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included match intensities plugin, build with SNAPSHOTS for testing
2015-09-02
Stephan Saalfeld
included matc
h
intensit
i
es plugin,
b
uild with SNAPSHOTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
Steph
a
n
Saalfeld
Merge pull requ
e
st #11 from hanslovsky/master
commit
|
commitdiff
|
tree
2015-04-07
Stephan
S
aalfeld
next dev
e
lopment
cycle
commit
|
commitdiff
|
tree
2015-04-07
Stephan S
a
alf
e
ld
release pom-
t
rake
m
2-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Step
h
a
n
Saalfeld
re-release pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
Stephan Saalfe
l
d
n
e
xt
d
e
v
elo
p
ment cycle
commit
|
commitdiff
|
tree
2015-03-24
Steph
a
n Saalfel
d
re-release pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
S
t
ep
h
an Saalfeld
next devel
o
pm
e
nt
c
y
c
le (prob
l
em with
E
c
l
ipse Kep
l
er
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saalfe
l
d
release pom
-
trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
Stephan Saalfeld
n
e
xt d
e
velopment cycle
commit
|
commitdiff
|
tree
2015-03-07
St
e
phan Saalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
Step
h
an Saal
f
eld
n
ext developmen
t
cycle
commit
|
commitdiff
|
tree
2015-02-14
Stephan
Saalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
Stepha
n
Saal
f
e
l
d
release
commit
|
commitdiff
|
tree
2015-01-14
Stephan Saalfeld
added get
t
ers
for mls2 p, q, and w
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfeld
Ad
d
ed Eric
T
rautman's check f
o
r
n
umber of threads t
o
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
St
e
phan
S
aalfeld
Fixed Value2NoiseFi
l
t
er max export
commit
|
commitdiff
|
tree
2014-12-19
Steph
a
n Saal
f
eld
bum
p
to next de
v
elo
p
men
t
cycle
commit
|
commitdiff
|
tree
2014-12-19
St
e
ph
a
n Saalfeld
Mer
g
e remote-tracking branch 'origin'
commit
|
commitdiff
|
tree
2014-12-19
St
e
ph
a
n
S
a
alfeld
r
e
p
r
oduc
i
ble build pom-trakem
2
-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saa
l
fel
d
sep
a
rat
e
d Coordi
n
a
teTransform parts of le
n
scorrecti
o
n
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Ste
p
h
a
n
Saal
f
eld
a
dded multiple level d
o
wns
a
mpling
fo
r
ColorProcessor
commit
|
commitdiff
|
tree
2014-12-17
Stephan S
a
alfeld
bump to ne
x
t deve
l
opment cycle
commit
|
commitdiff
|
tree
2014-12-17
Step
h
an S
a
alfel
d
seco
n
d
try to make reprod
u
c
i
ble b
u
i
l
d pom-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Step
h
an Saalfeld
M
e
rge
branch 'intensity
-
trans
f
or
m
'
commit
|
commitdiff
|
tree
2014-12-13
Ste
p
h
an
Sa
a
lfeld
bump to next d
e
velopme
n
t
cycle
commit
|
commitdiff
|
tree
2014-12-13
St
e
phan Saal
f
e
ld
rep
r
od
u
cible bui
l
d
p
om-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
S
t
e
pha
n
S
a
alfeld
Merge remote-tracking branc
h
'ori
g
in/m
a
ster'
commit
|
commitdiff
|
tree
2014-12-12
Steph
a
n Saal
f
eld
bump to new development
cycl
e
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
reproducibl
e
b
u
i
ld po
m
-trakem2-
1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
M
e
rge
b
ranch 'master' of github
.
com:t
r
akem2
/
TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
added ValueTo
N
oi
s
e
f
ilter which fills a give
n
i
n
t
e
n
s
i
ty
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Stephan Saalfeld
Updat
e
RE
A
DME
commit
|
commitdiff
|
tree
2014-11-12
Stephan Saalfe
l
d
U
pdat
e
README
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfe
l
d
M
erge branch 'maste
r
' into coordXfmFix
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
Merge r
e
mote-tr
a
cking bra
n
ch 'o
r
igi
n
/
i
ntensity-transf
o
rm'
commit
|
commitdiff
|
tree
2014-10-04
Stephan S
a
alfeld
adde
d
R
o
bus
t
NormalizedLocalContrastFilter, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
Cha
n
g
e
d d
e
f
a
ult b
l
ock r
a
dius in
N
o
rmaliz
e
Lo
c
al
C
ontrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
auto-removed some tr
a
i
n
i
n
g
whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
a
alfeld
add
e
d run meth
o
d
tha
t
does no
t
need a wor
k
e
r
f
o
r
easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
tephan
S
aalf
e
ld
auto-rem
o
v
e
d s
o
me t
r
ailing whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan
Saalf
e
ld
paralleliz
e
d intersect
i
on tests for pair
O
verlappingTiles
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an Saalfe
l
d
auto-finalize consta
n
t properties and
paramet
e
rs in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalfeld
threadsafe Utils
.
ensure
(
File)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Sa
a
lf
e
l
d
fixe
d
bug in generation of alpham
a
sks
commit
|
commitdiff
|
tree
2014-06-05
S
t
ephan Saalfeld
externalized D
i
stortio
n
Correction
.
r
un t
o
e
nable call
i
ng
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
S
t
ephan Saalfeld
Ecl
i
pse au
t
u
-
cosmetic
s
i
n
DistortionCorre
c
tion
commit
|
commitdiff
|
tree
2014-05-19
St
e
phan Sa
a
lfeld
Merge br
a
n
c
h 'master' into intensity-t
r
an
s
form
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan
S
aalfeld
use sta
n
dard writer for
c
oo
r
dinatetr
a
nsforms
commit
|
commitdiff
|
tree
2014-05-19
S
tephan Sa
a
lfeld
depend
o
n
j
a
v
ax
.
media fo
r
jai
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
h
a
n Saalfe
l
d
adde
d
meth
o
ds for downsampling more
than one leve
l
commit
|
commitdiff
|
tree
2013-10-10
Steph
a
n Saal
f
eld
replace
d
p
l
ugin
s
.
config with the Fiji versio
n
commit
|
commitdiff
|
tree
2013-09-20
Stephan
Saalfe
l
d
Merge
branch 'master
'
of ssh://rep
o
.
o
r
.
cz
/
srv
/
git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
t
ephan
Saalfeld
M
erge branch 'master
'
o
f
s
sh://repo
.
or
.
c
z/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2013-09-19
Stephan S
a
alfe
l
d
Parallel pairOverlap
p
ingTiles did not w
o
r
k
and reporte
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfe
l
d
Merge branch 'master' of
s
s
h:
/
/repo
.
or
.
cz/srv/git/tra
k
em2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
re-added legacy opt
i
mizer for spri
n
g meshes, this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
St
e
ph
a
n Saalfeld
T2-NIT
/
pom
.
xml can inheri
t
versi
o
n
nu
m
ber from
p
arent
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
added mis
s
ing de
p
endencies
t
o java3d cor
e
-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
t
e
p
han Saal
f
eld
set parent pom of pom-trakem2 to po
m
-fiji
.
2
.
0
.
0
-
SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfeld
Mer
g
e bra
n
ch '
s
pring-mesh2'
o
f ssh://repo
.
or
.
cz/sr
v
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
St
e
p
h
an S
a
al
f
eld
M
er
g
e
branch 'master' int
o
spri
n
g-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n
S
aalfeld
ra
i
se
d
mpicbg dependen
c
y version to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han Saalfeld
raised depende
n
cy to Simpl
e
_Neurite_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Mer
g
e branch 'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added comments and au
t
o-
f
inalize in Distor
t
io
n
Corr
e
ction/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfeld
a
d
d
e
d mpicbg
.
version a
s
mave
n
property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan
S
aalfeld
track m
o
ve of the imgli
b
1 dependency
commit
|
commitdiff
|
tree
2013-04-22
S
t
ephan Saalfeld
M
erge branc
h
'ma
s
ter' i
n
to
s
pring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Sa
a
lfeld
Merge br
a
nch 'master' into spri
n
g-mesh2
commit
|
commitdiff
|
tree
2013-01-18
St
e
ph
a
n
Saa
l
feld
use ar
r
aylis
t
where arraylists
are returned
commit
|
commitdiff
|
tree
2013-01-16
Stephan S
a
alfel
d
adjust mpicbg sprin
g
-m
e
sh2 w
h
ich n
e
e
d
s
less dampi
n
g
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan Saalfeld
Fixed bug i
n
Patc
h
.
ge
t
Full
C
oordinateTransform
th
a
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Chan
g
ed fixe
d
Patches/
T
iles input col
l
ection t
o
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Step
h
an
S
a
alfeld
Pair constructor has
t
o be
public
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saalfeld
for
g
ot to
set isA
l
igned flag in
e
lastic layer
a
li
g
nment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan
Saalf
e
l
d
e
lastic
m
ontage param must be public
commit
|
commitdiff
|
tree
2013-01-07
Ste
p
han
S
aalf
e
l
d
a
d
ded
Pa
t
c
h
.
getFullCordinateTransform
(
)
which g
e
nerates
a
commit
|
commitdiff
|
tree
2013-01-07
Stepha
n
Saa
l
f
e
ld
* removed isAligned from Abstract Param class
commit
|
commitdiff
|
tree
2013-01-05
Stephan S
a
alfeld
877: it is
legal
for layerThi
n
g
t
o
be nu
l
l
commit
|
commitdiff
|
tree
2012-12-21
St
e
phan Saal
f
eld
C
orr
e
cted
several long-standing issues with SIFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
St
e
ph
a
n Saalfeld
RegularizedLayerAl
i
gnment got
m
o
re f
l
exi
b
le API methods
and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalf
e
ld
cleari
n
g cache in layer ali
g
nment m
u
st
b
e default true
commit
|
commitdiff
|
tree
2012-12-19
Ste
p
han Saalf
e
ld
prin
t
optimizer results and do
not prin
t
"ma
t
ch
i
ng
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan
Saalfeld
do not
remove
e
mpty lay
e
rs in l
a
y
e
r alignment
commit
|
commitdiff
|
tree
2012-11-07
Ste
p
han Sa
a
lfeld
fixed version number of mpicbg d
e
pe
n
dency
commit
|
commitdiff
|
tree
2012-11-07
Steph
a
n Saalfeld
fixed me
r
ge error: mo
v
ed R
o
bustNormalizeLocalCo
n
trast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
t
ephan Saalfeld
mu
l
ti-th
r
e
aded Rob
u
stNormalizeLocalC
o
ntrast main body
commit
|
commitdiff
|
tree
2012-09-01
Stepha
n
S
aalfeld
Removed DisplayCanvas
.
setDrawingColor(
i
nt,int,b
o
olean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Step
h
an Saalfe
l
d
Merge branch 'ma
s
ter' of ssh://r
e
po
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalf
e
ld
added expe
r
i
men
t
al l
o
cal
c
ontrast e
n
hance
r
RobustNormalizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan S
a
alf
e
ld
r
emoved obsolete choice from align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saa
l
feld
split elastic mon
t
age dia
l
og
f
o
r
bloc
k
match
i
n
g and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
Merge
b
ranc
h
'master
'
of
ssh://repo
.
or
.
cz/srv/git/
t
ra
k
em2
commit
|
commitdiff
|
tree
2012-06-26
Ste
p
han Saalfeld
use and do not ignore alpha in h
e
lpe
r
met
h
od
commit
|
commitdiff
|
tree
2012-06-21
Ste
p
han Saalfeld
use th
e
new sequ
e
ntia
l
d
i
alo
g
s
i
n
"montage" for a s
e
lect
i
on
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Merge branch 'master'
o
f
ssh://
r
ep
o
.
or
.
cz/srv/git/tra
k
em2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
f
i
x
e
d range chec
k
in layer alignment
commit
|
commitdiff
|
tree
2012-06-14
S
t
eph
a
n Saalfeld
fixed
c
onditi
o
n check in Align Layers for regularizatio
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan
S
aalfeld
Merge branc
h
'm
a
ster' i
n
to regulariz
e
d-aff
i
ne
commit
|
commitdiff
|
tree
next