5 * -a file1 -a +file2 will link file2 to file1 similar to ::::+
7 * --bar shows total time when all jobs are done.
9 * Bug fixes and man page updates.
11 News about GNU Parallel:
13 * Using GNU Parallel in bash scripts to optimize python processes
14 https://climate-cms.org/posts/2023-11-02-gnu-parallel.html
21 * Bug fixes and man page updates.
23 News about GNU Parallel:
25 * Resume long parallel jobs
26 https://ginolhac.github.io/posts/2023-10-02_resume-parallel/index.html
28 * Efficiency and Speed with GNU Parallel
29 https://dev.to/0xog_pg/efficiency-and-speed-with-gnu-parallel-loo
36 * Bug fixes and man page updates.
38 News about GNU Parallel:
40 * This CLI Tool is AMAZING | Prime Reacts
41 https://www.youtube.com/watch?v=ry49BZA-tgg
43 * New Data Engineering Stack - GNU parallel
44 https://www.linkedin.com/feed/update/urn:li:activity:7100509073149743104?updateEntityUrn=urn%3Ali%3Afs_feedUpdate%3A%28V2%2Curn%3Ali%3Aactivity%3A7100509073149743104%29
51 * Bug fixes and man page updates.
53 News about GNU Parallel:
55 * GNU Parallel, where have you been all my life?
56 https://alexplescan.com/posts/2023/08/20/gnu-parallel/
58 * Parallel (multithreaded) music download from Youtube
59 https://hrna.moe/?p=parallel-multithread-music-download
66 * Time functions (e.g. yyyymmdd($secs) ) can now take secs since epoch as argument.
68 * Bug fixes and man page updates.
75 * Bug fixes and man page updates.
77 News about GNU Parallel:
79 * Run faster in the terminal with Gnu Parallel https://www.youtube.com/watch?v=fSYVYsKXWP0
81 * Building an (Evil) Android Phone Bot Army http://blog.faucher.net/2023/05/building-evil-android-phone-bot-army.html
88 * Bug fixes and man page updates.
90 News about GNU Parallel:
92 * Introduction to parallel computing https://youtu.be/fvrHXV8yqU4?t=2874
94 * Script for summarizing GNU parallel joblog file https://github.com/gavinmdouglas/parallel_joblog_summary
96 * How to copy a single file to multiple directories in Linux or Unix https://www.cyberciti.biz/faq/linux-unix-copy-a-file-to-multiple-directories-using-cp-command/
98 * Search in your Jupyter notebooks from the CLI, fast. https://dev.to/attilavm/search-in-your-jupyter-notebooks-from-the-cli-fast-1408
100 * Parallel Job Orchestration with GNU Parallel https://www.youtube.com/watch?v=2tVpUfND3LI
102 * Optional Individual Submission 4 Job Handling 20266001 - GNU Parallel https://www.youtube.com/watch?v=eC_RPuFCcU8
104 * DOE Cross-facility Workflows Training - April 12, 2023 https://www.youtube.com/watch?v=Ke3sirM-aQQ
106 * How to run MiXCR 4.x on multiple patient samples using GNU Parallel https://www.youtube.com/watch?v=OXg-WHlB_dk
113 * --jobs evaluates expression: +3*log(55)% = ncpu*1.12
115 * Bug fixes and man page updates.
117 News about GNU Parallel:
119 * Running shell script in parallel
120 https://w3toppers.com/running-shell-script-in-parallel/
122 * Simulating climate risk scenarios for the Amazon Rainforest
123 https://aws.amazon.com/blogs/hpc/simulating-climate-risk-scenarios-for-the-amazon-rainforest/
125 * How To Use Your Entire CPU In Bash With Parallel
126 https://bash-prompt.net/guides/parallell-bash/
128 * Bash - parallel command execution
129 https://medium.com/linuxstories/bash-parallel-command-execution-d4bd7c7cc1d6
131 * 3 tips for faster batch post-pro
132 https://www.cfdengine.com/newsletter/142/
139 * Better support for wide characters in --latest-line.
141 * Support for rsync 3.2.7.
143 * Bug fixes and man page updates.
150 * parsort: --parallel now does closer to what you expect.
152 * parallel: --files0 is --files but \0 separated.
154 * Bug fixes and man page updates.
156 News about GNU Parallel:
158 * 5 great Perl scripts to keep in your sysadmin toolbox
159 https://www.redhat.com/sysadmin/perl-scripts
166 * Bug fixes and man page updates.
168 News about GNU Parallel:
170 * The Best Ethical Hacking Tools of 2023 (and their basic usage)
171 https://www.purevpn.com/blog/the-best-hacking-tools-of-2023/#11_GNU_Parallel
173 * GNU Parallel: criando atividades em paralelo com shell script
174 https://www.vivaolinux.com.br/artigo/GNU-Parallel-criando-atividades-em-paralelo-com-shell-script/
181 * --results works on more file systems (e.g. fat)
183 * Joblog gives the same exit code as bash.
185 News about GNU Parallel:
187 * Programação Shell Linux: Paralelismo de processos com GNU parallel
188 https://www.youtube.com/watch?v=duheTWLIrp8
190 * Talk Python: Data Science from the Command Line
191 https://talkpython.fm/episodes/show/392/data-science-from-the-command-line
198 * Support for IPv6 adresses and _ in hostnames in --sshlogin.
200 * Use --total-jobs for --eta/--bar if generating jobs is slow.
202 * A lot of bugs fixed in --latest-line.
204 * Better support for MSYS2.
206 * Better Text::CSV error messages.
208 * --bar supports UTF8.
210 * Bug fixes and man page updates.
212 News about GNU Parallel:
214 * GNU Parallel is now on Mastodon: @GNU_Parallel@hostux.social
221 * --latest-line chops line length at terminal width.
223 * Determine max command length faster on Microsoft Windows.
225 News about GNU Parallel:
227 * Distributed Task Processing with GNU Parallel
228 https://www.youtube.com/watch?v=usbMLggdMgc
230 * GNU Parallel workflow for many small, independent runs
231 https://docs.csc.fi/support/tutorials/many/
233 * Copy a File To Multiple Directories With A Single Command on Linux
234 https://www.linuxfordevices.com/tutorials/linux/copy-file-to-multiple-directories-with-one-command
236 * Behind The Scenes: The Power Of Simple Command Line Tools At Cloud
238 https://blog.gdeltproject.org/behind-the-scenes-the-power-of-simple-command-line-tools-at-cloud-scale/
240 * Run lz4 compression in parallel using GNU parallel
241 https://www.openguru.com/2022/09/
243 * Xargs / Parallel With Code Examples
244 https://www.folkstalk.com/2022/09/xargs-parallel-with-code-examples.html
246 * Parallel processing on a single node with GNU Parallel
247 https://www3.cs.stonybrook.edu/~cse416/Section01/Slides/SeaWulfIntro_CSE416_09222022.pdf
249 * Using GNU parallel painlessly -- from basics to bioinformatics job
250 orchestration https://www.youtube.com/watch?v=qypUdm-IE9c
257 * --colour-failed only changes output for failing jobs.
259 * Password for --sshlogin can be put in $SSHPASS.
261 * Examples are moved from `man parallel` to `man parallel_examples`.
263 * Bug fixes and man page updates.
265 News about GNU Parallel:
267 * WOMM - Works On My Machine uses GNU Parallel https://pypi.org/project/womm/
274 * --header 0 allows using {filename} as replacement string
276 * Bug fixes and man page updates.
283 * --colour-failed will color output red if the job fails.
285 * sql: support for InfluxDB.
287 * Polarhome.com is dead, so these OSs are no longer supported: AIX
288 HPUX IRIX Minix OPENSTEP OpenIndiana OpenServer QNX Solaris Syllable
289 Tru64 Ultrix UnixWare.
291 * Bug fixes and man page updates.
298 * , can be used in --sshlogin if quoted as \, or ,,
300 * --plus {/#regexp/str} replace ^regexp with str.
302 * --plus {/%regexp/str} replace regexp$ with str.
304 * --plus {//regexp/str} replace every regexp with str.
306 * 'make install' installs bash+zsh completion files.
308 * Bug fixes and man page updates.
315 * --latest-line shows only the latest line of running jobs.
317 * --color colors output in different colors per job (this obsoletes --ctag).
319 * xargs compatibility: --process-slot-var foo sets $foo to jobslot-1.
321 * xargs compatibility: --open-tty opens the terminal on stdin (standard input).
323 * Bug fixes and man page updates.
325 News about GNU Parallel:
327 * Building a fault-tolerant work queue for command-line executions
328 with GNU Parallel https://www.jvt.me/posts/2022/04/28/shell-queue/
330 * Make your code do more, with less
331 https://www.blopig.com/blog/2022/05/make-your-code-do-more-with-less/
333 * W09 B IntroHPC II 20220513 gnu parallel
334 https://www.youtube.com/watch?v=2udvC90rIa4
341 * sash is no longer supported as shell.
343 * --retries 0 is an alias for --retries 2147483647.
345 * --shell-completion returns shell completion code.
347 * --ssh-login-file reloads every second.
349 * --parset is replaced with --_parset because it is only used internally.
351 * sem --pipe passes STDIN (standard input) to the command.
353 * Bug fixes and man page updates.
360 * --sshlogin user:password@host is now supported by using sshpass.
362 * Bug fixes and man page updates.
364 News about GNU Parallel:
366 * Bash: GNU Parallel with Curl
367 https://gist.github.com/CMCDragonkai/5914e02df62137e47f32?permalink_comment_id=2617456
369 * The Pipe Operator Explained
370 https://medium.com/geekculture/the-pipe-operator-explained-cbd41e23775a
377 * Encoding of remote commands has changed. This limits the length of
378 remote commands to less than half. It also requires $REMOTE_TMPDIR
379 to be writable. It makes this release beta quality.
381 * Time functions hh_mm_ss() hhmmss() hh_mm() hhmm() are now available
384 * Many options in the man page for parallel now has 'see also' for
387 * parallel_options_map.pdf is a map showing which options other
390 * {uniq} added to --plus to only run jobs with unique values.
392 * sem --fg exits with the exit code of the job.
394 * Bug fixes and man page updates.
401 * GNU Parallel turned 20 on the 2022-01-06
402 https://www.gnu.org/software/parallel/20th-birthday.html
404 * Bug fixes and man page updates.
406 News about GNU Parallel:
408 * Save Time with Modern Search Techniques
409 https://www.eventbrite.com/e/ohio-information-security-forum-january-2022-monthly-meeting-tickets-240632737997
411 * Bash "Fail immediately if any fails"
412 https://morioh.com/p/a01b883dc57c
414 * Re-encoding the EmacsConf videos with FFmpeg and GNU Parallel
415 https://sachachua.com/blog/2021/12/re-encoding-the-emacsconf-videos-with-ffmpeg-and-gnu-parallel/
417 * Bash 平行 https://learntutorials.net/ja/bash/topic/10778/%E5%B9%B3%E8%A1%8C
424 * Bug fixes and man page updates.
426 News about GNU Parallel:
428 * The first version of Parallel will be 20 years on 2022-01-06
430 * HerrComp Intro HPC gnu parallel
431 https://www.youtube.com/watch?v=tcgjKWfgWQY
434 https://qiita.com/toramili/items/44a770cfb9ef1edc9e26
436 * How To Install parallel on Ubuntu 20.04
437 https://installati.one/ubuntu/20.04/parallel/
439 * Distributing embarrassingly parallel tasks GNU Parallel
440 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
447 * Bug fixes and man page updates.
449 News about GNU Parallel:
451 * Otimizando o seu Hacking com o GNU Parallel - Mateus Buogo
452 https://www.youtube.com/watch?v=xIpPPZXDKGU
454 * SMACK 12 - Do it faster! Simple ways to use all those cores (and
455 GPUs) efficiently. https://www.youtube.com/watch?v=lXDGY7NvOYk
462 * Don't postpone output until $jobslots jobs have been started.
464 * Bug fixes and man page updates.
466 News about GNU Parallel:
468 * How to Install GNU Parallel using Anaconda | Linux
469 https://www.youtube.com/watch?v=UwDNVP-L0qA
471 * Install GNU Parallel from source code | Linux
472 https://www.youtube.com/watch?v=PIyJH4ben5o
474 * Compiling GNU Parallel on CentOS-7
475 https://thelinuxcluster.com/2021/10/19/compiling-gnu-parallel-on-centos-7/
482 * Bug fixes and man page updates.
484 News about GNU Parallel:
486 * 3 Programs that will Level Up your Bash Game
487 https://medium.com/codex/3-programs-that-will-level-up-your-bash-game-bf14e17e2291
489 * I Summarized 100+ Command-Line Tools for Data Scientists in 15
491 https://towardsdatascience.com/i-summarized-100-command-line-tools-for-data-scientists-in-15-minutes-976def544ffe
493 * Speed up Your Builds by Parallelizing
494 https://www.incredibuild.com/blog/speed-up-your-builds-by-parallelizing
496 * Bash: GNU Parallel with Curl
497 https://gist.github.com/dinh/93b936a55de9a331199d6582bc2921d2
504 * --ctag/--ctagstring colors the tag in different colors for each job.
506 * You can use unit prefixes (k, m, g, etc) with -n -N -L.
508 * Bug fixes and man page updates.
510 News about GNU Parallel:
512 * Parallelising jobs with GNU parallel
513 https://blog.ronin.cloud/gnu-parallel/
515 * Use multiple CPU Cores with your Linux commands - awk, sed, bzip2,
516 grep, wc, etc. https://cdmana.com/2021/07/20210728132344693t.html
518 * How to execute commands in parallel in Linux
519 https://net2.com/how-to-execute-commands-in-parallel-in-linux/
526 * --results no longer prints the result to standard output (stdout) as
528 https://lists.gnu.org/archive/html/parallel/2020-12/msg00003.html
530 * parset supports associative arrays in bash, ksh, zsh.
532 * Online HTML is now generated by Sphinx.
534 * Bug fixes and man page updates.
536 News about GNU Parallel:
538 * Cleaning Up Scanned Documents with Open Source Tools
539 https://kaerumy.medium.com/cleaning-up-scanned-documents-with-open-source-tools-9d87e15305b
546 * Bug fixes and man page updates.
548 News about GNU Parallel:
550 * How to use GNU Parallel
551 https://techtipbits.com/linux/how-to-use-gnu-parallel/
553 * How to Speed Up Bash Scripts with Multithreading and GNU Parallel
554 https://adamtheautomator.com/how-to-speed-up-bash-scripts-with-multithreading-and-gnu-parallel/
556 * Use Parallel to split by line
557 https://madflex.de/use-parallel-to-split-by-line/
559 * Optimizing long batch processes or ETL by using buff/cache properly
560 II (parallelizing network operations)
561 http://www.elsotanillo.net/2021/06/optimizing-long-batch-processes-or-etl-by-using-buff-cache-properly-ii-parallelizing-network-operations/
563 * Parallelization 3: GNU Parallel https://www.youtube.com/watch?v=Rl06WD60afA
570 * --plus includes {%%regexp} and {##regexp}.
572 * Bug fixes and man page updates.
574 News about GNU Parallel:
576 * Batch Calculate and Verify MD5 Checksum With GNU Parallel
577 https://omicx.cc/posts/2021-04-28-calculate-and-verify-md5-checksum-with-gnu-parallel/
579 * HerrComp Gnu parallel, c++11 threads 2021 04 28
580 https://www.youtube.com/watch?v=wDd9F9nn0qA
582 * Distributing embarrassingly parallel tasks GNU Parallel
583 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
585 * Job Parallelization on Niagara
586 https://www.maryamdaryalal.com/post/job-parallelization-on-niagara
588 * Use Parallel to split by line
589 https://madflex.de/use-parallel-to-split-by-line/
591 * m1 multi-core batch convert with gpu parallel + ffmpeg
592 https://www.youtube.com/watch?v=hAuc0YsXv6A
599 * Bug fixes and man page updates.
601 News about GNU Parallel:
603 * Bioinformatics tutorials - linux and shell advanced - parallel
604 https://www.youtube.com/watch?v=5leL8pyl0XA
606 * GNU Parallel for quick gains
607 https://edbennett.github.io/high-performance-python/04-gnu-parallel/index.html
609 * Processing Linux Commands in Parallel
610 https://www.baeldung.com/linux/processing-commands-in-parallel
613 https://docs-research-it.berkeley.edu/services/high-performance-computing/user-guide/running-your-jobs/gnu-parallel/
615 * GNU Parallel 활용 가이드https://genoglobe.com/kribb/gnu_parallel
617 * Parallel Grep and Awk
618 https://www.highonscience.com/blog/2021/03/21/parallel-grep/
620 * Getting things done with shell scripting
621 https://doma.dev/blog/get-things-done-with-bash/
626 * Bug fixes and man page updates.
628 News about GNU Parallel:
630 * The very first version of Parallel dated 2002-01-06 was found in an
641 (".PHONY : job$jobnr\n",
645 unshift @makefile, "all : ",(map { "job$_ " } 1 .. $jobnr),"\n";
647 open (MAKE, "| make -k -f - -j $processes") || die;
648 print MAKE @makefile;
651 * Introduction to GNU Parallel
652 https://www.youtube.com/watch?v=Kj-6JkAqw-8
654 * Using GNU Parallel with GooseSLURM
655 https://readthedocs.org/projects/gooseslurm/downloads/pdf/latest/#chapter.7
658 https://github.com/lijingbu/omics/blob/main/why_gnu_parallel.md
663 * --filter only run jobs where the filter is true. The filter can
664 contain replacement strings and Perl code such as: '{1} < {2}+1'
666 * --template takes a text file as a template with replacement
667 strings. Then it replaces the replacement strings and saves it
668 under a new filename.
670 * --plus implements {0%} {0#} replacement string for zero padded slot
673 * Warn that you probably mean -d '\r\n' if the first 3 values end in
676 * {= perlexpression =} must return the same value, if run twice on the
679 * Man pages available as .rst-format.
681 * Bug fixes and man page updates.
683 News about GNU Parallel:
685 * A short tutorial on Gnu Parallel
686 https://www.polarmicrobes.org/a-short-tutorial-on-gnu-parallel/
688 * 5 reasons why I love coding on Linux
689 https://opensource.com/article/21/2/linux-programming
691 * Simple Tutorial to install & use GNU Parallel
692 https://medium.com/analytics-vidhya/simple-tutorial-to-install-use-gnu-parallel-79251120d618
694 * LiDO3 - first contact
695 https://www.lido.tu-dortmund.de/cms/de/LiDO3/LiDO3_first_contact_handout.pdf
697 * Rill Stage 2-1: Ways of command-line data analysis
698 https://blog.jastix.biz/post/rill-stage-2-1-cli-data-analysis/
700 * Introduction to GNU Parallel
701 https://blog.knoldus.com/introduction-to-gnu-parallel/
703 * GNU Parallel https://www.hahwul.com/cullinan/parallel/
708 * --memsuspend suspends jobs when there is little memory free. This
709 way you can run jobs in parallel that added up potentially will take
710 up more RAM than is available.
712 * $PARALLEL_ARGHOSTGROUPS and the replacement string {agrp} will give
713 the hostgroup given on the argument when using --hostgroup.
715 * Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss()
716 yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm()
717 yyyymmdd() hash($str)
719 * Bug fixes and man page updates.
721 News about GNU Parallel:
723 * Software Engineering For Scientists
724 https://canvas.stanford.edu/courses/133091
726 * Optional Individual Submission 4 Job Handling - GNU Parallel
727 https://www.youtube.com/watch?v=-tX0bFAYAxM
729 * 关于gnu parallel:GnuParallel:在集群上并行化脚本,脚本将文件写入主
730 节点https://www.codenong.com/25172209/
733 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
738 * --pipe engine changed making --pipe alpha quality.
740 * --results -.json outputs results as JSON objects on stdout (standard
743 * --delay 123auto will auto-adjust --delay. If jobs fail due to being
744 spawned too quickly, --delay will exponentially increase.
746 * --plus sets {hgrp} that gives the intersection of the hostgroups of
747 the job and the sshlogin that the job is run on.
749 * Bug fixes and man page updates.
751 News about GNU Parallel:
753 * Best practices for accelerating data migrations using AWS Snowball
755 https://aws.amazon.com/blogs/storage/best-practices-for-accelerating-data-migrations-using-aws-snowball-edge/
757 * Pass the Output of a Command as an Argument for Another
758 https://www.baeldung.com/linux/pass-cmd-output-as-an-argument
760 * Warwick RSE Drop-in - Workflow Management Part 2 - GNU Parallel
761 https://www.youtube.com/watch?v=t_v2Otgt87g
766 * Bug fixes and man page updates.
768 News about GNU Parallel:
770 * https://bash-prompt.net/guides/gnu-parallel-multi-server/
775 * --termseq now works for jobs running remotely.
777 * parsort: Performance optimized for 64-core machines.
779 * Bug fixes and man page updates.
781 News about GNU Parallel:
783 * Juan Sierra Pons has made a testimonial:
784 http://www.elsotanillo.net/wp-content/uploads/GnuParallel_JuanSierraPons.mp4
786 * 「翻译」在生物信息学中使用 GNU-Parallel
787 https://cloud.tencent.com/developer/article/1705499
792 * New CPU detection for GNU/Linux.
794 * Bug fixes and man page updates.
796 News about GNU Parallel:
798 * Aug 21, 2020 - More Unix tools
799 https://floki.blog/2020/08/more_unix_tools
806 * Max command line length is changed for MacOS - making this version
807 beta quality for MacOS.
809 * Bug fixes and man page updates.
816 * No new functionality
818 * Bug fixes and man page updates.
820 News about GNU Parallel:
822 * Tips for Running Jobs on your VM
823 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
825 * Introduction to GNU Parallel: Parallelizing Massive Individual Tasks
826 https://www.youtube.com/watch?v=QSFLTEyCKvo
829 http://www.hpc.lsu.edu/training/weekly-materials/2020-Spring/GNUParallel_Spring_2020.pdf
831 * Linux-Fu: Parallel Universe
832 https://hackaday.com/2020/06/29/linux-fu-parallel-universe/
834 * Resumable batch jobs with gnu parallel https://igor.io/parallel/
836 * Introducing Parallel into Shell
837 https://www.petelawson.com/post/parallel-in-shell/
839 * AV1 encoding parallelization with GNU Parallel
840 https://www.reddit.com/r/AV1/comments/fjvqp9/av1_encoding_parallelization_with_gnu_parallel/
842 * Beschleunigte Befehlsbearbeitung mit GNU Parallel
843 https://www.linux-community.de/ausgaben/linuxuser/2013/06/beschleunigte-befehlsbearbeitung-mit-gnu-parallel/
850 * No new functionality
852 * Bug fixes and man page updates.
854 News about GNU Parallel:
856 * GNU Parallel is used at NERSC:
857 https://www.nersc.gov/assets/Uploads/08-Workflows-20200616.pdf
859 * Resumable batch jobs with GNU Parallel https://igor.io/parallel/
861 * Lab Meeting technical talk
862 https://www.slideshare.net/hoffmanlab/gnu-parallel-194030490
864 * Open Sky Software Website Credits
865 https://www.openskysoftware.com/site-credits.htm
867 * Speed up your Python Scripts using Ubuntu and GNU Parallel
868 https://ecce.esri.ca/wpecce/2019/12/24/speed-up-your-python-scripts-using-ubuntu-and-gnu-parallel/
870 * Indispensable command-line tools
871 https://negfeedback.blogspot.com/2020/05/indispensable-command-line-tools.html
873 * GNU Parallel for simulations
874 http://pdebuyl.be/blog/2020/gnu-parallel-for-simulations.html
876 * Introduction to GNU parallel
877 https://bioinformaticsworkbook.org/Appendix/GNUparallel/GNU_parallel_examples.html
884 * While running a job $PARALLEL_JOBSLOT is the jobslot of the job. It
885 is equal to {%} unless the job is being retried. See {%} for
888 * While running a job $PARALLEL_SSHLOGIN is the sshlogin line with
889 number of cores removed. E.g. '4//usr/bin/specialssh user@host'
890 becomes: '/usr/bin/specialssh user@host'
892 * While running a job $PARALLEL_SSHHOST is the host part of an
893 sshlogin line. E.g. '4//usr/bin/specialssh user@host' becomes:
896 * --plus activates the replacement strings {slot} = $PARALLEL_JOBSLOT,
897 {sshlogin} = $PARALLEL_SSHLOGIN, {host} = $PARALLEL_SSHHOST
899 * Bug fixes and man page updates.
901 News about GNU Parallel:
903 * Portable Batch System (PBS) & GNU Parallel - Running a Program
904 Multiple Times in Parallel
905 https://www.youtube.com/watch?v=6ccbWu6Befo
907 * GNU Parallel przykład https://www.youtube.com/watch?v=gs_wG4Kt2G4
909 * Demo of LINUX APP - GNU PARALLEL - running multiple Gstreamer webcam
910 .sh scripts with only 1 command
911 https://www.youtube.com/watch?v=trQuA_wmWjg
916 This release celebrates GNU Parallel's 10 years as a GNU tool:
918 > commit ed2dfb1043768154d4e7678e01e10287155fa834
919 > Author: Ole Tange <ole@tange.dk>
920 > Date: Thu Apr 22 01:23:00 2010 +0200
922 > Name change: Parallel is now GNU Parallel.
923 > Basic structure for sshlogin and sshloginfile.
927 * parsort makes GNU sort run faster for files with more than 1M lines.
929 * Bug fixes and man page updates.
931 News about GNU Parallel:
933 * Several clusters have updated their documentation of GNU Parallel:
934 https://www.grid5000.fr/w/GNU_Parallel
935 https://research-it.berkeley.edu/virtual-training-running-jobs-parallel-savio
936 http://www.hpc.lsu.edu/training/archive/tutorials.php
938 * add_pho uses GNU Parallel: https://github.com/SeedlingsBabylab/add_pho
940 * GNU parallel使用笔记https://zhuanlan.zhihu.com/p/37340011
942 * Virtual Workshop: Running Jobs in Parallel on Savio
943 https://ais.berkeley.edu/events/virtual-workshop-running-jobs-parallel-savio/2020-04-20
945 * Free Concurrency with GNU Parallel
946 https://phili.pe/posts/free-concurrency-with-gnu-parallel/
951 * Bug fixes and man page updates.
953 News about GNU Parallel:
955 * The GNU Parallel course in Copenhagen is cancelled
956 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
958 * The GNU Parallel course in Århus is cancelled
959 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
961 * The 10 year anniversary may be cancelled, see
962 https://www.gnu.org/software/parallel/10-years-anniversary.html
964 * Running shell commands in parallel, via GNU Parallel
965 https://dev.to/saveriomiroddi/running-shell-commands-in-parallel-via-gnu-parallel-3a72
967 * Faster nmap scanning with the help of GNU parallel
968 https://badshah.io/experiment/faster-nmap-scanning-with-the-help-of-gnu-parallel/
973 * Bug fixes and man page updates.
978 * --blocktimeout dur - Time out for reading block when using
979 --pipe. If it takes longer than dur to read a full block, use the
980 partial block read so far.
982 * Bug fixes and man page updates.
984 News about GNU Parallel:
986 * GNU Parallel course in Copenhagen
987 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
989 * GNU Parallel course in Århus
990 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
992 * GNU Parallel pour accélérer vos process sous Linux
993 https://www.yvonh.com/gnu-parallel-pour-accelerer-vos-process-sous-linux/
995 * How to copy a file to multiple directories in Linux
996 https://net2.com/how-to-copy-a-file-to-multiple-directories-in-linux/
998 * Running linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
1003 * GNU Parallel course in Copenhagen
1004 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
1006 * GNU Parallel course in Århus
1007 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
1009 * GNU Parallel is used in
1010 https://github.com/JeffersonLab/rfw_tsf_extractor
1012 * Bug fixes and man page updates.
1017 * GNU Parallel was presented at Driving IT. Slides:
1018 cloud.prosa.dk/s/drivingit
1020 * Restarting supervisord processes in parallel
1021 https://blog.naderman.de/2019/11/14/restarting-supervisord-processes-in-parallel/
1023 * Using GNU Parallel to Create Archives Faster
1024 https://www.reddit.com/r/DataHoarder/comments/dsgmhc/parallel_archiving_techniques/
1026 * Bug fixes and man page updates.
1031 * --tee will use --output-error=warn-nopipe if supported by tee.
1033 * GNU Parallel will be presented at Driving IT 2019:
1034 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
1036 * UMN Duluth: Job parallelization with task arrays and GNU parallel
1037 https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
1039 * Genome updater uses GNU Parallel
1040 https://github.com/pirovc/genome_updater
1042 * Using GNU-Parallel for bioinformatics
1043 https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
1045 * Speeding up PostgreSQL ETL pipeline with the help of GODS
1046 https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
1048 * Runing linux commands in parallel
1049 https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
1051 * Research Computing University of Colorado Boulder contains an intro
1053 https://readthedocs.org/projects/curc/downloads/pdf/latest/
1055 * 如何使用Parallel在Shell中并行执行命令
1056 https://www.myfreax.com/gnu-parallel/
1058 * 如何测试 Amazon Elastic File System
1059 https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
1061 * Bug fixes and man page updates.
1066 * --nice is now inherited by the nice level that GNU Parallel is
1067 started at. So 'nice -n10 parallel' will also cause remote jobs to
1068 be run at nice level 10.
1070 * --delay is now accurate to within 10 ms
1072 * GNU Parallel will be presented at Driving IT 2019:
1073 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
1075 * Greenland Ice Sheet solid ice discharge from 1986 through 2017
1076 https://www.earth-syst-sci-data.net/11/769/2019/essd-11-769-2019.pdf
1078 * App Center Cloud Build Machines > Installed Software > Utilities
1079 https://docs.microsoft.com/en-us/appcenter/build/software
1081 * Curryfinger - SNI & Host header spoofing utility
1082 https://dualuse.io/blog/curryfinger/
1085 https://wiki.cac.washington.edu/display/hyakusers/Hyak+parallel-sql
1087 * A meditation on analysing data with Perl in parallel using GNU Parallel
1088 https://www.reddit.com/r/perl/comments/cyo2qc/a_meditation_on_analysing_data_with_perl_in/
1090 * Accélérer ses tâches avec GNU Parallel et les lots de tâches (UL)
1091 https://www.eventbrite.ca/e/inscription-accelerer-ses-taches-avec-gnu-parallel-et-les-lots-de-taches-ul-71412840729
1093 * RMACC Summit GNU Parallel
1094 https://curc.readthedocs.io/en/latest/software/GNUParallel.html
1096 * Introducing Parallel into Shell
1097 https://petelawson.com/post/parallel-in-shell/
1099 * Linux Productivity Tools
1100 https://www.usenix.org/conference/lisa19/presentation/maheshwari
1102 * Gnu/parallel + Nfs 实现共享文件网络的并发计算等操作
1103 http://atomicer.cn/2018/01/18/gnu-parallel-nfs-%E5%AE%9E%E7%8E%B0%E5%85%B1%E4%BA%AB%E6%96%87%E4%BB%B6%E7%BD%91%E7%BB%9C%E7%9A%84%E5%B9%B6%E5%8F%91%E8%AE%A1%E7%AE%97%E7%AD%89%E6%93%8D%E4%BD%9C/#more
1105 * Bug fixes and man page updates.
1110 * GNU Parallel will be presented at Driving IT 2019:
1111 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it#beskrivelse
1113 * Linux Productivity Tools
1114 https://www.usenix.org/conference/lisa19/presentation/maheshwari
1116 * Improve your reconnaissance performance by using GNU Parallel
1117 https://mailchi.mp/3f46ceb46357/improve-your-reconnaissance-performance-by-using-gnu-parallel
1119 * Paralel İşler / İşlemler / Programlar Bash’de Nasıl Çalıştırılır?
1120 https://kaleinfo.com/2019/07/29/paralel-isler-islemler-programlar-bashde-nasil-calistirilir-2/
1122 * Use POLYBAR to change WALLPAPER with GNU Parallel
1123 https://www.youtube.com/watch?v=rjYg-b_eiRU
1125 * Finding the Balance Between Speed & Accuracy During an Internet-wide
1127 https://captmeelo.com/pentest/2019/07/29/port-scanning.html
1129 * GNU Parallel Ryugu released
1130 https://linuxreviews.org/GNU_Parallel_Ryugu_released
1132 * CO2017 - CW1 - Operating Systems & Networks - Shell scripting
1133 http://www.7daixie.com/2019071646302396.html
1135 * Bug fixes and man page updates.
1140 * {= uq; =} causes the replacement string to be unquoted. Example:
1141 parallel echo '{=uq;=}.jpg' ::: '*'
1143 * --tagstring {=...=} is now evaluated for each line with --linebuffer.
1145 * Use -J ./profile to read a profile in current dir.
1147 * Speedup of startup by 40%: Find the parent shell differently on
1148 GNU/Linux, cache information about the CPU and which setpgrp method
1149 to use to make GNU Parallel start 40% faster.
1151 * $PARALLEL_SSHLOGIN can be used in the command line.
1153 * Occasionally sane: Simple usage of GNU parallel
1154 https://vfoley.xyz/parallel/
1156 * How to run multiple bash scripts in parallel
1157 https://techieroop.com/how-to-run-multiple-bash-scripts-in-parallel/
1159 * Announcing Oracle Solaris 11.4 SRU10
1160 https://blogs.oracle.com/solaris/announcing-oracle-solaris-114-sru10
1162 * Руководство по использованию GNU Parallel https://zalinux.ru/?p=2623
1164 * Bug fixes and man page updates.
1169 * --shard can now take a column name and optionally a perl
1170 expression. Similar to --group-by and replacement strings.
1172 * Using AWK and R to parse 25tb
1173 https://livefreeordichotomize.com/2019/06/04/using_awk_and_r_to_parse_25tb/
1175 * Parallel and Visual testing with Behat
1176 http://parallelandvisualtestingwithbehat.blogspot.com/p/blog-page.html
1178 * 维基百科,自由的百科全书https://zh.wikipedia.org/wiki/GNU_parallel
1180 * Bug fixes and man page updates.
1185 * --group-by groups lines depending on value of a column. The value
1188 * How to compress (bzip / gzip) a very large text quickly?
1189 https://medium.com/@gchandra/how-to-compress-bzip-gzip-a-very-large-text-quickly-27c11f4c6681
1191 * Simple tutorial to install & use GNU Parallel
1192 https://medium.com/@gchandra/simple-tutorial-to-install-use-gnu-parallel-79251120d618
1194 * Introducing Parallel into Shell
1195 https://petelawson.com/post/parallel-in-shell/
1197 * Bug fixes and man page updates.
1202 * Invitation to the 10 years anniversary next year.
1204 * Bug fixes and man page updates.
1209 * SIGTERM is changed to SIGHUP, so sending SIGHUP will make GNU
1210 Parallel start no more jobs, but wait for running jobs to finish.
1212 * SIGTERM SIGTERM is changed to SIGTERM, so sending SIGTERM will make
1213 GNU Parallel kill all running jobs.
1215 * GNU Parallel now includes a cheat sheet: parallel_cheat.pdf
1217 * High Throughput Computing on RMACC Summit and Beyond
1218 https://calendar.colorado.edu/event/high_throughput_computing_on_rmacc_summit_and_beyond#.XH2NBhB7mV4
1220 * GNU Parallel Cheat Sheet by cpriest
1221 https://www.cheatography.com/cpriest/cheat-sheets/gnu-parallel/
1223 * Use Multiple CPU Cores(Parallelize) with Single Threaded Linux
1225 http://xensoft.com/use-multiple-cpu-cores-parallelize-with-single-threaded-linux-commands/
1227 * Bug fixes and man page updates.
1232 * --shard makes it possible to send input to a the same jobslot based
1233 on the value in one column of the input. It is similar to sharding
1236 * --shellquote --shellquote will shell quote the input twice.
1238 * GNU Parallel is available in Termux
1239 https://github.com/termux/termux-packages/tree/master/packages/parallel
1241 * Linux, command line & MetaCentrum
1242 https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf
1244 * How to supercharge your bash workflows with GNU parallel
1245 https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141
1247 * GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI
1249 * Parallelizing Freesurfer blog.cogneurostats.com/?p=148
1251 * FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw
1253 * FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/
1255 * Come ridimensionare 10k foto con la riga di comando
1256 https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
1258 * 并行处理 – Gnu Parallel:嵌套并行
1259 https://codeday.me/bug/20190122/552902.html
1261 * シェルスクリプトでコマンドを並列実行する方法
1262 https://www.kwbtblog.com/entry/2019/01/12/020423
1264 * Bug fixes and man page updates.
1269 * 'env_parallel --end-session' makes it possible to nest 'env_parallel
1272 * Using GNU Parallel in pentesting https://youtu.be/mZ0OUJmkIlA?t=873
1274 * Supercomputer Workshop: Feb 1&7
1275 http://www.ece.unm.edu/featured-students/supercomputer-workshop-feb-17.html
1277 * Bug fixes and man page updates.
1282 * Better /proc/cpuinfo parser.
1284 * Simpler job scheduling flow.
1286 * MPGI Workshop: Job Parallelization with Task Arrays and GNU Parallel
1287 https://www.msi.umn.edu/tutorials/mpgi-workshop-module-4
1289 * CONCOCT uses GNU Parallel
1290 https://media.readthedocs.org/pdf/concoct/latest/concoct.pdf
1292 * If you use SLURM read
1293 https://wiki.hpc.uconn.edu/index.php/Advanced_SLURM
1296 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
1298 * Bug fixes and man page updates.
1303 * Experimental simpler job flow control.
1305 * 時間がかかるコマンドを GNU parallel で 並列実行する
1306 https://qiita.com//grohiro/items/4db3fa951a4778c5c479
1308 * Bug fixes and man page updates.
1313 * env_parallel.fish: --session support (alpha quality)
1315 * GNU Parallel was cited in: High-throughput sequencing of murine
1316 immunoglobulin heavy chain repertoires using single side unique
1317 molecular identifiers on an Ion Torrent PGM
1318 https://doi.org/10.18632/oncotarget.25493
1320 * GNU parallel in Japanese Wikipedia
1321 https://ja.wikipedia.org/wiki/GNU_parallel
1323 * Outils de paramétrisation des tâches: lots de tâches, GNU Parallel
1324 https://www.eventbrite.ca/e/inscription-outils-de-parametrisation-des-taches-lots-de-taches-gnu-parallel-et-bqtools-midi-conference-de-50271076142
1326 * Bug fixes and man page updates.
1331 * Minix is supported again.
1333 * Updated graph showing GNU Parallel's overhead per job for each
1334 version. https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1336 * Intro to Computing at CARC includes introduction to GNU Parallel
1337 http://carc.unm.edu/education--training/workshops-and-seminars.html
1339 * Fast-GBS uses GNU Parallel https://bitbucket.org/jerlar73/fast-gbs/wiki/Home
1341 * Belgium at 10 m resolution in July 2018 http://www.cesbio.ups-tlse.fr/multitemp/?p=14116
1343 * Bug fixes and man page updates.
1348 * parset sets exit code.
1350 * How to install GNU Parallel
1351 https://www.techrepublic.com/videos/how-to-install-gnu-parallel/
1353 * Bug fixes and man page updates.
1358 * The quoting engine has been changed. Instead of using \-quoting GNU
1359 Parallel now uses '-quoting in bash/ash/dash/ksh. This should
1360 improve compatibility with different locales. This is a big change
1361 causing this release to be alpha quality.
1363 * The CPU calculation has changed. By default GNU Parallel uses the
1364 number of CPU threads as the number of CPUs. This can be changed to
1365 the number of CPU cores or number of CPU sockets with
1366 --use-cores-instead-of-threads or --use-sockets-instead-of-threads.
1368 * The detected number of sockets, cores, and threads can be shown with
1369 --number-of-sockets, --number-of-cores, and --number-of-threads.
1371 * env_parallel now support mksh using env_parallel.mksh.
1373 * GNU Parallel is distributed as part of Snippy
1374 https://github.com/tseemann/snippy
1376 * GNU Parallel: Ejecutar comandos simultáneamente en Linux
1377 https://esgeeks.com/gnu-parallel-ejecutar-comandos-simultaneo-linux/
1379 * Parallel download genomic data with GNU-Parallel
1380 https://digibio.blogspot.com/search/label/GNU-Parallel
1382 * Bug fixes and man page updates.
1387 * Deal better with multibyte chars by forcing LC_ALL=C.
1389 * GNU Parallel was introduced in Pincount Podcast:
1390 https://pincountpodcast.com/episodes/29.html
1392 * GNU Parallel was shown on Danish national news for 1.7 seconds: dr.dk
1394 * How to run Linux commands simultaneously with GNU Parallel
1395 https://www.techrepublic.com/article/how-to-run-commands-simultaneously-with-gnu-parallel/#ftag=RSS56d97e7
1397 * Easy parallelization with GNU parallel
1398 http://mpharrigan.com/2016/08/02/parallel.html
1400 * GNU Parallel for mutlithreaded tasks
1401 http://slhogle.github.io/2016/gnu-parallel/
1403 * A GNU Parallel Clustering Demo
1404 https://www.crowdsupply.com/ground-electronics/circumference/updates/a-gnu-parallel-clustering-demo
1406 * 使用 GNU Parallel 提高 Linux 命令行执行效率
1407 https://linux.cn/article-9718-1.html
1409 * Ejecutando tareas desde consola simultáneamente con GNU Parallel
1410 https://poesiabinaria.net/2018/06/ejecutando-tareas-desde-consola-simultaneamente-gnu-parallel/
1412 * Cómo ejecutar varias tareas simultáneamente en el terminal con GNU
1414 https://www.ubuntizando.com/como-ejecutar-varias-tareas-simultaneamente-en-el-terminal-con-gnu-parallel/
1416 * GNU Parallel 활용 가이드 http://genoglobe.kr/kribb/gnu_parallel
1418 * Bug fixes and man page updates.
1423 * --tty allows for more programs accessing /dev/tty in parallel. Some
1424 programs require tty access without using it.
1426 * env_parallel --session will record names in current environment in
1427 $PARALLEL_IGNORED_NAMES and exit. It is only used with env_parallel,
1428 and can work like --record-env but in a single session.
1430 * 35 day course: Linux shell scripting and text processing for big
1431 data https://comquest.in/training
1433 * How To Use Your Entire CPU In Bash With Parallel
1434 https://bash-prompt.net/guides/parallell-bash/
1436 * An easy way to run parallel jobs on Stampede2
1437 https://blog.uta.edu/xus/2017/09/29/an-easy-way-to-run-parallel-jobs-on-stampede2/
1439 * Get more done at the Linux command line with GNU Parallel
1440 https://opensource.com/article/18/5/gnu-parallel
1442 * Save Time with Modern Search Techniques
1443 https://www.sans.org/summit-archives/file/summit-archive-1524582079.pdf
1445 * GNU Parallel: haz más cosas simultáneamente en el terminal
1446 https://blog.desdelinux.net/gnu-parallel-haz-mas-cosas-simultaneamente-en-el-terminal/
1448 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
1449 https://www.slideshare.net/koji_matsuda/gnu-parallel
1451 * Bug fixes and man page updates.
1456 * --csv makes GNU Parallel parse the input sources as CSV. When used
1457 with --pipe it only passes full CSV-records.
1459 * Time in --bar is printed as 1d02h03m04s.
1461 * Optimization of --tee: It spawns a process less per value.
1463 * The GNU Parallel 2018 book is now available:
1464 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
1466 * Modern pentest tricks for faster, wider, greater engagement (15)
1467 https://conference.hitb.org/hitbsecconf2018ams/materials/D1%20COMMSEC%20-%20Thomas%20Debize%20-%20Modern%20Pentest%20Tricks%20for%20Faster,%20Wider,%20Greater%20Engagements.pdf
1469 * Running many serial jobs efficiently
1470 https://userinfo.surfsara.nl/documentation/running-many-serial-jobs-efficiently
1472 * GNU Parallel: как сохранить результаты нескольких команд для
1473 переменной? http://fliplinux.com/gnu-parallel-6.html
1475 * Running Multiple Commands in Parallel on a GNU Linux
1476 https://www.youtube.com/watch?v=sHpTywpb4_4
1478 * Klaatu covers the documentation of GNU parallel in episode 12x15
1479 http://gnuworldorder.info/
1481 * Bug fixes and man page updates.
1486 * niceload -p can now take multiple pids separated by comma
1488 * --timeout gives a warning when killing processes
1490 * --embed now uses the same code for all supported shells
1492 * --delay can now take arguments like 1h12m07s
1494 * Parallel. Straight from your command line
1495 https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee
1497 * GNU Parallel was used in POAP-Parallelized Open Babel & Autodock
1498 suite Pipeline https://github.com/inpacdb/POAP
1500 * Pi Cluster Parallel Script First Fire
1501 https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/
1503 * How to Restore MySQL Logical Backup at Maximum Speed
1504 https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/
1506 * Bug fixes and man page updates.
1511 * --embed makes it possible to embed GNU parallel in a shell
1512 script. This is useful if you need to distribute your script to
1513 someone who does not want to install GNU parallel.
1515 * Parallelize Your Large Batches of Small Jobs
1516 https://amito.me/2018/02/Parallelize-Your-Large-Batches-of-Small-Jobs/
1518 * Klaatu expounds upon xargs and talks GNU parallel in episode 12x6
1519 http://gnuworldorder.info/
1521 * How to use parallel to speed up your work
1522 https://mike42.me/blog/how-to-use-parallel-to-speed-up-your-work
1524 * Transient compute clustering with GNU Parallel and sshfs
1525 https://dennismungai.wordpress.com/2018/02/06/transient-compute-clustering-with-gnu-parallel-and-sshfs/
1527 * Useful Examples of ffmpeg and GNU parallel on the command-line
1528 https://dennismungai.wordpress.com/2018/02/06/useful-examples-of-ffmpeg-and-gnu-parallel-on-the-command-line/
1530 * Data Science at the Command Line (Chapter 8.3)
1531 https://www.datascienceatthecommandline.com/
1533 * Bug fixes and man page updates.
1538 * bash / 병렬 https://code.i-harness.com/ko/docs/bash/2a1a
1540 * 15分钟神器gnu parallel 入门观止
1541 http://www.ezilin.com/2018/01/15gnu-parallel.html
1543 * How To Run Multiple Commands In Parallel on Linux
1544 https://www.slashroot.in/how-run-multiple-commands-parallel-linux
1546 * Bug fixes and man page updates.
1551 * env_parset for ash, dash, ksh, sh, zsh
1553 * Automatically create hostgroups if argument ends in @sshlogin
1555 * Tips for running jobs on your VM
1556 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1558 * Node-local scheduling
1559 https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
1561 * GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
1563 * GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
1565 * Using GNU Parallel
1566 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1568 * Bug fixes and man page updates.
1573 * Using GNU Parallel to speed up Google Cloud Infrastructure
1575 https://medium.com/@pczarkowski/using-gnu-parallel-to-speed-up-google-cloud-infrastructure-management-53e5c555ec05
1577 * What is gnu parallel
1578 http://wiki.chpc.ac.za/howto:bioinformatics:gnu-parallel
1580 * Parallel, Scripts, Clusters, & Easy Use
1581 https://chiefio.wordpress.com/2017/11/10/parallel-scripts-clusters-easy-use/
1583 * Bug fixes and man page updates.
1588 * Initial support for XDG Base Directory $XDG_* environment variables.
1590 * Validating half a million TIFF files. Part
1592 https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1594 * Turing data science class: Cluster computing
1595 https://www.turing.ac.uk/events/masterclass-cluster-computing/
1597 * Butlin:Unix for Bioinformatics - advanced tutorial
1598 https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
1600 * พยายามใช้ CPU ให้ครบทุก CORE
1601 https://veer66.wordpress.com/2017/09/02/use-multi-core/
1603 * Examples on using GNU Parallel
1604 https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
1606 * Bug fixes and man page updates.
1611 * Use '--limit myprog' to make a dynamic job limit. Just return 0 to
1612 spawn another job, 1 to not spawn another job, and 2 to kill the
1615 * PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
1618 * Download all of humble bundle books in parallel
1619 https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel
1621 * Bug fixes and man page updates.
1626 * --line-buffer no longer uses tempfiles. This is faster and makes it
1627 possible for a single process to output more data than there is free
1630 * Vote for GNU Parallel's community ads on
1631 http://meta.unix.stackexchange.com/a/4356/2972
1632 http://meta.askubuntu.com/a/16750/22307
1633 http://meta.serverfault.com/a/9040/45704
1635 * Edit images with GNU Parallel and ImageMagick
1636 https://fedoramagazine.org/edit-images-parallel-imagemagick/
1638 * Running Bash Commands in Parallel
1639 https://dzone.com/articles/running-bash-commands-in-parallel-1
1641 * Today I Learned: GNU parallel, plate tectonics
1642 https://medium.com/@nornagon/today-i-learned-gnu-parallel-plate-tectonics-9fcf24045e63
1644 * GNU Parallel Tutorial
1645 https://www.upf.edu/web/sct-sit/gnu-parallel-tutorial
1647 * Validating half a million TIFF files
1648 http://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1650 * Blender and GNU Parallel
1651 https://www.blendernation.com/2017/08/16/blender-gnu-parallel/
1653 * Quick Introduction to GNU Parallel
1654 https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1656 * A simple distributed animation render example using GNU Parallel
1657 https://gitlab.com/skororu/scripts
1659 * Do stuff on things, in parallel
1660 http://blogs.fluidinfo.com/terry/2017/08/05/do-stuff-on-things-in-parallel/
1662 * Bash And GNU Parallel NGS Bidniz
1663 http://ino.pm/outreach/presentations/2014/03/genomics-wranglers/index.html
1665 * Using for loop vs Gnu parallel for BLAST
1666 http://www.ettemalab.org/using-for-loop-vs-gnu-parallel-for-blast/
1668 * 并行rsync https://gxnotes.com/article/175866.html
1670 * Bug fixes and man page updates.
1675 * Vote for GNU Parallel's community ads on
1676 http://meta.unix.stackexchange.com/a/4356/2972
1677 http://meta.askubuntu.com/a/16750/22307
1678 http://meta.serverfault.com/a/9040/45704
1680 * GNU Parallel was cited in: Hayabusa: Simple and Fast Full-Text
1681 Search Engine for Massive System Log Data
1682 http://dl.acm.org/citation.cfm?id=3095788
1684 * コマンドの並列化を行える『GNU parallel』の個人的使い方まとめ
1685 https://orebibou.com/2017/07/%E3%82%B3%E3%83%9E%E3%83%B3%E3%83%89%E3%81%AE%E4%B8%A6%E5%88%97%E5%8C%96%E3%82%92%E8%A1%8C%E3%81%88%E3%82%8B%E3%80%8Egnu-parallel%E3%80%8F%E3%81%AE%E5%80%8B%E4%BA%BA%E7%9A%84%E4%BD%BF%E3%81%84/
1687 * How to play and play with thousands of digitized 78rpm records
1688 https://blog.archive.org/2017/07/10/how-to-play-and-play-with-78rpm-record-transfers/
1690 * 并行一个for循环 https://gxnotes.com/article/130363.html
1692 * RFC 8142: GeoJSON Text Sequences
1693 https://sgillies.net/2017/05/18/rfc-8142-geojson-text-sequences.html
1695 * Git auto fetch script I run every day
1696 https://lukas.zapletalovi.com/2017/07/git-auto-fetch-script-i-run-every-day.html
1698 * cores, cpus and threads
1699 http://crazyhottommy.blogspot.de/2017/07/cores-cpus-and-threads.html
1701 * Bug fixes and man page updates.
1706 * The command line can now contain \257 (Macron) or UTF characters
1709 * Vote for GNU Parallel's community ads on
1710 http://meta.unix.stackexchange.com/a/4356/2972
1711 http://meta.askubuntu.com/a/16750/22307
1712 http://meta.serverfault.com/a/9040/45704
1714 * Graph for overhead for 1000 jobs has been updated. It remains
1715 steadily at 3.5 ms per job on a 1.7 GHz machine
1716 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1718 * GNU Parallel was cited in: The topology of the directed clique
1719 complex as a network invariant
1720 https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
1722 * GNU Parallel was cited in: Improving Optical Character Recognition
1723 of Finnish Historical Newspapers with a Combination of Fraktur &
1724 Antiqua Models and Image
1725 http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
1727 * GNU Parallel was cited in: Parallel Execution of Structural Mechanic
1728 Tasks with Use of Small Supercomputers
1729 http://www.sciencedirect.com/science/article/pii/S1877705817324815
1731 * GNU Parallel was cited in: Integration of a Multilingual Preordering
1732 Component into a Commercial SMT Platform
1733 https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
1735 * Tips For Running Jobs On Your VM
1736 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1738 * Speed up ML model development with GNU Parallel
1739 https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
1741 * Parallelizing a Python Function for the Extremely Lazy
1742 http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
1745 http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
1747 * Bug fixes and man page updates.
1752 * --timeout can now use s=second,m=minute,h=hour,d=day.
1754 * --dr is now an alias for --dry-run.
1756 * Vote for GNU Parallel's community ads on
1757 http://meta.unix.stackexchange.com/a/4356/2972
1758 http://meta.askubuntu.com/a/16750/22307
1759 http://meta.serverfault.com/a/9040/45704
1761 * GNU Parallel was cited in: Feature Detection in Visual Cortex during
1762 Different Functional States
1763 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
1765 * GNU Parallel was cited in: From genotype to phenotype: inferring
1766 relationships between microbial traits and genomic components
1767 https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
1769 * GNU Parallel was cited in: Designing fecal microbiota transplant
1770 trials that account for differences in donor stool efficacy
1771 http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
1773 * GNU Parallel was cited in: Assessing the predictability of
1774 anharmonic vibrational modes at the example of hydroxyl groups - ad
1775 hoc construction of localised modes and the influence of structural
1776 solute–solvent motifs
1777 http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
1779 * GNU Parallel was cited in: Mapping Environmental Influences on
1781 ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
1783 * GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
1784 Glass Transition in One Dimension
1785 https://arxiv.org/pdf/1704.02257.pdf
1787 * GNU Parallel was cited in: Online Automatic Post-editing for MT in a
1788 Multi-Domain Translation Environment
1789 https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
1791 * GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
1792 moderate-resolution reflective solar bands against MODIS Aqua over
1794 http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
1796 * GNU Parallel was cited in: Scattering Networks: Efficient 2D
1797 Implementation And Application To Melanoma Classification
1798 http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
1800 * GNU Parallel was cited in: Genome-scale detection of positive
1801 selection in 9 primates predicts human-virus evolutionary conflicts
1802 http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
1804 * GNU Parallel is used in: Creates a speech dataset for deep learning
1805 https://github.com/jupiter126/Create_Speech_Dataset
1807 * GNU Parallel is used in: Parse and process the demixing secrets
1808 dataset (DSD100) https://github.com/faroit/dsdtools
1810 * First glance at the gnu parallel utility
1811 https://ibiscybernetics.com/blog/2017-04-05.html
1813 * Installing parallel from source
1814 https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
1816 * How to run command or code in parallel in bash shell under Linux or
1818 https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
1820 * Parallel Serial Jobs Using GNU Parallel
1821 http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
1823 * GNU Parallel or How to list millions of S3 objects
1824 https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
1826 * Which Is the Best Tool for Copying a Large Directory Tree Locally?
1827 http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
1829 * Bug fixes and man page updates.
1834 * --halt supports done in addition to success and fail.
1836 * parset will set variables in parallel in Bash.
1838 * Perl 5.6 on Irix is no longer supported.
1840 * Vote for GNU Parallel's community ads on
1841 http://meta.unix.stackexchange.com/a/4356/2972
1842 http://meta.askubuntu.com/a/16750/22307
1843 http://meta.serverfault.com/a/9040/45704
1845 * GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
1846 from transcriptomic data using MapReduce
1847 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
1849 * GNU Parallel was cited in: StrAuto: automation and parallelization
1850 of STRUCTURE analysis
1851 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
1853 * GNU Parallel was cited in: Trespassing the Boundaries: Labeling
1854 Temporal Bounds for Object Interactions in Egocentric Video
1855 https://128.84.21.199/pdf/1703.09026.pdf
1857 * GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
1859 * Using GNU Parallel
1860 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1862 * Find and xargs and parallel
1863 http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
1865 * Quick Introduction to GNU Parallel
1866 https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1868 * Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
1870 * Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
1872 * Bug fixes and man page updates.
1877 * --rpl can now take arguments by adding '(regexp)' in the replacement
1880 * Vote for GNU Parallel's community ads on
1881 http://meta.unix.stackexchange.com/a/4356/2972
1882 http://meta.askubuntu.com/a/16750/22307
1883 http://meta.serverfault.com/a/9040/45704
1885 * GNU Parallel was cited in: shmlast: An improved implementation of
1886 Conditional Reciprocal Best Hits with LAST and Python
1887 https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
1889 * GNU Parallel was cited in: Prediction of relativistic electron flux
1890 in the Earth’s outer radiation belt at geostationary orbit by
1892 https://link.springer.com/article/10.1134/S0016793217010108
1894 * GNU Parallel was cited in: Higher likelihood of multiple bit-flips
1895 due to neutron-induced strikes on logic gates
1896 https://arxiv.org/pdf/1612.08239.pdf
1898 * GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
1899 Calculation of Hybrid Classical and Quantum Free Energies
1900 http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
1902 * GNU Parallel was cited in: Learning string distance with smoothing
1903 for OCR spelling correction
1904 https://link.springer.com/article/10.1007/s11042-016-4185-5
1906 * GNU Parallel was cited in: The Breakdown of String Perturbation
1907 Theory for Many External Particles
1908 https://arxiv.org/pdf/1611.08003.pdf
1910 * GNU Parallel was cited in: Operations Research Applications in
1912 https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
1914 * GNU Parallel was cited in: Parallel Computing: GNU Parallel
1915 http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
1917 * Stig Sandbeck Mathisen: Change All The Passwords (Again)
1918 http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
1920 * Trabalhando como Paralelismo no Bash usando o GNU Parallel
1921 http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
1923 * GNU parallel と SQL*Loader 組み合わせ実行例
1924 https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
1926 * Bug fixes and man page updates.
1931 * env_parallel now supports /bin/sh, ash, dash.
1933 * --tee will pipe all data to all jobs. Used with --pipe/--pipepart
1934 and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
1935 {} | wc -l' ::: {0..9}
1937 * If --results {replstr} ends in /: save in dir. Otherwise save as
1938 file. Example: parallel --results {} echo {} ::: a b c
1940 * Vote for GNU Parallel's community ads on
1941 http://meta.unix.stackexchange.com/a/4356/2972
1942 http://meta.askubuntu.com/a/16750/22307
1943 http://meta.serverfault.com/a/9040/45704
1945 * GNU Parallel was cited in: Low-delay forwarding with multiple
1946 candidates for VANETs using multi-criteria decision making
1947 http://ieeexplore.ieee.org/document/7835961/
1949 * GNU Parallel was cited in: An Integrated Simulator and Dataset that
1950 Combines Grasping and Vision for Deep Learning
1951 https://arxiv.org/pdf/1702.02103.pdf
1953 * GNU Parallel was cited in: A Bayesian model selection approach for
1954 identifying differentially expressed transcripts from RNA sequencing
1955 data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
1957 * GNU Parallel was cited in: The impact of copy number variation on
1958 gout, and the apple genome
1959 https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
1961 * GNU Parallel was cited in: Reaction rates for reaction-diffusion
1962 kinetics on unstructured meshes
1963 http://aip.scitation.org/doi/10.1063/1.4975167
1965 * GNU Parallel was cited in: Modeling prediction error improves power
1966 of transcriptome-wide association studies
1967 http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
1969 * GNU Parallel was cited in: Proper experimental design requires
1970 randomization/balancing of molecular ecology experiments
1971 http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
1973 * GNU Parallel was cited in: Experiment-based thermal micromagnetic
1974 simulations of the magnetization reversal for ns-range clocked
1976 http://aip.scitation.org/doi/full/10.1063/1.4974021
1978 * GNU Parallel was cited in: The University of Edinburgh’s systems
1979 submission to the MT task at IWSLT
1980 http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
1982 * Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
1984 * Job: DevOps Engineer/Senior Systems Administrator in New York, New
1986 http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
1988 * Training in GNU Parallel:
1989 https://www.carc.unm.edu/education-outreach/workshops--training/
1991 * Training in GNU Parallel:
1992 http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
1994 * Batch Convert Images from PNG to JPEG
1995 http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
1997 * Accelerating Oxford Nanopore Basecalling
1998 http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
2000 * parallel и imagemagick в loop на bash
2001 https://www.linux.org.ru/forum/development/13190247
2003 * Bug fixes and man page updates.
2013 * sql now uses a temporary credentials file for MySQL to avoid
2016 * --sqlmaster and --sqlworker have been reworked.
2018 * --sqlworker only reads from the DBURL: any command and any arguments
2021 * --sqlmaster +DBURL will append different commands to the DBURL and
2022 not erase the table.
2024 * If --results contain a replacement string, no tree structure with
2025 args will be generated.
2027 * --fg --tmux or --fg --tmuxpane will connect to the tmux.
2029 * GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
2030 Classification, and Measurement
2031 https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
2033 * GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
2034 Social and Solitary Wild Bees Detects Associations with Eukaryote
2035 Parasites and New Viruses
2036 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
2038 * GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
2039 of Metric Temporal Logic
2040 http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
2042 * 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
2044 * GNU Parallel as a queuing system:
2045 http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
2047 * AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
2049 http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
2050 and https://youtu.be/PlTuJx4VnGw?t=30m16s
2052 * Bug fixes and man page updates.
2057 * --results foo.csv will save output as a CSV-file. Can be directly
2058 imported into R or LibreCalc.
2060 * When using --pipepart a negative --block-size is not interpreted as
2061 a block size but as the number of blocks each jobslot should have.
2063 * --sqlmaster/--sqlandworker will append jobs to the DBURL if the
2064 DBURL is prepended with +.
2066 * GNU Parallel was cited in: A cloud-based workflow to quantify
2067 transcript-expression levels in public cancer compendia
2068 http://www.nature.com/articles/srep39259
2070 * GNU Parallel was cited in: Determination of crystal structures of
2071 proteins of unknown identity using a marathon molecular replacement
2072 procedure: Structure of Stenotrophomonas maltophilia
2073 phosphate-binding protein
2074 https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
2076 * GNU Parallel was cited in: Large-scale benchmarking reveals false
2077 discoveries and count transformation sensitivity in 16S rRNA gene
2078 amplicon data analysis methods used in microbiome studies
2079 http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
2081 * GNU Parallel was cited in: Decomposing Images into Layers via
2083 https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
2085 * Transient compute clustering with GNU Parallel and sshfs
2086 https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
2088 * 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
2089 http://www.tecmint.com/linux-image-conversion-tools/
2091 * All's Fair in Love and Distributed Storage
2092 http://cohesity.com/blog/alls-fair-love-distributed-storage/
2094 * How can I use GNU Parallel to run a lot of commands in parallel
2095 https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
2097 * 정해영의 블로그 - JEONG Haeyoung's blog
2098 http://blog.genoglobe.com/2016/11/gnu-parallel.html
2100 * 在Linux下将PNG和JPG批量互转的四种方法
2101 http://os.51cto.com/art/201612/524182.htm
2103 * Running in parallel http://tomkimpson.com/howto/gnuparallel/
2105 * Taco Bell Parallel Programming
2106 https://giorgos.sealabs.net/taco-bell-parallel-programming.html
2108 * Bug fixes and man page updates.
2113 * --record-env can now be used with env_parallel for bash, ksh, pdksh,
2116 * GNU Parallel was cited in: An improved implementation of Conditional
2117 Reciprocal Best Hits with LAST and Python
2118 https://pypi.python.org/pypi/shmlast/1.0.3
2120 * GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
2122 http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
2124 * GNU/Parallel – Run multiple commands simultaneously
2125 https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
2127 * Tutorial: Parallel web scraping with CasperJS and GNU Parallel
2128 http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
2130 * Bug fixes and man page updates.
2135 * First command no longer gets stdin as it causes unpredictable issues.
2137 * GNU Parallel was cited in: Efficiently parallelized modeling of
2138 tightly focused, large bandwidth laser pulses
2139 https://arxiv.org/pdf/1609.08146v1.pdf
2141 * How to crunch lots of geodata in parallel
2142 http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
2144 * GNU parallel is my new toaster
2145 http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
2147 * Bug fixes and man page updates.
2152 * parcat - cat files or fifos in parallel
2154 * GNU Parallel was cited in: Velocity: A Netflow Based Optimized
2156 https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
2158 * GNU Parallel was cited in: Viral deep sequencing needs an adaptive
2159 approach: IRMA, the iterative refinement meta-assembler
2160 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
2162 * Using GNU Parallel and ImageMagick for Conversions
2163 https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2165 * Training in GNU Parallel
2166 http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
2168 * Chown Ceph OSD data directory using GNU Parallel
2169 http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
2171 * FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
2173 * dDocent: A guide to ddRAD sequencing
2174 https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
2176 * SOFTWARE GNU Parallel
2177 http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
2179 * Bug fixes and man page updates.
2184 * --tmuxpane opens jobs in panes in tmux. Useful if you want to
2185 monitor progress of less than 100 simultaneous jobs.
2187 * --linebuffer now treats \r as line ending, too.
2189 * Perl changes forces use of floats to be given with leading zero, so
2192 * --xapply renamed to --link.
2194 * Support for pdksh will fade until someone packages it for Ubuntu 16.
2196 * GNU Parallel was cited in: Exome sequencing of geographically
2197 diverse barley landraces and wild relatives gives insights into
2198 environmental adaptation
2199 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
2201 * GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
2202 Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
2204 * Easy parallelization with GNU parallel
2205 http://mpharrigan.com/2016/08/02/parallel.html
2207 * Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
2209 http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
2212 http://www.manitou-mail.org/blog/2016/07/parallel-import/
2214 * Large file batch processing using NodeJs and GNU Parallel
2215 http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
2217 * Bug fixes and man page updates.
2222 * env_parallel is now ready for wider testing. It is still beta
2225 * env_parallel is heavily modified for all shells and testing has been
2228 * Selectively choosing what to export using --env now works for
2229 env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
2231 * --round-robin now gives more work to a job that processes faster
2232 instead of same amount to all jobs.
2234 * --pipepart works on block devices on GNU/Linux.
2236 * GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
2237 Introns for Phylogenetics from High-Throughput Sequencing Reads
2238 Using Target Enrichment
2239 http://www.bioone.org/doi/full/10.3732/apps.1600016
2241 * GNU Parallel was cited in: StrAuto - Automation and Parallelization
2242 of STRUCTURE Analysis
2243 http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
2245 * GNU Parallel was cited in: Tools and techniques for computational
2247 http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
2249 * GNU Parallel was cited in: FlashPCA: fast sparse canonical
2250 correlation analysis of genomic data
2251 http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
2253 * GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
2254 Fine-tuning Query Expansion and Unification Strategies
2255 http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
2257 * GNU Parallel was cited in: The Evolution and Fate of
2258 Super-Chandrasekhar Mass White Dwarf Merger Remnants
2259 http://arxiv.org/pdf/1606.02300.pdf
2261 * GNU Parallel was cited in: Evaluation of Coastal Scatterometer
2263 https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
2265 * GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
2267 * The iconv slurp misfeature
2268 http://www.openfusion.net/linux/iconv_slurp_misfeature
2270 * แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
2272 * Bug fixes and man page updates.
2277 * $PATH can now be exported using --env PATH. Useful if GNU Parallel
2278 is not in your path on remote machines.
2280 * If --block is left out, --pipepart will use a block size that will
2281 result in 10 jobs per jobslot.
2283 * The cookie from 2016-01-04 was won by Morgan Rodgers on the
2284 2016-06-06 after 5 months.
2286 * Vote for GNU Parallel's community ad on
2287 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2289 * GNU Parallel was cited in: Genotypic Resistance Tests Sequences
2290 Reveal the Role of Marginalized Populations in HIV-1 Transmission in
2291 Switzerland http://www.nature.com/articles/srep27580
2293 * GNU Parallel was cited in: A Deep-Learning Approach for Operation of
2294 an Automated Realtime Flare Forecast
2295 https://arxiv.org/pdf/1606.01587.pdf
2297 * Unix parallel: Populating all the USB sticks
2298 http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
2300 * GNU Parallel is a fantastic utility https://www.dray.be/parallel/
2302 * Combining a large number of VCF files
2303 https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
2305 * Useful Scraping Techniques
2306 http://blog.apps.npr.org/2016/06/17/scraping-tips.html
2308 * Tools of the trade
2309 http://onox.com.br/2015/05/tools-of-the-trade/#more-198
2311 * Armslist scraper https://github.com/nprapps/armslist-scraper/
2313 * Bug fixes and man page updates.
2318 * niceload --net pauses the program if the internet connection is
2321 * Vote for GNU Parallel's community ad on
2322 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2324 * Updated speed comparison between versions
2325 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
2327 * GNU Parallel was cited in: Improving computation efficiency by
2328 parallel programming
2329 http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
2331 * GNU Parallel was cited in: A supernova feedback implementation for
2332 the astrophysical simulation software Arepo
2333 https://arxiv.org/abs/1604.06071
2335 * GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
2336 resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
2338 * GNU Parallel was cited in: Host-pathogen co-evolution and the
2339 emergence of broadly neutralizing antibodies in chronic infections
2340 https://arxiv.org/abs/1512.06296
2342 * GNU Parallel was cited in: Pacific People, Metabolic Disease and
2343 Evolutionary Processes: a mitochondrial DNA study
2344 https://otago.ourarchive.ac.nz/handle/10523/6340
2346 * GNU Parallel was cited in: The effect of domain modeling on
2347 efficiency of planning: Lessons from the Nomystery domain
2348 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
2350 * GNU Parallel was cited in: Oops, my tests broke the build: An
2351 analysis of Travis CI builds with GitHub
2352 https://peerj.com/preprints/1984/
2354 * GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
2355 Distinct Set of Genomic Properties Over 40 Million Years of
2356 Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
2358 * GNU Parallel was cited in: An Empirical Comparison of Neural
2359 Architectures for Reinforcement Learning in Partially Observable
2361 http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
2363 * GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
2364 Management in Requester-wins Hardware Transactional Memory
2365 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
2367 * GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
2368 Mutation-Induced Stability Changes with Feature-Based Multiple
2370 http://www.sciencedirect.com/science/article/pii/S0022283616000310
2372 * GNU Parallel was cited in: A new orthology assessment method for
2373 phylogenomic data: Unrooted Phylogenetic Orthology
2374 http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
2375 https://github.com/ballesterus/UPhO
2377 * GNU Parallel was cited in: Distinctive Interest Point Selection for
2378 Efficient Near-duplicate Image Retrieval
2379 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
2381 * GNU Parallel was cited in: The Evolution of C Programming Practices:
2382 A Study of the Unix Operating System 1973–2015
2383 https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
2384 thumbnail graphs I have ever seen scattered all over the text)
2386 * GNU Parallel was cited in: Data processing pipeline for serial
2387 femtosecond crystallography at SACLA
2388 http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
2390 * GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
2391 Dynamics http://arxiv.org/pdf/1512.01460.pdf
2393 * GNU Parallel was cited in: Genomic legacy of the African cheetah,
2395 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
2397 * GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
2398 Characterization of IPv6 Network Security Policy
2399 http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
2401 * GNU Parallel was cited in: Comprehensive Annotation of the
2402 Parastagonospora nodorum Reference Genome Using Next-Generation
2403 Genomics, Transcriptomics and Proteogenomics
2404 http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
2406 * GNU Parallel was cited in: How attention influences perceptual
2407 decision making: Single-trial EEG correlates of drift-diffusion
2408 model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
2410 * GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
2411 Using High-Throughput Sequencing Reads
2412 http://repository.upenn.edu/edissertations/1460/
2414 * GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
2415 Processing with Associative Transducers
2416 http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
2418 * GNU Parallel was cited in: PVAIR: Partial Variable Assignment
2419 InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
2421 * GNU Parallel was cited in: Comparative Cladistics: Fossils,
2422 Morphological Data Partitions and Lost Branches in the Fossil Tree
2423 of Life http://opus.bath.ac.uk/43955/
2425 * GNU Parallel was cited in: Shannon: An Information-Optimal de
2426 NovoRNA-Seq Assembler
2427 http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
2429 * GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
2430 Estimation for Coastal Ocean Modeling
2431 https://repositories.lib.utexas.edu/handle/2152/32435
2433 * GNU Parallel was cited in: Computational Design of DNA-Binding
2435 http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
2437 * GNU Parallel was cited in: Reference genotype and exome data from an
2438 Australian Aboriginal population for health-based research
2439 http://www.nature.com/articles/sdata201623
2441 * GNU Parallel was cited in: Do aye-ayes echolocate?
2442 http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
2444 * GNU Parallel was cited in: Functional enrichments of disease
2445 variants across thousands of independent loci in eight diseases
2446 http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
2448 * GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
2449 microbial trait analyzer
2450 http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
2452 * GNU Parallel was mentioned in: Fast Playback Framework for Analysis
2453 of Ground-Based Doppler Radar Observations Using MapReduce
2455 http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
2457 * NCBI blast tutorial
2458 https://github.com/enormandeau/ncbi_blast_tutorial
2460 * Distributed Preservation Made Simple
2461 https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
2463 * Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
2465 * Bug fixes and man page updates.
2470 * :::+ and ::::+ work like ::: and :::: but links this input source to
2471 the previous input source in a --xapply fashion. Contrary to
2472 --xapply values do not wrap: The shortest input source determines
2475 * --line-buffer --keep-order now outputs continously from the oldest
2476 job still running. This is more what you would expect than the
2477 earlier behaviour where --keep-order had no effect with
2480 * env_parallel supports tcsh, csh, pdksh. In fish it now supports
2481 arrays. In csh/tcsh it now supports variables, aliases, and arrays
2482 with no special chars. In pdksh it supports aliases, functions,
2483 variables, and arrays.
2485 * Function exporting on Mac OS X works around old Bash version.
2487 * Better CPU detection on OpenIndiana.
2489 * GNU Parallel was cited in: Automatic Methods for Assisted
2491 https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
2493 * GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
2494 for Natural SUSY with a R-Sneutrino LSP
2495 http://arxiv.org/pdf/1603.06130.pdf
2497 * GNU Parallel was cited in: An Operational Radiometric Landsat
2498 Preprocessing Framework for Large-Area Time Series Applications
2499 https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
2501 * A basic demo of how GNU Parallel can speed up execution of commands
2502 https://www.youtube.com/watch?v=kl8LO2jcvMc
2504 * qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
2506 * FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
2508 * Parallel Processing with Catmandu
2509 https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
2512 http://staypython.blogspot.dk/2016/04/gnu-parallel.html
2514 * Bug fixes and man page updates.
2519 * env_parallel is a function that exports the environment (functions,
2520 aliases, variables, and arrays) to GNU Parallel. Run 'man
2521 env_parallel' for details.
2523 * niceload --prg now searches for substrings if no process with the
2526 * GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
2527 Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
2529 * GNU Parallel was mentioned (with wrong citation) in: Dual Level
2530 Parallel Computations for LargeScale High-Fidelity Database to
2531 Design Aerospace Vehicles
2532 http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
2534 * Using ‘Parallel’ in Unix
2535 https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
2537 * JPEG Squish uses (and co-distributes) GNU Parallel:
2538 http://dantidswell.co.uk/jpeg-squish/
2540 * Bug fixes and man page updates.
2545 * Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
2546 http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
2547 http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2548 http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
2550 * Daily Quick Tip: parallel
2551 https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
2553 * Downloading a list of URLs
2554 http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
2556 * Using GNU Parallel and ImageMagick for Conversions
2557 http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2559 * Running bash commands in parallel
2560 http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
2562 * parallel processing in PDAL
2563 https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
2565 * A Million Text Files And A Single Laptop
2566 http://randyzwitch.com/gnu-parallel-medium-data/
2568 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
2569 http://www.slideshare.net/koji_matsuda/gnu-parallel
2571 * Bug fixes and man page updates.
2576 * --sql DBURL uses DBURL as storage for jobs and output. It does not
2577 run any jobs so it requires at least one --sqlworker. DBURL must
2580 * --sqlworker DBURL gets jobs from DBURL and stores the result back to
2583 * --sqlandworker is a shorthand for --sql and --sqlworker.
2585 * --sqlworker requires the output of a single job to fit in memory.
2587 * --results now also saves a file called 'seq' containing the sequence
2590 * If $PARALLEL_ENV is a file, then that file will be read into
2593 * man parallel_tutorial has been given an overhaul.
2595 * --workdir now accepts replacementstrings.
2597 * GNU Parallel was cited in: Possum - A Framework for
2598 Three-Dimensional Reconstruction of Brain Images from Serial
2599 Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
2601 * GNU Parallel was cited in: A Genetic Algorithm for the selection of
2602 structural MRI features for classification of Mild Cognitive
2603 Impairment and Alzheimer's Disease
2604 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
2606 * GNU Parallel was cited in: The Effect of Domain Modeling on
2607 Performance of Planning Algorithms
2608 http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
2610 * Plotting time tables for jobs run by GNU Parallel
2611 https://github.com/ziotom78/plot_joblog
2613 * GNU Parallel was used in: Mission Impossible: you have 1 minute to
2614 analyze the Ebola Genome https://www.biostars.org/p/119397
2616 * GNU Parallel is used in LAST: http://last.cbrc.jp/
2618 * Distributed Log Search Using GNU Parallel
2619 http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
2621 * Bug fixes and man page updates.
2626 * --transfer is now an alias for --transferfile {}.
2628 * --transferfile works like --transfer, but takes an argument like
2629 --return. This makes it possible to combine transferring files
2630 with multiple input sources: parallel -S server --tf {1} wc {2}
2631 {1} ::: * ::: -l -w -c
2633 * total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
2634 $_=total_jobs() =}' ::: {1..50}
2636 * GNU Parallel was cited in: Evolution and Learning in Heterogeneous
2638 http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
2640 * GNU Parallel was cited in: Achieving Consistent Doppler Measurements
2641 from SDO/HMI Vector Field Inversions
2642 http://arxiv.org/pdf/1511.06500.pdf
2644 * Flo uses GNU Parallel: https://github.com/wurmlab/flo
2646 * 使用 GNU parallel 來平行運算
2647 http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
2649 * Bug fixes and man page updates.
2654 * GNU Parallel packaged for CERN CentOS:
2655 http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
2657 * GNU Parallel was cited in: The Outer Solar System Origins Survey:
2658 I. Design and First-Quarter Discoveries
2659 http://arxiv.org/pdf/1511.02895.pdf
2661 * GNU Parallel was cited in: Contrasting genetic architectures of
2662 schizophrenia and other complex diseases using fast
2663 variance-components analysis
2664 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
2666 * GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
2667 using Support Vector Machines
2668 http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
2670 * GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
2671 Using Brownian Dynamics, Molecular Dynamics and Milestoning
2672 http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
2674 * GNU Parallel was cited in: A Detailed Characterization of Errors in
2675 Logic Circuits due to Single-Event Transients
2676 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
2678 * GNU Parallel was cited in: Arabic Speaker Emotion Classification
2679 Using Rhythm Metrics and Neural Networks
2680 http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
2682 * GNU Parallel was cited in: Stride Search: a general algorithm for
2683 storm detection in high resolution climate data
2684 http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
2686 * GNU Parallel was cited in: Decomposing Digital Paintings into Layers
2687 via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
2689 * GNU Parallel was cited in: Structure and evolutionary history of a
2690 large family of NLR proteins in the zebrafish
2691 http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
2693 * GNU Parallel was cited in: Evolution of movement strategies under
2694 competitive interactions
2695 http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
2697 * Automating large numbers of tasks
2698 https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
2700 * Max out your IOPs with GNU Parallel
2701 http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
2703 * Bug fixes and man page updates.
2708 * --plus makes it possible to use {##} as a shorthand for
2709 {= $_=$Global::JobQueue->total_jobs() =} which gives the the number
2710 of jobs to run in total.
2712 * {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
2715 * GNU Parallel is now mostly compatible with lsh
2716 (http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
2717 autossh (http://www.harding.motd.ca/autossh/).
2719 * --workdir ... now also works when run locally.
2721 * GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
2722 regular graph http://arxiv.org/pdf/1509.05933.pdf
2724 * GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
2726 http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html
2728 * GNU Parallel is used in TraitAR:
2729 https://testpypi.python.org/pypi/traitar/0.1.4
2731 * A parallel and fast way to download multiple files
2732 http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html
2734 * Usar GNU Parallel para aumentar el rendimiento de tus scripts
2735 http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/
2737 * Bug fixes and man page updates.
2742 * GNU Parallel was cited in: Flexible Modeling of Epidemics with an
2743 Empirical Bayes Framework
2744 http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382
2746 * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
2747 https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf
2749 * GNU Parallel was cited in: A Scalable Parallel Implementation of
2750 Evolutionary Algorithms for Multi-Objective Optimization on GPUs
2751 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074
2753 * GNU Parallel was cited in: How Can We Measure the Similarity Between
2754 Résumés of Selected Candidates for a Job?
2755 https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job
2757 * GNU Parallel was cited in: Interplay of cell dynamics and epithelial
2758 tension during morphogenesis of the Drosophila pupal wing
2759 http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf
2761 * Third-party selling GNU Parallel T-shirts
2762 http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html
2764 * Joys of gnu parallel
2765 http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/
2767 * Crop and resize images with bash and ImageMagick
2768 https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/
2770 * Three Ways to Script Processes in Parallel
2771 http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/
2773 * What It Looks Like to Process 3.5 Million Books
2774 http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/
2776 * Bug fixes and man page updates.
2781 * If $job->skip() is called in {= =} the job will not be run.
2783 * @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
2784 $_="j" =}' ::: 1 2 3 ::: 4 5 6
2786 * Version of GNU Parallel that uses PostgreSQL as backend
2787 https://github.com/stephen-fralich/parallel-sql/
2789 * SpeedSeq: ultra-fast personal genome analysis and interpretation
2790 http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html
2792 * GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep
2794 * Who actually reads the code?
2795 http://www.fsf.org/blogs/community/who-actually-reads-the-code
2797 * Introduction to GNU Parallel
2798 http://erictleung.com/2015/08/06/intro-to-gnu-parallel/
2800 * ¿Alguien se lee el código?
2801 http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html
2803 * ¿Quién se lee el código fuente?
2804 https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/
2806 * Distribution des traitements avec GNU Parallel
2807 http://blog.inovia-conseil.fr/?p=226#4
2809 * Эксперимент по проверке, читают ли код открытых проектов
2810 http://www.opennet.ru/opennews/art.shtml?num=42718
2812 * 多核心主機搭配 GNU parallel
2813 http://blog.zeroplex.tw/2015/08/gnu-parallel.html
2815 * Bug fixes and man page updates.
2820 * If a record fits in a block, --block only reads upto the size of
2821 --block. If not: --block reads a full --block more.
2823 * Due to widely spread distributions still using --tollef even after a
2824 year of being retired following a year of being obsolete, --tollef
2825 now gives an error unless used with --gnu.
2827 * --nice now uses a perl wrapper instead of the nice command.
2829 * Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
2832 * A parser for GNU Parallel --joblog files:
2833 https://github.com/harryjubb/joblog
2835 * GNU Parallel was cited in: Dynamical formation & scattering of
2836 hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
2837 collisions http://arxiv.org/pdf/1507.03593.pdf
2839 * GNU Parallel was cited in: A Fast Compiler for NetKAT
2840 http://arxiv.org/pdf/1506.06378.pdf
2842 * GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
2844 http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
2846 * GNU Parallel was used in: Somatic mutation calling from the matched
2847 tumor-normal exome-sequencing
2848 http://fafner.meb.ki.se/biostatwiki/somac/
2850 * Parallel Processing from the Command Line
2851 https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
2853 * Using GNU Parallel to speed up network operations
2854 http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
2856 * Crawl faster with "parallel" - but how fast?
2857 http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
2859 * Simultaneously benchmark many URLs with ApacheBench and GNU parallel
2860 https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
2862 * Bug fixes and man page updates.
2867 * --halt has been rewritten completely. You can now combine
2868 percentages with success or fail. See the man page.
2870 * Exit values 102..254 have been removed. 101 means more than 100 jobs
2873 * Killing through --timeout, --memfree, or --halt is now done as a
2876 * --termseq determines which signals are sent when a job is killed.
2878 * An empty argument would previously cause no string to be
2879 inserted. This is now changed to '' being inserted, thus prepending
2880 a space to the output of: parallel echo {} b ::: ''
2882 * $PARALLEL_ENV can now be set to an environment prepending the
2883 command. Used in env_parallel as mentioned in the manpage.
2885 * --retry-failed will retry all failed jobs in a joblog. It will
2886 ignore any command given.
2888 * --ssh and $PARALLEL_SSH can be used to set the command used for
2889 ssh. The command is assumed to behave the same way as ssh.
2891 * --fifo now works in csh, too.
2893 * Q(...) can be used in {= =} to shell quote a string.
2895 * GNU Parallel was cited in: DockBench: An Integrated Informatic
2896 Platform Bridging the Gap between the Robust Validation of Docking
2897 Protocols and Virtual Screening Simulations
2898 http://www.mdpi.com/1420-3049/20/6/9977
2900 * GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
2902 http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
2904 * GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
2905 scattering and resonance calculations
2906 http://arxiv.org/pdf/1505.07691.pdf
2908 * GNU Parallel was cited in: A quantitative assessment of the Hadoop
2909 framework for analyzing massively parallel DNA sequencing data
2910 http://link.springer.com/article/10.1186/s13742-015-0058-5
2912 * GNU Parallel was cited in: A composite genome approach to identify
2913 phylogenetically informative data from next-generation sequencing
2914 http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
2916 * GNU Parallel is used in: taxator-tk
2917 http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
2919 * GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
2921 * GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
2923 * GNU Parallel is used in: A Fingerprint Identification System
2924 https://curve.carleton.ca/system/files/theses/28733.pdf
2926 * Job ad asking for GNU Parallel experience:
2927 http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
2929 * Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
2931 * Bug fixes and man page updates.
2936 * Security: The security issue for --sshlogin + --fifo/--cat has been
2937 fixed. Thereby all issues with
2938 http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
2941 * Security: After further security analysis the issue fixed in
2942 20150422 also fixed the problem for --tmux.
2944 * GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
2945 coordinated transcriptional regulation in gene expression
2947 http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
2949 * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
2950 Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
2951 Metagenomics and RNA-seq
2952 http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
2954 * GNU Parallel was cited in: Sequencing the cap-snatching repertoire
2955 of H1N1 influenza provides insight into the mechanism of viral
2956 transcription initiation
2957 http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
2959 * GNU Parallel was cited in: Genome assembly using Nanopore-guided
2960 long and error-free DNA reads
2961 http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
2963 * GNU Parallel was used (unfortunately with wrong citation) in:
2964 Comparing the CarbonTracker and TM5-4DVar data assimilation systems
2965 for CO2 surface flux inversions
2966 http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
2968 * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
2969 https://bitbucket.org/srp33/gsoa
2971 * A Quick and Neat :) Orchestrator using GNU Parallel
2972 http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
2974 * Execute commands on multiple computers using GNU Parallel (setting
2975 up a cluster on the cheap)
2976 https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
2978 * Functions and GNU parallel for effective cluster load management
2979 http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
2981 * Use parallel processing to save time importing databases
2982 http://drupalsun.com/node/41854
2984 * Run multiple ssh commands in parallel with GNU Parallel
2985 http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
2987 * Importing huge databases faster
2988 https://www.lullabot.com/blog/article/importing-huge-databases-faster
2990 * Parallel? Gnu parallel! https://debian.pro/1834
2992 * Bug fixes and man page updates.
2997 New in this release:
2999 * Security fix. An attacker on the local system could make you
3000 overwrite one of your own files with a single byte. The problem
3001 exist when you use --compress or --tmux or --pipe or --cat or
3002 --fifo. The attacker must figure out the randomly chosen file name
3003 and create a symlink within a time window of 15 ms.
3005 * --shuf will generate all jobs, and shuffle them before running
3006 them. This is useful to get a quick preview of the results before
3007 running the full batch.
3009 * GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
3011 * GNU Parallel was cited in: Scaling Machine Learning for Target
3012 Prediction in Drug Discovery using Apache Spark
3013 https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
3015 * GNU Parallel was cited in: Bayesian inference of protein structure
3016 from chemical shift data https://peerj.com/articles/861/
3018 * GNU Parallel was cited in: Toward Enhanced Metadata Quality of
3019 Large-Scale Digital Libraries: Estimating Volume Time Range
3020 https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
3022 * GNU Parallel was cited in: Experimental study on the Wind Farm
3023 Substation Cable Installation Problem
3024 http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
3026 * GNU Parallel was used in: https://github.com/KAPPS-/landsat-gifworks
3028 * GNU Parallel was used in: https://github.com/exascience/elprep
3030 * GNU Parallel was used in:
3031 http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
3033 * GNU Parallel was used in:
3034 http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
3036 * GNU Parallel was used in: Rapid haploid SNP calling
3037 https://github.com/tseemann/snippy
3039 * Pictures and Metadata
3040 http://www.ozzy.no/2015/02/05/pictures-and-metadata/
3042 * Task automation with bash and parallel
3043 https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
3045 * How To: Speed Up File Transfers in Linux using RSync with GNU
3047 http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
3049 * Mirroring a Git Repository
3050 https://avacariu.me/articles/mirroring-a-git-repository.html
3052 * Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
3053 https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
3056 http://www.zhihu.com/question/29257300
3058 * Bug fixes and man page updates.
3063 New in this release:
3065 * --number-of-cores respects 'taskset' on GNU/Linux.
3067 * --joblog --pipe gives the data send and received in the log.
3069 * GNU Parallel was tested to support 100 GB sized records in --pipe. A
3070 few bugs was fixed to support >2 GB records. It works, but is rather
3073 * GNU Parallel was cited in: RIG: Recalibration and Interrelation of
3074 genomic sequence data with the GATK
3075 http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
3077 * GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
3078 Improving metagenomic analysis with high performance classification
3079 and wide taxonomic attachment
3080 http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
3082 * GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
3083 shaped by declining effective population size
3084 http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
3086 * GNU Parallel was cited in: Evidence for DCO+ as a probe of
3087 ionization in the warm disk surface
3088 http://arxiv.org/pdf/1503.02659.pdf
3090 * GNU Parallel was cited in: De novo assembly and annotation of the
3091 Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
3092 from raw genomic reads and comparative analysis with the yellow
3093 fever mosquito (Aedes aegypti)
3094 http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
3096 * GNU Parallel was cited in: A General Approach to Network
3097 Configuration Analysis
3098 http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
3100 * GNU Parallel was cited in: Scrimer: designing primers from
3102 http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
3104 * GNU Parallel was cited in: Efficient Retrieval of Key Material for
3105 Inspecting Potentially Malicious Traffic in the Cloud
3106 http://sacko.uk/pdf/2015.1.pdf
3108 * GNU Parallel will be presented at Strataconf: Poor Man's Parallel
3110 http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
3112 * GNU Parallel was used in:
3113 https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
3115 * GNU Parallel was used in: https://github.com/martymac/fpart
3117 * GNU Parallel was used in:
3118 https://github.com/hoytak/diabetic-retinopathy-code
3120 * GNU Parallel was used in:
3121 https://github.com/mehmattski/HybSeqPipeline
3123 * GNU Parallel was used in:
3124 http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
3126 * Using GNU Parallel on a Raspberry Pi cluster:
3127 http://www.dcglug.org.uk/cluster-progress/
3129 * An introduction to vector tiling and map reduce in postgis:
3130 http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
3132 * Running scripts in parallel with GNU Parallel:
3133 http://code.jasonbhill.com/2015/03/
3135 * Mahout: Parallelising the creation of DecisionTrees:
3136 http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
3138 * High-Performance Scientific Computing: Running serial jobs in
3140 https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
3142 * Parallel cardinality on your laptop
3143 https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
3145 * Experiments about a better locate using grep
3146 http://a3nm.net/blog/better_locate.html
3148 * Homework with GNU Parallel:
3149 https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
3151 * Parallel - Jobs in Skripten parallelisieren:
3152 https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
3154 * GNU Parallel, czyli 100% użycia procesora
3155 http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
3157 * Bug fixes and man page updates.
3162 * --tmux has gotten a major overhaul.
3164 * GNU Parallel was cited in: RaftLib: A C++ Template Library for High
3165 Performance Stream Parallel Processing
3166 http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
3168 * GNU Parallel was cited in: Quantifying properties of hot and dense
3169 QCD matter through systematic model-to-data comparison
3170 http://arxiv.org/pdf/1502.00339.pdf
3172 * GNU Parallel was cited in: Towards Collaborative Exploration and
3173 Analysis of Big Data from Mars: A Noachis Terra Case Study
3174 http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
3176 * GNU Parallel was used (unfortunately with wrong citation) in:
3177 Performance and Scaling Comparison Study of RDBMS and NoSQL
3179 http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
3181 * GNU Parallel was used (unfortunately without citation) in: Parallel
3182 Implementation of Big Data Pre-Processing Algorithms for Sentiment
3183 Analysis of Social Networking Data
3184 http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
3186 * GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
3187 Ultra-fast personal genome analysis and interpretation
3188 http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
3190 * Zip Folders with GNU Parallel
3191 http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
3193 * Using GNU Parallel with Freesurfer
3194 http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
3196 * GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
3198 * Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
3200 * Bug fixes and man page updates.
3205 * Remote jobs now send stderr (standard error) to stderr (standard
3206 error) instead of stdout (standard output).
3208 * Remote execution command is now packed using base64 encoded
3209 bzip2. This means that big environments (app. 100 KB) can be
3210 transferred. This change makes remote execution alpha quality.
3212 * --semaphoretimeout now takes a negative value. This means give up if
3213 the semaphore is not gotten within the timeout.
3215 * --halt -1 and -2 now means halt if a job succeeds (so the opposite
3218 * --no-keep-order will reverse --keep-order.
3220 * Bash's second fix of shellshock caused --env to break again when
3221 exporting functions. This has been fixed again.
3223 * A semibig refactoring of big functions. All non-trivial functions
3224 are now less than 100 lines. The refactoring makes this release beta
3227 * A description of the design decisions for GNU Parallel can be found
3228 in 'man parallel_design'.
3230 * A bug fix in replacement strings caused rewrite of the replacement
3231 function. This makes use of replacement strings alpha quality.
3233 * GNU Parallel was cited in: Improving Energy and Performance with
3234 Spintronics Caches in Multicore Systems
3235 http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
3237 * GNU Parallel was cited in: Parallel post-processing with MPI-Bash
3238 http://dl.acm.org/citation.cfm?id=2691137
3240 * GNU Parallel was cited in: Distinguishing cause from effect using
3241 observational data: methods and benchmarks
3242 http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
3244 * GNU Parallel was cited in: Data Science at the Command Line
3245 http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
3247 * GNU Parallel was cited in: Resolution of Genetic Map Expansion
3248 Caused by Excess Heterozygosity in Plant Recombinant Inbred
3249 Populations http://www.g3journal.org/content/4/10/1963.full.pdf
3251 * GNU Parallel was cited in: Bayesian Inference of Protein Structure
3252 from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
3254 * GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
3255 in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
3257 * GNU Parallel was cited in: Computação Verde na Camada de Aplicação
3258 https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
3260 * GNU Parallel was cited in: Frameshift alignment: statistics and
3261 post-genomic applications
3262 http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
3264 * GNU Parallel was cited in: Towards Recommender Engineering Tools and
3265 Experiments for Identifying Recommender Differences
3266 http://elehack.net/research/thesis/mde-thesis.pdf
3268 * GNU Parallel was cited in: Speaker Environment Classification Using
3269 Rhythm Metrics in Levantine Arabic Dialect
3270 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
3272 * GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
3273 http://arxiv.org/pdf/1501.02155.pdf
3275 * GNU Parallel was cited in: Allocation Policy Analysis for Cache
3276 Coherence Protocols for STT-MRAM-based caches
3277 http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
3279 * GNU Parallel was cited in: Using Trusted Platform Module for
3280 securing virtual environment access in Cloud
3281 http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
3283 * GNU Parallel was cited in: Weakly Supervised Learning for
3284 Compositional Sentiment Recognition
3285 http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
3287 * GNU Parallel was cited in: Agility and Performance in Elastic
3288 Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
3290 * GNU Parallel was used (unfortunately without citation) in: Large
3291 Scale Author Name Disambiguation in Digital Libraries
3292 http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
3294 * GNU Parallel is used in BEDOPS:
3295 https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
3297 * Job ad asking for GNU Parallel skills:
3298 http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
3300 * GNU Parallel: Open Source For You (OSFY) magazine, October 2013
3302 http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
3304 * Multithreaded Encryption and Compression
3305 http://www.krazyworks.com/multithreaded-encryption-and-compression/
3307 * GNU Parallel on OSX and Linux
3308 https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
3310 * How to build gnu parallel from source on Ubuntu PC?
3311 http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
3313 * GNU parallel for openaddr-process-one
3314 https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
3316 * From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
3318 * Software Development Tooling
3319 http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
3321 * コマンドを並列に実行するGNU parallelがとても便利
3322 http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
3324 * Bug fixes and man page updates.
3329 * Remote systems can be divided into hostgroups (e.g. web and db) by
3330 prepending '@groupname/' to the sshlogin. Multiple groups can be
3331 given by separating groups with '+'. E.g. @web/www1 @web+db/www2
3334 * Remote execution can be restricted to servers that are part of one
3335 or more groups by '@groupname' as an sshlogin. Multiple groups can
3336 be given by separating groups with '+'. E.g. -S @web or -S @db+web
3338 * With --hostgroup you can restrict arguments to certain hostgroups by
3339 appending '@groupname' to the argument. Multiple groups can be
3340 given by separating groups with '+'. E.g. my_web_arg@web
3341 db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
3342 developing a prototype for this.
3344 * GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
3345 Massively Parallel Sequencing Data Analysis using Hadoop
3346 http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
3348 * GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
3349 the Histological Quantification of Whole Slide Images
3350 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
3352 * GNU Parallel was cited in: Exploring a multiprocessor design space
3353 to analyze the impact of using STT-RAM in the memory hierarchy
3354 http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
3356 * Command-Line OCR with Tesseract on Mac OS X
3357 https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
3359 * Bug fixes and man page updates.
3364 * --env was changed to deal with Bash's new way of exporting a function.
3366 * GNU Parallel was cited in: Exclusion of cosmic rays in
3367 protoplanetary disks. II. Chemical gradients and observational
3368 signatures http://iopscience.iop.org/0004-637X/794/2/123/article
3370 * GNU Parallel was cited in: Application of Machine Learning to
3371 Algorithm Selection for TSP
3372 http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
3374 * GNU Parallel was cited in: Performance Models for LTE-Advanced
3376 http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
3378 * GNU Parallel was used (unfortunately without citation) in: De Novo
3379 Insertions and Deletions of Predominantly Paternal Origin Are
3380 Associated with Autism Spectrum Disorder
3381 http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
3383 * GNU Parallel was determined 'popular' by Statistical Analysis of
3384 Popular Open Source Software Projects and Their Communities
3385 http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
3387 * GNU Parallel is demonstrated in: Data Science at the Command Line:
3388 Facing the Future with Time-Tested Tools
3390 * GNU Parallel was covered in a talk at Sydney Perl Mongers group
3391 http://www.openfusion.net/talks/pwp/#24
3393 * GNU Parallel and how to get started with it
3394 http://www.jduck.net/blog/2014/09/30/gnu-paralell/
3396 * Behat/Selenium/Parallel
3397 http://jaffamonkey.com/behat-selenium-parallel/
3399 * Comparing Golang, Scala, Elixir and Ruby for ETL
3400 http://www.dimroc.com/2014/09/29/etl-language-showdown/
3402 * Assemble a list of which of these hosts are up or down
3403 http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
3405 * Running commands on many nodes simultaneously
3406 http://opsfun.wordpress.com/2014/03/31/19/
3408 * Ubuntu 13.04でGNU ParallelをGNUモードで動かす
3409 http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
3411 * Bug fixes and man page updates.
3416 * If the file given as --sshloginfile is changed it will be re-read
3417 when a job finishes though at most once per second. This makes it
3418 possible to add and remove hosts while running.
3420 * Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
3422 * OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
3424 * GNU Parallel was presented at Balti and Bioinformatics "On-Air"
3425 http://youtu.be/UtXlr19xTh8?t=2h5m0s
3427 * Pleiades Plus uses GNU Parallel
3428 https://github.com/ryanfb/pleiades-plus
3430 * Imagemagick and GNU Parallel
3431 http://deepdish.io/2014/09/15/gnu-parallel/
3433 * GNU Parallel (Sebuah Uji Coba)
3434 http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
3436 * GNU Parallel: 并行执行Linux命令
3437 http://blog.csdn.net/xzz_hust/article/details/39183837
3442 * GNU Parallel now uses the same shell it was started from as the
3443 command shell for local jobs. So if GNU Parallel is started from
3444 tcsh it will use tcsh as its shell even if the login $SHELL is
3445 different. For remote jobs the login $SHELL will be used.
3447 * The whole current environment in bash can be copied by using a shell
3448 wrapper function (Search manual for env_parallel).
3450 * --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
3451 {...} {/..} {/...}. The idea being that '+foo' matches the opposite
3452 of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
3453 = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
3455 * GNU Parallel now deals correctly with the combination
3456 rsync-3.1.X-client and rsync-2.5.7-server
3458 * GNU Parallel was cited in: A Web Service for Scholarly Big Data
3459 Information Extraction
3460 http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
3462 * Comparison of the speed of different GNU Parallel versions:
3463 http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
3465 * GNU Parallel was covered in the webcast 2014-08-20: Data Science at
3466 the Command Line http://www.oreilly.com/pub/e/3115
3468 * Distributed processing with GNU parallel
3469 http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
3471 * A Peek into GNU Parallel
3472 http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
3474 * Сборка GNU parallel для CentOS/RHEL
3475 http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
3477 * Bug fixes and man page updates.
3482 * {= perl expression =} can be used as replacement string. The
3483 expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
3484 the string. This makes replacement strings extremely flexible.
3486 * Positional perl expressions (similar to {2}) are given as {=2 perl
3487 expression=} where 2 is the position.
3489 * One small backwards incompatibility: {1}_{2} will replace {2} with
3490 the empty string if there is only one argument. Previously {2} would
3491 have been left untouched.
3493 * Replacement strings can be defined using --rpl. E.g. parallel --rpl
3494 '{.gz} s/\.gz$//' echo {.gz} ::: *.gz
3496 * The parenthesis around {= perl expression =} can be changed with
3499 * --tmux will direct the output to a tmux session instead of
3500 files. Each running jobs will be in its own window.
3502 * --halt 10% will stop spawning new jobs if 10% failed so far.
3504 * GNU Parallel was cited in: bammds: A tool for assessing the ancestry
3505 of low depth whole genome data using multidimensional scaling (MDS)
3506 http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
3508 * GNU Parallel was cited in: Molecular ferroelectric contributions to
3509 anomalous hysteresis in hybrid perovskite solar cells
3510 http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
3512 * GNU Parallel was cited in: Energy Sorghum-a genetic model for the
3513 design of C4 grass bioenergy crops
3514 http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
3516 * GNU Parallel was cited in: Web-scale Content Reuse Detection
3517 www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
3519 * Tell your friends to sign up for the Webcast at 2014-08-20 covering
3520 GNU Parallel: Data Science at the Command Line
3521 http://www.oreilly.com/pub/e/3115
3523 * GNU Parallel all the things!
3524 http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
3526 * Shell command composition and dispatch
3527 http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
3529 * Parallelising plink (or anything else) the easy way
3530 http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
3532 * Easy and cheap cluster building on AWS
3533 https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
3535 * Paralelizace běžných činností v konzoli pomocí GNU Parallel
3536 http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
3538 * [原] Ubuntu 下使用 parallel 命令的注意事项
3539 http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
3541 * 简单的并行, 可使用GNU parallel
3542 http://jerkwin.github.io/2014/06/10/GNU-parallel/
3544 * Bug fixes and man page updates.
3549 * --shebang and --shebang-wrap now works on FreeBSD.
3551 * --pipepart works with --header, --regexp, --cat and --fifo.
3553 * ./configure --disable-documentation will not build documentation.
3555 * {%} works as job slot.
3557 * GNU Parallel was cited in: Energy Efficient, High-speed
3558 Communication in WSNs
3559 https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
3561 * GNU Parallel was cited in: Ferroelectric contributions to anomalous
3562 hysteresis in hybrid perovskite solar cells
3563 http://arxiv.org/pdf/1405.5810.pdf
3565 * Processes Paralleling to Speed up Computing and Tasks Execution in
3567 http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
3569 * Moving / Copying lots of s3 files quickly using gnu parallel
3570 http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
3572 * Speeding up grep log queries with GNU Parallel
3573 http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
3575 * Ubuntu - Gnu parallel - It's awesome
3576 http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
3578 * Export quicklooks with vector overlay using TuiView
3579 http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
3581 * GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
3583 * GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
3585 * Bug fixes and man page updates.
3590 * Use --semaphoretimeout to ignore the semaphore lock after a while.
3592 * {%} introduced as job slot replacement string. It has known bugs.
3594 * --slotreplace changes slot replacement string.
3596 * GNU Parallel officially in Solaris 11.2beta
3597 https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
3599 * GNU Parallel was cited in: A Comparison of Antenna Placement
3600 Algorithms http://abhinavjauhri.com/publications/eap.pdf
3602 * Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
3603 https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
3605 * BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
3607 * Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
3609 * Convert FLAC to MP3 with GNU parallel
3610 http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
3612 * JD Edwards Business Function Documentation
3613 http://www.azertech.net/content/jd-edwards-business-function-documentation
3615 * Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
3617 * How I start a bioinformatics project
3618 http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
3620 * No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
3622 * Bug fixes and man page updates.
3627 * --pipepart is a highly efficient alternative to --pipe if the input
3628 is a real file and not a pipe.
3630 * If using --cat or --fifo with --pipe the {} in the command will be
3631 replaced with the name of a physical file and a fifo respectively
3632 containing the block from --pipe. Useful for commands that cannot
3633 read from standard input (stdin).
3635 * --controlmaster has gotten an overhaul and is no longer
3638 * --env is now copied when determining CPUs on remote system. Useful
3639 for copying $PATH if parallel is not in the normal path.
3641 * --results now chops the argument if the argument is longer than the
3642 allowed path length.
3644 * Build now survives if pod2* are not installed.
3646 * The git repository now contains tags of releases.
3648 * GNU Parallel was cited in: Proactive System for Digital Forensic
3650 http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
3652 * GNU Parallel was cited in: Beyond MAP estimation with the
3653 track-oriented multiple hypothesis tracker
3654 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
3656 * GNU Parallel was cited in: Prokka: rapid prokaryotic genome
3658 http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
3660 * GNU Parallel was used (unfortunately with improper citation) in:
3661 Perspectives in magnetic resonance: NMR in the post-FFT era
3662 http://www.sciencedirect.com/science/article/pii/S1090780713003054
3664 * GNU Parallel is used in https://github.com/cc2qe/speedseq
3666 * Batch XML validation at the command line.
3667 http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
3669 * freebayes-parallel uses GNU Parallel
3670 https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
3672 * Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
3674 * Speeding Up Grep Log Queries with GNU Parallel
3675 http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
3677 * How to run tbss_2_reg in parallel
3678 http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
3680 * GNU parallel example: blastn https://asciinema.org/a/8775
3682 * Iterative DNS Brute Forcing
3683 http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
3685 * Ejecutando comandos en paralelo
3686 http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
3688 * Ejecutando en paralelo en bash (ejemplo con rsync)
3689 http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
3691 * Bug fixes and man page updates.
3696 * Offical package for Alpine Linux now exists:
3697 http://alpinelinux.org/apk/main/x86/parallel
3699 * GNU Parallel was cited in: Estimating uncertainties in statistics
3700 computed from direct numerical simulation
3701 http://dx.doi.org/10.1063/1.4866813
3703 * GNU Parallel was cited in: Vehicle routing problems with time
3704 windows and multiple service workers: a systematic comparison
3705 between ACO and GRASP
3706 http://link.springer.com/article/10.1007/s10100-014-0341-z
3708 * GNU Parallel, quick and easy
3709 http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
3711 * Using Multiple CPU Cores With Command Line Tools
3712 http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
3714 * Batch convert mp3 CBR to VBR
3715 http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
3717 * Running Behat in parallel with Selenium grid
3718 http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
3720 * Git-Mirror per cronjob aktuell halten
3721 https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
3723 * Пишем многопоточный скрипт на bash
3724 http://dafter.ru/duf/howto/130.html
3726 * 如何利用多核CPU来加速你的Linux命令
3727 http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
3729 * Bug fixes and man page updates.
3734 * --tollef has been retired.
3736 * --compress has be redesigned due to bugs.
3738 * Format of --eta and --joblog has changed slightly.
3740 * GNU Parallel was cited in: Speaker Verification and Keyword Spotting
3741 Systems for Forensic Applications
3742 http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
3744 * GNU Parallel was cited in: Scaleable Code Clone Detection
3745 http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
3747 * GNU Parallel was cited in: Clone Detection that scales
3748 http://scg.unibe.ch/archive/masters/Vogt14a.pdf
3750 * GNU Parallel was cited in: Scalable Positional Analysis for Studying
3751 Evolution of Nodes in Networks
3752 http://arxiv-web3.library.cornell.edu/pdf/1402.3797
3754 * GNU Parallel was cited in: Aggregate Characterization of User
3755 Behavior in Twitter and Analysis of the Retweet Graph
3756 http://arxiv.org/pdf/1402.2671v1
3758 * GNU Parallel was used (unfortunately without citation) in: Causal
3759 Network Models for Predicting Compound Targets and Driving Pathways
3761 http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
3763 * GNU Parallel was used (unfortunately without citation) in:
3764 Performance and Energy Efficiency of Common Compression /
3765 Decompression Utilities
3766 http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
3768 * GNU Parallel was used (unfortunately without citation) in: SpringFS:
3769 Bridging Agility and Performance in Elastic Distributed Storage
3770 http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
3772 * GNU Parallel was recommended (without citation) in: Redesigning the
3773 Specificity of Protein-DNA Interactions with Rosetta
3774 http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
3776 * GNU Parallel is co-distributed with RepeatExplorer
3777 http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
3779 * Convert MP3 to a scrolling spectrum waterfall plot video
3780 http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
3782 * PHP wrapper class for the GNU Parallel tool
3783 https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
3785 * Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
3787 * Copias de archivos con rsync y parallel
3788 http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
3790 * Single-Thread-Programme auf Multicore-Rechnern parallelisieren
3791 http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
3793 * Распараллеливаем процессы для ускорения вычислений и выполнения
3794 заданий в Linux http://savepearlharbor.com/?p=210480
3796 * Bug fixes and man page updates.
3801 * GNU Parallel was cited in: On the likelihood of multiple bit upsets
3803 http://arxiv-web3.library.cornell.edu/pdf/1401.1003
3805 * HaploClique uses GNU Parallel
3806 https://github.com/armintoepfer/haploclique
3808 * Scraping NSScreencast
3809 https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
3811 * 30 Cool Open Source Software I Discovered in 2013
3812 http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
3814 * [Unix] 13. The power of doing things in Parallel
3815 http://leetaey.tistory.com/384
3817 * Parallel the execution of a job that read from stdin
3818 http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
3820 * Mon Make à moi (6:38-11:50)
3821 http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
3823 * Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
3824 effizienter in der Shell arbeiten
3825 https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
3827 * Summary of GNU Parallel tutorial
3828 http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
3830 * Bug fixes and man page updates.
3835 * GNU Parallel now has a motto: For people who live life in the
3838 * Detect if the buffer dir $TMPDIR runs out of space. This changes a
3839 central piece of code, making this release alpha quality.
3841 * --keep-order --(n)onall will sort according to the sshlogin.
3843 * Detect the number of CPUs on DEC Tru64.
3845 * GNU sql: --list-tables for sqlite3.
3847 * GNU Parallel was cited in: Variational Message-Passing: Extension to
3848 Continuous Variables and Applications in Multi-Target Tracking
3849 http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
3851 * GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
3853 https://www.duo.uio.no/handle/10852/37431
3855 * GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
3857 http://repositorio.ul.pt/handle/10451/9436
3859 * GNU Parallel was cited in: Diacritization, automatic segmentation
3860 and labeling for Levantine Arabic speech
3861 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
3863 * GNU Parallel was cited in: Investigation of emotion classification
3864 using speech rhythm metrics
3865 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
3867 * GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
3868 and Non-Native Speaking Styles
3869 http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
3871 * GNU Parallel was cited in: Evolutionary optimization of wetlands
3873 http://dl.acm.org/citation.cfm?id=2480400
3875 * GNU Parallel was cited (unfortunately with wrong citation) in:
3876 RDBMS vs NoSQL: Performance and Scaling Comparison
3877 http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
3879 * GNU Parallel was used (without proper citation) in: Comprehensive
3880 Analysis Pipeline for Discovery of Human Genetic Variation
3881 http://www.google.com/patents/US20130311106
3883 * Encrypt and decrypt in parallel with GPG
3884 http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
3886 * Using GNU Parallel to create a SVM classifier
3887 http://ivanyu.me/blog/2013/12/01/parallel/
3889 * Parallel xz compression
3890 http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
3892 * Got CPUs to burn? Put 'em to work with GNU parallel
3893 http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
3896 http://pastebin.com/JmnB9ffq
3898 * Gnu Parallel for fun and profit
3899 https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
3901 * Parallelization of Exploitation
3902 http://rantsideasstuff.com/parallelization-of-exploitation/
3904 * Running assemblies in parallel
3905 https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
3907 * Procesando la contabilidad del PP
3908 http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
3910 * Mon make à moi (French)
3911 http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
3913 * Bug fixes and man page updates.
3918 * A citation notice is printed on stderr only if stderr is a terminal,
3919 the user has not specified --no-notice and the user has not run
3920 --bibtex once. This makes the release alpha quality.
3922 * --compress will compress temporary files. If the output is big and
3923 very compressible this will take up less disk space in $TMPDIR and
3924 possibly be faster due to less disk I/O.
3926 * --compress-program comtrols which program to use for compressing
3929 * --bar show progress as a progress bar compatible with zenity.
3931 * --resume can now be used with --result: Jobs already run will be
3934 * --transfer and --basefile support paths relative to the --workdir by
3935 inserting /./ into the path.
3937 * GNU Parallel was cited in: fastphylo: Fast tools for phylogenetics
3938 http://www.biomedcentral.com/1471-2105/14/334/abstract
3940 * Using GNU parallel
3941 http://davetang.org/muse/2013/11/18/using-gnu-parallel/
3943 * Techlux - GNU - Parallel (German)
3944 https://techlux.de/blog/2013/11/07/gnu-parallel/
3946 * awk, sed, bzip2, grep, wc на всех ядрах
3947 http://vk.com/page-30666517_45528467
3949 * 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
3950 http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
3952 * GNU Parallel (Japanese)
3953 http://jarp.does.notwork.org/diary/201311b.html#20131117
3955 * Bug fixes and man page updates.
3960 * --transfer files with /./ in the path will copy the files relative
3963 * The maximal command length is now cached in a file halfing the
3966 * GNU Parallel was cited in: Investigating speaker gender using rhythm
3967 metrics in Arabic dialects
3968 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
3970 * GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
3971 lastensuojelun asiakaskertomuksista
3972 https://tampub.uta.fi/handle/10024/84978
3974 * Some Additional Useful Bioinformatics Software
3975 http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
3977 * GNU Parallel Example Screen Cast (bil to Geotiff conversion)
3978 http://www.youtube.com/watch?v=PpF27eC7Mys
3980 * Using GNU Parallel to roll-your-own Map Reduce!
3981 http://www.rankfocus.com/hello-world/
3983 * Use multiple CPU Cores with your Linux commands
3984 http://www.rankfocus.com/use-cpu-cores-linux-commands/
3986 * Using GNU Parallel at HPC @ Uni.lu
3987 https://hpc.uni.lu/users/use_cases/
3989 * Scaling up with parallelization
3990 https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
3992 * How to teach yourself to be a technical tester
3993 http://infiniteundo.com/post/62421363463/qa-toc
3995 * Faster Rasters For All
3996 http://2013.foss4g.org/conf/programme/presentations/52/
3998 * Optimizing translated file downloads
3999 http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
4001 * EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
4002 http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
4004 * Best Practices for Amazon EMR
4005 http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
4007 * Computing checksums for backup
4008 https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
4010 * Un exemplu de utilizare a programului GNU parallel
4011 http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
4014 http://www.slideshare.net/drakeguan/part1-23705978
4016 * なんか気持ちよかです Gnu Parallel
4017 http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
4019 * Bug fixes and man page updates.
4024 * PDF-files of documentation is now included.
4026 * Cloning at warp speed 100 VMs in 1 minute using one command line
4027 http://www.beebotech.com.au/tag/command-line/
4029 * Calcul Quebec's introduction to GNU Parallel
4030 https://wiki.calculquebec.ca/w/GNU_parallel
4032 * Brincando com o GNU parallel
4033 http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
4035 * GNU Parallelで並列処理を行う
4036 http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
4038 * Bug fixes and man page updates.
4043 * A tutorial showing much of GNU Parallel's functionality. Spend an
4044 hour walking through the tutorial. Your commandline will love you
4045 for it. man parallel_tutorial
4047 * --line-buffer will buffer output on line basis. --group keeps the
4048 output together for a whole job. --ungroup allows output to mixup
4049 with half a line coming from one job and half a line coming from
4050 another job. --line-buffer fits between these two; it prints a full
4051 line, but will allow for mixing lines of different jobs.
4053 * --record-env records all variables and functions set. Useful to
4054 record the normal environment before using --env _.
4056 * --env _ exports all functions and variables to the remote server
4057 except for the ones recorded.
4059 * New signing key. Due to recommendations from NIST
4060 http://www.keylength.com/en/4/ the signing key was changed from
4061 1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
4063 * Agalma: an automated phylogenomics workflow
4064 http://arxiv.org/pdf/1307.6432
4066 * Job ad asking for GNU Parallel expertise
4067 http://seattle.craigslist.org/est/sof/4006079352.html
4069 * Transient Beowulf Clustering with GNU Parallel and SSHfs
4070 http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/
4072 * Aligning to unique regions
4073 http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/
4075 * Top 10 scripting tricks for basic bioinformatics
4076 http://students.washington.edu/bowmanjs/wordpress/?p=873
4078 * Using GNU Parallel to speed up and simplify data analyzes
4079 http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/
4081 * Compression of files in parallel using GNU parallel
4082 http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html
4084 * Using GNU Parallel with Amazon
4085 media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
4087 * Some useful comments on GNU Parallel
4088 https://news.ycombinator.com/item?id=6209767
4090 * Using GNU Parallel to count reads mapping to genes for multiple BAMs
4091 http://drduanehassane.com/blog/sequencing-resources
4093 * TimeMachineっぽいバックアップスクリプト
4094 http://rio.tc/2013/07/timemachine-1.html
4096 * GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
4097 http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab
4099 * Bug fixes and man page updates.
4104 * --round-robin with --pipe will write all blocks to already running
4107 * --env can now transfer Bash function for remote execution. That is
4110 * GNU Parallel was used (unfortunately with improper citation) in:
4111 Understanding the Impact of E-Commerce Software on the Adoption of
4112 Structured Data on the Web
4113 http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1
4115 * GNU Parallel was used (unfortunately with improper citation) in:
4116 CWI at TREC 2012, KBA track and Session Track
4117 http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf
4119 * Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
4120 Interactions through Optimal Wall Shaping.
4121 http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653
4123 * Using GNU parallel to convert images.
4124 http://www.brunokim.com.br/blog/?p=18
4126 * A quick way to parallelize.
4127 http://timotheepoisot.fr/2013/07/08/parallel/
4129 * GNU Parallel 20130522 ('Rana Plaza') 发布,并行作业执行.
4130 http://www.open-open.com/news/view/371301
4132 * Quite a few bug fixes and man page updates.
4137 * --xapply now recycles arguments if an input source has more
4138 arguments than others.
4140 * The sleep time between jobs is now both increased and decreased
4143 * 10 seconds installation check the signature using GnuPG if GnuPG is
4146 * Developer job asking for GNU Parallel expertise.
4147 http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central
4149 * A small utility program to run youtube-dl in parallel.
4150 https://github.com/dlh/youtube-dl-parallel
4152 * Parallelizing Freesurfer:
4153 http://blog.cogneurostats.com/?p=148
4155 * Bug fixes and man page updates.
4160 * --ctrlc is now default if --pipe is not used; thus making it
4161 possible to kill remotely started jobs simply by pressing Ctrl-C.
4163 * --timeout 200% now means kill jobs that take more than twice the
4164 time of the median run time of a job.
4166 * Jobs are now distributed round robin when having mulitiple
4167 --sshlogin instead of filling up one --sshlogin at a time.
4169 * niceload: darwin version of --io --mem --swap. Thanks to Anders F
4172 * Bug fixes and man page updates.
4177 * 10 seconds installation: wget -O - pi.dk/3 | sh
4179 * HPUX CPU/core detection. Thanks to Javier Tarradas.
4181 * CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
4183 * --ctrlc will send SIGINT to tasks running on remote computers and
4186 * --load now uses 'ps' to see immediately see the number of running
4187 processes instead of 'uptime' thus making --load react much faster.
4189 * Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
4190 bugs. Some of these required quite extensive changes making this
4191 release beta quality.
4193 * --retries works with --onall.
4195 * The new --load computation now works on FreeBSD 7.
4197 * --nice works under tcsh.
4199 * GNU Parallel is officially supported in NetBSD.
4200 http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html
4202 * GNU Parallel is accepted for openSUSE.
4203 http://software.opensuse.org/package/gnu_parallel
4205 * GNU Parallel can be installed under Microsoft Windows (CygWin).
4206 http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx
4208 * Excuses for not installing GNU Parallel.
4209 http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html
4211 * Job advert that requires GNU Parallel competence.
4212 http://versium.com/about/careers/
4214 * Parallelizing Batch Jobs for Fun and Profit.
4215 http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
4217 * Processing Transcription Start Sites(TSS) for the entire Mouse genome.
4218 http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/
4220 * GNU parallel is used throughout Scrimer.
4221 http://scrimer.readthedocs.org/en/latest/
4223 * GNU Parallel helped making public documents searchable.
4224 http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html
4226 * Identifying big movie files (German).
4227 http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/
4229 * Bug fixes and man page updates.
4234 * --resume works with --pipe.
4236 * --resume-failed will go through --joblog, redo the failed jobs and
4237 then continue like --resume.
4239 * Negative positional arguments count from the end: {-1} means the
4240 last argument, {-2} the second to last.
4242 * NetBSD CPU detection.
4244 * --blocksize increases exponentially if it smaller than a full
4247 * Processing n-line records (--pipe -L n) is now much faster.
4249 * --tollef is obsoleted after discussion on the mailing list.
4251 * GNU Parallel is the highest rated tool on:
4252 http://www.biostars.org/show/tools/?sort=votes&since=all%20time
4254 * GNU Parallel was loved during FSFE's #ilovefs campaign.
4255 http://fsfe.org/news/2013/news-20130212-01.en.html
4257 * Using GNU Parallel with s3cmd (Japanese).
4258 http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html
4260 * Intro to GNU Parallel (Chinese).
4261 http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/
4263 * Bug fixes and man page updates.
4268 * --sshdelay Delay starting next ssh by secs seconds. GNU parallel
4269 will pause secs seconds after starting each ssh. secs can be less
4272 * Official OpenBSD port:
4273 http://ftp.openbsd.org/ports/sysutils/parallel/
4275 * Official DragonFlyBSD package:
4276 http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/
4278 * Post about niceload in Hungarian:
4279 http://commandline.blog.hu/2013/01/02/niceload
4281 * 自炊スキャンデータをKobo Gloに最適化
4282 http://interstadial.wordpress.com/2013/01/20/
4284 * GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
4285 http://oshiire.to/archives/1686
4287 * Bug fixes and man page updates.
4292 * --shebang-wrap makes is possible to parallelize scripts by putting
4293 parallel in the shebang line (the first #! line in scripts).
4295 * --delay puts in a delay after starting each job. Useful to avoid
4296 raceconditions and thundering herd problems.
4298 * --results now uses / as separator instead of TAB and thus creates
4299 subdirs. Thanks to Drew Frank.
4301 * parallel: OpenBSD CPU detection. Thanks to Michał Markowski.
4303 * niceload --sensor allows for negative numbers to signify a lower
4304 number means the limit is lower.
4306 * niceload --prg suspend a named program that is already running.
4308 * niceload multiple --pid suspend process ids that are already running.
4310 * Convertir des images avec find et imagemagick
4311 http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html
4313 * Bug fixes and man page updates.
4318 * niceload --sensor makes it possible to use a program to control if a
4319 program should be suspended.
4321 * GNU Parallel was part of the justification for Nordic Free Software
4323 https://fsfe.org/news/2012/news-20121112-01.html
4325 * Dateien schneller packen und konvertieren mit GNU parallel
4326 http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel
4328 * Processing images from Lunar Reconnaissance Orbiter Narrow Angle
4329 Camera http://lunokhod.org/?p=774
4331 * GNU Parallel is used in types2: Type and Hapax Accumulation Curves
4332 http://www.cs.helsinki.fi/u/josuomel/types2/
4334 * GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
4335 PCA-based system for Dictionary Learning and Encoding for Robust
4337 http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
4338 http://www.cse.iitm.ac.in/~mrsri/ppca.pdf
4340 * Mapreduce avec parallel, cat et une redirection
4341 http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection
4343 * GNU Parallel for Large Batches of Small Jobs
4344 https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf
4346 * GNU Parallel used in black belt tip (8:50-10:12)
4347 https://aws.amazon.com/apac/awspodcast/episode20/
4349 * Bug fixes and man page updates.
4354 * --results structures output files so they can be imported using
4355 Pandas (http://pandas.pydata.org/). Useful when doing simulations to
4356 select output from some arguments.
4358 * Use --env to transfer environment variables through ssh to remote
4361 * GNU Parallel is accepted for Ubuntu Quantal.
4362 http://packages.ubuntu.com/quantal/parallel
4364 * GNU Parallel was requested for OpenSUSE (go vote!)
4365 https://features.opensuse.org/314461
4367 * Kneth's Korner: Map/Reduce and GNU Parallel
4368 http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html
4370 * Blog post in Japanese by Siguniang.
4371 https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
4372 (Siguniang mentions the logo is called 'The Cafe Wall Illusion')
4373 http://www.michaelbach.de/ot/ang_cafewall/index.html
4375 * GNU Parallel, where have you been all my life?
4376 http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
4378 * Reference-free ddRADseq analysis tools uses GNU Parallel.
4379 https://github.com/brantp/rtd#readme
4381 * When bash just isn’t quick enough.
4382 https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
4384 * Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
4385 http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
4387 * GNU Parallel Notes.
4388 http://xed.ch/help/parallel.html
4390 * Bug fixes and man page updates.
4395 * Due to a bugfix the main flow has changed. Making this release beta
4398 * Parallel Proxy Scraper & Checker Tool
4399 https://www.youtube.com/watch?v=iXCeR_XsP6o
4401 * Bug fixes and man page updates.
4406 * GNU Parallel was presented at Chiang Mai Bar Camp
4407 http://barcampchiangmai.org/
4409 http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/
4411 * I don't always max out all my CPUs, but when I do, I do it with GNU
4413 http://memegenerator.net/instance/22638454
4415 * Bug fixes and man page updates.
4420 * '-L n --pipe' will use records of n lines. This is useful when
4421 processing data that have fixed records with a fixed number of
4424 * --filter-hosts will remove down hosts. For each remote host: check
4425 that login through ssh works. If not: do not use this host.
4426 Currently you can not put --filter-hosts in a profile, $PARALLEL,
4427 /etc/parallel/config or similar. This is because GNU Parallel uses
4428 GNU Parallel to compute this, so you will get an infinite loop. This
4429 will likely be fixed in a later release.
4431 * --pipe now uses fork() instead of busy wait. The performance should
4432 be better on computers with >10 cores while remaining the same on
4433 computers with few cores.
4435 * GNU Parallel will be represented at Chiang Mai Bar Camp.
4436 http://barcampchiangmai.org/
4438 * Indexing Big Data on Amazon AWS: The Screencast
4439 (Check out his T-shirt at 18:40-21:00).
4440 http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/
4442 * biotoolbox uses GNU Parallel.
4443 https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper
4445 * Spiceweasel uses GNU Parallel.
4446 https://github.com/mattray/spiceweasel
4448 * GNU Parallel part of The Administrators Challenge.
4449 http://challenge.twistedrack.com/questions/qs3.php
4451 * Finding Oldest Firefox Code using GNU Parallel.
4452 http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/
4454 * Bug fixes (quite a few for remote job running) and man page updates.
4459 * Timings in --joblog now with milliseconds.
4461 * Thesis using GNU Parallel (correctly cited; hooray!).
4462 http://scholarworks.sjsu.edu/etd_projects/222/
4465 http://www.perzl.org/aix/index.php?n=Main.Parallel
4467 * Prokka uses GNU Parallel.
4468 http://bioinformatics.net.au/prokka-manual.html
4470 * GNU Parallel was presented at MUUG.
4471 http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/
4473 * Blog post: Manipulating many or large files with GNU parallel.
4474 http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html
4476 * Blog post: Running commands in parallel using bash.
4477 http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html
4479 * Blog post in Hungarian.
4480 http://commandline.blog.hu/2012/05/03/gnu_parallel
4482 * Popularity of GNU Parallel in Debian explodes.
4483 http://qa.debian.org/popcon-graph.php?packages=parallel
4485 * Bug fixes and man page updates.
4490 * A race condition bug caused restructuring of a central piece of the
4491 code. Thus this release of GNU Parallel should be considered beta
4494 * sql --dbsize will now list sizes of all databases if given no
4497 * GNU Parallel is now in Debian Unstable.
4498 apt-get install parallel
4500 * Article: Computational and experimental analyses of
4501 retrotransposon-associated minisatellite DNAs in the soybean genome.
4502 http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf
4504 * Blog post: GNU parallel - the best thing since sliced bread.
4505 https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/
4507 * Blog post: GNU Parallel makes everything faster.
4508 http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html
4510 * Blog post (German): Howto: GNU parallel.
4511 http://d24m.de/2012/04/05/howto-gnu-parallel/
4513 * Blog post: Running in Parallel
4514 http://interactivity.ifactory.com/2012/04/running-in-parallel/
4516 * 20000 watched the first intro video.
4519 * The first 5 have received their GNU Parallel merchandise
4520 https://www.gnu.org/software/parallel/merchandise.html
4522 * Bug fixes and man page updates.
4527 * Parallel Process Database Dumps.
4528 http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html
4530 * Using GNU Parallel to process images from Mars.
4531 http://lunokhod.org/?p=468
4533 * Using GNU Parallel with bzgrep.
4534 http://filip.rembialkowski.net/did-you-know-gnu-parallel/
4536 * Bug fixes and man page updates.
4541 * --workdir . will use the current working dir. If the current working
4542 dir is beneath your home dir, the value . is treated as the relative
4543 path to your home dir. This means that if your home dir is different
4544 on remote computers (e.g. if your login is different) the relative
4545 path will still be relative to your home dir.
4547 * A texinfo file is now generated from the POD file using pod2texi.
4549 * The bioinformatics article "Fast large-scale clustering of protein
4550 structures using Gauss integrals" mentions GNU Parallel. They forgot
4551 to add the reference. Please remember --bibtex if you use GNU
4552 Parallel in an article.
4553 http://bioinformatics.oxfordjournals.org/content/28/4/510.short
4555 * The first supporter received his merchandise. Did you order yours?
4556 https://www.gnu.org/software/parallel/merchandise.html
4558 * How to use GNU Parallel with samtools.
4559 http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html
4561 * How to use GNU Parallel for vacuuming PostgreSQL tables.
4562 http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/
4564 * Converting e-books with Calibre and GNU Parallel.
4565 http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/
4567 * Using GNU Parallel for tailing logfiles from multiple servers.
4568 http://silviud.blogspot.com/2012/02/shell-parallel-processing.html
4570 * Bug fixes and man page updates.
4575 * --header : uses the first input line as column names and you can
4576 then use {colname} as a replacement string in the command. This also
4577 works with multiple :::'s.
4579 * --header <regexp> matches a header as a regular expression and
4580 repeats the header for each block with --pipe.
4582 * --resume resumes from the last unfinished job. Useful if you stop
4583 GNU Parallel and restart it later with the same arguments.
4585 * niceload now propagates exit status correctly.
4587 * Show your support for GNU Parallel. For a limited time you can get a
4588 GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
4589 https://www.gnu.org/software/parallel/merchandise.html
4591 * Options -g -B -T -U -W -Y are retired as warned 6 months ago.
4593 * GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
4594 to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128
4596 * Article in IEEE Software on GNU Parallel. Thanks to Diomidis
4597 Spinellis. http://www.spinellis.gr/blog/20110911/
4599 * An article on Narwhal which uses GNU Parallel. They forgot to add
4600 the reference. Please remember --bibtex if you use GNU Parallel in
4602 http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf
4604 * Blog post on using GNU Parallel to speed up BLAST queries:
4605 http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html
4607 * Video showing Wake-on-LAN with GNU Parallel.
4608 https://www.youtube.com/watch?v=0mB-yIyKFLQ
4610 * Using GNU Parallel with Solr.
4611 http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html
4613 * First job ad including GNU Parallel:
4614 http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex
4616 * Bug fixes and man page updates.
4621 * --timeout will now kill grandchildren.
4623 * Interview in Hacker Public Radio.
4624 http://hackerpublicradio.org/eps.php?id=0860
4626 * Blog post in Chinese.
4627 http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html
4629 * Bug fixes and man page updates.
4634 * GNU Parallel package for Fedora.
4635 https://admin.fedoraproject.org/pkgdb/acls/name/parallel
4637 * Using GNU Parallel with Mozilla cross referencing.
4638 https://blog.mozilla.com/it/2011/11/15/mxr-improvements/
4640 * Neat flash presentation of GNU Parallel.
4641 http://prezi.com/0nq74b2elgtx/about-gnu-parallel/
4643 * How to create tar files of dirs in parallel.
4644 https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/
4646 * Article in Admin Network&Security by Ben Martin.
4647 http://www.admin-magazine.com/HPC/Articles/GNU-Parallel
4649 * Blog post in Polish.
4650 http://blog.tiger.com.pl/2011/01/05/gnu-parallel/
4652 * Blog post on using GNU Parallel of Mac OS X.
4653 http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/
4655 * Blog post in English by researcher.
4656 http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/
4658 * Blog entry in Chinese.
4659 http://blog.csdn.net/tossense/article/details/6889026
4661 * Blog entry in Japanese on managing many servers.
4662 http://hiroakis.com/blog/2011/11/13/gnu-parallel/
4664 * GNU Parallel is now part of ppbs.
4665 http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html
4667 * How to use GNU Parallel with MCX.
4668 http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster
4670 * Bug fixes and man page updates.
4675 * --tag prepends lines with the argument(s). If used with --(n)onall
4676 the line will be prepended with the sshlogin instead.
4678 * --shellquote does not run the command but quotes it using \'s.
4679 Useful for making quoted composed commands.
4681 * --profile can now be repeated merging multiple profiles.
4683 * --bibtex now gives the BibTeX entry.
4684 Thanks to Aleksandr Levchuk for testing.
4686 * Makefile for simple .deb package.
4687 cd packager/debian; make
4689 * sql: --list-databases lists the databases.
4691 * GNU Parallel officially in Fedora 16
4692 http://www.spinics.net/lists/fedora-package-announce/msg67130.html
4694 * Blog post on recompression FLAC audio.
4695 http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html
4697 * The most complex use of ::: I have seen so far.
4698 http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html
4700 * Example of using GNU Parallel with sudo.
4701 http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files
4703 * Use wget and gnu parallel to download mp3s at rocket speed.
4704 http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at
4706 * First CV referring to GNU Parallel.
4707 http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602
4709 * Cartwright labs usage of GNU Parallel.
4710 http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck
4712 * Bug fixes and man page updates.
4717 * --timeout implemented so that slow commands can be killed
4719 * CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.
4721 * Example of a parallel webcrawler in the man page.
4723 * Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
4724 http://wirtel.be/2011/07/15/rsync_parallel/
4726 * Blog post in Japanese.
4727 http://dminor11th.blogspot.com/2011/08/gnu-parallel.html
4729 * Blog post about optimizing JPEGs. Thanks to Thomas Jost.
4730 http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/
4732 * Bug fixes and man page updates.
4737 * niceload: --hard will suspend a program if a limit is reached - as
4738 opposed to just slowing the program down.
4740 * niceload: --soft will slow the program down - as opposed to
4741 suspending the program completely.
4743 * niceload: --run-io will slow down a program if disk io goes above a
4746 * niceload: --run-load will slow down a program if loadaverage goes
4747 above a certain limit.
4749 * niceload: --run-mem will slow down a program if free memory goes
4750 below a certain limit.
4752 * niceload: --run-noswap will slow down a program if the computer is
4755 * niceload: --start-io, --start-load, --start-mem, --start-noswap will
4756 defer starting a program until the system is below the limit.
4758 * --io, --load, --mem, and --noswap sets both --run-* and --start-*.
4760 * niceload got a major rewrite and is now object oriented.
4762 * GNU Parallel was presented at Nordic Perl Workshop 2011.
4763 http://conferences.yapceurope.org/npw2011/talk/3416
4765 * Blog post about zcat and GNU Parallel. Thanks to Dr. John.
4766 http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/
4768 * 2 blog posts in Japanese. Thanks to Negima.
4769 http://d.hatena.ne.jp/negima1976/20110607/1307412660
4770 http://d.hatena.ne.jp/negima1976/20110628/1309252494
4772 * Blog post for bioinformatics. Thanks to Chris Miller.
4773 http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/
4775 * Bug fixes and man page updates.
4780 * --onall will run all the jobs on all the computers. This is useful
4781 for systemadinistrators having multiple servers.
4783 * --nonall runs like --onall but reads no arguments from stdin
4784 (standard input), so is possible to do:
4785 parallel --nonall -S computer1,computer2 uptime
4787 * Context replace now works with multiple input sources:
4788 parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c
4790 * --noswap do not start a job on a server that is swapping.
4792 * Article: Parallel processing without Hadoop!
4793 http://www.solutionhacker.com/parallel-processing-without-hadoop/
4795 * Article in Linux Magazine (Spanish). Thanks to Ben Martin.
4796 http://www.linux-magazine.es/issue/67/
4798 * First blog post in Korean. Thanks to 민병국.
4799 http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#
4801 * Blog post in Japanese. Thanks to Naoya Nakazawa.
4802 http://www.sssg.org/blogs/naoya/archives/2003
4804 * Blog post in English. Thanks to Dagon.
4805 http://hekate.homeip.net/2011/05/29/
4807 * Bug fixes and man page updates.
4812 * Multiple ::: can be put on the command line and will be treated
4813 similar to contents from multiple -a's.
4815 * ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
4816 refer to inputs from the different input sources.
4818 * --xapply is now needed to get xapply's behaviour of reading one line
4819 from each of the input sources.
4821 * Multiple input sources will cause all combinations of arguments from
4822 the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
4823 a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
4826 * Implemented {//} for the input line with the basename removed (dirname).
4828 * New video showing the new ::: and :::: input sources.
4829 http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc
4831 * GNU Parallel now has a logo.
4832 http://www.gnu.org/software/parallel/logo.png
4834 * Article about GNU SQL in USENIX Magazine ;login: (print)
4835 http://www.usenix.org/publications/login/2011-04/
4837 * Using GNU Parallel with EC2. Thanks to Kevin Wu.
4838 http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in
4840 * Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
4841 http://d.hatena.ne.jp/ichii386/20110426
4843 * Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
4844 http://www.hollenback.net/index.php/MacportsParallel
4846 * Robert from Echo One discusses using processes instead of threads:
4847 http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/
4849 * How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
4850 http://www.kevinstock.org/2011/04/using-the-ri-cluster/
4852 * Short article about using GNU Parallel with lame:
4853 http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion
4855 * Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
4856 http://blog.clouder.jp/archives/001140.html
4858 * BBC Research & Development uses GNU Parallel:
4859 http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml
4861 * Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
4862 http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/
4864 * Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
4865 http://derek.chezmarcotte.ca/?p=286
4867 * Bug fixes and man page updates.
4872 * {#} now works as an alias for $PARALLEL_PID.
4874 * --eta now estimates way more accurately.
4876 * CPU detection code for AIX thanks to Christian Netrwal.
4878 * --joblog contains exitcode.
4880 * Thanks to Ævar Arnfjörð Bjarmason for reading my code.
4882 * GNU Parallel was presented at:
4883 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4884 - OSAA.dk, Aarhus, 2011-04-12
4886 * Blog entry in Japanese. Thanks to Riywo.
4887 http://blog.riywo.com/2011/04/19/022802
4889 * Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
4890 J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel
4892 * First example of using GNU Parallel in Hebrew. Thanks to omry.
4895 * Intro video got past 10000 hits.
4896 http://www.youtube.com/watch?v=OpaiGYxkSuQ
4898 * Bug fixes and man page updates.
4903 * --tollef to be switch compatible with Tollef's parallel. This will
4904 cause -l to mean --load, and the argument separator will be --
4907 * --gnu will force GNU Parallel to behave like GNU Parallel even if
4910 * Site wide config file: /etc/parallel/config
4912 This should solve the issue with some packagers renaming GNU
4913 Parallel to gparallel to avoid the naming conflict.
4915 By putting --tollef in the site wide config file you can deinstall
4916 Tollef's parallel and install GNU Parallel instead without any
4917 change for users or scripts. This is useful for packagers that
4918 currently rename GNU Parallel or simply do not distribute GNU
4919 Parallel because the command name conflicts with Tollef's parallel.
4921 * -L 0 -n 0, and -N 0 implemented. They will read one argument,
4922 but insert 0 arguments on the command line. Useful if you just want
4923 to run the same command with the same arguments a number of times.
4925 * GNU Parallel is now in Fink. Thanks to Jesse Alama.
4926 http://pdb.finkproject.org/pdb/package.php/parallel
4928 * Opscode Cookbook for Chef. Thanks to Joshua Timberman.
4929 https://github.com/opscode/cookbooks/tree/master/gnu_parallel
4931 * Man page examples translated into Japanese. Thanks to Koshigoe.
4932 http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13
4934 * GNU Parallel will be presented at:
4935 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4936 - OSAA.dk, Aarhus, 2011-04-12
4938 * Video of presentation from FSCONS 2010-11-07. The presenter was
4939 _really_ hoarse that day (Something to do with loads of alcohol the
4940 night before). http://vimeo.com/20838834
4942 * Review with examples in German. Thanks to M. Nieberg.
4943 http://kenntwas.de/2011/linux/gnu-parallel/
4945 * A review of the --pipe option in German. Thanks to Mathias Huber.
4946 http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten
4948 * A small example of grepping maillogs. Thanks to François Maillet.
4949 http://www.francoismaillet.com/blog/?p=399
4951 * Using GNU Parallel instead of xargs. Thanks to James Cuff.
4952 http://blog.jcuff.net/2011/02/on-train-ride-in.html
4954 * Bug fixes and man page updates.
4959 * --pipe splits piped data into blocks. Each block is piped to a
4960 program for processing. The piping and the programs will be run in
4961 parallel. Useful if the data you want to process is data for a
4962 program and not arguments.
4964 * --blocksize sets the blocksize in bytes for --pipe. The blocksize is
4965 approximate. It can deviate as much as the size of one record.
4968 * --recstart sets the string matching the start of a
4969 record. Default is "".
4971 * --recend sets the string matching the end of a
4972 record. Default is '\n'. To specify none use --recend "".
4974 If both --recstart and --recend are set, the end of a record must be
4975 followed immediately by a start of a record. This is useful if
4976 either recend or recstart can occur in the middle of a record.
4978 * --remove-rec-sep removes the string matched by --recstart and
4981 * --regexp will make GNU Parallel treat --recstart and --recend as
4982 regular expressions.
4984 * --output-as-files will put the output of the programs into files and
4985 instead of giving the output GNU Parallel will output the name of
4988 * -N if used with --pipe sets the number of records to read.
4990 * New video showing --pipe at
4991 http://www.youtube.com/watch?v=1ntxT-47VPA
4993 * GNU Parallel was presented at FOSDEM.
4995 * Article in USENIX Magazine ;login: (print)
4996 http://www.usenix.org/publications/login/2011-02/
4998 * GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
4999 https://www.ohloh.net/p/gnu-parallel
5001 * Advanced recursive example. Thanks to Ruarí Ødegaard.
5002 http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu
5004 * Small example on using GNU Parallel through 0install (German).
5005 http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/
5007 * Bug fixes and man page updates.
5012 * --joblog makes a simple log of completed jobs.
5014 * -X now spreads arguments between job slots when reaching last
5015 argument. Use -j1 to avoid this.
5017 * People on the email list have voted -j+0 to be the new default
5020 * First review in Polish. Thanks to Patryk Krawaczyński.
5021 http://nfsec.pl/root/2458
5023 * Review in Spanish (in print).
5024 https://www.linux-magazine.es/issue/67/moreinfo.html
5026 * Review in English. Thanks to Brian Gough.
5027 http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/
5029 * Review in French. Thanks to Denis Dordoigne.
5030 http://linuxfr.org/2010/12/29/27715.html
5032 * Review in Spanish.
5033 http://gufete.net/index.php?entry=entry110116-200022
5035 * Article with advanced recursive example. Thanks to Ruarí Ødegaard
5036 http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel
5038 * Use case for memcache.
5039 http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/
5041 * Bug fixes and man page updates.
5046 * GNU niceload is now part of GNU Parallel. GNU niceload slows down a
5047 program if the load average is above a certain limit.
5049 * Implemented --tmpdir to buffer standard output and standard error in
5052 * Implemented --load to wait until the load is below a limit before
5053 starting another job on that computer.
5055 * Implemented --nice set the niceness of jobs running both locally and
5058 * Implemented --dry-run to print the job without running it.
5060 * Implemented --tty as the old default of assigning a tty to the first
5061 job causes problems.
5063 * Review with focus on clusters. Thanks to Taylor Gillespie
5064 http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html
5066 * Review with focus on protein similarity.
5067 http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel
5069 * Review in Spanish.
5070 http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux
5072 * Quite a few bug fixes and man page updates.
5077 * Implemented {/} for the input line with the path removed (basename).
5079 * Implemented {/.} for the input line with extension and path removed
5082 * Output from --progress is now sent to standard error instead of
5085 * --eta was broken and counted down from 0. Now fixed.
5087 * Standard output and standard error are flushed after every job so if
5088 standard output does not end with a newline it will still be grouped
5089 with the rest of standard output.
5091 * --command, -c, --file, and -f are now removed as options. They were
5092 never used in practice.
5094 * GetOptionsFromArray rewritten to work with old Perl libraries.
5096 * The file COPYING now contains the GNU General Public License 3
5098 * Major rewrite to make the code more object oriented and easier to
5099 maintain in the future.
5104 * Using -j myfile the number of jobs can be changed while GNU Parallel
5105 is running simply by changing the content of myfile.
5107 * Implemented --profile to use different .parallel/config for
5108 different situations.
5110 * Ugly newlines in $PARALLEL and .parallel/config are no longer
5111 needed. Instead you have to use \ in front of special shell
5114 * --workdir puts the files transferred to remote machines in a
5115 specified directory.
5117 * $PARALLEL_PID is set to the process id of GNU Parallel.
5119 * $PARALLEL_SEQ is set to the sequence number of the job.
5121 * -v now only shows the command to run. Use -v -v to show the
5124 * Slow spawning error is now only a warning.
5126 * If stdin is a tty and input is read from stdin you now get a
5129 * GNU sql: \n and \x0a in arguments is replaced with newline.
5131 * Patch for Debian package and spelling mistakes. Thanks to Rogério
5132 Brito <rbrito at ime dot usp dot br>
5134 * Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
5135 palardy at gmail dot com>
5137 * FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>
5139 * Pardus package. Thanks to Fethican Coşkuner
5140 <fethicanc at gmail dot com>
5142 * First review in Chinese. Thanks to 曾義峰:
5143 http://antbsd.twbbs.org/~ant/wordpress/?p=2876
5145 * First review in print:
5146 http://www.linux-magazine.com/Issues/2010 Nov 2010
5148 * First review in Spanish:
5149 http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando
5151 * First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
5153 http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html
5155 * Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
5156 http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life
5158 * 5000 views of the intro video:
5159 http://www.youtube.com/watch?v=OpaiGYxkSuQ
5161 * As usual a bunch of bugfixes and more usage examples in the man
5164 * GNU Parallel was presented at FSCONS 2010-11-07:
5165 http://www.fscons.org/fs/gnu-parallel Hopefully the
5166 video will be online soon.
5171 * See GNU Parallel live at FSCONS 2010-11-07:
5172 http://www.fscons.org/fs/gnu-parallel
5174 * Untested Debian and xUbuntu packages available through OpenSUSE
5176 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
5178 * Using --retries a job will be retried on another computer if it
5179 fails. This is useful if some jobs fail for no apparent reason (such
5180 as network failure).
5182 * BSD xargs -o (open /dev/tty) is now default for the job running in
5183 foreground. Useful for interactive commands like:
5184 ls | parallel -Xuj1 vi
5186 * GNU sql now supports SQLite.
5188 * Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.
5190 * GNU sql now support --list-tables
5192 * Alias for DBURL can contain '?query' part with %-quoting.
5197 * Using --shebang GNU Parallel can be used as the parser for a script.
5198 E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
5201 * First community generated bugfixes
5203 * Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
5204 at altlinux dot org>
5206 * Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
5207 <sunfreeware at gmail.com>
5209 * Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
5210 available through OpenSUSE build service:
5211 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
5213 * Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
5214 http://www.andrew-mcfague.com/linux/utilities-linux/
5215 commands-every-serious-nix-user-should-know/#parallel
5217 * First 1000 views of the intro video
5219 * sql - a small script to access sql bases from the command line which
5220 is a handy companion to parallel --colsep
5225 * Counting semaphore functionality: start a job in the background. If
5226 N jobs are already running, wait for one to complete. Examples:
5227 sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
5228 sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait
5230 * With --colsep a table can be used as input. Example:
5231 cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}
5233 * --trim can remove white space around arguments.
5235 * --sshloginfile '..' means use ~/.parallel/sshloginfile
5237 * Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
5240 * OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
5243 * NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>
5245 * Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
5246 Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>
5248 * Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
5249 Thanks to Phil Sung <psung at alum dot mit dot edu>
5254 * Arguments can now be given on the command line. Example:
5255 parallel bzip2 ::: *.txt
5257 * xapply like functionality. Example:
5258 parallel diff {1} {2} :::: filelist1 filelist2
5259 parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2
5261 * Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>
5263 * Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
5266 * -L -l -n -s now implies -X unless -m is set
5271 * New video showing the new options.
5272 http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
5273 http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/
5275 * 100% options complete with xargs. All options for xargs can now be
5276 used in GNU Parallel - even the more exotic.
5278 * --basefile for transferring basedata. When running jobs on remote
5279 computers --basefile will transfer files before the first jobs is
5280 run. It can be used to transfer data that remains the same for each
5281 job such as scripts or lookup tables.
5283 * --progress shows progress. To see how many jobs is running on each
5284 server use --progress. It can be turned on even after GNU Parallel
5287 * --eta shows estimated time left in seconds.
5289 * --halt-on-error stops if an error occurs. GNU Parallel will default
5290 to run all jobs - even if some of them fail. With --halt-on-error
5291 GNU Parallel can ignore errors, wait for the currently running jobs
5292 to finish, or stop immediately when an error occurs.
5297 * GNU Parallel now has support for running jobs on remote machines
5299 * Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
5300 http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech
5305 * GNU Parallel is now official GNU software