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use standard writer for coordinatetransforms
2014-05-19
S
tep
h
a
n
Saa
l
feld
u
se standard w
r
iter
for coordinatetr
a
nsfor
m
s
commit
|
commitdiff
|
tree
2013-10-10
Ste
p
han
Saalf
e
ld
rep
l
a
ced plugins
.
config
with the Fiji vers
i
on
commit
|
commitdiff
|
tree
2013-09-20
Step
h
an
S
aalfeld
M
e
r
ge b
r
anch
'
mas
t
er' of ssh:
/
/repo
.
or
.
cz/srv/
g
i
t
/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Steph
a
n
S
aalfel
d
Mer
g
e branch 'master
'
o
f
ssh:/
/
repo
.
o
r
.
cz/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Parallel pa
i
r
Overla
p
pingTi
l
es did not work and reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
te
p
h
an
S
aa
l
feld
Merge branch 'master' of ssh://repo
.
or
.
cz/srv/g
i
t
/
trakem2
commit
|
commitdiff
|
tree
2013-09-16
Step
h
an
Saalfeld
re-add
e
d leg
a
cy optimi
z
e
r for spri
n
g meshes
,
t
his would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
tephan Saa
l
fe
l
d
T2-NIT/
p
o
m
.
xml can inherit
v
ersion
number from par
e
nt
commit
|
commitdiff
|
tree
2013-08-14
Stephan
S
aalfeld
added missing depende
n
ci
e
s to java3d
core-u
t
ils
a
n
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfel
d
s
et paren
t
po
m
of
pom-trakem2
t
o pom-fiji
.
2
.
0
.
0
-
SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
S
tep
h
an Saalf
e
l
d
Merge bra
n
ch 'spring-mesh2' o
f
ssh://repo
.
or
.
c
z
/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
St
e
p
h
an Saalfeld
Merge branch 'mas
t
e
r' into sprin
g
-
m
esh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalfeld
raised mpicb
g
depe
n
dency version t
o
0
.
6
.
1
-
S
N
APSHOT
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Saal
f
eld
r
aised dependency to Simple_Neurite_Tracer to
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalfeld
Merge br
a
nch 'master' int
o
spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfe
l
d
added c
o
mments and auto
-
finalize in Distorti
o
nC
o
rrection/N
L
T
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
S
a
alfe
l
d
a
d
ded mpic
b
g
.
version a
s
maven property,
commit
|
commitdiff
|
tree
2013-05-06
Steph
a
n
Saalfe
l
d
track move of the imgl
i
b
1
dependen
c
y
commit
|
commitdiff
|
tree
2013-04-22
Stephan Sa
a
lfeld
Merge b
r
anch 'mas
t
e
r
'
into s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stepha
n
Saalf
e
ld
Merge bran
c
h
'
mast
e
r' int
o
spri
n
g-me
s
h2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saal
f
eld
use arraylist w
h
ere arra
y
lis
t
s are
retu
r
ned
commit
|
commitdiff
|
tree
2013-01-16
Stephan Saal
f
el
d
adjust
m
picbg spr
i
ng-mesh2
whi
c
h needs less damping
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
alf
e
ld
Fixed bug in
P
at
c
h
.
getFullCoor
d
i
n
ateTran
s
f
o
rm that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han
Saalfeld
Changed fixedP
a
t
ches/T
i
les input
c
o
l
lection to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
Saa
l
f
el
d
Pair constructor has to be public
commit
|
commitdiff
|
tree
2013-01-10
Steph
a
n Saalfeld
forgot to set
i
s
A
li
g
n
e
d
flag in
elastic layer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfeld
e
l
a
stic
montage param must be public
commit
|
commitdiff
|
tree
2013-01-07
Stepha
n
Saalfeld
ad
d
ed Pat
c
h
.
getFullCordinat
e
Transform() whic
h
generates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan
S
aalfeld
* removed isAl
i
g
n
ed from Abstra
c
t Par
a
m cl
a
s
s
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfel
d
877: it is le
g
al for l
a
yerThing to be
n
ull
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saa
l
f
eld
C
orrect
e
d sever
a
l long-s
t
anding issues with SIFT-
l
inea
r
and
commit
|
commitdiff
|
tree
2012-12-19
S
te
p
han Saalfeld
Regulariz
e
dLayerAl
i
gnment
go
t
m
ore flexible
A
P
I
me
t
h
o
ds an
d
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
clearing
cache
in laye
r
alig
n
ment mus
t
be default true
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
a
lfeld
print
optim
i
z
e
r
results and
do
n
ot print "match
i
n
g
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n
Saa
l
fe
l
d
do
n
ot remove emp
t
y layers
i
n
laye
r
a
lignme
n
t
commit
|
commitdiff
|
tree
2012-11-07
Stephan
S
a
alfeld
fixed version num
b
e
r
of
m
picbg dependency
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saa
l
f
eld
fixed
mer
g
e error:
m
oved Rob
u
stNormal
i
zeLocalContras
t
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Step
h
an Saa
l
feld
multi-th
r
ea
d
e
d
R
o
bu
s
tNor
m
alizeLocal
C
ont
r
a
s
t mai
n
b
o
dy
commit
|
commitdiff
|
tree
2012-09-01
St
e
phan
S
a
alf
e
l
d
Removed DisplayCanvas
.
setDrawingColor(int,int,bo
o
lean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
Merge branch
'
master' of s
s
h://repo
.
or
.
cz/srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-08-31
S
t
ephan Saalfeld
added experime
n
t
a
l loca
l
contr
a
st e
n
hance
r
RobustNorma
l
izeL
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan Saalfeld
rem
o
ved obsole
t
e choice f
r
o
m
align layers dia
l
og
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
split elasti
c
m
o
ntage
d
ia
l
o
g
for
b
lock matchi
n
g
and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
Merge branch 'm
a
s
t
er' of s
s
h
://repo
.
or
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
S
tephan Saalfel
d
u
se and do
n
o
t
ig
n
ore alph
a
in helper me
t
hod
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
us
e
the new s
e
quential dialogs
i
n
"m
o
ntage" f
o
r a s
e
lection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Merge bra
n
ch 'master'
o
f ss
h
://repo
.
or
.
c
z
/srv/git/
t
rakem
2
commit
|
commitdiff
|
tree
2012-06-20
S
t
e
phan Saalfeld
fixed
range chec
k
i
n
l
ayer alig
n
ment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fixed conditi
o
n
check in
A
l
i
gn Laye
r
s for
r
egularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Steph
a
n Sa
a
l
feld
Merge bra
n
ch 'master' into reg
u
l
a
riz
e
d-affin
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do not c
o
nsid
e
r disconnected ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
Merge branch
'
regularized-a
f
fine' of ssh://rep
o
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-align gra
p
hs and
m
atch only over
l
apping tiles
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
han
Saalfeld
pre-align g
r
aphs and ma
t
ch o
n
ly overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
S
te
p
han Saalf
e
ld
initialize
Tile models and not only patche
s
i
n alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
changed
a
l
i
gnGr
a
phs input collect
i
ons fro
m
Set to It
e
r
a
b
le
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfe
l
d
mak
e
sur
e
that static
parameters do not
o
verride each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan Sa
a
lfeld
remove spurio
u
s im
p
ort
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an Saalfeld
workaro
u
nd Oracle javac generi
c
s issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
multi
-
layer-mosaic
uses Param/ParamOptimize
.
s
et
u
p(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
p
han Sa
a
l
feld
montag
e
laye
r
s uses ParamOptimiz
e
.
setu
p
instead
o
f
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfel
d
do
n
o
t fix a random tile if none is fixed
commit
|
commitdiff
|
tree
2012-05-29
Stepha
n
Saalfeld
Condensed
.
mailm
a
p
commit
|
commitdiff
|
tree
2012-05-29
Ste
p
han Saalf
e
ld
Added
.
m
ai
l
map
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
h
a
n Saalfeld
M
erge branch '
m
aster' into r
e
g
u
larized-aff
i
ne
commit
|
commitdiff
|
tree
2012-05-21
Stephan S
a
alfeld
added *None*
f
i
el
d
to laye
r
rang
e
reference selection
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
split A
l
ign
.
P
a
ramOptimize dialogs
in p
i
eces that f
i
t
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
p
han Saalfeld
adde
d
Gene
r
icAff
i
neTi
l
e2D
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Sa
a
lfeld
generali
z
ed Abst
r
actAffine
T
ile2D generic para
m
eter
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalf
e
ld
track re
f
actoring in mp
i
cbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan
S
aalfel
d
added regularize
d
a
ffine layer al
i
gnment,
commit
|
commitdiff
|
tree
2012-03-28
S
tephan S
a
alfeld
fixed
c
reateImage(): use
p
remultip
l
i
ed
raster
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saalfeld
do n
o
t pr
i
nt the mipmap
s
c
a
le
commit
|
commitdiff
|
tree
2012-03-27
St
e
p
h
an Saalfeld
for now, d
o
not us
e
pre-m
u
ltipl
i
ed alpha since
i
t do
e
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tephan Saal
f
eld
Fi
x
ed wron
g
p
a
inting of P
a
tches when using a
d
ownsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
DownsamplerMipMaps now c
o
nsistently us
e
s
combined down
s
ampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
l
f
eld
fixed DownsamplerMipMaps bl
e
nding mer
g
ed alp
h
a i
n
to
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an
Sa
a
lfeld
Dow
n
s
a
mp
l
er test still shows it being
sig
n
if
i
cantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan S
a
alfeld
F
i
xed Downsample
r
:
r
an
g
e c
h
eck in byte con
v
ersion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalf
e
l
d
Merge branch
'integ
r
al
'
of
ssh:/
/
repo
.
or
.
cz/s
r
v/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Ste
p
h
a
n
Saalfeld
a
dded mis
s
ing package t
o
F
a
kefile
commit
|
commitdiff
|
tree
2012-03-08
S
tephan S
a
alf
e
ld
Merge
br
a
nch 'mast
e
r' of ssh://re
p
o
.
or
.
cz/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saa
l
feld
fix local s
c
ale estimate
commit
|
commitdiff
|
tree
2012-03-07
S
tephan S
a
alfeld
added getLocal
S
cale(x,y) method to P
a
tch
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan Saalfeld
patch d
o
es not
p
r
o
pagate Non
I
nvertibl
e
M
o
delExc
e
ption
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan
S
aa
l
feld
Merge bra
n
ch
'
maste
r
'
of ss
h
://repo
.
o
r
.
cz/srv/gi
t
/
t
rakem2
commit
|
commitdiff
|
tree
2012-03-07
S
t
epha
n
Saalfel
d
added methods to fetch the closest
t
rian
g
le of a
t
r
ansfor
m
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stepha
n
S
a
alf
e
ld
in the middle of
.
.
.
a
mend wit
h
f
inal comm
i
t
commit
|
commitdiff
|
tree
2012-02-27
Ste
p
han Saal
f
e
l
d
demonstrate by
t
e conversion in an extra
loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Mer
g
e bra
n
ch 'in
t
egral' of
s
sh://repo
.
or
.
c
z/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Downs
a
mp
l
er finished
.
I have tested several
variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
St
e
pha
n
Saalf
e
ld
experi
m
ant
a
l commit:
commit
|
commitdiff
|
tree
2012-02-23
S
t
ephan S
a
alfeld
M
erge bra
n
ch 'integral
'
of ssh:/
/
repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Steph
a
n
Saalf
e
ld
Downsampler with
a
lpha-cha
n
nels rendering into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
St
e
ph
a
n Saalfeld
Merg
e
branch '
m
aste
r
' of ssh://
r
epo
.
or
.
cz
/
srv/git
/
t
rakem2
commit
|
commitdiff
|
tree
2012-02-22
Ste
p
han Saalfeld
set interpolat
i
on mo
d
e
t
o actually interpolat
e
masks
commit
|
commitdiff
|
tree
2011-10-01
Step
h
an Saalfeld
make IJ
.
log
t
o
Utils
.
log
in Elast
i
cLaye
r
Al
i
gn
m
ent
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use Mov
i
ngL
e
astSquaresTransform2
i
n ElasticLa
y
e
r
Alignment
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use M
o
vi
n
g
L
eastSquaresTransform2
in ElasticMonta
g
e
commit
|
commitdiff
|
tree
2011-08-10
Ste
p
han
S
aalfeld
u
se MovingLeastSquaresTransform2
f
or warp
i
n
g in multi
.
.
.
commit
|
commitdiff
|
tree
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