misc/pygrrc.example

   1 # This is an example config file for Pygr, listing all sections
   2 # and keywords supported at the moment.
   3
   4 [megatests]
   5 expectedRunningTime = 11
   6 logDir = /result/pygr_megatest/src_save
   7 mailFrom = testrunner@somehost.edu
   8 mailTo_failed = somethingswrong@pygr.org, logger@pygr.org, dev@bugfix.org
   9 mailTo_ok = wentokay@pygr.org, logger@pygr.org
  10 runningTimeAllowedDelay = 9
  11 testInputDB = PYGRDB_JAN06
  12 testInputDir = /result/pygr_megatest
  13 testOutputBaseDir = /usr/tmp/deepreds
  14
  15 [megatests_dm2]
  16 smallSampleKey = chrYh
  17 smallSampleKey_nlmsa = chr4h
  18 mafDir = /result/pygr_megatest/maf_data
  19 msaDir = /result/pygr_megatest/maf_test
  20 seqDir = /result/pygr_megatest/seq_data
  21
  22 [megatests_hg18]
  23 smallSampleKey = chrY
  24 axtDir = /result/pygr_megatest/axt_data
  25 mafDir = /result/pygr_megatest/maf_data3
  26 msaDir = /result/pygr_megatest/maf_test3
  27 seqDir = /result/pygr_megatest/seq_data3
  28