tests/doctests_test.py

   1 """
   2 Run all of the doctests in the doc/*.rest files.
   3 """
   4 import os, os.path
   5 from testlib import testutil
   6 import unittest, doctest
   7
   8 def codetest():
   9     "Test the code here before adding to doctest @CTB"
  10     import pygr
  11     from pygr.seqdb import SequenceFileDB
  12     db = SequenceFileDB(os.path.join('data', 'partial-yeast.fasta'))
  13     chr02 = db['chr02']
  14     start, stop = (87787, 86719)
  15     x = chr02[start:stop]
  16
  17 def get_suite():
  18     suite = unittest.TestSuite()
  19
  20     names = [
  21 #        'contents.rst',
  22 #        'sequences.rst',
  23 #        'contrib%sfetch.rst' % os.path.sep,   @CTB does not work on my system?
  24 #        'recipes%spygrdata_recipes.rst' % os.path.sep,
  25 #        'recipes%salignment_recipes.rst' % os.path.sep,
  26     ]
  27
  28     # needs relative paths for some reason
  29     doctestpath = os.path.join('..', 'doc', 'rest')
  30     paths = [ os.path.join(doctestpath, name) for name in names ]
  31
  32     for path in paths:
  33         docsuite = doctest.DocFileSuite(path)
  34         suite.addTest(docsuite)
  35
  36     return suite
  37
  38 if __name__ == '__main__':
  39     #codetest()
  40     suite  = get_suite()
  41     runner = unittest.TextTestRunner(verbosity=2)
  42     runner.run(suite)