condens
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stepha
n
Saalfe
l
d
Ad
d
ed
.
ma
i
lmap
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saal
f
eld
M
erge branch 'maste
r
' into regularized-affine
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saalfeld
ad
d
ed
*
No
n
e* field to layer ran
g
e
re
f
erence selection
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han Saalfeld
s
p
lit Al
i
g
n
.
ParamOptimize dial
o
gs
in piec
e
s t
h
at fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfel
d
adde
d
GenericAffine
T
ile2D
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saalfeld
generalized
A
bstrac
t
A
f
fineTi
l
e2D ge
n
eric parameter
commit
|
commitdiff
|
tree
2012-05-15
Stephan S
a
alfeld
tr
a
ck
refactoring in
mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfeld
add
e
d regulari
z
ed
a
ffine
layer
alignment,
commit
|
commitdiff
|
tree
2012-03-28
Ste
p
han Sa
a
lfeld
fix
e
d createImage(): use premultipl
i
e
d
raster
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n Sa
a
lfel
d
do not print
t
he mipmap
s
cale
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
lfeld
for now, do not
use
pre-mult
i
plied alpha
s
i
n
ce
it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
F
i
xe
d
w
ro
n
g
paintin
g
of Patches when usi
n
g a dow
n
sampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
a
n Saal
f
eld
Downs
a
mplerMipMaps now consiste
n
tly u
s
e
s
c
ombined downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saa
l
feld
fixed DownsamplerMipMaps blending mer
g
ed
a
l
p
ha into
.
.
.
commit
|
commitdiff
|
tree
next