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use standard writer for coordinatetransforms
2011-08-10
Stephan Saalfeld
use Movi
n
gLeastSquaresTr
a
nsfo
r
m2 in NonLinea
r
TransformMode
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfe
l
d
Added MovingLeastSqu
a
resTransform2
e
xtending
commit
|
commitdiff
|
tree
2011-08-07
Step
h
an Saalfeld
E
lasticLayerAlignment: Whe
n
transf
e
rring layer transf
o
r
m
atio
.
.
.
commit
|
commitdiff
|
tree
2011-08-05
S
t
e
p
h
an Saalf
e
ld
f
lush cache between lay
e
r
ex
p
orts (the cache is
o
th
e
rwise
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
Steph
a
n Saalfeld
fr
e
e memory before running memory demanding task
s
i
n
.
.
.
commit
|
commitdiff
|
tree
2011-08-03
St
e
phan Sa
a
lfeld
f
ix
e
d bug in linearL
a
yerAl
i
gnment, calculate
a
nd ap
p
ly
.
.
.
commit
|
commitdiff
|
tree
2011-08-02
Stephan
S
aalfeld
flu
s
h i
m
age
cache memory b
e
for
e
doi
n
g a montage
commit
|
commitdiff
|
tree
2011-06-29
Ste
p
ha
n
S
aalfe
l
d
E
l
asticM
o
n
tage:
commit
|
commitdiff
|
tree
2011-06-29
Ste
p
han Saalfeld
Merge
b
ranch 'master' into elastic-a
l
i
gn
commit
|
commitdiff
|
tree
2011-06-28
Ste
p
ha
n
Sa
a
lfeld
Merge branch
'
maste
r
' in
t
o e
l
astic-a
l
ign
commit
|
commitdiff
|
tree
2011-06-28
S
t
ephan
Saalfeld
Added `
s
eems-to-work' elastic montaging
.
Missing
p
a
rts a
r
e
commit
|
commitdiff
|
tree
2011-06-28
Stephan Saalfeld
* mad
e
Patc
h
.
PatchImage a static
class (it has no references
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Stephan Saalf
e
l
d
a
d
ded Pair to
Abstr
a
ct
commit
|
commitdiff
|
tree
2011-06-23
Step
h
an S
a
a
lfeld
Align
.
java: moved twice implemented Model
fittin
g
a
nd
.
.
.
commit
|
commitdiff
|
tree
2011-06-23
S
t
ep
h
a
n Saalfeld
Elas
t
ic
A
lign uses the local siftParam for identif
y
ing
commit
|
commitdiff
|
tree
2011-06-23
St
e
phan Saalfeld
TransformM
e
shMappingWi
t
hMa
s
k
rounds tria
n
gel b
o
unding
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Steph
a
n
Saalfeld
a
t
t
empt to ge
t
s
ha
r
ed function for layer alignment
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Stephan Saalfeld
titled mon
t
a
g
e
dialog `Montage' consistentl
y
with the
.
.
.
commit
|
commitdiff
|
tree
2011-06-21
Steph
a
n Saalfeld
Fixed Thread interrup
t
io
n
in A
l
ign
.
connectTil
e
Pairs
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
Stephan
Saalf
e
ld
`Montage all i
m
ag
e
s in
this l
a
yer':
commit
|
commitdiff
|
tree
2011-06-17
Stephan Saalfeld
ElasticAli
g
n fixes:
commit
|
commitdiff
|
tree
2011-06-16
S
teph
a
n
Saal
f
eld
Merge br
a
n
c
h 'mas
t
er' into elastic
-
align
commit
|
commitdiff
|
tree
2011-06-16
S
t
ephan Saalfeld
comment test r
p
i
nt
commit
|
commitdiff
|
tree
2011-05-27
Stephan S
a
alfel
d
starte
d
with E
l
astic Ali
g
nment, la
y
er a
l
i
gnment already
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Stephan Sa
a
lf
e
ld
M
erge branch 'maste
r
'
i
nto m
p
icb
g
-m
o
d
el-interfac
e
commit
|
commitdiff
|
tree
2010-11-20
Stephan S
a
alfel
d
t
racking
mpic
b
g model-interfac
e
commit
|
commitdiff
|
tree
2010-08-18
Stephan Saalfeld
mpicbg
.
tra
k
e
m
2
.
transfor
m
.
T
r
ansformMesh extr
a
polates
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
Steph
a
n Saalfel
d
Fixed b
u
g
20
2
commit
|
commitdiff
|
tree
2010-08-16
Stephan S
a
alfeld
*
add minim
a
l absolute nu
m
ber of inliers as a parameter
commit
|
commitdiff
|
tree
2010-08-16
S
tephan Sa
a
lfeld
M
e
r
ge branc
h
'maste
r
' into
r
e
j
ectcons
t
a
n
t
background
commit
|
commitdiff
|
tree
2010-08-16
Stephan Sa
a
lfeld
Merge branch
'
master' of ssh://
r
epo
.
or
.
cz/s
r
v
/gi
t
/trake
m
2
commit
|
commitdiff
|
tree
2010-08-07
Steph
a
n
Saa
l
feld
Merge
b
ranch 'r
e
jectconstantbackgroun
d
' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-07
Ste
p
han S
a
alfeld
find
i
ng connect
e
d tiles
moved into ba
s
e class
commit
|
commitdiff
|
tree
2010-08-07
St
e
phan Saalfeld
use ou
t
lier filter in optimizer
commit
|
commitdiff
|
tree
2010-08-07
Stephan
S
aa
l
f
eld
finding
connected tiles moved in
t
o base class
commit
|
commitdiff
|
tree
2010-08-06
S
t
ephan
Saalfeld
Merg
e
b
ranch 'rejectconstan
t
background' of ssh://repo
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Ste
p
han Saal
f
eld
Fix
w
rong paramete
r
choice in
AlignTask
commit
|
commitdiff
|
tree
2010-08-05
Stepha
n
Saa
l
fel
d
Merge b
r
anch 'master' into re
j
ectconstantbackground
commit
|
commitdiff
|
tree
2010-08-05
S
t
ephan Sa
a
lfeld
extended
verbosity of the tile matching
commit
|
commitdiff
|
tree
2010-08-05
Stephan
Saalf
e
ld
Added a filter to
r
eject co
n
stant backgro
u
nd patter
n
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalf
e
ld
M
e
rg
e
bra
n
ch 'master'
of ssh:
/
/re
p
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2010-03-19
Stephan Saalfel
d
Recovered the most importatn of I
g
nacio's
p
r
evious
.
.
.
commit
|
commitdiff
|
tree
2010-03-19
Stephan Sa
a
lf
e
ld
Merge bran
c
h
'master' into l
e
ns-model
commit
|
commitdiff
|
tree
2010-03-19
St
e
phan Saalfeld
Created Po
l
ynomialModel2D, a wrapper for Vere
n
a Kaynig's
commit
|
commitdiff
|
tree
2010-03-18
Step
h
an S
a
alf
e
l
d
A
d
ded the ma
x
imal ac
c
epted fac
t
or t
o
me
a
n PointMa
t
ch
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
Stephan Saalf
e
l
d
R
e
move matches with
large
d
isplacement from t
h
e configuration
commit
|
commitdiff
|
tree
2010-02-23
Steph
a
n Saalf
e
ld
fixed calibration of scaled snapshots when exporting
.
.
.
commit
|
commitdiff
|
tree
2010-02-22
Stephan Saal
f
eld
fixed cali
b
ration of scaled
s
napsh
o
ts
commit
|
commitdiff
|
tree
2010-02-19
Ste
p
han Saalfeld
A
l
ignTask: when deforming, ti
l
es ARE already
i
n pl
a
ce
commit
|
commitdiff
|
tree
2010-02-19
Stepha
n
S
aalfeld
Ali
g
nT
a
sk
:
F
i
x
e
d missuse of a
static variable
.
commit
|
commitdiff
|
tree
2010-02-19
Step
h
an Sa
a
l
f
eld
Remove
t
h
e
n
ever used
s
h
ake m
e
thod from
a
bstract Mod
e
l
.
commit
|
commitdiff
|
tree
2010-02-10
Stepha
n
S
aalfeld
Fixed a
b
u
g that made
t
he original imag
e
appear behind
commit
|
commitdiff
|
tree
2010-02-09
S
t
ephan
Saalf
e
ld
S
ynchronize
d
scre
e
nPatchRan
g
es
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saalfel
d
minor
c
leanup
i
n
l
enscorre
c
tion
commit
|
commitdiff
|
tree
2010-02-09
Stephan Saal
f
eld
Ad
d
ed Tra
n
sf
o
rmMeshMapp
i
ngWithMasks for more efficient
.
.
.
commit
|
commitdiff
|
tree
2010-02-09
S
t
ephan Saal
f
eld
N
o
n
LinearTrans
f
o
rm
M
ode can propagat
e
t
h
e
transformation
.
.
.
commit
|
commitdiff
|
tree
2010-02-07
Ste
p
h
a
n Saalfeld
For now, don't
sc
a
le
m
ax
E
psil
o
n
.
commit
|
commitdiff
|
tree
2010-02-07
Stephan Sa
a
lfe
l
d
Align Multi-La
y
er-
M
o
saic: Use up t
o
2x maxOct
a
ve
S
ize
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
St
e
phan
S
a
a
lfeld
F
i
nished the deform operation to cons
i
der all graphs
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan S
a
alfeld
Fi
x
ed
Float
.
MIN_VALUE
t
o Float
.
MAX_V
A
L
U
E
wher
e
it remained
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stepha
n
Saalf
e
ld
alig
n
MultiLay
e
rMosaic finally u
s
es graph
-
based pre
.
.
.
commit
|
commitdiff
|
tree
2010-01-29
Stephan
Saalfeld
chang
e
d default value
of SIFT
.
maxO
c
taveSize = 600
commit
|
commitdiff
|
tree
2010-01-29
Stephan Saalfeld
fixed pairOverlappingTil
e
s( List, List, List[]
)
commit
|
commitdiff
|
tree
2010-01-28
Stephan Saalfeld
added correspo
n
dence wei
g
ht
a
s a para
m
eter to
Align
.
.
.
commit
|
commitdiff
|
tree
2009-11-05
S
tep
h
a
n Saa
l
feld
M
erge branch
'master' int
o
bunwa
r
pj
commit
|
commitdiff
|
tree
2009-11-04
Steph
a
n
S
aalfeld
Merge bra
n
c
h
'master' into bunwarpj
commit
|
commitdiff
|
tree
2009-11-03
Stephan Saalfeld
F
i
xed Composite
M
odes
to work
in the following configura
t
ions
commit
|
commitdiff
|
tree
2009-11-03
Step
h
an
S
aalfeld
Revert
"
Work around ann
o
y
i
ng bug in G
r
aph
i
cs2D,
i
n
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
S
t
e
phan Saalfeld
Fixed CompositeModes to work in t
h
e follow
i
ng configur
a
tions
commit
|
commitdiff
|
tree
2009-11-03
St
e
phan Saalfeld
Separating Alig
n
LayersTas
k
f
r
o
m A
l
i
gnT
a
sk
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
Saalfeld
R
evert "Work around annoying
b
ug i
n
G
r
aphi
c
s2D, in
.
.
.
commit
|
commitdiff
|
tree
2009-11-03
S
tephan Saalf
e
ld
Merge b
r
a
n
c
h
'
mast
e
r' in
t
o co
m
posite-mode
s
commit
|
commitdiff
|
tree
2009-11-03
Stephan
S
a
alfeld
AddARGBCompos
i
te
can ha
n
dle image wit
h
n
o alpha
.
commit
|
commitdiff
|
tree
2009-11-03
Stephan
S
a
alfe
l
d
Added a comment in
Align
commit
|
commitdiff
|
tree
2009-10-14
Stephan S
a
a
lfeld
r
e
factore
d
a misnamed
method and sta
t
ified some parameters in
commit
|
commitdiff
|
tree
2009-10-14
Stephan Saalfe
l
d
synch
r
onized p
o
t
e
ntiall
y
concurrency un
s
afe match insertio
n
.
.
.
commit
|
commitdiff
|
tree
2009-10-13
Stephan Saalfeld
Fixed the
geometry issues and ad
d
ed support
for all
.
.
.
commit
|
commitdiff
|
tree
2009-10-09
S
t
e
phan Saalfeld
C
atchi
n
g and hand
l
ing OutOfMemoryE
r
r
o
rs in FeatureExtra
c
ti
o
n
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
Stephan
S
aalfel
d
C
o
smetics in A
l
ignTask and SimilarityModel2D
commit
|
commitdiff
|
tree
2009-10-08
S
t
ephan Saalfeld
l
e
nsc
o
r
r
ection stops no
w
late
r
but latest
after the
.
.
.
commit
|
commitdiff
|
tree
2009-10-08
S
tep
h
a
n
Saalfeld
Merge
b
ranch '
m
aster' of ssh://r
e
po
.
or
.
cz/srv/g
i
t/tra
k
e
m
2
commit
|
commitdiff
|
tree
2009-10-07
Stephan
S
aalfeld
Mer
g
e branch 'mas
t
e
r' of ss
h
://repo
.
or
.
cz
/
srv/g
i
t/trak
e
m2
commit
|
commitdiff
|
tree
2009-10-07
Steph
a
n Saalfeld
Fix 0
.
5grey background for By
t
eProces
s
o
r
s in
commit
|
commitdiff
|
tree
2009-09-24
Stephan Sa
a
lfeld
Merge branch '
m
aster' of s
s
h://repo
.
or
.
cz/sr
v
/git/t
r
akem2
commit
|
commitdiff
|
tree
2009-09-23
St
e
p
han Saalfeld
Saving
a
lot
of RAM
in visuali
z
ing the lens disto
r
tion
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
St
e
phan
S
aa
l
fel
d
Me
r
ge branch 'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stephan
S
a
a
lf
e
ld
Ho
p
e
fu
l
ly
fixed the scaling i
n
S
t
ack
commit
|
commitdiff
|
tree
2009-09-17
Stepha
n
Saalfeld
M
e
rge branc
h
'stack' into align
commit
|
commitdiff
|
tree
2009-09-17
Steph
a
n Saalfel
d
Merg
e
branch 'st
a
ck' of ssh://rep
o
.
or
.
cz/srv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Stephan Saalfel
d
M
e
rge branch 's
t
ack' into align
commit
|
commitdiff
|
tree
2009-09-17
Stepha
n
Sa
a
lfeld
se
p
arated the
a
ctual
a
l
i
g
n
L
a
yersLinea
r
ly job from the
.
.
.
commit
|
commitdiff
|
tree
2009-09-17
Ste
p
ha
n
Saalfeld
Loader
u
ses d
b
_lock
commit
|
commitdiff
|
tree
2009-09-16
Stephan Sa
a
lfeld
Merge branch 'align' of ssh://r
e
p
o
.
or
.
cz/s
r
v
/
g
i
t
/
trakem
2
.
.
.
commit
|
commitdiff
|
tree
2009-09-16
St
e
phan Saalfeld
Fixed a
b
u
g th
a
t prevente
d
t
he multi-layer mosaickin
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
S
tephan
Saalfe
l
d
Merge branch 'st
a
ck' of
ssh://repo
.
or
.
cz/
s
rv/git/trakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-14
St
e
phan Saalfeld
a ver
y
intermedia
t
e commit that inter
r
upts me
a
t
starting the
commit
|
commitdiff
|
tree
2009-09-11
Stephan Saalfeld
decachi
n
g wa
s
not su
c
cessful---truing ano
t
her o
n
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-11
Ste
p
han Saalfeld
Decache
processe
d
patches a
f
ter app
l
ication of
t
he CT
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalf
e
ld
Me
r
g
e
branch 'align' of
s
sh://repo
.
or
.
cz/sr
v
/git/
t
rakem2
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Stephan Saalfeld
Added a
defor
m
optio
n
to the
m
ult
i
-
l
ayer-mosaic m
e
thod
.
commit
|
commitdiff
|
tree
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