db/GrantStockPermissions.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  GrantStockPermissions.pm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run ThisPackageName [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16
  17 Take care of web_usr permissions for the Chado Stock module
  18 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  19
  20 =head1 AUTHOR
  21
  22  Naama Menda<nm249@cornell.edu>
  23
  24 =head1 COPYRIGHT & LICENSE
  25
  26 Copyright 2010 Boyce Thompson Institute for Plant Research
  27
  28 This program is free software; you can redistribute it and/or modify
  29 it under the same terms as Perl itself.
  30
  31 =cut
  32
  33
  34 package GrantStockPermissions;
  35
  36 use Moose;
  37 extends 'CXGN::Metadata::Dbpatch';
  38
  39
  40 sub init_patch {
  41     my $self=shift;
  42     my $name = __PACKAGE__;
  43     print "dbpatch name is :'" .  $name . "'\n\n";
  44     my $description = 'Granting permissions to web_usr on the chado stock module';
  45     my @previous_requested_patches = ('LoadChadoStock'); #ADD HERE
  46
  47     $self->name($name);
  48     $self->description($description);
  49     $self->prereq(\@previous_requested_patches);
  50     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  51 }
  52
  53 sub patch {
  54     my $self=shift;
  55
  56
  57     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  58
  59     print STDOUT "\nExecuting the SQL commands.\n";
  60
  61     my @tables = (
  62         qw /
  63 stock
  64 stock_pub stockprop
  65 stockprop_pub
  66 stock_relationship
  67 stock_relationship_pub
  68 stock_dbxref
  69 stock_cvterm
  70 stock_genotype
  71 stockcollection
  72 stockcollectionprop
  73 stockcollection_stock
  74 / );
  75
  76     foreach my $t (@tables) {
  77         my $seq = $t . "_" . $t . "_id_seq";
  78         print "Granting permissions to web_user on table $t and sequence $seq\n";
  79
  80         $self->dbh->do( 'SET SEARCH_PATH TO public' );
  81         $self->dbh->do( "GRANT SELECT, UPDATE, INSERT ON $t TO web_usr" );
  82         $self->dbh->do( "GRANT USAGE ON $seq TO web_usr" );
  83     }
  84     print "You're done!\n";
  85 }
  86
  87
  88 ####
  89 1; #
  90 ####