5 * sash is no longer supported as shell.
7 * --retries 0 is an alias for --retries 2147483647.
9 * --shell-completion returns shell completion code.
11 * --ssh-login-file reloads every second.
13 * --parset is replaced with --_parset because it is only used internally.
15 * sem --pipe passes STDIN (standard input) to the command.
17 * Bug fixes and man page updates.
24 * --sshlogin user:password@host is now supported by using sshpass.
26 * Bug fixes and man page updates.
28 News about GNU Parallel:
30 * Bash: GNU Parallel with Curl
31 https://gist.github.com/CMCDragonkai/5914e02df62137e47f32?permalink_comment_id=2617456
33 * The Pipe Operator Explained
34 https://medium.com/geekculture/the-pipe-operator-explained-cbd41e23775a
41 * Encoding of remote commands has changed. This limits the length of
42 remote commands to less than half. It also requires $REMOTE_TMPDIR
43 to be writable. It makes this release beta quality.
45 * Time functions hh_mm_ss() hhmmss() hh_mm() hhmm() are now available
48 * Many options in the man page for parallel now has 'see also' for
51 * parallel_options_map.pdf is a map showing which options other
54 * {uniq} added to --plus to only run jobs with unique values.
56 * sem --fg exits with the exit code of the job.
58 * Bug fixes and man page updates.
65 * GNU Parallel turned 20 on the 2022-01-06
66 https://www.gnu.org/software/parallel/20th-birthday.html
68 * Bug fixes and man page updates.
70 News about GNU Parallel:
72 * Save Time with Modern Search Techniques
73 https://www.eventbrite.com/e/ohio-information-security-forum-january-2022-monthly-meeting-tickets-240632737997
75 * Bash "Fail immediately if any fails"
76 https://morioh.com/p/a01b883dc57c
78 * Re-encoding the EmacsConf videos with FFmpeg and GNU Parallel
79 https://sachachua.com/blog/2021/12/re-encoding-the-emacsconf-videos-with-ffmpeg-and-gnu-parallel/
81 * Bash 平行 https://learntutorials.net/ja/bash/topic/10778/%E5%B9%B3%E8%A1%8C
88 * Bug fixes and man page updates.
90 News about GNU Parallel:
92 * The first version of Parallel will be 20 years on 2022-01-06
94 * HerrComp Intro HPC gnu parallel
95 https://www.youtube.com/watch?v=tcgjKWfgWQY
98 https://qiita.com/toramili/items/44a770cfb9ef1edc9e26
100 * How To Install parallel on Ubuntu 20.04
101 https://installati.one/ubuntu/20.04/parallel/
103 * Distributing embarrassingly parallel tasks GNU Parallel
104 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
111 * Bug fixes and man page updates.
113 News about GNU Parallel:
115 * Otimizando o seu Hacking com o GNU Parallel - Mateus Buogo
116 https://www.youtube.com/watch?v=xIpPPZXDKGU
118 * SMACK 12 - Do it faster! Simple ways to use all those cores (and
119 GPUs) efficiently. https://www.youtube.com/watch?v=lXDGY7NvOYk
126 * Don't postpone output until $jobslots jobs have been started.
128 * Bug fixes and man page updates.
130 News about GNU Parallel:
132 * How to Install GNU Parallel using Anaconda | Linux
133 https://www.youtube.com/watch?v=UwDNVP-L0qA
135 * Install GNU Parallel from source code | Linux
136 https://www.youtube.com/watch?v=PIyJH4ben5o
138 * Compiling GNU Parallel on CentOS-7
139 https://thelinuxcluster.com/2021/10/19/compiling-gnu-parallel-on-centos-7/
146 * Bug fixes and man page updates.
148 News about GNU Parallel:
150 * 3 Programs that will Level Up your Bash Game
151 https://medium.com/codex/3-programs-that-will-level-up-your-bash-game-bf14e17e2291
153 * I Summarized 100+ Command-Line Tools for Data Scientists in 15
155 https://towardsdatascience.com/i-summarized-100-command-line-tools-for-data-scientists-in-15-minutes-976def544ffe
157 * Speed up Your Builds by Parallelizing
158 https://www.incredibuild.com/blog/speed-up-your-builds-by-parallelizing
160 * Bash: GNU Parallel with Curl
161 https://gist.github.com/dinh/93b936a55de9a331199d6582bc2921d2
168 * --ctag/--ctagstring colors the tag in different colors for each job.
170 * You can use unit prefixes (k, m, g, etc) with -n -N -L.
172 * Bug fixes and man page updates.
174 News about GNU Parallel:
176 * Parallelising jobs with GNU parallel
177 https://blog.ronin.cloud/gnu-parallel/
179 * Use multiple CPU Cores with your Linux commands - awk, sed, bzip2,
180 grep, wc, etc. https://cdmana.com/2021/07/20210728132344693t.html
182 * How to execute commands in parallel in Linux
183 https://net2.com/how-to-execute-commands-in-parallel-in-linux/
190 * --results no longer prints the result to standard output (stdout) as
192 https://lists.gnu.org/archive/html/parallel/2020-12/msg00003.html
194 * parset supports associative arrays in bash, ksh, zsh.
196 * Online HTML is now generated by Sphinx.
198 * Bug fixes and man page updates.
200 News about GNU Parallel:
202 * Cleaning Up Scanned Documents with Open Source Tools
203 https://kaerumy.medium.com/cleaning-up-scanned-documents-with-open-source-tools-9d87e15305b
210 * Bug fixes and man page updates.
212 News about GNU Parallel:
214 * How to use GNU Parallel
215 https://techtipbits.com/linux/how-to-use-gnu-parallel/
217 * How to Speed Up Bash Scripts with Multithreading and GNU Parallel
218 https://adamtheautomator.com/how-to-speed-up-bash-scripts-with-multithreading-and-gnu-parallel/
220 * Use Parallel to split by line
221 https://madflex.de/use-parallel-to-split-by-line/
223 * Optimizing long batch processes or ETL by using buff/cache properly
224 II (parallelizing network operations)
225 http://www.elsotanillo.net/2021/06/optimizing-long-batch-processes-or-etl-by-using-buff-cache-properly-ii-parallelizing-network-operations/
227 * Parallelization 3: GNU Parallel https://www.youtube.com/watch?v=Rl06WD60afA
234 * --plus includes {%%regexp} and {##regexp}.
236 * Bug fixes and man page updates.
238 News about GNU Parallel:
240 * Batch Calculate and Verify MD5 Checksum With GNU Parallel
241 https://omicx.cc/posts/2021-04-28-calculate-and-verify-md5-checksum-with-gnu-parallel/
243 * HerrComp Gnu parallel, c++11 threads 2021 04 28
244 https://www.youtube.com/watch?v=wDd9F9nn0qA
246 * Distributing embarrassingly parallel tasks GNU Parallel
247 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
249 * Job Parallelization on Niagara
250 https://www.maryamdaryalal.com/post/job-parallelization-on-niagara
252 * Use Parallel to split by line
253 https://madflex.de/use-parallel-to-split-by-line/
255 * m1 multi-core batch convert with gpu parallel + ffmpeg
256 https://www.youtube.com/watch?v=hAuc0YsXv6A
263 * Bug fixes and man page updates.
265 News about GNU Parallel:
267 * Bioinformatics tutorials - linux and shell advanced - parallel
268 https://www.youtube.com/watch?v=5leL8pyl0XA
270 * GNU Parallel for quick gains
271 https://edbennett.github.io/high-performance-python/04-gnu-parallel/index.html
273 * Processing Linux Commands in Parallel
274 https://www.baeldung.com/linux/processing-commands-in-parallel
277 https://docs-research-it.berkeley.edu/services/high-performance-computing/user-guide/running-your-jobs/gnu-parallel/
279 * GNU Parallel 활용 가이드https://genoglobe.com/kribb/gnu_parallel
281 * Parallel Grep and Awk
282 https://www.highonscience.com/blog/2021/03/21/parallel-grep/
284 * Getting things done with shell scripting
285 https://doma.dev/blog/get-things-done-with-bash/
290 * Bug fixes and man page updates.
292 News about GNU Parallel:
294 * The very first version of Parallel dated 2002-01-06 was found in an
305 (".PHONY : job$jobnr\n",
309 unshift @makefile, "all : ",(map { "job$_ " } 1 .. $jobnr),"\n";
311 open (MAKE, "| make -k -f - -j $processes") || die;
312 print MAKE @makefile;
315 * Introduction to GNU Parallel
316 https://www.youtube.com/watch?v=Kj-6JkAqw-8
318 * Using GNU Parallel with GooseSLURM
319 https://readthedocs.org/projects/gooseslurm/downloads/pdf/latest/#chapter.7
322 https://github.com/lijingbu/omics/blob/main/why_gnu_parallel.md
327 * --filter only run jobs where the filter is true. The filter can
328 contain replacement strings and Perl code such as: '{1} < {2}+1'
330 * --template takes a text file as a template with replacement
331 strings. Then it replaces the replacement strings and saves it
332 under a new filename.
334 * --plus implements {0%} {0#} replacement string for zero padded slot
337 * Warn that you probably mean -d '\r\n' if the first 3 values end in
340 * {= perlexpression =} must return the same value, if run twice on the
343 * Man pages available as .rst-format.
345 * Bug fixes and man page updates.
347 News about GNU Parallel:
349 * A short tutorial on Gnu Parallel
350 https://www.polarmicrobes.org/a-short-tutorial-on-gnu-parallel/
352 * 5 reasons why I love coding on Linux
353 https://opensource.com/article/21/2/linux-programming
355 * Simple Tutorial to install & use GNU Parallel
356 https://medium.com/analytics-vidhya/simple-tutorial-to-install-use-gnu-parallel-79251120d618
358 * LiDO3 - first contact
359 https://www.lido.tu-dortmund.de/cms/de/LiDO3/LiDO3_first_contact_handout.pdf
361 * Rill Stage 2-1: Ways of command-line data analysis
362 https://blog.jastix.biz/post/rill-stage-2-1-cli-data-analysis/
364 * Introduction to GNU Parallel
365 https://blog.knoldus.com/introduction-to-gnu-parallel/
367 * GNU Parallel https://www.hahwul.com/cullinan/parallel/
372 * --memsuspend suspends jobs when there is little memory free. This
373 way you can run jobs in parallel that added up potentially will take
374 up more RAM than is available.
376 * $PARALLEL_ARGHOSTGROUPS and the replacement string {agrp} will give
377 the hostgroup given on the argument when using --hostgroup.
379 * Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss()
380 yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm()
381 yyyymmdd() hash($str)
383 * Bug fixes and man page updates.
385 News about GNU Parallel:
387 * Software Engineering For Scientists
388 https://canvas.stanford.edu/courses/133091
390 * Optional Individual Submission 4 Job Handling - GNU Parallel
391 https://www.youtube.com/watch?v=-tX0bFAYAxM
393 * 关于gnu parallel:GnuParallel:在集群上并行化脚本,脚本将文件写入主
394 节点https://www.codenong.com/25172209/
397 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
402 * --pipe engine changed making --pipe alpha quality.
404 * --results -.json outputs results as JSON objects on stdout (standard
407 * --delay 123auto will auto-adjust --delay. If jobs fail due to being
408 spawned too quickly, --delay will exponentially increase.
410 * --plus sets {hgrp} that gives the intersection of the hostgroups of
411 the job and the sshlogin that the job is run on.
413 * Bug fixes and man page updates.
415 News about GNU Parallel:
417 * Best practices for accelerating data migrations using AWS Snowball
419 https://aws.amazon.com/blogs/storage/best-practices-for-accelerating-data-migrations-using-aws-snowball-edge/
421 * Pass the Output of a Command as an Argument for Another
422 https://www.baeldung.com/linux/pass-cmd-output-as-an-argument
424 * Warwick RSE Drop-in - Workflow Management Part 2 - GNU Parallel
425 https://www.youtube.com/watch?v=t_v2Otgt87g
430 * Bug fixes and man page updates.
432 News about GNU Parallel:
434 * https://bash-prompt.net/guides/gnu-parallel-multi-server/
439 * --termseq now works for jobs running remotely.
441 * parsort: Performance optimized for 64-core machines.
443 * Bug fixes and man page updates.
445 News about GNU Parallel:
447 * Juan Sierra Pons has made a testimonial:
448 http://www.elsotanillo.net/wp-content/uploads/GnuParallel_JuanSierraPons.mp4
450 * 「翻译」在生物信息学中使用 GNU-Parallel
451 https://cloud.tencent.com/developer/article/1705499
456 * New CPU detection for GNU/Linux.
458 * Bug fixes and man page updates.
460 News about GNU Parallel:
462 * Aug 21, 2020 - More Unix tools
463 https://floki.blog/2020/08/more_unix_tools
470 * Max command line length is changed for MacOS - making this version
471 beta quality for MacOS.
473 * Bug fixes and man page updates.
480 * No new functionality
482 * Bug fixes and man page updates.
484 News about GNU Parallel:
486 * Tips for Running Jobs on your VM
487 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
489 * Introduction to GNU Parallel: Parallelizing Massive Individual Tasks
490 https://www.youtube.com/watch?v=QSFLTEyCKvo
493 http://www.hpc.lsu.edu/training/weekly-materials/2020-Spring/GNUParallel_Spring_2020.pdf
495 * Linux-Fu: Parallel Universe
496 https://hackaday.com/2020/06/29/linux-fu-parallel-universe/
498 * Resumable batch jobs with gnu parallel https://igor.io/parallel/
500 * Introducing Parallel into Shell
501 https://www.petelawson.com/post/parallel-in-shell/
503 * AV1 encoding parallelization with GNU Parallel
504 https://www.reddit.com/r/AV1/comments/fjvqp9/av1_encoding_parallelization_with_gnu_parallel/
506 * Beschleunigte Befehlsbearbeitung mit GNU Parallel
507 https://www.linux-community.de/ausgaben/linuxuser/2013/06/beschleunigte-befehlsbearbeitung-mit-gnu-parallel/
514 * No new functionality
516 * Bug fixes and man page updates.
518 News about GNU Parallel:
520 * GNU Parallel is used at NERSC:
521 https://www.nersc.gov/assets/Uploads/08-Workflows-20200616.pdf
523 * Resumable batch jobs with GNU Parallel https://igor.io/parallel/
525 * Lab Meeting technical talk
526 https://www.slideshare.net/hoffmanlab/gnu-parallel-194030490
528 * Open Sky Software Website Credits
529 https://www.openskysoftware.com/site-credits.htm
531 * Speed up your Python Scripts using Ubuntu and GNU Parallel
532 https://ecce.esri.ca/wpecce/2019/12/24/speed-up-your-python-scripts-using-ubuntu-and-gnu-parallel/
534 * Indispensable command-line tools
535 https://negfeedback.blogspot.com/2020/05/indispensable-command-line-tools.html
537 * GNU Parallel for simulations
538 http://pdebuyl.be/blog/2020/gnu-parallel-for-simulations.html
540 * Introduction to GNU parallel
541 https://bioinformaticsworkbook.org/Appendix/GNUparallel/GNU_parallel_examples.html
548 * While running a job $PARALLEL_JOBSLOT is the jobslot of the job. It
549 is equal to {%} unless the job is being retried. See {%} for
552 * While running a job $PARALLEL_SSHLOGIN is the sshlogin line with
553 number of cores removed. E.g. '4//usr/bin/specialssh user@host'
554 becomes: '/usr/bin/specialssh user@host'
556 * While running a job $PARALLEL_SSHHOST is the host part of an
557 sshlogin line. E.g. '4//usr/bin/specialssh user@host' becomes:
560 * --plus activates the replacement strings {slot} = $PARALLEL_JOBSLOT,
561 {sshlogin} = $PARALLEL_SSHLOGIN, {host} = $PARALLEL_SSHHOST
563 * Bug fixes and man page updates.
565 News about GNU Parallel:
567 * Portable Batch System (PBS) & GNU Parallel - Running a Program
568 Multiple Times in Parallel
569 https://www.youtube.com/watch?v=6ccbWu6Befo
571 * GNU Parallel przykład https://www.youtube.com/watch?v=gs_wG4Kt2G4
573 * Demo of LINUX APP - GNU PARALLEL - running multiple Gstreamer webcam
574 .sh scripts with only 1 command
575 https://www.youtube.com/watch?v=trQuA_wmWjg
580 This release celebrates GNU Parallel's 10 years as a GNU tool:
582 > commit ed2dfb1043768154d4e7678e01e10287155fa834
583 > Author: Ole Tange <ole@tange.dk>
584 > Date: Thu Apr 22 01:23:00 2010 +0200
586 > Name change: Parallel is now GNU Parallel.
587 > Basic structure for sshlogin and sshloginfile.
591 * parsort makes GNU sort run faster for files with more than 1M lines.
593 * Bug fixes and man page updates.
595 News about GNU Parallel:
597 * Several clusters have updated their documentation of GNU Parallel:
598 https://www.grid5000.fr/w/GNU_Parallel
599 https://research-it.berkeley.edu/virtual-training-running-jobs-parallel-savio
600 http://www.hpc.lsu.edu/training/archive/tutorials.php
602 * add_pho uses GNU Parallel: https://github.com/SeedlingsBabylab/add_pho
604 * GNU parallel使用笔记https://zhuanlan.zhihu.com/p/37340011
606 * Virtual Workshop: Running Jobs in Parallel on Savio
607 https://ais.berkeley.edu/events/virtual-workshop-running-jobs-parallel-savio/2020-04-20
609 * Free Concurrency with GNU Parallel
610 https://phili.pe/posts/free-concurrency-with-gnu-parallel/
615 * Bug fixes and man page updates.
617 News about GNU Parallel:
619 * The GNU Parallel course in Copenhagen is cancelled
620 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
622 * The GNU Parallel course in Århus is cancelled
623 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
625 * The 10 year anniversary may be cancelled, see
626 https://www.gnu.org/software/parallel/10-years-anniversary.html
628 * Running shell commands in parallel, via GNU Parallel
629 https://dev.to/saveriomiroddi/running-shell-commands-in-parallel-via-gnu-parallel-3a72
631 * Faster nmap scanning with the help of GNU parallel
632 https://badshah.io/experiment/faster-nmap-scanning-with-the-help-of-gnu-parallel/
637 * Bug fixes and man page updates.
642 * --blocktimeout dur - Time out for reading block when using
643 --pipe. If it takes longer than dur to read a full block, use the
644 partial block read so far.
646 * Bug fixes and man page updates.
648 News about GNU Parallel:
650 * GNU Parallel course in Copenhagen
651 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
653 * GNU Parallel course in Århus
654 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
656 * GNU Parallel pour accélérer vos process sous Linux
657 https://www.yvonh.com/gnu-parallel-pour-accelerer-vos-process-sous-linux/
659 * How to copy a file to multiple directories in Linux
660 https://net2.com/how-to-copy-a-file-to-multiple-directories-in-linux/
662 * Running linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
667 * GNU Parallel course in Copenhagen
668 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
670 * GNU Parallel course in Århus
671 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
673 * GNU Parallel is used in
674 https://github.com/JeffersonLab/rfw_tsf_extractor
676 * Bug fixes and man page updates.
681 * GNU Parallel was presented at Driving IT. Slides:
682 cloud.prosa.dk/s/drivingit
684 * Restarting supervisord processes in parallel
685 https://blog.naderman.de/2019/11/14/restarting-supervisord-processes-in-parallel/
687 * Using GNU Parallel to Create Archives Faster
688 https://www.reddit.com/r/DataHoarder/comments/dsgmhc/parallel_archiving_techniques/
690 * Bug fixes and man page updates.
695 * --tee will use --output-error=warn-nopipe if supported by tee.
697 * GNU Parallel will be presented at Driving IT 2019:
698 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
700 * UMN Duluth: Job parallelization with task arrays and GNU parallel
701 https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
703 * Genome updater uses GNU Parallel
704 https://github.com/pirovc/genome_updater
706 * Using GNU-Parallel for bioinformatics
707 https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
709 * Speeding up PostgreSQL ETL pipeline with the help of GODS
710 https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
712 * Runing linux commands in parallel
713 https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
715 * Research Computing University of Colorado Boulder contains an intro
717 https://readthedocs.org/projects/curc/downloads/pdf/latest/
719 * 如何使用Parallel在Shell中并行执行命令
720 https://www.myfreax.com/gnu-parallel/
722 * 如何测试 Amazon Elastic File System
723 https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
725 * Bug fixes and man page updates.
730 * --nice is now inherited by the nice level that GNU Parallel is
731 started at. So 'nice -n10 parallel' will also cause remote jobs to
732 be run at nice level 10.
734 * --delay is now accurate to within 10 ms
736 * GNU Parallel will be presented at Driving IT 2019:
737 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
739 * Greenland Ice Sheet solid ice discharge from 1986 through 2017
740 https://www.earth-syst-sci-data.net/11/769/2019/essd-11-769-2019.pdf
742 * App Center Cloud Build Machines > Installed Software > Utilities
743 https://docs.microsoft.com/en-us/appcenter/build/software
745 * Curryfinger - SNI & Host header spoofing utility
746 https://dualuse.io/blog/curryfinger/
749 https://wiki.cac.washington.edu/display/hyakusers/Hyak+parallel-sql
751 * A meditation on analysing data with Perl in parallel using GNU Parallel
752 https://www.reddit.com/r/perl/comments/cyo2qc/a_meditation_on_analysing_data_with_perl_in/
754 * Accélérer ses tâches avec GNU Parallel et les lots de tâches (UL)
755 https://www.eventbrite.ca/e/inscription-accelerer-ses-taches-avec-gnu-parallel-et-les-lots-de-taches-ul-71412840729
757 * RMACC Summit GNU Parallel
758 https://curc.readthedocs.io/en/latest/software/GNUParallel.html
760 * Introducing Parallel into Shell
761 https://petelawson.com/post/parallel-in-shell/
763 * Linux Productivity Tools
764 https://www.usenix.org/conference/lisa19/presentation/maheshwari
766 * Gnu/parallel + Nfs 实现共享文件网络的并发计算等操作
767 http://atomicer.cn/2018/01/18/gnu-parallel-nfs-%E5%AE%9E%E7%8E%B0%E5%85%B1%E4%BA%AB%E6%96%87%E4%BB%B6%E7%BD%91%E7%BB%9C%E7%9A%84%E5%B9%B6%E5%8F%91%E8%AE%A1%E7%AE%97%E7%AD%89%E6%93%8D%E4%BD%9C/#more
769 * Bug fixes and man page updates.
774 * GNU Parallel will be presented at Driving IT 2019:
775 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it#beskrivelse
777 * Linux Productivity Tools
778 https://www.usenix.org/conference/lisa19/presentation/maheshwari
780 * Improve your reconnaissance performance by using GNU Parallel
781 https://mailchi.mp/3f46ceb46357/improve-your-reconnaissance-performance-by-using-gnu-parallel
783 * Paralel İşler / İşlemler / Programlar Bash’de Nasıl Çalıştırılır?
784 https://kaleinfo.com/2019/07/29/paralel-isler-islemler-programlar-bashde-nasil-calistirilir-2/
786 * Use POLYBAR to change WALLPAPER with GNU Parallel
787 https://www.youtube.com/watch?v=rjYg-b_eiRU
789 * Finding the Balance Between Speed & Accuracy During an Internet-wide
791 https://captmeelo.com/pentest/2019/07/29/port-scanning.html
793 * GNU Parallel Ryugu released
794 https://linuxreviews.org/GNU_Parallel_Ryugu_released
796 * CO2017 - CW1 - Operating Systems & Networks - Shell scripting
797 http://www.7daixie.com/2019071646302396.html
799 * Bug fixes and man page updates.
804 * {= uq; =} causes the replacement string to be unquoted. Example:
805 parallel echo '{=uq;=}.jpg' ::: '*'
807 * --tagstring {=...=} is now evaluated for each line with --linebuffer.
809 * Use -J ./profile to read a profile in current dir.
811 * Speedup of startup by 40%: Find the parent shell differently on
812 GNU/Linux, cache information about the CPU and which setpgrp method
813 to use to make GNU Parallel start 40% faster.
815 * $PARALLEL_SSHLOGIN can be used in the command line.
817 * Occasionally sane: Simple usage of GNU parallel
818 https://vfoley.xyz/parallel/
820 * How to run multiple bash scripts in parallel
821 https://techieroop.com/how-to-run-multiple-bash-scripts-in-parallel/
823 * Announcing Oracle Solaris 11.4 SRU10
824 https://blogs.oracle.com/solaris/announcing-oracle-solaris-114-sru10
826 * Руководство по использованию GNU Parallel https://zalinux.ru/?p=2623
828 * Bug fixes and man page updates.
833 * --shard can now take a column name and optionally a perl
834 expression. Similar to --group-by and replacement strings.
836 * Using AWK and R to parse 25tb
837 https://livefreeordichotomize.com/2019/06/04/using_awk_and_r_to_parse_25tb/
839 * Parallel and Visual testing with Behat
840 http://parallelandvisualtestingwithbehat.blogspot.com/p/blog-page.html
842 * 维基百科,自由的百科全书https://zh.wikipedia.org/wiki/GNU_parallel
844 * Bug fixes and man page updates.
849 * --group-by groups lines depending on value of a column. The value
852 * How to compress (bzip / gzip) a very large text quickly?
853 https://medium.com/@gchandra/how-to-compress-bzip-gzip-a-very-large-text-quickly-27c11f4c6681
855 * Simple tutorial to install & use GNU Parallel
856 https://medium.com/@gchandra/simple-tutorial-to-install-use-gnu-parallel-79251120d618
858 * Introducing Parallel into Shell
859 https://petelawson.com/post/parallel-in-shell/
861 * Bug fixes and man page updates.
866 * Invitation to the 10 years anniversary next year.
868 * Bug fixes and man page updates.
873 * SIGTERM is changed to SIGHUP, so sending SIGHUP will make GNU
874 Parallel start no more jobs, but wait for running jobs to finish.
876 * SIGTERM SIGTERM is changed to SIGTERM, so sending SIGTERM will make
877 GNU Parallel kill all running jobs.
879 * GNU Parallel now includes a cheat sheet: parallel_cheat.pdf
881 * High Throughput Computing on RMACC Summit and Beyond
882 https://calendar.colorado.edu/event/high_throughput_computing_on_rmacc_summit_and_beyond#.XH2NBhB7mV4
884 * GNU Parallel Cheat Sheet by cpriest
885 https://www.cheatography.com/cpriest/cheat-sheets/gnu-parallel/
887 * Use Multiple CPU Cores(Parallelize) with Single Threaded Linux
889 http://xensoft.com/use-multiple-cpu-cores-parallelize-with-single-threaded-linux-commands/
891 * Bug fixes and man page updates.
896 * --shard makes it possible to send input to a the same jobslot based
897 on the value in one column of the input. It is similar to sharding
900 * --shellquote --shellquote will shell quote the input twice.
902 * GNU Parallel is available in Termux
903 https://github.com/termux/termux-packages/tree/master/packages/parallel
905 * Linux, command line & MetaCentrum
906 https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf
908 * How to supercharge your bash workflows with GNU parallel
909 https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141
911 * GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI
913 * Parallelizing Freesurfer blog.cogneurostats.com/?p=148
915 * FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw
917 * FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/
919 * Come ridimensionare 10k foto con la riga di comando
920 https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
922 * 并行处理 – Gnu Parallel:嵌套并行
923 https://codeday.me/bug/20190122/552902.html
925 * シェルスクリプトでコマンドを並列実行する方法
926 https://www.kwbtblog.com/entry/2019/01/12/020423
928 * Bug fixes and man page updates.
933 * 'env_parallel --end-session' makes it possible to nest 'env_parallel
936 * Using GNU Parallel in pentesting https://youtu.be/mZ0OUJmkIlA?t=873
938 * Supercomputer Workshop: Feb 1&7
939 http://www.ece.unm.edu/featured-students/supercomputer-workshop-feb-17.html
941 * Bug fixes and man page updates.
946 * Better /proc/cpuinfo parser.
948 * Simpler job scheduling flow.
950 * MPGI Workshop: Job Parallelization with Task Arrays and GNU Parallel
951 https://www.msi.umn.edu/tutorials/mpgi-workshop-module-4
953 * CONCOCT uses GNU Parallel
954 https://media.readthedocs.org/pdf/concoct/latest/concoct.pdf
956 * If you use SLURM read
957 https://wiki.hpc.uconn.edu/index.php/Advanced_SLURM
960 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
962 * Bug fixes and man page updates.
967 * Experimental simpler job flow control.
969 * 時間がかかるコマンドを GNU parallel で 並列実行する
970 https://qiita.com//grohiro/items/4db3fa951a4778c5c479
972 * Bug fixes and man page updates.
977 * env_parallel.fish: --session support (alpha quality)
979 * GNU Parallel was cited in: High-throughput sequencing of murine
980 immunoglobulin heavy chain repertoires using single side unique
981 molecular identifiers on an Ion Torrent PGM
982 https://doi.org/10.18632/oncotarget.25493
984 * GNU parallel in Japanese Wikipedia
985 https://ja.wikipedia.org/wiki/GNU_parallel
987 * Outils de paramétrisation des tâches: lots de tâches, GNU Parallel
988 https://www.eventbrite.ca/e/inscription-outils-de-parametrisation-des-taches-lots-de-taches-gnu-parallel-et-bqtools-midi-conference-de-50271076142
990 * Bug fixes and man page updates.
995 * Minix is supported again.
997 * Updated graph showing GNU Parallel's overhead per job for each
998 version. https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1000 * Intro to Computing at CARC includes introduction to GNU Parallel
1001 http://carc.unm.edu/education--training/workshops-and-seminars.html
1003 * Fast-GBS uses GNU Parallel https://bitbucket.org/jerlar73/fast-gbs/wiki/Home
1005 * Belgium at 10 m resolution in July 2018 http://www.cesbio.ups-tlse.fr/multitemp/?p=14116
1007 * Bug fixes and man page updates.
1012 * parset sets exit code.
1014 * How to install GNU Parallel
1015 https://www.techrepublic.com/videos/how-to-install-gnu-parallel/
1017 * Bug fixes and man page updates.
1022 * The quoting engine has been changed. Instead of using \-quoting GNU
1023 Parallel now uses '-quoting in bash/ash/dash/ksh. This should
1024 improve compatibility with different locales. This is a big change
1025 causing this release to be alpha quality.
1027 * The CPU calculation has changed. By default GNU Parallel uses the
1028 number of CPU threads as the number of CPUs. This can be changed to
1029 the number of CPU cores or number of CPU sockets with
1030 --use-cores-instead-of-threads or --use-sockets-instead-of-threads.
1032 * The detected number of sockets, cores, and threads can be shown with
1033 --number-of-sockets, --number-of-cores, and --number-of-threads.
1035 * env_parallel now support mksh using env_parallel.mksh.
1037 * GNU Parallel is distributed as part of Snippy
1038 https://github.com/tseemann/snippy
1040 * GNU Parallel: Ejecutar comandos simultáneamente en Linux
1041 https://esgeeks.com/gnu-parallel-ejecutar-comandos-simultaneo-linux/
1043 * Parallel download genomic data with GNU-Parallel
1044 https://digibio.blogspot.com/search/label/GNU-Parallel
1046 * Bug fixes and man page updates.
1051 * Deal better with multibyte chars by forcing LC_ALL=C.
1053 * GNU Parallel was introduced in Pincount Podcast:
1054 https://pincountpodcast.com/episodes/29.html
1056 * GNU Parallel was shown on Danish national news for 1.7 seconds: dr.dk
1058 * How to run Linux commands simultaneously with GNU Parallel
1059 https://www.techrepublic.com/article/how-to-run-commands-simultaneously-with-gnu-parallel/#ftag=RSS56d97e7
1061 * Easy parallelization with GNU parallel
1062 http://mpharrigan.com/2016/08/02/parallel.html
1064 * GNU Parallel for mutlithreaded tasks
1065 http://slhogle.github.io/2016/gnu-parallel/
1067 * A GNU Parallel Clustering Demo
1068 https://www.crowdsupply.com/ground-electronics/circumference/updates/a-gnu-parallel-clustering-demo
1070 * 使用 GNU Parallel 提高 Linux 命令行执行效率
1071 https://linux.cn/article-9718-1.html
1073 * Ejecutando tareas desde consola simultáneamente con GNU Parallel
1074 https://poesiabinaria.net/2018/06/ejecutando-tareas-desde-consola-simultaneamente-gnu-parallel/
1076 * Cómo ejecutar varias tareas simultáneamente en el terminal con GNU
1078 https://www.ubuntizando.com/como-ejecutar-varias-tareas-simultaneamente-en-el-terminal-con-gnu-parallel/
1080 * GNU Parallel 활용 가이드 http://genoglobe.kr/kribb/gnu_parallel
1082 * Bug fixes and man page updates.
1087 * --tty allows for more programs accessing /dev/tty in parallel. Some
1088 programs require tty access without using it.
1090 * env_parallel --session will record names in current environment in
1091 $PARALLEL_IGNORED_NAMES and exit. It is only used with env_parallel,
1092 and can work like --record-env but in a single session.
1094 * 35 day course: Linux shell scripting and text processing for big
1095 data https://comquest.in/training
1097 * How To Use Your Entire CPU In Bash With Parallel
1098 https://bash-prompt.net/guides/parallell-bash/
1100 * An easy way to run parallel jobs on Stampede2
1101 https://blog.uta.edu/xus/2017/09/29/an-easy-way-to-run-parallel-jobs-on-stampede2/
1103 * Get more done at the Linux command line with GNU Parallel
1104 https://opensource.com/article/18/5/gnu-parallel
1106 * Save Time with Modern Search Techniques
1107 https://www.sans.org/summit-archives/file/summit-archive-1524582079.pdf
1109 * GNU Parallel: haz más cosas simultáneamente en el terminal
1110 https://blog.desdelinux.net/gnu-parallel-haz-mas-cosas-simultaneamente-en-el-terminal/
1112 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
1113 https://www.slideshare.net/koji_matsuda/gnu-parallel
1115 * Bug fixes and man page updates.
1120 * --csv makes GNU Parallel parse the input sources as CSV. When used
1121 with --pipe it only passes full CSV-records.
1123 * Time in --bar is printed as 1d02h03m04s.
1125 * Optimization of --tee: It spawns a process less per value.
1127 * The GNU Parallel 2018 book is now available:
1128 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
1130 * Modern pentest tricks for faster, wider, greater engagement (15)
1131 https://conference.hitb.org/hitbsecconf2018ams/materials/D1%20COMMSEC%20-%20Thomas%20Debize%20-%20Modern%20Pentest%20Tricks%20for%20Faster,%20Wider,%20Greater%20Engagements.pdf
1133 * Running many serial jobs efficiently
1134 https://userinfo.surfsara.nl/documentation/running-many-serial-jobs-efficiently
1136 * GNU Parallel: как сохранить результаты нескольких команд для
1137 переменной? http://fliplinux.com/gnu-parallel-6.html
1139 * Running Multiple Commands in Parallel on a GNU Linux
1140 https://www.youtube.com/watch?v=sHpTywpb4_4
1142 * Klaatu covers the documentation of GNU parallel in episode 12x15
1143 http://gnuworldorder.info/
1145 * Bug fixes and man page updates.
1150 * niceload -p can now take multiple pids separated by comma
1152 * --timeout gives a warning when killing processes
1154 * --embed now uses the same code for all supported shells
1156 * --delay can now take arguments like 1h12m07s
1158 * Parallel. Straight from your command line
1159 https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee
1161 * GNU Parallel was used in POAP-Parallelized Open Babel & Autodock
1162 suite Pipeline https://github.com/inpacdb/POAP
1164 * Pi Cluster Parallel Script First Fire
1165 https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/
1167 * How to Restore MySQL Logical Backup at Maximum Speed
1168 https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/
1170 * Bug fixes and man page updates.
1175 * --embed makes it possible to embed GNU parallel in a shell
1176 script. This is useful if you need to distribute your script to
1177 someone who does not want to install GNU parallel.
1179 * Parallelize Your Large Batches of Small Jobs
1180 https://amito.me/2018/02/Parallelize-Your-Large-Batches-of-Small-Jobs/
1182 * Klaatu expounds upon xargs and talks GNU parallel in episode 12x6
1183 http://gnuworldorder.info/
1185 * How to use parallel to speed up your work
1186 https://mike42.me/blog/how-to-use-parallel-to-speed-up-your-work
1188 * Transient compute clustering with GNU Parallel and sshfs
1189 https://dennismungai.wordpress.com/2018/02/06/transient-compute-clustering-with-gnu-parallel-and-sshfs/
1191 * Useful Examples of ffmpeg and GNU parallel on the command-line
1192 https://dennismungai.wordpress.com/2018/02/06/useful-examples-of-ffmpeg-and-gnu-parallel-on-the-command-line/
1194 * Data Science at the Command Line (Chapter 8.3)
1195 https://www.datascienceatthecommandline.com/
1197 * Bug fixes and man page updates.
1202 * bash / 병렬 https://code.i-harness.com/ko/docs/bash/2a1a
1204 * 15分钟神器gnu parallel 入门观止
1205 http://www.ezilin.com/2018/01/15gnu-parallel.html
1207 * How To Run Multiple Commands In Parallel on Linux
1208 https://www.slashroot.in/how-run-multiple-commands-parallel-linux
1210 * Bug fixes and man page updates.
1215 * env_parset for ash, dash, ksh, sh, zsh
1217 * Automatically create hostgroups if argument ends in @sshlogin
1219 * Tips for running jobs on your VM
1220 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1222 * Node-local scheduling
1223 https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
1225 * GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
1227 * GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
1229 * Using GNU Parallel
1230 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1232 * Bug fixes and man page updates.
1237 * Using GNU Parallel to speed up Google Cloud Infrastructure
1239 https://medium.com/@pczarkowski/using-gnu-parallel-to-speed-up-google-cloud-infrastructure-management-53e5c555ec05
1241 * What is gnu parallel
1242 http://wiki.chpc.ac.za/howto:bioinformatics:gnu-parallel
1244 * Parallel, Scripts, Clusters, & Easy Use
1245 https://chiefio.wordpress.com/2017/11/10/parallel-scripts-clusters-easy-use/
1247 * Bug fixes and man page updates.
1252 * Initial support for XDG Base Directory $XDG_* environment variables.
1254 * Validating half a million TIFF files. Part
1256 https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1258 * Turing data science class: Cluster computing
1259 https://www.turing.ac.uk/events/masterclass-cluster-computing/
1261 * Butlin:Unix for Bioinformatics - advanced tutorial
1262 https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
1264 * พยายามใช้ CPU ให้ครบทุก CORE
1265 https://veer66.wordpress.com/2017/09/02/use-multi-core/
1267 * Examples on using GNU Parallel
1268 https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
1270 * Bug fixes and man page updates.
1275 * Use '--limit myprog' to make a dynamic job limit. Just return 0 to
1276 spawn another job, 1 to not spawn another job, and 2 to kill the
1279 * PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
1282 * Download all of humble bundle books in parallel
1283 https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel
1285 * Bug fixes and man page updates.
1290 * --line-buffer no longer uses tempfiles. This is faster and makes it
1291 possible for a single process to output more data than there is free
1294 * Vote for GNU Parallel's community ads on
1295 http://meta.unix.stackexchange.com/a/4356/2972
1296 http://meta.askubuntu.com/a/16750/22307
1297 http://meta.serverfault.com/a/9040/45704
1299 * Edit images with GNU Parallel and ImageMagick
1300 https://fedoramagazine.org/edit-images-parallel-imagemagick/
1302 * Running Bash Commands in Parallel
1303 https://dzone.com/articles/running-bash-commands-in-parallel-1
1305 * Today I Learned: GNU parallel, plate tectonics
1306 https://medium.com/@nornagon/today-i-learned-gnu-parallel-plate-tectonics-9fcf24045e63
1308 * GNU Parallel Tutorial
1309 https://www.upf.edu/web/sct-sit/gnu-parallel-tutorial
1311 * Validating half a million TIFF files
1312 http://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1314 * Blender and GNU Parallel
1315 https://www.blendernation.com/2017/08/16/blender-gnu-parallel/
1317 * Quick Introduction to GNU Parallel
1318 https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1320 * A simple distributed animation render example using GNU Parallel
1321 https://gitlab.com/skororu/scripts
1323 * Do stuff on things, in parallel
1324 http://blogs.fluidinfo.com/terry/2017/08/05/do-stuff-on-things-in-parallel/
1326 * Bash And GNU Parallel NGS Bidniz
1327 http://ino.pm/outreach/presentations/2014/03/genomics-wranglers/index.html
1329 * Using for loop vs Gnu parallel for BLAST
1330 http://www.ettemalab.org/using-for-loop-vs-gnu-parallel-for-blast/
1332 * 并行rsync https://gxnotes.com/article/175866.html
1334 * Bug fixes and man page updates.
1339 * Vote for GNU Parallel's community ads on
1340 http://meta.unix.stackexchange.com/a/4356/2972
1341 http://meta.askubuntu.com/a/16750/22307
1342 http://meta.serverfault.com/a/9040/45704
1344 * GNU Parallel was cited in: Hayabusa: Simple and Fast Full-Text
1345 Search Engine for Massive System Log Data
1346 http://dl.acm.org/citation.cfm?id=3095788
1348 * コマンドの並列化を行える『GNU parallel』の個人的使い方まとめ
1349 https://orebibou.com/2017/07/%E3%82%B3%E3%83%9E%E3%83%B3%E3%83%89%E3%81%AE%E4%B8%A6%E5%88%97%E5%8C%96%E3%82%92%E8%A1%8C%E3%81%88%E3%82%8B%E3%80%8Egnu-parallel%E3%80%8F%E3%81%AE%E5%80%8B%E4%BA%BA%E7%9A%84%E4%BD%BF%E3%81%84/
1351 * How to play and play with thousands of digitized 78rpm records
1352 https://blog.archive.org/2017/07/10/how-to-play-and-play-with-78rpm-record-transfers/
1354 * 并行一个for循环 https://gxnotes.com/article/130363.html
1356 * RFC 8142: GeoJSON Text Sequences
1357 https://sgillies.net/2017/05/18/rfc-8142-geojson-text-sequences.html
1359 * Git auto fetch script I run every day
1360 https://lukas.zapletalovi.com/2017/07/git-auto-fetch-script-i-run-every-day.html
1362 * cores, cpus and threads
1363 http://crazyhottommy.blogspot.de/2017/07/cores-cpus-and-threads.html
1365 * Bug fixes and man page updates.
1370 * The command line can now contain \257 (Macron) or UTF characters
1373 * Vote for GNU Parallel's community ads on
1374 http://meta.unix.stackexchange.com/a/4356/2972
1375 http://meta.askubuntu.com/a/16750/22307
1376 http://meta.serverfault.com/a/9040/45704
1378 * Graph for overhead for 1000 jobs has been updated. It remains
1379 steadily at 3.5 ms per job on a 1.7 GHz machine
1380 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1382 * GNU Parallel was cited in: The topology of the directed clique
1383 complex as a network invariant
1384 https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
1386 * GNU Parallel was cited in: Improving Optical Character Recognition
1387 of Finnish Historical Newspapers with a Combination of Fraktur &
1388 Antiqua Models and Image
1389 http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
1391 * GNU Parallel was cited in: Parallel Execution of Structural Mechanic
1392 Tasks with Use of Small Supercomputers
1393 http://www.sciencedirect.com/science/article/pii/S1877705817324815
1395 * GNU Parallel was cited in: Integration of a Multilingual Preordering
1396 Component into a Commercial SMT Platform
1397 https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
1399 * Tips For Running Jobs On Your VM
1400 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1402 * Speed up ML model development with GNU Parallel
1403 https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
1405 * Parallelizing a Python Function for the Extremely Lazy
1406 http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
1409 http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
1411 * Bug fixes and man page updates.
1416 * --timeout can now use s=second,m=minute,h=hour,d=day.
1418 * --dr is now an alias for --dry-run.
1420 * Vote for GNU Parallel's community ads on
1421 http://meta.unix.stackexchange.com/a/4356/2972
1422 http://meta.askubuntu.com/a/16750/22307
1423 http://meta.serverfault.com/a/9040/45704
1425 * GNU Parallel was cited in: Feature Detection in Visual Cortex during
1426 Different Functional States
1427 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
1429 * GNU Parallel was cited in: From genotype to phenotype: inferring
1430 relationships between microbial traits and genomic components
1431 https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
1433 * GNU Parallel was cited in: Designing fecal microbiota transplant
1434 trials that account for differences in donor stool efficacy
1435 http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
1437 * GNU Parallel was cited in: Assessing the predictability of
1438 anharmonic vibrational modes at the example of hydroxyl groups - ad
1439 hoc construction of localised modes and the influence of structural
1440 solute–solvent motifs
1441 http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
1443 * GNU Parallel was cited in: Mapping Environmental Influences on
1445 ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
1447 * GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
1448 Glass Transition in One Dimension
1449 https://arxiv.org/pdf/1704.02257.pdf
1451 * GNU Parallel was cited in: Online Automatic Post-editing for MT in a
1452 Multi-Domain Translation Environment
1453 https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
1455 * GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
1456 moderate-resolution reflective solar bands against MODIS Aqua over
1458 http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
1460 * GNU Parallel was cited in: Scattering Networks: Efficient 2D
1461 Implementation And Application To Melanoma Classification
1462 http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
1464 * GNU Parallel was cited in: Genome-scale detection of positive
1465 selection in 9 primates predicts human-virus evolutionary conflicts
1466 http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
1468 * GNU Parallel is used in: Creates a speech dataset for deep learning
1469 https://github.com/jupiter126/Create_Speech_Dataset
1471 * GNU Parallel is used in: Parse and process the demixing secrets
1472 dataset (DSD100) https://github.com/faroit/dsdtools
1474 * First glance at the gnu parallel utility
1475 https://ibiscybernetics.com/blog/2017-04-05.html
1477 * Installing parallel from source
1478 https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
1480 * How to run command or code in parallel in bash shell under Linux or
1482 https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
1484 * Parallel Serial Jobs Using GNU Parallel
1485 http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
1487 * GNU Parallel or How to list millions of S3 objects
1488 https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
1490 * Which Is the Best Tool for Copying a Large Directory Tree Locally?
1491 http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
1493 * Bug fixes and man page updates.
1498 * --halt supports done in addition to success and fail.
1500 * parset will set variables in parallel in Bash.
1502 * Perl 5.6 on Irix is no longer supported.
1504 * Vote for GNU Parallel's community ads on
1505 http://meta.unix.stackexchange.com/a/4356/2972
1506 http://meta.askubuntu.com/a/16750/22307
1507 http://meta.serverfault.com/a/9040/45704
1509 * GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
1510 from transcriptomic data using MapReduce
1511 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
1513 * GNU Parallel was cited in: StrAuto: automation and parallelization
1514 of STRUCTURE analysis
1515 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
1517 * GNU Parallel was cited in: Trespassing the Boundaries: Labeling
1518 Temporal Bounds for Object Interactions in Egocentric Video
1519 https://128.84.21.199/pdf/1703.09026.pdf
1521 * GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
1523 * Using GNU Parallel
1524 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1526 * Find and xargs and parallel
1527 http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
1529 * Quick Introduction to GNU Parallel
1530 https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1532 * Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
1534 * Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
1536 * Bug fixes and man page updates.
1541 * --rpl can now take arguments by adding '(regexp)' in the replacement
1544 * Vote for GNU Parallel's community ads on
1545 http://meta.unix.stackexchange.com/a/4356/2972
1546 http://meta.askubuntu.com/a/16750/22307
1547 http://meta.serverfault.com/a/9040/45704
1549 * GNU Parallel was cited in: shmlast: An improved implementation of
1550 Conditional Reciprocal Best Hits with LAST and Python
1551 https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
1553 * GNU Parallel was cited in: Prediction of relativistic electron flux
1554 in the Earth’s outer radiation belt at geostationary orbit by
1556 https://link.springer.com/article/10.1134/S0016793217010108
1558 * GNU Parallel was cited in: Higher likelihood of multiple bit-flips
1559 due to neutron-induced strikes on logic gates
1560 https://arxiv.org/pdf/1612.08239.pdf
1562 * GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
1563 Calculation of Hybrid Classical and Quantum Free Energies
1564 http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
1566 * GNU Parallel was cited in: Learning string distance with smoothing
1567 for OCR spelling correction
1568 https://link.springer.com/article/10.1007/s11042-016-4185-5
1570 * GNU Parallel was cited in: The Breakdown of String Perturbation
1571 Theory for Many External Particles
1572 https://arxiv.org/pdf/1611.08003.pdf
1574 * GNU Parallel was cited in: Operations Research Applications in
1576 https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
1578 * GNU Parallel was cited in: Parallel Computing: GNU Parallel
1579 http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
1581 * Stig Sandbeck Mathisen: Change All The Passwords (Again)
1582 http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
1584 * Trabalhando como Paralelismo no Bash usando o GNU Parallel
1585 http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
1587 * GNU parallel と SQL*Loader 組み合わせ実行例
1588 https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
1590 * Bug fixes and man page updates.
1595 * env_parallel now supports /bin/sh, ash, dash.
1597 * --tee will pipe all data to all jobs. Used with --pipe/--pipepart
1598 and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
1599 {} | wc -l' ::: {0..9}
1601 * If --results {replstr} ends in /: save in dir. Otherwise save as
1602 file. Example: parallel --results {} echo {} ::: a b c
1604 * Vote for GNU Parallel's community ads on
1605 http://meta.unix.stackexchange.com/a/4356/2972
1606 http://meta.askubuntu.com/a/16750/22307
1607 http://meta.serverfault.com/a/9040/45704
1609 * GNU Parallel was cited in: Low-delay forwarding with multiple
1610 candidates for VANETs using multi-criteria decision making
1611 http://ieeexplore.ieee.org/document/7835961/
1613 * GNU Parallel was cited in: An Integrated Simulator and Dataset that
1614 Combines Grasping and Vision for Deep Learning
1615 https://arxiv.org/pdf/1702.02103.pdf
1617 * GNU Parallel was cited in: A Bayesian model selection approach for
1618 identifying differentially expressed transcripts from RNA sequencing
1619 data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
1621 * GNU Parallel was cited in: The impact of copy number variation on
1622 gout, and the apple genome
1623 https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
1625 * GNU Parallel was cited in: Reaction rates for reaction-diffusion
1626 kinetics on unstructured meshes
1627 http://aip.scitation.org/doi/10.1063/1.4975167
1629 * GNU Parallel was cited in: Modeling prediction error improves power
1630 of transcriptome-wide association studies
1631 http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
1633 * GNU Parallel was cited in: Proper experimental design requires
1634 randomization/balancing of molecular ecology experiments
1635 http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
1637 * GNU Parallel was cited in: Experiment-based thermal micromagnetic
1638 simulations of the magnetization reversal for ns-range clocked
1640 http://aip.scitation.org/doi/full/10.1063/1.4974021
1642 * GNU Parallel was cited in: The University of Edinburgh’s systems
1643 submission to the MT task at IWSLT
1644 http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
1646 * Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
1648 * Job: DevOps Engineer/Senior Systems Administrator in New York, New
1650 http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
1652 * Training in GNU Parallel:
1653 https://www.carc.unm.edu/education-outreach/workshops--training/
1655 * Training in GNU Parallel:
1656 http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
1658 * Batch Convert Images from PNG to JPEG
1659 http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
1661 * Accelerating Oxford Nanopore Basecalling
1662 http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
1664 * parallel и imagemagick в loop на bash
1665 https://www.linux.org.ru/forum/development/13190247
1667 * Bug fixes and man page updates.
1677 * sql now uses a temporary credentials file for MySQL to avoid
1680 * --sqlmaster and --sqlworker have been reworked.
1682 * --sqlworker only reads from the DBURL: any command and any arguments
1685 * --sqlmaster +DBURL will append different commands to the DBURL and
1686 not erase the table.
1688 * If --results contain a replacement string, no tree structure with
1689 args will be generated.
1691 * --fg --tmux or --fg --tmuxpane will connect to the tmux.
1693 * GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
1694 Classification, and Measurement
1695 https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
1697 * GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
1698 Social and Solitary Wild Bees Detects Associations with Eukaryote
1699 Parasites and New Viruses
1700 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
1702 * GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
1703 of Metric Temporal Logic
1704 http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
1706 * 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
1708 * GNU Parallel as a queuing system:
1709 http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
1711 * AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
1713 http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
1714 and https://youtu.be/PlTuJx4VnGw?t=30m16s
1716 * Bug fixes and man page updates.
1721 * --results foo.csv will save output as a CSV-file. Can be directly
1722 imported into R or LibreCalc.
1724 * When using --pipepart a negative --block-size is not interpreted as
1725 a block size but as the number of blocks each jobslot should have.
1727 * --sqlmaster/--sqlandworker will append jobs to the DBURL if the
1728 DBURL is prepended with +.
1730 * GNU Parallel was cited in: A cloud-based workflow to quantify
1731 transcript-expression levels in public cancer compendia
1732 http://www.nature.com/articles/srep39259
1734 * GNU Parallel was cited in: Determination of crystal structures of
1735 proteins of unknown identity using a marathon molecular replacement
1736 procedure: Structure of Stenotrophomonas maltophilia
1737 phosphate-binding protein
1738 https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
1740 * GNU Parallel was cited in: Large-scale benchmarking reveals false
1741 discoveries and count transformation sensitivity in 16S rRNA gene
1742 amplicon data analysis methods used in microbiome studies
1743 http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
1745 * GNU Parallel was cited in: Decomposing Images into Layers via
1747 https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
1749 * Transient compute clustering with GNU Parallel and sshfs
1750 https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
1752 * 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
1753 http://www.tecmint.com/linux-image-conversion-tools/
1755 * All's Fair in Love and Distributed Storage
1756 http://cohesity.com/blog/alls-fair-love-distributed-storage/
1758 * How can I use GNU Parallel to run a lot of commands in parallel
1759 https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
1761 * 정해영의 블로그 - JEONG Haeyoung's blog
1762 http://blog.genoglobe.com/2016/11/gnu-parallel.html
1764 * 在Linux下将PNG和JPG批量互转的四种方法
1765 http://os.51cto.com/art/201612/524182.htm
1767 * Running in parallel http://tomkimpson.com/howto/gnuparallel/
1769 * Taco Bell Parallel Programming
1770 https://giorgos.sealabs.net/taco-bell-parallel-programming.html
1772 * Bug fixes and man page updates.
1777 * --record-env can now be used with env_parallel for bash, ksh, pdksh,
1780 * GNU Parallel was cited in: An improved implementation of Conditional
1781 Reciprocal Best Hits with LAST and Python
1782 https://pypi.python.org/pypi/shmlast/1.0.3
1784 * GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
1786 http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
1788 * GNU/Parallel – Run multiple commands simultaneously
1789 https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
1791 * Tutorial: Parallel web scraping with CasperJS and GNU Parallel
1792 http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
1794 * Bug fixes and man page updates.
1799 * First command no longer gets stdin as it causes unpredictable issues.
1801 * GNU Parallel was cited in: Efficiently parallelized modeling of
1802 tightly focused, large bandwidth laser pulses
1803 https://arxiv.org/pdf/1609.08146v1.pdf
1805 * How to crunch lots of geodata in parallel
1806 http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
1808 * GNU parallel is my new toaster
1809 http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
1811 * Bug fixes and man page updates.
1816 * parcat - cat files or fifos in parallel
1818 * GNU Parallel was cited in: Velocity: A Netflow Based Optimized
1820 https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
1822 * GNU Parallel was cited in: Viral deep sequencing needs an adaptive
1823 approach: IRMA, the iterative refinement meta-assembler
1824 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
1826 * Using GNU Parallel and ImageMagick for Conversions
1827 https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
1829 * Training in GNU Parallel
1830 http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
1832 * Chown Ceph OSD data directory using GNU Parallel
1833 http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
1835 * FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
1837 * dDocent: A guide to ddRAD sequencing
1838 https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
1840 * SOFTWARE GNU Parallel
1841 http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
1843 * Bug fixes and man page updates.
1848 * --tmuxpane opens jobs in panes in tmux. Useful if you want to
1849 monitor progress of less than 100 simultaneous jobs.
1851 * --linebuffer now treats \r as line ending, too.
1853 * Perl changes forces use of floats to be given with leading zero, so
1856 * --xapply renamed to --link.
1858 * Support for pdksh will fade until someone packages it for Ubuntu 16.
1860 * GNU Parallel was cited in: Exome sequencing of geographically
1861 diverse barley landraces and wild relatives gives insights into
1862 environmental adaptation
1863 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
1865 * GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
1866 Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
1868 * Easy parallelization with GNU parallel
1869 http://mpharrigan.com/2016/08/02/parallel.html
1871 * Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
1873 http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
1876 http://www.manitou-mail.org/blog/2016/07/parallel-import/
1878 * Large file batch processing using NodeJs and GNU Parallel
1879 http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
1881 * Bug fixes and man page updates.
1886 * env_parallel is now ready for wider testing. It is still beta
1889 * env_parallel is heavily modified for all shells and testing has been
1892 * Selectively choosing what to export using --env now works for
1893 env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
1895 * --round-robin now gives more work to a job that processes faster
1896 instead of same amount to all jobs.
1898 * --pipepart works on block devices on GNU/Linux.
1900 * GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
1901 Introns for Phylogenetics from High-Throughput Sequencing Reads
1902 Using Target Enrichment
1903 http://www.bioone.org/doi/full/10.3732/apps.1600016
1905 * GNU Parallel was cited in: StrAuto - Automation and Parallelization
1906 of STRUCTURE Analysis
1907 http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
1909 * GNU Parallel was cited in: Tools and techniques for computational
1911 http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
1913 * GNU Parallel was cited in: FlashPCA: fast sparse canonical
1914 correlation analysis of genomic data
1915 http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
1917 * GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
1918 Fine-tuning Query Expansion and Unification Strategies
1919 http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
1921 * GNU Parallel was cited in: The Evolution and Fate of
1922 Super-Chandrasekhar Mass White Dwarf Merger Remnants
1923 http://arxiv.org/pdf/1606.02300.pdf
1925 * GNU Parallel was cited in: Evaluation of Coastal Scatterometer
1927 https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
1929 * GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
1931 * The iconv slurp misfeature
1932 http://www.openfusion.net/linux/iconv_slurp_misfeature
1934 * แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
1936 * Bug fixes and man page updates.
1941 * $PATH can now be exported using --env PATH. Useful if GNU Parallel
1942 is not in your path on remote machines.
1944 * If --block is left out, --pipepart will use a block size that will
1945 result in 10 jobs per jobslot.
1947 * The cookie from 2016-01-04 was won by Morgan Rodgers on the
1948 2016-06-06 after 5 months.
1950 * Vote for GNU Parallel's community ad on
1951 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
1953 * GNU Parallel was cited in: Genotypic Resistance Tests Sequences
1954 Reveal the Role of Marginalized Populations in HIV-1 Transmission in
1955 Switzerland http://www.nature.com/articles/srep27580
1957 * GNU Parallel was cited in: A Deep-Learning Approach for Operation of
1958 an Automated Realtime Flare Forecast
1959 https://arxiv.org/pdf/1606.01587.pdf
1961 * Unix parallel: Populating all the USB sticks
1962 http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
1964 * GNU Parallel is a fantastic utility https://www.dray.be/parallel/
1966 * Combining a large number of VCF files
1967 https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
1969 * Useful Scraping Techniques
1970 http://blog.apps.npr.org/2016/06/17/scraping-tips.html
1972 * Tools of the trade
1973 http://onox.com.br/2015/05/tools-of-the-trade/#more-198
1975 * Armslist scraper https://github.com/nprapps/armslist-scraper/
1977 * Bug fixes and man page updates.
1982 * niceload --net pauses the program if the internet connection is
1985 * Vote for GNU Parallel's community ad on
1986 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
1988 * Updated speed comparison between versions
1989 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1991 * GNU Parallel was cited in: Improving computation efficiency by
1992 parallel programming
1993 http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
1995 * GNU Parallel was cited in: A supernova feedback implementation for
1996 the astrophysical simulation software Arepo
1997 https://arxiv.org/abs/1604.06071
1999 * GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
2000 resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
2002 * GNU Parallel was cited in: Host-pathogen co-evolution and the
2003 emergence of broadly neutralizing antibodies in chronic infections
2004 https://arxiv.org/abs/1512.06296
2006 * GNU Parallel was cited in: Pacific People, Metabolic Disease and
2007 Evolutionary Processes: a mitochondrial DNA study
2008 https://otago.ourarchive.ac.nz/handle/10523/6340
2010 * GNU Parallel was cited in: The effect of domain modeling on
2011 efficiency of planning: Lessons from the Nomystery domain
2012 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
2014 * GNU Parallel was cited in: Oops, my tests broke the build: An
2015 analysis of Travis CI builds with GitHub
2016 https://peerj.com/preprints/1984/
2018 * GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
2019 Distinct Set of Genomic Properties Over 40 Million Years of
2020 Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
2022 * GNU Parallel was cited in: An Empirical Comparison of Neural
2023 Architectures for Reinforcement Learning in Partially Observable
2025 http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
2027 * GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
2028 Management in Requester-wins Hardware Transactional Memory
2029 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
2031 * GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
2032 Mutation-Induced Stability Changes with Feature-Based Multiple
2034 http://www.sciencedirect.com/science/article/pii/S0022283616000310
2036 * GNU Parallel was cited in: A new orthology assessment method for
2037 phylogenomic data: Unrooted Phylogenetic Orthology
2038 http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
2039 https://github.com/ballesterus/UPhO
2041 * GNU Parallel was cited in: Distinctive Interest Point Selection for
2042 Efficient Near-duplicate Image Retrieval
2043 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
2045 * GNU Parallel was cited in: The Evolution of C Programming Practices:
2046 A Study of the Unix Operating System 1973–2015
2047 https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
2048 thumbnail graphs I have ever seen scattered all over the text)
2050 * GNU Parallel was cited in: Data processing pipeline for serial
2051 femtosecond crystallography at SACLA
2052 http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
2054 * GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
2055 Dynamics http://arxiv.org/pdf/1512.01460.pdf
2057 * GNU Parallel was cited in: Genomic legacy of the African cheetah,
2059 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
2061 * GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
2062 Characterization of IPv6 Network Security Policy
2063 http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
2065 * GNU Parallel was cited in: Comprehensive Annotation of the
2066 Parastagonospora nodorum Reference Genome Using Next-Generation
2067 Genomics, Transcriptomics and Proteogenomics
2068 http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
2070 * GNU Parallel was cited in: How attention influences perceptual
2071 decision making: Single-trial EEG correlates of drift-diffusion
2072 model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
2074 * GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
2075 Using High-Throughput Sequencing Reads
2076 http://repository.upenn.edu/edissertations/1460/
2078 * GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
2079 Processing with Associative Transducers
2080 http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
2082 * GNU Parallel was cited in: PVAIR: Partial Variable Assignment
2083 InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
2085 * GNU Parallel was cited in: Comparative Cladistics: Fossils,
2086 Morphological Data Partitions and Lost Branches in the Fossil Tree
2087 of Life http://opus.bath.ac.uk/43955/
2089 * GNU Parallel was cited in: Shannon: An Information-Optimal de
2090 NovoRNA-Seq Assembler
2091 http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
2093 * GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
2094 Estimation for Coastal Ocean Modeling
2095 https://repositories.lib.utexas.edu/handle/2152/32435
2097 * GNU Parallel was cited in: Computational Design of DNA-Binding
2099 http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
2101 * GNU Parallel was cited in: Reference genotype and exome data from an
2102 Australian Aboriginal population for health-based research
2103 http://www.nature.com/articles/sdata201623
2105 * GNU Parallel was cited in: Do aye-ayes echolocate?
2106 http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
2108 * GNU Parallel was cited in: Functional enrichments of disease
2109 variants across thousands of independent loci in eight diseases
2110 http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
2112 * GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
2113 microbial trait analyzer
2114 http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
2116 * GNU Parallel was mentioned in: Fast Playback Framework for Analysis
2117 of Ground-Based Doppler Radar Observations Using MapReduce
2119 http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
2121 * NCBI blast tutorial
2122 https://github.com/enormandeau/ncbi_blast_tutorial
2124 * Distributed Preservation Made Simple
2125 https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
2127 * Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
2129 * Bug fixes and man page updates.
2134 * :::+ and ::::+ work like ::: and :::: but links this input source to
2135 the previous input source in a --xapply fashion. Contrary to
2136 --xapply values do not wrap: The shortest input source determines
2139 * --line-buffer --keep-order now outputs continously from the oldest
2140 job still running. This is more what you would expect than the
2141 earlier behaviour where --keep-order had no effect with
2144 * env_parallel supports tcsh, csh, pdksh. In fish it now supports
2145 arrays. In csh/tcsh it now supports variables, aliases, and arrays
2146 with no special chars. In pdksh it supports aliases, functions,
2147 variables, and arrays.
2149 * Function exporting on Mac OS X works around old Bash version.
2151 * Better CPU detection on OpenIndiana.
2153 * GNU Parallel was cited in: Automatic Methods for Assisted
2155 https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
2157 * GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
2158 for Natural SUSY with a R-Sneutrino LSP
2159 http://arxiv.org/pdf/1603.06130.pdf
2161 * GNU Parallel was cited in: An Operational Radiometric Landsat
2162 Preprocessing Framework for Large-Area Time Series Applications
2163 https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
2165 * A basic demo of how GNU Parallel can speed up execution of commands
2166 https://www.youtube.com/watch?v=kl8LO2jcvMc
2168 * qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
2170 * FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
2172 * Parallel Processing with Catmandu
2173 https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
2176 http://staypython.blogspot.dk/2016/04/gnu-parallel.html
2178 * Bug fixes and man page updates.
2183 * env_parallel is a function that exports the environment (functions,
2184 aliases, variables, and arrays) to GNU Parallel. Run 'man
2185 env_parallel' for details.
2187 * niceload --prg now searches for substrings if no process with the
2190 * GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
2191 Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
2193 * GNU Parallel was mentioned (with wrong citation) in: Dual Level
2194 Parallel Computations for LargeScale High-Fidelity Database to
2195 Design Aerospace Vehicles
2196 http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
2198 * Using ‘Parallel’ in Unix
2199 https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
2201 * JPEG Squish uses (and co-distributes) GNU Parallel:
2202 http://dantidswell.co.uk/jpeg-squish/
2204 * Bug fixes and man page updates.
2209 * Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
2210 http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
2211 http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2212 http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
2214 * Daily Quick Tip: parallel
2215 https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
2217 * Downloading a list of URLs
2218 http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
2220 * Using GNU Parallel and ImageMagick for Conversions
2221 http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2223 * Running bash commands in parallel
2224 http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
2226 * parallel processing in PDAL
2227 https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
2229 * A Million Text Files And A Single Laptop
2230 http://randyzwitch.com/gnu-parallel-medium-data/
2232 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
2233 http://www.slideshare.net/koji_matsuda/gnu-parallel
2235 * Bug fixes and man page updates.
2240 * --sql DBURL uses DBURL as storage for jobs and output. It does not
2241 run any jobs so it requires at least one --sqlworker. DBURL must
2244 * --sqlworker DBURL gets jobs from DBURL and stores the result back to
2247 * --sqlandworker is a shorthand for --sql and --sqlworker.
2249 * --sqlworker requires the output of a single job to fit in memory.
2251 * --results now also saves a file called 'seq' containing the sequence
2254 * If $PARALLEL_ENV is a file, then that file will be read into
2257 * man parallel_tutorial has been given an overhaul.
2259 * --workdir now accepts replacementstrings.
2261 * GNU Parallel was cited in: Possum - A Framework for
2262 Three-Dimensional Reconstruction of Brain Images from Serial
2263 Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
2265 * GNU Parallel was cited in: A Genetic Algorithm for the selection of
2266 structural MRI features for classification of Mild Cognitive
2267 Impairment and Alzheimer's Disease
2268 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
2270 * GNU Parallel was cited in: The Effect of Domain Modeling on
2271 Performance of Planning Algorithms
2272 http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
2274 * Plotting time tables for jobs run by GNU Parallel
2275 https://github.com/ziotom78/plot_joblog
2277 * GNU Parallel was used in: Mission Impossible: you have 1 minute to
2278 analyze the Ebola Genome https://www.biostars.org/p/119397
2280 * GNU Parallel is used in LAST: http://last.cbrc.jp/
2282 * Distributed Log Search Using GNU Parallel
2283 http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
2285 * Bug fixes and man page updates.
2290 * --transfer is now an alias for --transferfile {}.
2292 * --transferfile works like --transfer, but takes an argument like
2293 --return. This makes it possible to combine transferring files
2294 with multiple input sources: parallel -S server --tf {1} wc {2}
2295 {1} ::: * ::: -l -w -c
2297 * total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
2298 $_=total_jobs() =}' ::: {1..50}
2300 * GNU Parallel was cited in: Evolution and Learning in Heterogeneous
2302 http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
2304 * GNU Parallel was cited in: Achieving Consistent Doppler Measurements
2305 from SDO/HMI Vector Field Inversions
2306 http://arxiv.org/pdf/1511.06500.pdf
2308 * Flo uses GNU Parallel: https://github.com/wurmlab/flo
2310 * 使用 GNU parallel 來平行運算
2311 http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
2313 * Bug fixes and man page updates.
2318 * GNU Parallel packaged for CERN CentOS:
2319 http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
2321 * GNU Parallel was cited in: The Outer Solar System Origins Survey:
2322 I. Design and First-Quarter Discoveries
2323 http://arxiv.org/pdf/1511.02895.pdf
2325 * GNU Parallel was cited in: Contrasting genetic architectures of
2326 schizophrenia and other complex diseases using fast
2327 variance-components analysis
2328 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
2330 * GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
2331 using Support Vector Machines
2332 http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
2334 * GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
2335 Using Brownian Dynamics, Molecular Dynamics and Milestoning
2336 http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
2338 * GNU Parallel was cited in: A Detailed Characterization of Errors in
2339 Logic Circuits due to Single-Event Transients
2340 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
2342 * GNU Parallel was cited in: Arabic Speaker Emotion Classification
2343 Using Rhythm Metrics and Neural Networks
2344 http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
2346 * GNU Parallel was cited in: Stride Search: a general algorithm for
2347 storm detection in high resolution climate data
2348 http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
2350 * GNU Parallel was cited in: Decomposing Digital Paintings into Layers
2351 via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
2353 * GNU Parallel was cited in: Structure and evolutionary history of a
2354 large family of NLR proteins in the zebrafish
2355 http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
2357 * GNU Parallel was cited in: Evolution of movement strategies under
2358 competitive interactions
2359 http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
2361 * Automating large numbers of tasks
2362 https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
2364 * Max out your IOPs with GNU Parallel
2365 http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
2367 * Bug fixes and man page updates.
2372 * --plus makes it possible to use {##} as a shorthand for
2373 {= $_=$Global::JobQueue->total_jobs() =} which gives the the number
2374 of jobs to run in total.
2376 * {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
2379 * GNU Parallel is now mostly compatible with lsh
2380 (http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
2381 autossh (http://www.harding.motd.ca/autossh/).
2383 * --workdir ... now also works when run locally.
2385 * GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
2386 regular graph http://arxiv.org/pdf/1509.05933.pdf
2388 * GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
2390 http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html
2392 * GNU Parallel is used in TraitAR:
2393 https://testpypi.python.org/pypi/traitar/0.1.4
2395 * A parallel and fast way to download multiple files
2396 http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html
2398 * Usar GNU Parallel para aumentar el rendimiento de tus scripts
2399 http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/
2401 * Bug fixes and man page updates.
2406 * GNU Parallel was cited in: Flexible Modeling of Epidemics with an
2407 Empirical Bayes Framework
2408 http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382
2410 * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
2411 https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf
2413 * GNU Parallel was cited in: A Scalable Parallel Implementation of
2414 Evolutionary Algorithms for Multi-Objective Optimization on GPUs
2415 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074
2417 * GNU Parallel was cited in: How Can We Measure the Similarity Between
2418 Résumés of Selected Candidates for a Job?
2419 https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job
2421 * GNU Parallel was cited in: Interplay of cell dynamics and epithelial
2422 tension during morphogenesis of the Drosophila pupal wing
2423 http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf
2425 * Third-party selling GNU Parallel T-shirts
2426 http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html
2428 * Joys of gnu parallel
2429 http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/
2431 * Crop and resize images with bash and ImageMagick
2432 https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/
2434 * Three Ways to Script Processes in Parallel
2435 http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/
2437 * What It Looks Like to Process 3.5 Million Books
2438 http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/
2440 * Bug fixes and man page updates.
2445 * If $job->skip() is called in {= =} the job will not be run.
2447 * @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
2448 $_="j" =}' ::: 1 2 3 ::: 4 5 6
2450 * Version of GNU Parallel that uses PostgreSQL as backend
2451 https://github.com/stephen-fralich/parallel-sql/
2453 * SpeedSeq: ultra-fast personal genome analysis and interpretation
2454 http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html
2456 * GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep
2458 * Who actually reads the code?
2459 http://www.fsf.org/blogs/community/who-actually-reads-the-code
2461 * Introduction to GNU Parallel
2462 http://erictleung.com/2015/08/06/intro-to-gnu-parallel/
2464 * ¿Alguien se lee el código?
2465 http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html
2467 * ¿Quién se lee el código fuente?
2468 https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/
2470 * Distribution des traitements avec GNU Parallel
2471 http://blog.inovia-conseil.fr/?p=226#4
2473 * Эксперимент по проверке, читают ли код открытых проектов
2474 http://www.opennet.ru/opennews/art.shtml?num=42718
2476 * 多核心主機搭配 GNU parallel
2477 http://blog.zeroplex.tw/2015/08/gnu-parallel.html
2479 * Bug fixes and man page updates.
2484 * If a record fits in a block, --block only reads upto the size of
2485 --block. If not: --block reads a full --block more.
2487 * Due to widely spread distributions still using --tollef even after a
2488 year of being retired following a year of being obsolete, --tollef
2489 now gives an error unless used with --gnu.
2491 * --nice now uses a perl wrapper instead of the nice command.
2493 * Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
2496 * A parser for GNU Parallel --joblog files:
2497 https://github.com/harryjubb/joblog
2499 * GNU Parallel was cited in: Dynamical formation & scattering of
2500 hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
2501 collisions http://arxiv.org/pdf/1507.03593.pdf
2503 * GNU Parallel was cited in: A Fast Compiler for NetKAT
2504 http://arxiv.org/pdf/1506.06378.pdf
2506 * GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
2508 http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
2510 * GNU Parallel was used in: Somatic mutation calling from the matched
2511 tumor-normal exome-sequencing
2512 http://fafner.meb.ki.se/biostatwiki/somac/
2514 * Parallel Processing from the Command Line
2515 https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
2517 * Using GNU Parallel to speed up network operations
2518 http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
2520 * Crawl faster with "parallel" - but how fast?
2521 http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
2523 * Simultaneously benchmark many URLs with ApacheBench and GNU parallel
2524 https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
2526 * Bug fixes and man page updates.
2531 * --halt has been rewritten completely. You can now combine
2532 percentages with success or fail. See the man page.
2534 * Exit values 102..254 have been removed. 101 means more than 100 jobs
2537 * Killing through --timeout, --memfree, or --halt is now done as a
2540 * --termseq determines which signals are sent when a job is killed.
2542 * An empty argument would previously cause no string to be
2543 inserted. This is now changed to '' being inserted, thus prepending
2544 a space to the output of: parallel echo {} b ::: ''
2546 * $PARALLEL_ENV can now be set to an environment prepending the
2547 command. Used in env_parallel as mentioned in the manpage.
2549 * --retry-failed will retry all failed jobs in a joblog. It will
2550 ignore any command given.
2552 * --ssh and $PARALLEL_SSH can be used to set the command used for
2553 ssh. The command is assumed to behave the same way as ssh.
2555 * --fifo now works in csh, too.
2557 * Q(...) can be used in {= =} to shell quote a string.
2559 * GNU Parallel was cited in: DockBench: An Integrated Informatic
2560 Platform Bridging the Gap between the Robust Validation of Docking
2561 Protocols and Virtual Screening Simulations
2562 http://www.mdpi.com/1420-3049/20/6/9977
2564 * GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
2566 http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
2568 * GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
2569 scattering and resonance calculations
2570 http://arxiv.org/pdf/1505.07691.pdf
2572 * GNU Parallel was cited in: A quantitative assessment of the Hadoop
2573 framework for analyzing massively parallel DNA sequencing data
2574 http://link.springer.com/article/10.1186/s13742-015-0058-5
2576 * GNU Parallel was cited in: A composite genome approach to identify
2577 phylogenetically informative data from next-generation sequencing
2578 http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
2580 * GNU Parallel is used in: taxator-tk
2581 http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
2583 * GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
2585 * GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
2587 * GNU Parallel is used in: A Fingerprint Identification System
2588 https://curve.carleton.ca/system/files/theses/28733.pdf
2590 * Job ad asking for GNU Parallel experience:
2591 http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
2593 * Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
2595 * Bug fixes and man page updates.
2600 * Security: The security issue for --sshlogin + --fifo/--cat has been
2601 fixed. Thereby all issues with
2602 http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
2605 * Security: After further security analysis the issue fixed in
2606 20150422 also fixed the problem for --tmux.
2608 * GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
2609 coordinated transcriptional regulation in gene expression
2611 http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
2613 * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
2614 Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
2615 Metagenomics and RNA-seq
2616 http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
2618 * GNU Parallel was cited in: Sequencing the cap-snatching repertoire
2619 of H1N1 influenza provides insight into the mechanism of viral
2620 transcription initiation
2621 http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
2623 * GNU Parallel was cited in: Genome assembly using Nanopore-guided
2624 long and error-free DNA reads
2625 http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
2627 * GNU Parallel was used (unfortunately with wrong citation) in:
2628 Comparing the CarbonTracker and TM5-4DVar data assimilation systems
2629 for CO2 surface flux inversions
2630 http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
2632 * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
2633 https://bitbucket.org/srp33/gsoa
2635 * A Quick and Neat :) Orchestrator using GNU Parallel
2636 http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
2638 * Execute commands on multiple computers using GNU Parallel (setting
2639 up a cluster on the cheap)
2640 https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
2642 * Functions and GNU parallel for effective cluster load management
2643 http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
2645 * Use parallel processing to save time importing databases
2646 http://drupalsun.com/node/41854
2648 * Run multiple ssh commands in parallel with GNU Parallel
2649 http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
2651 * Importing huge databases faster
2652 https://www.lullabot.com/blog/article/importing-huge-databases-faster
2654 * Parallel? Gnu parallel! https://debian.pro/1834
2656 * Bug fixes and man page updates.
2661 New in this release:
2663 * Security fix. An attacker on the local system could make you
2664 overwrite one of your own files with a single byte. The problem
2665 exist when you use --compress or --tmux or --pipe or --cat or
2666 --fifo. The attacker must figure out the randomly chosen file name
2667 and create a symlink within a time window of 15 ms.
2669 * --shuf will generate all jobs, and shuffle them before running
2670 them. This is useful to get a quick preview of the results before
2671 running the full batch.
2673 * GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
2675 * GNU Parallel was cited in: Scaling Machine Learning for Target
2676 Prediction in Drug Discovery using Apache Spark
2677 https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
2679 * GNU Parallel was cited in: Bayesian inference of protein structure
2680 from chemical shift data https://peerj.com/articles/861/
2682 * GNU Parallel was cited in: Toward Enhanced Metadata Quality of
2683 Large-Scale Digital Libraries: Estimating Volume Time Range
2684 https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
2686 * GNU Parallel was cited in: Experimental study on the Wind Farm
2687 Substation Cable Installation Problem
2688 http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
2690 * GNU Parallel was used in: https://github.com/KAPPS-/landsat-gifworks
2692 * GNU Parallel was used in: https://github.com/exascience/elprep
2694 * GNU Parallel was used in:
2695 http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
2697 * GNU Parallel was used in:
2698 http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
2700 * GNU Parallel was used in: Rapid haploid SNP calling
2701 https://github.com/tseemann/snippy
2703 * Pictures and Metadata
2704 http://www.ozzy.no/2015/02/05/pictures-and-metadata/
2706 * Task automation with bash and parallel
2707 https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
2709 * How To: Speed Up File Transfers in Linux using RSync with GNU
2711 http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
2713 * Mirroring a Git Repository
2714 https://avacariu.me/articles/mirroring-a-git-repository.html
2716 * Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
2717 https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
2720 http://www.zhihu.com/question/29257300
2722 * Bug fixes and man page updates.
2727 New in this release:
2729 * --number-of-cores respects 'taskset' on GNU/Linux.
2731 * --joblog --pipe gives the data send and received in the log.
2733 * GNU Parallel was tested to support 100 GB sized records in --pipe. A
2734 few bugs was fixed to support >2 GB records. It works, but is rather
2737 * GNU Parallel was cited in: RIG: Recalibration and Interrelation of
2738 genomic sequence data with the GATK
2739 http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
2741 * GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
2742 Improving metagenomic analysis with high performance classification
2743 and wide taxonomic attachment
2744 http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
2746 * GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
2747 shaped by declining effective population size
2748 http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
2750 * GNU Parallel was cited in: Evidence for DCO+ as a probe of
2751 ionization in the warm disk surface
2752 http://arxiv.org/pdf/1503.02659.pdf
2754 * GNU Parallel was cited in: De novo assembly and annotation of the
2755 Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
2756 from raw genomic reads and comparative analysis with the yellow
2757 fever mosquito (Aedes aegypti)
2758 http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
2760 * GNU Parallel was cited in: A General Approach to Network
2761 Configuration Analysis
2762 http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
2764 * GNU Parallel was cited in: Scrimer: designing primers from
2766 http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
2768 * GNU Parallel was cited in: Efficient Retrieval of Key Material for
2769 Inspecting Potentially Malicious Traffic in the Cloud
2770 http://sacko.uk/pdf/2015.1.pdf
2772 * GNU Parallel will be presented at Strataconf: Poor Man's Parallel
2774 http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
2776 * GNU Parallel was used in:
2777 https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
2779 * GNU Parallel was used in: https://github.com/martymac/fpart
2781 * GNU Parallel was used in:
2782 https://github.com/hoytak/diabetic-retinopathy-code
2784 * GNU Parallel was used in:
2785 https://github.com/mehmattski/HybSeqPipeline
2787 * GNU Parallel was used in:
2788 http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
2790 * Using GNU Parallel on a Raspberry Pi cluster:
2791 http://www.dcglug.org.uk/cluster-progress/
2793 * An introduction to vector tiling and map reduce in postgis:
2794 http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
2796 * Running scripts in parallel with GNU Parallel:
2797 http://code.jasonbhill.com/2015/03/
2799 * Mahout: Parallelising the creation of DecisionTrees:
2800 http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
2802 * High-Performance Scientific Computing: Running serial jobs in
2804 https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
2806 * Parallel cardinality on your laptop
2807 https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
2809 * Experiments about a better locate using grep
2810 http://a3nm.net/blog/better_locate.html
2812 * Homework with GNU Parallel:
2813 https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
2815 * Parallel - Jobs in Skripten parallelisieren:
2816 https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
2818 * GNU Parallel, czyli 100% użycia procesora
2819 http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
2821 * Bug fixes and man page updates.
2826 * --tmux has gotten a major overhaul.
2828 * GNU Parallel was cited in: RaftLib: A C++ Template Library for High
2829 Performance Stream Parallel Processing
2830 http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
2832 * GNU Parallel was cited in: Quantifying properties of hot and dense
2833 QCD matter through systematic model-to-data comparison
2834 http://arxiv.org/pdf/1502.00339.pdf
2836 * GNU Parallel was cited in: Towards Collaborative Exploration and
2837 Analysis of Big Data from Mars: A Noachis Terra Case Study
2838 http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
2840 * GNU Parallel was used (unfortunately with wrong citation) in:
2841 Performance and Scaling Comparison Study of RDBMS and NoSQL
2843 http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
2845 * GNU Parallel was used (unfortunately without citation) in: Parallel
2846 Implementation of Big Data Pre-Processing Algorithms for Sentiment
2847 Analysis of Social Networking Data
2848 http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
2850 * GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
2851 Ultra-fast personal genome analysis and interpretation
2852 http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
2854 * Zip Folders with GNU Parallel
2855 http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
2857 * Using GNU Parallel with Freesurfer
2858 http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
2860 * GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
2862 * Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
2864 * Bug fixes and man page updates.
2869 * Remote jobs now send stderr (standard error) to stderr (standard
2870 error) instead of stdout (standard output).
2872 * Remote execution command is now packed using base64 encoded
2873 bzip2. This means that big environments (app. 100 KB) can be
2874 transferred. This change makes remote execution alpha quality.
2876 * --semaphoretimeout now takes a negative value. This means give up if
2877 the semaphore is not gotten within the timeout.
2879 * --halt -1 and -2 now means halt if a job succeeds (so the opposite
2882 * --no-keep-order will reverse --keep-order.
2884 * Bash's second fix of shellshock caused --env to break again when
2885 exporting functions. This has been fixed again.
2887 * A semibig refactoring of big functions. All non-trivial functions
2888 are now less than 100 lines. The refactoring makes this release beta
2891 * A description of the design decisions for GNU Parallel can be found
2892 in 'man parallel_design'.
2894 * A bug fix in replacement strings caused rewrite of the replacement
2895 function. This makes use of replacement strings alpha quality.
2897 * GNU Parallel was cited in: Improving Energy and Performance with
2898 Spintronics Caches in Multicore Systems
2899 http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
2901 * GNU Parallel was cited in: Parallel post-processing with MPI-Bash
2902 http://dl.acm.org/citation.cfm?id=2691137
2904 * GNU Parallel was cited in: Distinguishing cause from effect using
2905 observational data: methods and benchmarks
2906 http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
2908 * GNU Parallel was cited in: Data Science at the Command Line
2909 http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
2911 * GNU Parallel was cited in: Resolution of Genetic Map Expansion
2912 Caused by Excess Heterozygosity in Plant Recombinant Inbred
2913 Populations http://www.g3journal.org/content/4/10/1963.full.pdf
2915 * GNU Parallel was cited in: Bayesian Inference of Protein Structure
2916 from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
2918 * GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
2919 in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
2921 * GNU Parallel was cited in: Computação Verde na Camada de Aplicação
2922 https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
2924 * GNU Parallel was cited in: Frameshift alignment: statistics and
2925 post-genomic applications
2926 http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
2928 * GNU Parallel was cited in: Towards Recommender Engineering Tools and
2929 Experiments for Identifying Recommender Differences
2930 http://elehack.net/research/thesis/mde-thesis.pdf
2932 * GNU Parallel was cited in: Speaker Environment Classification Using
2933 Rhythm Metrics in Levantine Arabic Dialect
2934 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
2936 * GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
2937 http://arxiv.org/pdf/1501.02155.pdf
2939 * GNU Parallel was cited in: Allocation Policy Analysis for Cache
2940 Coherence Protocols for STT-MRAM-based caches
2941 http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
2943 * GNU Parallel was cited in: Using Trusted Platform Module for
2944 securing virtual environment access in Cloud
2945 http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
2947 * GNU Parallel was cited in: Weakly Supervised Learning for
2948 Compositional Sentiment Recognition
2949 http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
2951 * GNU Parallel was cited in: Agility and Performance in Elastic
2952 Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
2954 * GNU Parallel was used (unfortunately without citation) in: Large
2955 Scale Author Name Disambiguation in Digital Libraries
2956 http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
2958 * GNU Parallel is used in BEDOPS:
2959 https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
2961 * Job ad asking for GNU Parallel skills:
2962 http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
2964 * GNU Parallel: Open Source For You (OSFY) magazine, October 2013
2966 http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
2968 * Multithreaded Encryption and Compression
2969 http://www.krazyworks.com/multithreaded-encryption-and-compression/
2971 * GNU Parallel on OSX and Linux
2972 https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
2974 * How to build gnu parallel from source on Ubuntu PC?
2975 http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
2977 * GNU parallel for openaddr-process-one
2978 https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
2980 * From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
2982 * Software Development Tooling
2983 http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
2985 * コマンドを並列に実行するGNU parallelがとても便利
2986 http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
2988 * Bug fixes and man page updates.
2993 * Remote systems can be divided into hostgroups (e.g. web and db) by
2994 prepending '@groupname/' to the sshlogin. Multiple groups can be
2995 given by separating groups with '+'. E.g. @web/www1 @web+db/www2
2998 * Remote execution can be restricted to servers that are part of one
2999 or more groups by '@groupname' as an sshlogin. Multiple groups can
3000 be given by separating groups with '+'. E.g. -S @web or -S @db+web
3002 * With --hostgroup you can restrict arguments to certain hostgroups by
3003 appending '@groupname' to the argument. Multiple groups can be
3004 given by separating groups with '+'. E.g. my_web_arg@web
3005 db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
3006 developing a prototype for this.
3008 * GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
3009 Massively Parallel Sequencing Data Analysis using Hadoop
3010 http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
3012 * GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
3013 the Histological Quantification of Whole Slide Images
3014 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
3016 * GNU Parallel was cited in: Exploring a multiprocessor design space
3017 to analyze the impact of using STT-RAM in the memory hierarchy
3018 http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
3020 * Command-Line OCR with Tesseract on Mac OS X
3021 https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
3023 * Bug fixes and man page updates.
3028 * --env was changed to deal with Bash's new way of exporting a function.
3030 * GNU Parallel was cited in: Exclusion of cosmic rays in
3031 protoplanetary disks. II. Chemical gradients and observational
3032 signatures http://iopscience.iop.org/0004-637X/794/2/123/article
3034 * GNU Parallel was cited in: Application of Machine Learning to
3035 Algorithm Selection for TSP
3036 http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
3038 * GNU Parallel was cited in: Performance Models for LTE-Advanced
3040 http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
3042 * GNU Parallel was used (unfortunately without citation) in: De Novo
3043 Insertions and Deletions of Predominantly Paternal Origin Are
3044 Associated with Autism Spectrum Disorder
3045 http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
3047 * GNU Parallel was determined 'popular' by Statistical Analysis of
3048 Popular Open Source Software Projects and Their Communities
3049 http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
3051 * GNU Parallel is demonstrated in: Data Science at the Command Line:
3052 Facing the Future with Time-Tested Tools
3054 * GNU Parallel was covered in a talk at Sydney Perl Mongers group
3055 http://www.openfusion.net/talks/pwp/#24
3057 * GNU Parallel and how to get started with it
3058 http://www.jduck.net/blog/2014/09/30/gnu-paralell/
3060 * Behat/Selenium/Parallel
3061 http://jaffamonkey.com/behat-selenium-parallel/
3063 * Comparing Golang, Scala, Elixir and Ruby for ETL
3064 http://www.dimroc.com/2014/09/29/etl-language-showdown/
3066 * Assemble a list of which of these hosts are up or down
3067 http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
3069 * Running commands on many nodes simultaneously
3070 http://opsfun.wordpress.com/2014/03/31/19/
3072 * Ubuntu 13.04でGNU ParallelをGNUモードで動かす
3073 http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
3075 * Bug fixes and man page updates.
3080 * If the file given as --sshloginfile is changed it will be re-read
3081 when a job finishes though at most once per second. This makes it
3082 possible to add and remove hosts while running.
3084 * Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
3086 * OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
3088 * GNU Parallel was presented at Balti and Bioinformatics "On-Air"
3089 http://youtu.be/UtXlr19xTh8?t=2h5m0s
3091 * Pleiades Plus uses GNU Parallel
3092 https://github.com/ryanfb/pleiades-plus
3094 * Imagemagick and GNU Parallel
3095 http://deepdish.io/2014/09/15/gnu-parallel/
3097 * GNU Parallel (Sebuah Uji Coba)
3098 http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
3100 * GNU Parallel: 并行执行Linux命令
3101 http://blog.csdn.net/xzz_hust/article/details/39183837
3106 * GNU Parallel now uses the same shell it was started from as the
3107 command shell for local jobs. So if GNU Parallel is started from
3108 tcsh it will use tcsh as its shell even if the login $SHELL is
3109 different. For remote jobs the login $SHELL will be used.
3111 * The whole current environment in bash can be copied by using a shell
3112 wrapper function (Search manual for env_parallel).
3114 * --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
3115 {...} {/..} {/...}. The idea being that '+foo' matches the opposite
3116 of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
3117 = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
3119 * GNU Parallel now deals correctly with the combination
3120 rsync-3.1.X-client and rsync-2.5.7-server
3122 * GNU Parallel was cited in: A Web Service for Scholarly Big Data
3123 Information Extraction
3124 http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
3126 * Comparison of the speed of different GNU Parallel versions:
3127 http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
3129 * GNU Parallel was covered in the webcast 2014-08-20: Data Science at
3130 the Command Line http://www.oreilly.com/pub/e/3115
3132 * Distributed processing with GNU parallel
3133 http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
3135 * A Peek into GNU Parallel
3136 http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
3138 * Сборка GNU parallel для CentOS/RHEL
3139 http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
3141 * Bug fixes and man page updates.
3146 * {= perl expression =} can be used as replacement string. The
3147 expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
3148 the string. This makes replacement strings extremely flexible.
3150 * Positional perl expressions (similar to {2}) are given as {=2 perl
3151 expression=} where 2 is the position.
3153 * One small backwards incompatibility: {1}_{2} will replace {2} with
3154 the empty string if there is only one argument. Previously {2} would
3155 have been left untouched.
3157 * Replacement strings can be defined using --rpl. E.g. parallel --rpl
3158 '{.gz} s/\.gz$//' echo {.gz} ::: *.gz
3160 * The parenthesis around {= perl expression =} can be changed with
3163 * --tmux will direct the output to a tmux session instead of
3164 files. Each running jobs will be in its own window.
3166 * --halt 10% will stop spawning new jobs if 10% failed so far.
3168 * GNU Parallel was cited in: bammds: A tool for assessing the ancestry
3169 of low depth whole genome data using multidimensional scaling (MDS)
3170 http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
3172 * GNU Parallel was cited in: Molecular ferroelectric contributions to
3173 anomalous hysteresis in hybrid perovskite solar cells
3174 http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
3176 * GNU Parallel was cited in: Energy Sorghum-a genetic model for the
3177 design of C4 grass bioenergy crops
3178 http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
3180 * GNU Parallel was cited in: Web-scale Content Reuse Detection
3181 www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
3183 * Tell your friends to sign up for the Webcast at 2014-08-20 covering
3184 GNU Parallel: Data Science at the Command Line
3185 http://www.oreilly.com/pub/e/3115
3187 * GNU Parallel all the things!
3188 http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
3190 * Shell command composition and dispatch
3191 http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
3193 * Parallelising plink (or anything else) the easy way
3194 http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
3196 * Easy and cheap cluster building on AWS
3197 https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
3199 * Paralelizace běžných činností v konzoli pomocí GNU Parallel
3200 http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
3202 * [原] Ubuntu 下使用 parallel 命令的注意事项
3203 http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
3205 * 简单的并行, 可使用GNU parallel
3206 http://jerkwin.github.io/2014/06/10/GNU-parallel/
3208 * Bug fixes and man page updates.
3213 * --shebang and --shebang-wrap now works on FreeBSD.
3215 * --pipepart works with --header, --regexp, --cat and --fifo.
3217 * ./configure --disable-documentation will not build documentation.
3219 * {%} works as job slot.
3221 * GNU Parallel was cited in: Energy Efficient, High-speed
3222 Communication in WSNs
3223 https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
3225 * GNU Parallel was cited in: Ferroelectric contributions to anomalous
3226 hysteresis in hybrid perovskite solar cells
3227 http://arxiv.org/pdf/1405.5810.pdf
3229 * Processes Paralleling to Speed up Computing and Tasks Execution in
3231 http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
3233 * Moving / Copying lots of s3 files quickly using gnu parallel
3234 http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
3236 * Speeding up grep log queries with GNU Parallel
3237 http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
3239 * Ubuntu - Gnu parallel - It's awesome
3240 http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
3242 * Export quicklooks with vector overlay using TuiView
3243 http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
3245 * GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
3247 * GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
3249 * Bug fixes and man page updates.
3254 * Use --semaphoretimeout to ignore the semaphore lock after a while.
3256 * {%} introduced as job slot replacement string. It has known bugs.
3258 * --slotreplace changes slot replacement string.
3260 * GNU Parallel officially in Solaris 11.2beta
3261 https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
3263 * GNU Parallel was cited in: A Comparison of Antenna Placement
3264 Algorithms http://abhinavjauhri.com/publications/eap.pdf
3266 * Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
3267 https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
3269 * BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
3271 * Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
3273 * Convert FLAC to MP3 with GNU parallel
3274 http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
3276 * JD Edwards Business Function Documentation
3277 http://www.azertech.net/content/jd-edwards-business-function-documentation
3279 * Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
3281 * How I start a bioinformatics project
3282 http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
3284 * No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
3286 * Bug fixes and man page updates.
3291 * --pipepart is a highly efficient alternative to --pipe if the input
3292 is a real file and not a pipe.
3294 * If using --cat or --fifo with --pipe the {} in the command will be
3295 replaced with the name of a physical file and a fifo respectively
3296 containing the block from --pipe. Useful for commands that cannot
3297 read from standard input (stdin).
3299 * --controlmaster has gotten an overhaul and is no longer
3302 * --env is now copied when determining CPUs on remote system. Useful
3303 for copying $PATH if parallel is not in the normal path.
3305 * --results now chops the argument if the argument is longer than the
3306 allowed path length.
3308 * Build now survives if pod2* are not installed.
3310 * The git repository now contains tags of releases.
3312 * GNU Parallel was cited in: Proactive System for Digital Forensic
3314 http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
3316 * GNU Parallel was cited in: Beyond MAP estimation with the
3317 track-oriented multiple hypothesis tracker
3318 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
3320 * GNU Parallel was cited in: Prokka: rapid prokaryotic genome
3322 http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
3324 * GNU Parallel was used (unfortunately with improper citation) in:
3325 Perspectives in magnetic resonance: NMR in the post-FFT era
3326 http://www.sciencedirect.com/science/article/pii/S1090780713003054
3328 * GNU Parallel is used in https://github.com/cc2qe/speedseq
3330 * Batch XML validation at the command line.
3331 http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
3333 * freebayes-parallel uses GNU Parallel
3334 https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
3336 * Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
3338 * Speeding Up Grep Log Queries with GNU Parallel
3339 http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
3341 * How to run tbss_2_reg in parallel
3342 http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
3344 * GNU parallel example: blastn https://asciinema.org/a/8775
3346 * Iterative DNS Brute Forcing
3347 http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
3349 * Ejecutando comandos en paralelo
3350 http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
3352 * Ejecutando en paralelo en bash (ejemplo con rsync)
3353 http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
3355 * Bug fixes and man page updates.
3360 * Offical package for Alpine Linux now exists:
3361 http://alpinelinux.org/apk/main/x86/parallel
3363 * GNU Parallel was cited in: Estimating uncertainties in statistics
3364 computed from direct numerical simulation
3365 http://dx.doi.org/10.1063/1.4866813
3367 * GNU Parallel was cited in: Vehicle routing problems with time
3368 windows and multiple service workers: a systematic comparison
3369 between ACO and GRASP
3370 http://link.springer.com/article/10.1007/s10100-014-0341-z
3372 * GNU Parallel, quick and easy
3373 http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
3375 * Using Multiple CPU Cores With Command Line Tools
3376 http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
3378 * Batch convert mp3 CBR to VBR
3379 http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
3381 * Running Behat in parallel with Selenium grid
3382 http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
3384 * Git-Mirror per cronjob aktuell halten
3385 https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
3387 * Пишем многопоточный скрипт на bash
3388 http://dafter.ru/duf/howto/130.html
3390 * 如何利用多核CPU来加速你的Linux命令
3391 http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
3393 * Bug fixes and man page updates.
3398 * --tollef has been retired.
3400 * --compress has be redesigned due to bugs.
3402 * Format of --eta and --joblog has changed slightly.
3404 * GNU Parallel was cited in: Speaker Verification and Keyword Spotting
3405 Systems for Forensic Applications
3406 http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
3408 * GNU Parallel was cited in: Scaleable Code Clone Detection
3409 http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
3411 * GNU Parallel was cited in: Clone Detection that scales
3412 http://scg.unibe.ch/archive/masters/Vogt14a.pdf
3414 * GNU Parallel was cited in: Scalable Positional Analysis for Studying
3415 Evolution of Nodes in Networks
3416 http://arxiv-web3.library.cornell.edu/pdf/1402.3797
3418 * GNU Parallel was cited in: Aggregate Characterization of User
3419 Behavior in Twitter and Analysis of the Retweet Graph
3420 http://arxiv.org/pdf/1402.2671v1
3422 * GNU Parallel was used (unfortunately without citation) in: Causal
3423 Network Models for Predicting Compound Targets and Driving Pathways
3425 http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
3427 * GNU Parallel was used (unfortunately without citation) in:
3428 Performance and Energy Efficiency of Common Compression /
3429 Decompression Utilities
3430 http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
3432 * GNU Parallel was used (unfortunately without citation) in: SpringFS:
3433 Bridging Agility and Performance in Elastic Distributed Storage
3434 http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
3436 * GNU Parallel was recommended (without citation) in: Redesigning the
3437 Specificity of Protein-DNA Interactions with Rosetta
3438 http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
3440 * GNU Parallel is co-distributed with RepeatExplorer
3441 http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
3443 * Convert MP3 to a scrolling spectrum waterfall plot video
3444 http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
3446 * PHP wrapper class for the GNU Parallel tool
3447 https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
3449 * Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
3451 * Copias de archivos con rsync y parallel
3452 http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
3454 * Single-Thread-Programme auf Multicore-Rechnern parallelisieren
3455 http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
3457 * Распараллеливаем процессы для ускорения вычислений и выполнения
3458 заданий в Linux http://savepearlharbor.com/?p=210480
3460 * Bug fixes and man page updates.
3465 * GNU Parallel was cited in: On the likelihood of multiple bit upsets
3467 http://arxiv-web3.library.cornell.edu/pdf/1401.1003
3469 * HaploClique uses GNU Parallel
3470 https://github.com/armintoepfer/haploclique
3472 * Scraping NSScreencast
3473 https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
3475 * 30 Cool Open Source Software I Discovered in 2013
3476 http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
3478 * [Unix] 13. The power of doing things in Parallel
3479 http://leetaey.tistory.com/384
3481 * Parallel the execution of a job that read from stdin
3482 http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
3484 * Mon Make à moi (6:38-11:50)
3485 http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
3487 * Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
3488 effizienter in der Shell arbeiten
3489 https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
3491 * Summary of GNU Parallel tutorial
3492 http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
3494 * Bug fixes and man page updates.
3499 * GNU Parallel now has a motto: For people who live life in the
3502 * Detect if the buffer dir $TMPDIR runs out of space. This changes a
3503 central piece of code, making this release alpha quality.
3505 * --keep-order --(n)onall will sort according to the sshlogin.
3507 * Detect the number of CPUs on DEC Tru64.
3509 * GNU sql: --list-tables for sqlite3.
3511 * GNU Parallel was cited in: Variational Message-Passing: Extension to
3512 Continuous Variables and Applications in Multi-Target Tracking
3513 http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
3515 * GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
3517 https://www.duo.uio.no/handle/10852/37431
3519 * GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
3521 http://repositorio.ul.pt/handle/10451/9436
3523 * GNU Parallel was cited in: Diacritization, automatic segmentation
3524 and labeling for Levantine Arabic speech
3525 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
3527 * GNU Parallel was cited in: Investigation of emotion classification
3528 using speech rhythm metrics
3529 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
3531 * GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
3532 and Non-Native Speaking Styles
3533 http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
3535 * GNU Parallel was cited in: Evolutionary optimization of wetlands
3537 http://dl.acm.org/citation.cfm?id=2480400
3539 * GNU Parallel was cited (unfortunately with wrong citation) in:
3540 RDBMS vs NoSQL: Performance and Scaling Comparison
3541 http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
3543 * GNU Parallel was used (without proper citation) in: Comprehensive
3544 Analysis Pipeline for Discovery of Human Genetic Variation
3545 http://www.google.com/patents/US20130311106
3547 * Encrypt and decrypt in parallel with GPG
3548 http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
3550 * Using GNU Parallel to create a SVM classifier
3551 http://ivanyu.me/blog/2013/12/01/parallel/
3553 * Parallel xz compression
3554 http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
3556 * Got CPUs to burn? Put 'em to work with GNU parallel
3557 http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
3560 http://pastebin.com/JmnB9ffq
3562 * Gnu Parallel for fun and profit
3563 https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
3565 * Parallelization of Exploitation
3566 http://rantsideasstuff.com/parallelization-of-exploitation/
3568 * Running assemblies in parallel
3569 https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
3571 * Procesando la contabilidad del PP
3572 http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
3574 * Mon make à moi (French)
3575 http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
3577 * Bug fixes and man page updates.
3582 * A citation notice is printed on stderr only if stderr is a terminal,
3583 the user has not specified --no-notice and the user has not run
3584 --bibtex once. This makes the release alpha quality.
3586 * --compress will compress temporary files. If the output is big and
3587 very compressible this will take up less disk space in $TMPDIR and
3588 possibly be faster due to less disk I/O.
3590 * --compress-program comtrols which program to use for compressing
3593 * --bar show progress as a progress bar compatible with zenity.
3595 * --resume can now be used with --result: Jobs already run will be
3598 * --transfer and --basefile support paths relative to the --workdir by
3599 inserting /./ into the path.
3601 * GNU Parallel was cited in: fastphylo: Fast tools for phylogenetics
3602 http://www.biomedcentral.com/1471-2105/14/334/abstract
3604 * Using GNU parallel
3605 http://davetang.org/muse/2013/11/18/using-gnu-parallel/
3607 * Techlux - GNU - Parallel (German)
3608 https://techlux.de/blog/2013/11/07/gnu-parallel/
3610 * awk, sed, bzip2, grep, wc на всех ядрах
3611 http://vk.com/page-30666517_45528467
3613 * 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
3614 http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
3616 * GNU Parallel (Japanese)
3617 http://jarp.does.notwork.org/diary/201311b.html#20131117
3619 * Bug fixes and man page updates.
3624 * --transfer files with /./ in the path will copy the files relative
3627 * The maximal command length is now cached in a file halfing the
3630 * GNU Parallel was cited in: Investigating speaker gender using rhythm
3631 metrics in Arabic dialects
3632 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
3634 * GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
3635 lastensuojelun asiakaskertomuksista
3636 https://tampub.uta.fi/handle/10024/84978
3638 * Some Additional Useful Bioinformatics Software
3639 http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
3641 * GNU Parallel Example Screen Cast (bil to Geotiff conversion)
3642 http://www.youtube.com/watch?v=PpF27eC7Mys
3644 * Using GNU Parallel to roll-your-own Map Reduce!
3645 http://www.rankfocus.com/hello-world/
3647 * Use multiple CPU Cores with your Linux commands
3648 http://www.rankfocus.com/use-cpu-cores-linux-commands/
3650 * Using GNU Parallel at HPC @ Uni.lu
3651 https://hpc.uni.lu/users/use_cases/
3653 * Scaling up with parallelization
3654 https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
3656 * How to teach yourself to be a technical tester
3657 http://infiniteundo.com/post/62421363463/qa-toc
3659 * Faster Rasters For All
3660 http://2013.foss4g.org/conf/programme/presentations/52/
3662 * Optimizing translated file downloads
3663 http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
3665 * EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
3666 http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
3668 * Best Practices for Amazon EMR
3669 http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
3671 * Computing checksums for backup
3672 https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
3674 * Un exemplu de utilizare a programului GNU parallel
3675 http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
3678 http://www.slideshare.net/drakeguan/part1-23705978
3680 * なんか気持ちよかです Gnu Parallel
3681 http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
3683 * Bug fixes and man page updates.
3688 * PDF-files of documentation is now included.
3690 * Cloning at warp speed 100 VMs in 1 minute using one command line
3691 http://www.beebotech.com.au/tag/command-line/
3693 * Calcul Quebec's introduction to GNU Parallel
3694 https://wiki.calculquebec.ca/w/GNU_parallel
3696 * Brincando com o GNU parallel
3697 http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
3699 * GNU Parallelで並列処理を行う
3700 http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
3702 * Bug fixes and man page updates.
3707 * A tutorial showing much of GNU Parallel's functionality. Spend an
3708 hour walking through the tutorial. Your commandline will love you
3709 for it. man parallel_tutorial
3711 * --line-buffer will buffer output on line basis. --group keeps the
3712 output together for a whole job. --ungroup allows output to mixup
3713 with half a line coming from one job and half a line coming from
3714 another job. --line-buffer fits between these two; it prints a full
3715 line, but will allow for mixing lines of different jobs.
3717 * --record-env records all variables and functions set. Useful to
3718 record the normal environment before using --env _.
3720 * --env _ exports all functions and variables to the remote server
3721 except for the ones recorded.
3723 * New signing key. Due to recommendations from NIST
3724 http://www.keylength.com/en/4/ the signing key was changed from
3725 1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
3727 * Agalma: an automated phylogenomics workflow
3728 http://arxiv.org/pdf/1307.6432
3730 * Job ad asking for GNU Parallel expertise
3731 http://seattle.craigslist.org/est/sof/4006079352.html
3733 * Transient Beowulf Clustering with GNU Parallel and SSHfs
3734 http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/
3736 * Aligning to unique regions
3737 http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/
3739 * Top 10 scripting tricks for basic bioinformatics
3740 http://students.washington.edu/bowmanjs/wordpress/?p=873
3742 * Using GNU Parallel to speed up and simplify data analyzes
3743 http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/
3745 * Compression of files in parallel using GNU parallel
3746 http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html
3748 * Using GNU Parallel with Amazon
3749 media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
3751 * Some useful comments on GNU Parallel
3752 https://news.ycombinator.com/item?id=6209767
3754 * Using GNU Parallel to count reads mapping to genes for multiple BAMs
3755 http://drduanehassane.com/blog/sequencing-resources
3757 * TimeMachineっぽいバックアップスクリプト
3758 http://rio.tc/2013/07/timemachine-1.html
3760 * GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
3761 http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab
3763 * Bug fixes and man page updates.
3768 * --round-robin with --pipe will write all blocks to already running
3771 * --env can now transfer Bash function for remote execution. That is
3774 * GNU Parallel was used (unfortunately with improper citation) in:
3775 Understanding the Impact of E-Commerce Software on the Adoption of
3776 Structured Data on the Web
3777 http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1
3779 * GNU Parallel was used (unfortunately with improper citation) in:
3780 CWI at TREC 2012, KBA track and Session Track
3781 http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf
3783 * Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
3784 Interactions through Optimal Wall Shaping.
3785 http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653
3787 * Using GNU parallel to convert images.
3788 http://www.brunokim.com.br/blog/?p=18
3790 * A quick way to parallelize.
3791 http://timotheepoisot.fr/2013/07/08/parallel/
3793 * GNU Parallel 20130522 ('Rana Plaza') 发布,并行作业执行.
3794 http://www.open-open.com/news/view/371301
3796 * Quite a few bug fixes and man page updates.
3801 * --xapply now recycles arguments if an input source has more
3802 arguments than others.
3804 * The sleep time between jobs is now both increased and decreased
3807 * 10 seconds installation check the signature using GnuPG if GnuPG is
3810 * Developer job asking for GNU Parallel expertise.
3811 http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central
3813 * A small utility program to run youtube-dl in parallel.
3814 https://github.com/dlh/youtube-dl-parallel
3816 * Parallelizing Freesurfer:
3817 http://blog.cogneurostats.com/?p=148
3819 * Bug fixes and man page updates.
3824 * --ctrlc is now default if --pipe is not used; thus making it
3825 possible to kill remotely started jobs simply by pressing Ctrl-C.
3827 * --timeout 200% now means kill jobs that take more than twice the
3828 time of the median run time of a job.
3830 * Jobs are now distributed round robin when having mulitiple
3831 --sshlogin instead of filling up one --sshlogin at a time.
3833 * niceload: darwin version of --io --mem --swap. Thanks to Anders F
3836 * Bug fixes and man page updates.
3841 * 10 seconds installation: wget -O - pi.dk/3 | sh
3843 * HPUX CPU/core detection. Thanks to Javier Tarradas.
3845 * CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
3847 * --ctrlc will send SIGINT to tasks running on remote computers and
3850 * --load now uses 'ps' to see immediately see the number of running
3851 processes instead of 'uptime' thus making --load react much faster.
3853 * Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
3854 bugs. Some of these required quite extensive changes making this
3855 release beta quality.
3857 * --retries works with --onall.
3859 * The new --load computation now works on FreeBSD 7.
3861 * --nice works under tcsh.
3863 * GNU Parallel is officially supported in NetBSD.
3864 http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html
3866 * GNU Parallel is accepted for openSUSE.
3867 http://software.opensuse.org/package/gnu_parallel
3869 * GNU Parallel can be installed under Microsoft Windows (CygWin).
3870 http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx
3872 * Excuses for not installing GNU Parallel.
3873 http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html
3875 * Job advert that requires GNU Parallel competence.
3876 http://versium.com/about/careers/
3878 * Parallelizing Batch Jobs for Fun and Profit.
3879 http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
3881 * Processing Transcription Start Sites(TSS) for the entire Mouse genome.
3882 http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/
3884 * GNU parallel is used throughout Scrimer.
3885 http://scrimer.readthedocs.org/en/latest/
3887 * GNU Parallel helped making public documents searchable.
3888 http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html
3890 * Identifying big movie files (German).
3891 http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/
3893 * Bug fixes and man page updates.
3898 * --resume works with --pipe.
3900 * --resume-failed will go through --joblog, redo the failed jobs and
3901 then continue like --resume.
3903 * Negative positional arguments count from the end: {-1} means the
3904 last argument, {-2} the second to last.
3906 * NetBSD CPU detection.
3908 * --blocksize increases exponentially if it smaller than a full
3911 * Processing n-line records (--pipe -L n) is now much faster.
3913 * --tollef is obsoleted after discussion on the mailing list.
3915 * GNU Parallel is the highest rated tool on:
3916 http://www.biostars.org/show/tools/?sort=votes&since=all%20time
3918 * GNU Parallel was loved during FSFE's #ilovefs campaign.
3919 http://fsfe.org/news/2013/news-20130212-01.en.html
3921 * Using GNU Parallel with s3cmd (Japanese).
3922 http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html
3924 * Intro to GNU Parallel (Chinese).
3925 http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/
3927 * Bug fixes and man page updates.
3932 * --sshdelay Delay starting next ssh by secs seconds. GNU parallel
3933 will pause secs seconds after starting each ssh. secs can be less
3936 * Official OpenBSD port:
3937 http://ftp.openbsd.org/ports/sysutils/parallel/
3939 * Official DragonFlyBSD package:
3940 http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/
3942 * Post about niceload in Hungarian:
3943 http://commandline.blog.hu/2013/01/02/niceload
3945 * 自炊スキャンデータをKobo Gloに最適化
3946 http://interstadial.wordpress.com/2013/01/20/
3948 * GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
3949 http://oshiire.to/archives/1686
3951 * Bug fixes and man page updates.
3956 * --shebang-wrap makes is possible to parallelize scripts by putting
3957 parallel in the shebang line (the first #! line in scripts).
3959 * --delay puts in a delay after starting each job. Useful to avoid
3960 raceconditions and thundering herd problems.
3962 * --results now uses / as separator instead of TAB and thus creates
3963 subdirs. Thanks to Drew Frank.
3965 * parallel: OpenBSD CPU detection. Thanks to Michał Markowski.
3967 * niceload --sensor allows for negative numbers to signify a lower
3968 number means the limit is lower.
3970 * niceload --prg suspend a named program that is already running.
3972 * niceload multiple --pid suspend process ids that are already running.
3974 * Convertir des images avec find et imagemagick
3975 http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html
3977 * Bug fixes and man page updates.
3982 * niceload --sensor makes it possible to use a program to control if a
3983 program should be suspended.
3985 * GNU Parallel was part of the justification for Nordic Free Software
3987 https://fsfe.org/news/2012/news-20121112-01.html
3989 * Dateien schneller packen und konvertieren mit GNU parallel
3990 http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel
3992 * Processing images from Lunar Reconnaissance Orbiter Narrow Angle
3993 Camera http://lunokhod.org/?p=774
3995 * GNU Parallel is used in types2: Type and Hapax Accumulation Curves
3996 http://www.cs.helsinki.fi/u/josuomel/types2/
3998 * GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
3999 PCA-based system for Dictionary Learning and Encoding for Robust
4001 http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
4002 http://www.cse.iitm.ac.in/~mrsri/ppca.pdf
4004 * Mapreduce avec parallel, cat et une redirection
4005 http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection
4007 * GNU Parallel for Large Batches of Small Jobs
4008 https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf
4010 * GNU Parallel used in black belt tip (8:50-10:12)
4011 https://aws.amazon.com/apac/awspodcast/episode20/
4013 * Bug fixes and man page updates.
4018 * --results structures output files so they can be imported using
4019 Pandas (http://pandas.pydata.org/). Useful when doing simulations to
4020 select output from some arguments.
4022 * Use --env to transfer environment variables through ssh to remote
4025 * GNU Parallel is accepted for Ubuntu Quantal.
4026 http://packages.ubuntu.com/quantal/parallel
4028 * GNU Parallel was requested for OpenSUSE (go vote!)
4029 https://features.opensuse.org/314461
4031 * Kneth's Korner: Map/Reduce and GNU Parallel
4032 http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html
4034 * Blog post in Japanese by Siguniang.
4035 https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
4036 (Siguniang mentions the logo is called 'The Cafe Wall Illusion')
4037 http://www.michaelbach.de/ot/ang_cafewall/index.html
4039 * GNU Parallel, where have you been all my life?
4040 http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
4042 * Reference-free ddRADseq analysis tools uses GNU Parallel.
4043 https://github.com/brantp/rtd#readme
4045 * When bash just isn’t quick enough.
4046 https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
4048 * Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
4049 http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
4051 * GNU Parallel Notes.
4052 http://xed.ch/help/parallel.html
4054 * Bug fixes and man page updates.
4059 * Due to a bugfix the main flow has changed. Making this release beta
4062 * Parallel Proxy Scraper & Checker Tool
4063 https://www.youtube.com/watch?v=iXCeR_XsP6o
4065 * Bug fixes and man page updates.
4070 * GNU Parallel was presented at Chiang Mai Bar Camp
4071 http://barcampchiangmai.org/
4073 http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/
4075 * I don't always max out all my CPUs, but when I do, I do it with GNU
4077 http://memegenerator.net/instance/22638454
4079 * Bug fixes and man page updates.
4084 * '-L n --pipe' will use records of n lines. This is useful when
4085 processing data that have fixed records with a fixed number of
4088 * --filter-hosts will remove down hosts. For each remote host: check
4089 that login through ssh works. If not: do not use this host.
4090 Currently you can not put --filter-hosts in a profile, $PARALLEL,
4091 /etc/parallel/config or similar. This is because GNU Parallel uses
4092 GNU Parallel to compute this, so you will get an infinite loop. This
4093 will likely be fixed in a later release.
4095 * --pipe now uses fork() instead of busy wait. The performance should
4096 be better on computers with >10 cores while remaining the same on
4097 computers with few cores.
4099 * GNU Parallel will be represented at Chiang Mai Bar Camp.
4100 http://barcampchiangmai.org/
4102 * Indexing Big Data on Amazon AWS: The Screencast
4103 (Check out his T-shirt at 18:40-21:00).
4104 http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/
4106 * biotoolbox uses GNU Parallel.
4107 https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper
4109 * Spiceweasel uses GNU Parallel.
4110 https://github.com/mattray/spiceweasel
4112 * GNU Parallel part of The Administrators Challenge.
4113 http://challenge.twistedrack.com/questions/qs3.php
4115 * Finding Oldest Firefox Code using GNU Parallel.
4116 http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/
4118 * Bug fixes (quite a few for remote job running) and man page updates.
4123 * Timings in --joblog now with milliseconds.
4125 * Thesis using GNU Parallel (correctly cited; hooray!).
4126 http://scholarworks.sjsu.edu/etd_projects/222/
4129 http://www.perzl.org/aix/index.php?n=Main.Parallel
4131 * Prokka uses GNU Parallel.
4132 http://bioinformatics.net.au/prokka-manual.html
4134 * GNU Parallel was presented at MUUG.
4135 http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/
4137 * Blog post: Manipulating many or large files with GNU parallel.
4138 http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html
4140 * Blog post: Running commands in parallel using bash.
4141 http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html
4143 * Blog post in Hungarian.
4144 http://commandline.blog.hu/2012/05/03/gnu_parallel
4146 * Popularity of GNU Parallel in Debian explodes.
4147 http://qa.debian.org/popcon-graph.php?packages=parallel
4149 * Bug fixes and man page updates.
4154 * A race condition bug caused restructuring of a central piece of the
4155 code. Thus this release of GNU Parallel should be considered beta
4158 * sql --dbsize will now list sizes of all databases if given no
4161 * GNU Parallel is now in Debian Unstable.
4162 apt-get install parallel
4164 * Article: Computational and experimental analyses of
4165 retrotransposon-associated minisatellite DNAs in the soybean genome.
4166 http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf
4168 * Blog post: GNU parallel - the best thing since sliced bread.
4169 https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/
4171 * Blog post: GNU Parallel makes everything faster.
4172 http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html
4174 * Blog post (German): Howto: GNU parallel.
4175 http://d24m.de/2012/04/05/howto-gnu-parallel/
4177 * Blog post: Running in Parallel
4178 http://interactivity.ifactory.com/2012/04/running-in-parallel/
4180 * 20000 watched the first intro video.
4183 * The first 5 have received their GNU Parallel merchandise
4184 https://www.gnu.org/software/parallel/merchandise.html
4186 * Bug fixes and man page updates.
4191 * Parallel Process Database Dumps.
4192 http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html
4194 * Using GNU Parallel to process images from Mars.
4195 http://lunokhod.org/?p=468
4197 * Using GNU Parallel with bzgrep.
4198 http://filip.rembialkowski.net/did-you-know-gnu-parallel/
4200 * Bug fixes and man page updates.
4205 * --workdir . will use the current working dir. If the current working
4206 dir is beneath your home dir, the value . is treated as the relative
4207 path to your home dir. This means that if your home dir is different
4208 on remote computers (e.g. if your login is different) the relative
4209 path will still be relative to your home dir.
4211 * A texinfo file is now generated from the POD file using pod2texi.
4213 * The bioinformatics article "Fast large-scale clustering of protein
4214 structures using Gauss integrals" mentions GNU Parallel. They forgot
4215 to add the reference. Please remember --bibtex if you use GNU
4216 Parallel in an article.
4217 http://bioinformatics.oxfordjournals.org/content/28/4/510.short
4219 * The first supporter received his merchandise. Did you order yours?
4220 https://www.gnu.org/software/parallel/merchandise.html
4222 * How to use GNU Parallel with samtools.
4223 http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html
4225 * How to use GNU Parallel for vacuuming PostgreSQL tables.
4226 http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/
4228 * Converting e-books with Calibre and GNU Parallel.
4229 http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/
4231 * Using GNU Parallel for tailing logfiles from multiple servers.
4232 http://silviud.blogspot.com/2012/02/shell-parallel-processing.html
4234 * Bug fixes and man page updates.
4239 * --header : uses the first input line as column names and you can
4240 then use {colname} as a replacement string in the command. This also
4241 works with multiple :::'s.
4243 * --header <regexp> matches a header as a regular expression and
4244 repeats the header for each block with --pipe.
4246 * --resume resumes from the last unfinished job. Useful if you stop
4247 GNU Parallel and restart it later with the same arguments.
4249 * niceload now propagates exit status correctly.
4251 * Show your support for GNU Parallel. For a limited time you can get a
4252 GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
4253 https://www.gnu.org/software/parallel/merchandise.html
4255 * Options -g -B -T -U -W -Y are retired as warned 6 months ago.
4257 * GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
4258 to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128
4260 * Article in IEEE Software on GNU Parallel. Thanks to Diomidis
4261 Spinellis. http://www.spinellis.gr/blog/20110911/
4263 * An article on Narwhal which uses GNU Parallel. They forgot to add
4264 the reference. Please remember --bibtex if you use GNU Parallel in
4266 http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf
4268 * Blog post on using GNU Parallel to speed up BLAST queries:
4269 http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html
4271 * Video showing Wake-on-LAN with GNU Parallel.
4272 https://www.youtube.com/watch?v=0mB-yIyKFLQ
4274 * Using GNU Parallel with Solr.
4275 http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html
4277 * First job ad including GNU Parallel:
4278 http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex
4280 * Bug fixes and man page updates.
4285 * --timeout will now kill grandchildren.
4287 * Interview in Hacker Public Radio.
4288 http://hackerpublicradio.org/eps.php?id=0860
4290 * Blog post in Chinese.
4291 http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html
4293 * Bug fixes and man page updates.
4298 * GNU Parallel package for Fedora.
4299 https://admin.fedoraproject.org/pkgdb/acls/name/parallel
4301 * Using GNU Parallel with Mozilla cross referencing.
4302 https://blog.mozilla.com/it/2011/11/15/mxr-improvements/
4304 * Neat flash presentation of GNU Parallel.
4305 http://prezi.com/0nq74b2elgtx/about-gnu-parallel/
4307 * How to create tar files of dirs in parallel.
4308 https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/
4310 * Article in Admin Network&Security by Ben Martin.
4311 http://www.admin-magazine.com/HPC/Articles/GNU-Parallel
4313 * Blog post in Polish.
4314 http://blog.tiger.com.pl/2011/01/05/gnu-parallel/
4316 * Blog post on using GNU Parallel of Mac OS X.
4317 http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/
4319 * Blog post in English by researcher.
4320 http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/
4322 * Blog entry in Chinese.
4323 http://blog.csdn.net/tossense/article/details/6889026
4325 * Blog entry in Japanese on managing many servers.
4326 http://hiroakis.com/blog/2011/11/13/gnu-parallel/
4328 * GNU Parallel is now part of ppbs.
4329 http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html
4331 * How to use GNU Parallel with MCX.
4332 http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster
4334 * Bug fixes and man page updates.
4339 * --tag prepends lines with the argument(s). If used with --(n)onall
4340 the line will be prepended with the sshlogin instead.
4342 * --shellquote does not run the command but quotes it using \'s.
4343 Useful for making quoted composed commands.
4345 * --profile can now be repeated merging multiple profiles.
4347 * --bibtex now gives the BibTeX entry.
4348 Thanks to Aleksandr Levchuk for testing.
4350 * Makefile for simple .deb package.
4351 cd packager/debian; make
4353 * sql: --list-databases lists the databases.
4355 * GNU Parallel officially in Fedora 16
4356 http://www.spinics.net/lists/fedora-package-announce/msg67130.html
4358 * Blog post on recompression FLAC audio.
4359 http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html
4361 * The most complex use of ::: I have seen so far.
4362 http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html
4364 * Example of using GNU Parallel with sudo.
4365 http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files
4367 * Use wget and gnu parallel to download mp3s at rocket speed.
4368 http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at
4370 * First CV referring to GNU Parallel.
4371 http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602
4373 * Cartwright labs usage of GNU Parallel.
4374 http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck
4376 * Bug fixes and man page updates.
4381 * --timeout implemented so that slow commands can be killed
4383 * CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.
4385 * Example of a parallel webcrawler in the man page.
4387 * Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
4388 http://wirtel.be/2011/07/15/rsync_parallel/
4390 * Blog post in Japanese.
4391 http://dminor11th.blogspot.com/2011/08/gnu-parallel.html
4393 * Blog post about optimizing JPEGs. Thanks to Thomas Jost.
4394 http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/
4396 * Bug fixes and man page updates.
4401 * niceload: --hard will suspend a program if a limit is reached - as
4402 opposed to just slowing the program down.
4404 * niceload: --soft will slow the program down - as opposed to
4405 suspending the program completely.
4407 * niceload: --run-io will slow down a program if disk io goes above a
4410 * niceload: --run-load will slow down a program if loadaverage goes
4411 above a certain limit.
4413 * niceload: --run-mem will slow down a program if free memory goes
4414 below a certain limit.
4416 * niceload: --run-noswap will slow down a program if the computer is
4419 * niceload: --start-io, --start-load, --start-mem, --start-noswap will
4420 defer starting a program until the system is below the limit.
4422 * --io, --load, --mem, and --noswap sets both --run-* and --start-*.
4424 * niceload got a major rewrite and is now object oriented.
4426 * GNU Parallel was presented at Nordic Perl Workshop 2011.
4427 http://conferences.yapceurope.org/npw2011/talk/3416
4429 * Blog post about zcat and GNU Parallel. Thanks to Dr. John.
4430 http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/
4432 * 2 blog posts in Japanese. Thanks to Negima.
4433 http://d.hatena.ne.jp/negima1976/20110607/1307412660
4434 http://d.hatena.ne.jp/negima1976/20110628/1309252494
4436 * Blog post for bioinformatics. Thanks to Chris Miller.
4437 http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/
4439 * Bug fixes and man page updates.
4444 * --onall will run all the jobs on all the computers. This is useful
4445 for systemadinistrators having multiple servers.
4447 * --nonall runs like --onall but reads no arguments from stdin
4448 (standard input), so is possible to do:
4449 parallel --nonall -S computer1,computer2 uptime
4451 * Context replace now works with multiple input sources:
4452 parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c
4454 * --noswap do not start a job on a server that is swapping.
4456 * Article: Parallel processing without Hadoop!
4457 http://www.solutionhacker.com/parallel-processing-without-hadoop/
4459 * Article in Linux Magazine (Spanish). Thanks to Ben Martin.
4460 http://www.linux-magazine.es/issue/67/
4462 * First blog post in Korean. Thanks to 민병국.
4463 http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#
4465 * Blog post in Japanese. Thanks to Naoya Nakazawa.
4466 http://www.sssg.org/blogs/naoya/archives/2003
4468 * Blog post in English. Thanks to Dagon.
4469 http://hekate.homeip.net/2011/05/29/
4471 * Bug fixes and man page updates.
4476 * Multiple ::: can be put on the command line and will be treated
4477 similar to contents from multiple -a's.
4479 * ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
4480 refer to inputs from the different input sources.
4482 * --xapply is now needed to get xapply's behaviour of reading one line
4483 from each of the input sources.
4485 * Multiple input sources will cause all combinations of arguments from
4486 the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
4487 a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
4490 * Implemented {//} for the input line with the basename removed (dirname).
4492 * New video showing the new ::: and :::: input sources.
4493 http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc
4495 * GNU Parallel now has a logo.
4496 http://www.gnu.org/software/parallel/logo.png
4498 * Article about GNU SQL in USENIX Magazine ;login: (print)
4499 http://www.usenix.org/publications/login/2011-04/
4501 * Using GNU Parallel with EC2. Thanks to Kevin Wu.
4502 http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in
4504 * Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
4505 http://d.hatena.ne.jp/ichii386/20110426
4507 * Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
4508 http://www.hollenback.net/index.php/MacportsParallel
4510 * Robert from Echo One discusses using processes instead of threads:
4511 http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/
4513 * How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
4514 http://www.kevinstock.org/2011/04/using-the-ri-cluster/
4516 * Short article about using GNU Parallel with lame:
4517 http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion
4519 * Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
4520 http://blog.clouder.jp/archives/001140.html
4522 * BBC Research & Development uses GNU Parallel:
4523 http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml
4525 * Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
4526 http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/
4528 * Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
4529 http://derek.chezmarcotte.ca/?p=286
4531 * Bug fixes and man page updates.
4536 * {#} now works as an alias for $PARALLEL_PID.
4538 * --eta now estimates way more accurately.
4540 * CPU detection code for AIX thanks to Christian Netrwal.
4542 * --joblog contains exitcode.
4544 * Thanks to Ævar Arnfjörð Bjarmason for reading my code.
4546 * GNU Parallel was presented at:
4547 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4548 - OSAA.dk, Aarhus, 2011-04-12
4550 * Blog entry in Japanese. Thanks to Riywo.
4551 http://blog.riywo.com/2011/04/19/022802
4553 * Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
4554 J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel
4556 * First example of using GNU Parallel in Hebrew. Thanks to omry.
4559 * Intro video got past 10000 hits.
4560 http://www.youtube.com/watch?v=OpaiGYxkSuQ
4562 * Bug fixes and man page updates.
4567 * --tollef to be switch compatible with Tollef's parallel. This will
4568 cause -l to mean --load, and the argument separator will be --
4571 * --gnu will force GNU Parallel to behave like GNU Parallel even if
4574 * Site wide config file: /etc/parallel/config
4576 This should solve the issue with some packagers renaming GNU
4577 Parallel to gparallel to avoid the naming conflict.
4579 By putting --tollef in the site wide config file you can deinstall
4580 Tollef's parallel and install GNU Parallel instead without any
4581 change for users or scripts. This is useful for packagers that
4582 currently rename GNU Parallel or simply do not distribute GNU
4583 Parallel because the command name conflicts with Tollef's parallel.
4585 * -L 0 -n 0, and -N 0 implemented. They will read one argument,
4586 but insert 0 arguments on the command line. Useful if you just want
4587 to run the same command with the same arguments a number of times.
4589 * GNU Parallel is now in Fink. Thanks to Jesse Alama.
4590 http://pdb.finkproject.org/pdb/package.php/parallel
4592 * Opscode Cookbook for Chef. Thanks to Joshua Timberman.
4593 https://github.com/opscode/cookbooks/tree/master/gnu_parallel
4595 * Man page examples translated into Japanese. Thanks to Koshigoe.
4596 http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13
4598 * GNU Parallel will be presented at:
4599 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4600 - OSAA.dk, Aarhus, 2011-04-12
4602 * Video of presentation from FSCONS 2010-11-07. The presenter was
4603 _really_ hoarse that day (Something to do with loads of alcohol the
4604 night before). http://vimeo.com/20838834
4606 * Review with examples in German. Thanks to M. Nieberg.
4607 http://kenntwas.de/2011/linux/gnu-parallel/
4609 * A review of the --pipe option in German. Thanks to Mathias Huber.
4610 http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten
4612 * A small example of grepping maillogs. Thanks to François Maillet.
4613 http://www.francoismaillet.com/blog/?p=399
4615 * Using GNU Parallel instead of xargs. Thanks to James Cuff.
4616 http://blog.jcuff.net/2011/02/on-train-ride-in.html
4618 * Bug fixes and man page updates.
4623 * --pipe splits piped data into blocks. Each block is piped to a
4624 program for processing. The piping and the programs will be run in
4625 parallel. Useful if the data you want to process is data for a
4626 program and not arguments.
4628 * --blocksize sets the blocksize in bytes for --pipe. The blocksize is
4629 approximate. It can deviate as much as the size of one record.
4632 * --recstart sets the string matching the start of a
4633 record. Default is "".
4635 * --recend sets the string matching the end of a
4636 record. Default is '\n'. To specify none use --recend "".
4638 If both --recstart and --recend are set, the end of a record must be
4639 followed immediately by a start of a record. This is useful if
4640 either recend or recstart can occur in the middle of a record.
4642 * --remove-rec-sep removes the string matched by --recstart and
4645 * --regexp will make GNU Parallel treat --recstart and --recend as
4646 regular expressions.
4648 * --output-as-files will put the output of the programs into files and
4649 instead of giving the output GNU Parallel will output the name of
4652 * -N if used with --pipe sets the number of records to read.
4654 * New video showing --pipe at
4655 http://www.youtube.com/watch?v=1ntxT-47VPA
4657 * GNU Parallel was presented at FOSDEM.
4659 * Article in USENIX Magazine ;login: (print)
4660 http://www.usenix.org/publications/login/2011-02/
4662 * GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
4663 https://www.ohloh.net/p/gnu-parallel
4665 * Advanced recursive example. Thanks to Ruarí Ødegaard.
4666 http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu
4668 * Small example on using GNU Parallel through 0install (German).
4669 http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/
4671 * Bug fixes and man page updates.
4676 * --joblog makes a simple log of completed jobs.
4678 * -X now spreads arguments between job slots when reaching last
4679 argument. Use -j1 to avoid this.
4681 * People on the email list have voted -j+0 to be the new default
4684 * First review in Polish. Thanks to Patryk Krawaczyński.
4685 http://nfsec.pl/root/2458
4687 * Review in Spanish (in print).
4688 https://www.linux-magazine.es/issue/67/moreinfo.html
4690 * Review in English. Thanks to Brian Gough.
4691 http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/
4693 * Review in French. Thanks to Denis Dordoigne.
4694 http://linuxfr.org/2010/12/29/27715.html
4696 * Review in Spanish.
4697 http://gufete.net/index.php?entry=entry110116-200022
4699 * Article with advanced recursive example. Thanks to Ruarí Ødegaard
4700 http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel
4702 * Use case for memcache.
4703 http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/
4705 * Bug fixes and man page updates.
4710 * GNU niceload is now part of GNU Parallel. GNU niceload slows down a
4711 program if the load average is above a certain limit.
4713 * Implemented --tmpdir to buffer standard output and standard error in
4716 * Implemented --load to wait until the load is below a limit before
4717 starting another job on that computer.
4719 * Implemented --nice set the niceness of jobs running both locally and
4722 * Implemented --dry-run to print the job without running it.
4724 * Implemented --tty as the old default of assigning a tty to the first
4725 job causes problems.
4727 * Review with focus on clusters. Thanks to Taylor Gillespie
4728 http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html
4730 * Review with focus on protein similarity.
4731 http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel
4733 * Review in Spanish.
4734 http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux
4736 * Quite a few bug fixes and man page updates.
4741 * Implemented {/} for the input line with the path removed (basename).
4743 * Implemented {/.} for the input line with extension and path removed
4746 * Output from --progress is now sent to standard error instead of
4749 * --eta was broken and counted down from 0. Now fixed.
4751 * Standard output and standard error are flushed after every job so if
4752 standard output does not end with a newline it will still be grouped
4753 with the rest of standard output.
4755 * --command, -c, --file, and -f are now removed as options. They were
4756 never used in practice.
4758 * GetOptionsFromArray rewritten to work with old Perl libraries.
4760 * The file COPYING now contains the GNU General Public License 3
4762 * Major rewrite to make the code more object oriented and easier to
4763 maintain in the future.
4768 * Using -j myfile the number of jobs can be changed while GNU Parallel
4769 is running simply by changing the content of myfile.
4771 * Implemented --profile to use different .parallel/config for
4772 different situations.
4774 * Ugly newlines in $PARALLEL and .parallel/config are no longer
4775 needed. Instead you have to use \ in front of special shell
4778 * --workdir puts the files transferred to remote machines in a
4779 specified directory.
4781 * $PARALLEL_PID is set to the process id of GNU Parallel.
4783 * $PARALLEL_SEQ is set to the sequence number of the job.
4785 * -v now only shows the command to run. Use -v -v to show the
4788 * Slow spawning error is now only a warning.
4790 * If stdin is a tty and input is read from stdin you now get a
4793 * GNU sql: \n and \x0a in arguments is replaced with newline.
4795 * Patch for Debian package and spelling mistakes. Thanks to Rogério
4796 Brito <rbrito at ime dot usp dot br>
4798 * Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
4799 palardy at gmail dot com>
4801 * FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>
4803 * Pardus package. Thanks to Fethican Coşkuner
4804 <fethicanc at gmail dot com>
4806 * First review in Chinese. Thanks to 曾義峰:
4807 http://antbsd.twbbs.org/~ant/wordpress/?p=2876
4809 * First review in print:
4810 http://www.linux-magazine.com/Issues/2010 Nov 2010
4812 * First review in Spanish:
4813 http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando
4815 * First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
4817 http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html
4819 * Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
4820 http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life
4822 * 5000 views of the intro video:
4823 http://www.youtube.com/watch?v=OpaiGYxkSuQ
4825 * As usual a bunch of bugfixes and more usage examples in the man
4828 * GNU Parallel was presented at FSCONS 2010-11-07:
4829 http://www.fscons.org/fs/gnu-parallel Hopefully the
4830 video will be online soon.
4835 * See GNU Parallel live at FSCONS 2010-11-07:
4836 http://www.fscons.org/fs/gnu-parallel
4838 * Untested Debian and xUbuntu packages available through OpenSUSE
4840 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
4842 * Using --retries a job will be retried on another computer if it
4843 fails. This is useful if some jobs fail for no apparent reason (such
4844 as network failure).
4846 * BSD xargs -o (open /dev/tty) is now default for the job running in
4847 foreground. Useful for interactive commands like:
4848 ls | parallel -Xuj1 vi
4850 * GNU sql now supports SQLite.
4852 * Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.
4854 * GNU sql now support --list-tables
4856 * Alias for DBURL can contain '?query' part with %-quoting.
4861 * Using --shebang GNU Parallel can be used as the parser for a script.
4862 E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
4865 * First community generated bugfixes
4867 * Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
4868 at altlinux dot org>
4870 * Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
4871 <sunfreeware at gmail.com>
4873 * Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
4874 available through OpenSUSE build service:
4875 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
4877 * Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
4878 http://www.andrew-mcfague.com/linux/utilities-linux/
4879 commands-every-serious-nix-user-should-know/#parallel
4881 * First 1000 views of the intro video
4883 * sql - a small script to access sql bases from the command line which
4884 is a handy companion to parallel --colsep
4889 * Counting semaphore functionality: start a job in the background. If
4890 N jobs are already running, wait for one to complete. Examples:
4891 sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
4892 sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait
4894 * With --colsep a table can be used as input. Example:
4895 cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}
4897 * --trim can remove white space around arguments.
4899 * --sshloginfile '..' means use ~/.parallel/sshloginfile
4901 * Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
4904 * OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
4907 * NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>
4909 * Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
4910 Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>
4912 * Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
4913 Thanks to Phil Sung <psung at alum dot mit dot edu>
4918 * Arguments can now be given on the command line. Example:
4919 parallel bzip2 ::: *.txt
4921 * xapply like functionality. Example:
4922 parallel diff {1} {2} :::: filelist1 filelist2
4923 parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2
4925 * Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>
4927 * Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
4930 * -L -l -n -s now implies -X unless -m is set
4935 * New video showing the new options.
4936 http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
4937 http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/
4939 * 100% options complete with xargs. All options for xargs can now be
4940 used in GNU Parallel - even the more exotic.
4942 * --basefile for transferring basedata. When running jobs on remote
4943 computers --basefile will transfer files before the first jobs is
4944 run. It can be used to transfer data that remains the same for each
4945 job such as scripts or lookup tables.
4947 * --progress shows progress. To see how many jobs is running on each
4948 server use --progress. It can be turned on even after GNU Parallel
4951 * --eta shows estimated time left in seconds.
4953 * --halt-on-error stops if an error occurs. GNU Parallel will default
4954 to run all jobs - even if some of them fail. With --halt-on-error
4955 GNU Parallel can ignore errors, wait for the currently running jobs
4956 to finish, or stop immediately when an error occurs.
4961 * GNU Parallel now has support for running jobs on remote machines
4963 * Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
4964 http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech
4969 * GNU Parallel is now official GNU software