5 * Bug fixes and man page updates.
7 News about GNU Parallel:
9 * How to use GNU Parallel
10 https://techtipbits.com/linux/how-to-use-gnu-parallel/
12 * How to Speed Up Bash Scripts with Multithreading and GNU Parallel
13 https://adamtheautomator.com/how-to-speed-up-bash-scripts-with-multithreading-and-gnu-parallel/
15 * Use Parallel to split by line
16 https://madflex.de/use-parallel-to-split-by-line/
18 * Optimizing long batch processes or ETL by using buff/cache properly
19 II (parallelizing network operations)
20 http://www.elsotanillo.net/2021/06/optimizing-long-batch-processes-or-etl-by-using-buff-cache-properly-ii-parallelizing-network-operations/
22 * Parallelization 3: GNU Parallel https://www.youtube.com/watch?v=Rl06WD60afA
29 * --plus includes {%%regexp} and {##regexp}.
31 * Bug fixes and man page updates.
33 News about GNU Parallel:
35 * Batch Calculate and Verify MD5 Checksum With GNU Parallel
36 https://omicx.cc/posts/2021-04-28-calculate-and-verify-md5-checksum-with-gnu-parallel/
38 * HerrComp Gnu parallel, c++11 threads 2021 04 28
39 https://www.youtube.com/watch?v=wDd9F9nn0qA
41 * Distributing embarrassingly parallel tasks GNU Parallel
42 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
44 * Job Parallelization on Niagara
45 https://www.maryamdaryalal.com/post/job-parallelization-on-niagara
47 * Use Parallel to split by line
48 https://madflex.de/use-parallel-to-split-by-line/
50 * m1 multi-core batch convert with gpu parallel + ffmpeg
51 https://www.youtube.com/watch?v=hAuc0YsXv6A
58 * Bug fixes and man page updates.
60 News about GNU Parallel:
62 * Bioinformatics tutorials - linux and shell advanced - parallel
63 https://www.youtube.com/watch?v=5leL8pyl0XA
65 * GNU Parallel for quick gains
66 https://edbennett.github.io/high-performance-python/04-gnu-parallel/index.html
68 * Processing Linux Commands in Parallel
69 https://www.baeldung.com/linux/processing-commands-in-parallel
72 https://docs-research-it.berkeley.edu/services/high-performance-computing/user-guide/running-your-jobs/gnu-parallel/
74 * GNU Parallel 활용 가이드https://genoglobe.com/kribb/gnu_parallel
76 * Parallel Grep and Awk
77 https://www.highonscience.com/blog/2021/03/21/parallel-grep/
79 * Getting things done with shell scripting
80 https://doma.dev/blog/get-things-done-with-bash/
85 * Bug fixes and man page updates.
87 News about GNU Parallel:
89 * The very first version of Parallel dated 2002-01-06 was found in an
100 (".PHONY : job$jobnr\n",
104 unshift @makefile, "all : ",(map { "job$_ " } 1 .. $jobnr),"\n";
106 open (MAKE, "| make -k -f - -j $processes") || die;
107 print MAKE @makefile;
110 * Introduction to GNU Parallel
111 https://www.youtube.com/watch?v=Kj-6JkAqw-8
113 * Using GNU Parallel with GooseSLURM
114 https://readthedocs.org/projects/gooseslurm/downloads/pdf/latest/#chapter.7
117 https://github.com/lijingbu/omics/blob/main/why_gnu_parallel.md
122 * --filter only run jobs where the filter is true. The filter can
123 contain replacement strings and Perl code such as: '{1} < {2}+1'
125 * --template takes a text file as a template with replacement
126 strings. Then it replaces the replacement strings and saves it
127 under a new filename.
129 * --plus implements {0%} {0#} replacement string for zero padded slot
132 * Warn that you probably mean -d '\r\n' if the first 3 values end in
135 * {= perlexpression =} must return the same value, if run twice on the
138 * Man pages available as .rst-format.
140 * Bug fixes and man page updates.
142 News about GNU Parallel:
144 * A short tutorial on Gnu Parallel
145 https://www.polarmicrobes.org/a-short-tutorial-on-gnu-parallel/
147 * 5 reasons why I love coding on Linux
148 https://opensource.com/article/21/2/linux-programming
150 * Simple Tutorial to install & use GNU Parallel
151 https://medium.com/analytics-vidhya/simple-tutorial-to-install-use-gnu-parallel-79251120d618
153 * LiDO3 - first contact
154 https://www.lido.tu-dortmund.de/cms/de/LiDO3/LiDO3_first_contact_handout.pdf
156 * Rill Stage 2-1: Ways of command-line data analysis
157 https://blog.jastix.biz/post/rill-stage-2-1-cli-data-analysis/
159 * Introduction to GNU Parallel
160 https://blog.knoldus.com/introduction-to-gnu-parallel/
162 * GNU Parallel https://www.hahwul.com/cullinan/parallel/
167 * --memsuspend suspends jobs when there is little memory free. This
168 way you can run jobs in parallel that added up potentially will take
169 up more RAM than is available.
171 * $PARALLEL_ARGHOSTGROUPS and the replacement string {agrp} will give
172 the hostgroup given on the argument when using --hostgroup.
174 * Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss()
175 yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm()
176 yyyymmdd() hash($str)
178 * Bug fixes and man page updates.
180 News about GNU Parallel:
182 * Software Engineering For Scientists
183 https://canvas.stanford.edu/courses/133091
185 * Optional Individual Submission 4 Job Handling - GNU Parallel
186 https://www.youtube.com/watch?v=-tX0bFAYAxM
188 * 关于gnu parallel:GnuParallel:在集群上并行化脚本,脚本将文件写入主
189 节点https://www.codenong.com/25172209/
192 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
197 * --pipe engine changed making --pipe alpha quality.
199 * --results -.json outputs results as JSON objects on stdout (standard
202 * --delay 123auto will auto-adjust --delay. If jobs fail due to being
203 spawned too quickly, --delay will exponentially increase.
205 * --plus sets {hgrp} that gives the intersection of the hostgroups of
206 the job and the sshlogin that the job is run on.
208 * Bug fixes and man page updates.
210 News about GNU Parallel:
212 * Best practices for accelerating data migrations using AWS Snowball
214 https://aws.amazon.com/blogs/storage/best-practices-for-accelerating-data-migrations-using-aws-snowball-edge/
216 * Pass the Output of a Command as an Argument for Another
217 https://www.baeldung.com/linux/pass-cmd-output-as-an-argument
219 * Warwick RSE Drop-in - Workflow Management Part 2 - GNU Parallel
220 https://www.youtube.com/watch?v=t_v2Otgt87g
225 * Bug fixes and man page updates.
227 News about GNU Parallel:
229 * https://bash-prompt.net/guides/gnu-parallel-multi-server/
234 * --termseq now works for jobs running remotely.
236 * parsort: Performance optimized for 64-core machines.
238 * Bug fixes and man page updates.
240 News about GNU Parallel:
242 * Juan Sierra Pons has made a testimonial:
243 http://www.elsotanillo.net/wp-content/uploads/GnuParallel_JuanSierraPons.mp4
245 * 「翻译」在生物信息学中使用 GNU-Parallel
246 https://cloud.tencent.com/developer/article/1705499
251 * New CPU detection for GNU/Linux.
253 * Bug fixes and man page updates.
255 News about GNU Parallel:
257 * Aug 21, 2020 - More Unix tools
258 https://floki.blog/2020/08/more_unix_tools
265 * Max command line length is changed for MacOS - making this version
266 beta quality for MacOS.
268 * Bug fixes and man page updates.
275 * No new functionality
277 * Bug fixes and man page updates.
279 News about GNU Parallel:
281 * Tips for Running Jobs on your VM
282 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
284 * Introduction to GNU Parallel: Parallelizing Massive Individual Tasks
285 https://www.youtube.com/watch?v=QSFLTEyCKvo
288 http://www.hpc.lsu.edu/training/weekly-materials/2020-Spring/GNUParallel_Spring_2020.pdf
290 * Linux-Fu: Parallel Universe
291 https://hackaday.com/2020/06/29/linux-fu-parallel-universe/
293 * Resumable batch jobs with gnu parallel https://igor.io/parallel/
295 * Introducing Parallel into Shell
296 https://www.petelawson.com/post/parallel-in-shell/
298 * AV1 encoding parallelization with GNU Parallel
299 https://www.reddit.com/r/AV1/comments/fjvqp9/av1_encoding_parallelization_with_gnu_parallel/
301 * Beschleunigte Befehlsbearbeitung mit GNU Parallel
302 https://www.linux-community.de/ausgaben/linuxuser/2013/06/beschleunigte-befehlsbearbeitung-mit-gnu-parallel/
309 * No new functionality
311 * Bug fixes and man page updates.
313 News about GNU Parallel:
315 * GNU Parallel is used at NERSC:
316 https://www.nersc.gov/assets/Uploads/08-Workflows-20200616.pdf
318 * Resumable batch jobs with GNU Parallel https://igor.io/parallel/
320 * Lab Meeting technical talk
321 https://www.slideshare.net/hoffmanlab/gnu-parallel-194030490
323 * Open Sky Software Website Credits
324 https://www.openskysoftware.com/site-credits.htm
326 * Speed up your Python Scripts using Ubuntu and GNU Parallel
327 https://ecce.esri.ca/wpecce/2019/12/24/speed-up-your-python-scripts-using-ubuntu-and-gnu-parallel/
329 * Indispensable command-line tools
330 https://negfeedback.blogspot.com/2020/05/indispensable-command-line-tools.html
332 * GNU Parallel for simulations
333 http://pdebuyl.be/blog/2020/gnu-parallel-for-simulations.html
335 * Introduction to GNU parallel
336 https://bioinformaticsworkbook.org/Appendix/GNUparallel/GNU_parallel_examples.html
343 * While running a job $PARALLEL_JOBSLOT is the jobslot of the job. It
344 is equal to {%} unless the job is being retried. See {%} for
347 * While running a job $PARALLEL_SSHLOGIN is the sshlogin line with
348 number of cores removed. E.g. '4//usr/bin/specialssh user@host'
349 becomes: '/usr/bin/specialssh user@host'
351 * While running a job $PARALLEL_SSHHOST is the host part of an
352 sshlogin line. E.g. '4//usr/bin/specialssh user@host' becomes:
355 * --plus activates the replacement strings {slot} = $PARALLEL_JOBSLOT,
356 {sshlogin} = $PARALLEL_SSHLOGIN, {host} = $PARALLEL_SSHHOST
358 * Bug fixes and man page updates.
360 News about GNU Parallel:
362 * Portable Batch System (PBS) & GNU Parallel - Running a Program
363 Multiple Times in Parallel
364 https://www.youtube.com/watch?v=6ccbWu6Befo
366 * GNU Parallel przykład https://www.youtube.com/watch?v=gs_wG4Kt2G4
368 * Demo of LINUX APP - GNU PARALLEL - running multiple Gstreamer webcam
369 .sh scripts with only 1 command
370 https://www.youtube.com/watch?v=trQuA_wmWjg
375 This release celebrates GNU Parallel's 10 years as a GNU tool:
377 > commit ed2dfb1043768154d4e7678e01e10287155fa834
378 > Author: Ole Tange <ole@tange.dk>
379 > Date: Thu Apr 22 01:23:00 2010 +0200
381 > Name change: Parallel is now GNU Parallel.
382 > Basic structure for sshlogin and sshloginfile.
386 * parsort makes GNU sort run faster for files with more than 1M lines.
388 * Bug fixes and man page updates.
390 News about GNU Parallel:
392 * Several clusters have updated their documentation of GNU Parallel:
393 https://www.grid5000.fr/w/GNU_Parallel
394 https://research-it.berkeley.edu/virtual-training-running-jobs-parallel-savio
395 http://www.hpc.lsu.edu/training/archive/tutorials.php
397 * add_pho uses GNU Parallel: https://github.com/SeedlingsBabylab/add_pho
399 * GNU parallel使用笔记https://zhuanlan.zhihu.com/p/37340011
401 * Virtual Workshop: Running Jobs in Parallel on Savio
402 https://ais.berkeley.edu/events/virtual-workshop-running-jobs-parallel-savio/2020-04-20
404 * Free Concurrency with GNU Parallel
405 https://phili.pe/posts/free-concurrency-with-gnu-parallel/
410 * Bug fixes and man page updates.
412 News about GNU Parallel:
414 * The GNU Parallel course in Copenhagen is cancelled
415 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
417 * The GNU Parallel course in Århus is cancelled
418 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
420 * The 10 year anniversary may be cancelled, see
421 https://www.gnu.org/software/parallel/10-years-anniversary.html
423 * Running shell commands in parallel, via GNU Parallel
424 https://dev.to/saveriomiroddi/running-shell-commands-in-parallel-via-gnu-parallel-3a72
426 * Faster nmap scanning with the help of GNU parallel
427 https://badshah.io/experiment/faster-nmap-scanning-with-the-help-of-gnu-parallel/
432 * Bug fixes and man page updates.
437 * --blocktimeout dur - Time out for reading block when using
438 --pipe. If it takes longer than dur to read a full block, use the
439 partial block read so far.
441 * Bug fixes and man page updates.
443 News about GNU Parallel:
445 * GNU Parallel course in Copenhagen
446 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
448 * GNU Parallel course in Århus
449 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
451 * GNU Parallel pour accélérer vos process sous Linux
452 https://www.yvonh.com/gnu-parallel-pour-accelerer-vos-process-sous-linux/
454 * How to copy a file to multiple directories in Linux
455 https://net2.com/how-to-copy-a-file-to-multiple-directories-in-linux/
457 * Running linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
462 * GNU Parallel course in Copenhagen
463 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
465 * GNU Parallel course in Århus
466 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
468 * GNU Parallel is used in
469 https://github.com/JeffersonLab/rfw_tsf_extractor
471 * Bug fixes and man page updates.
476 * GNU Parallel was presented at Driving IT. Slides:
477 cloud.prosa.dk/s/drivingit
479 * Restarting supervisord processes in parallel
480 https://blog.naderman.de/2019/11/14/restarting-supervisord-processes-in-parallel/
482 * Using GNU Parallel to Create Archives Faster
483 https://www.reddit.com/r/DataHoarder/comments/dsgmhc/parallel_archiving_techniques/
485 * Bug fixes and man page updates.
490 * --tee will use --output-error=warn-nopipe if supported by tee.
492 * GNU Parallel will be presented at Driving IT 2019:
493 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
495 * UMN Duluth: Job parallelization with task arrays and GNU parallel
496 https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
498 * Genome updater uses GNU Parallel
499 https://github.com/pirovc/genome_updater
501 * Using GNU-Parallel for bioinformatics
502 https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
504 * Speeding up PostgreSQL ETL pipeline with the help of GODS
505 https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
507 * Runing linux commands in parallel
508 https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
510 * Research Computing University of Colorado Boulder contains an intro
512 https://readthedocs.org/projects/curc/downloads/pdf/latest/
514 * 如何使用Parallel在Shell中并行执行命令
515 https://www.myfreax.com/gnu-parallel/
517 * 如何测试 Amazon Elastic File System
518 https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
520 * Bug fixes and man page updates.
525 * --nice is now inherited by the nice level that GNU Parallel is
526 started at. So 'nice -n10 parallel' will also cause remote jobs to
527 be run at nice level 10.
529 * --delay is now accurate to within 10 ms
531 * GNU Parallel will be presented at Driving IT 2019:
532 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
534 * Greenland Ice Sheet solid ice discharge from 1986 through 2017
535 https://www.earth-syst-sci-data.net/11/769/2019/essd-11-769-2019.pdf
537 * App Center Cloud Build Machines > Installed Software > Utilities
538 https://docs.microsoft.com/en-us/appcenter/build/software
540 * Curryfinger - SNI & Host header spoofing utility
541 https://dualuse.io/blog/curryfinger/
544 https://wiki.cac.washington.edu/display/hyakusers/Hyak+parallel-sql
546 * A meditation on analysing data with Perl in parallel using GNU Parallel
547 https://www.reddit.com/r/perl/comments/cyo2qc/a_meditation_on_analysing_data_with_perl_in/
549 * Accélérer ses tâches avec GNU Parallel et les lots de tâches (UL)
550 https://www.eventbrite.ca/e/inscription-accelerer-ses-taches-avec-gnu-parallel-et-les-lots-de-taches-ul-71412840729
552 * RMACC Summit GNU Parallel
553 https://curc.readthedocs.io/en/latest/software/GNUParallel.html
555 * Introducing Parallel into Shell
556 https://petelawson.com/post/parallel-in-shell/
558 * Linux Productivity Tools
559 https://www.usenix.org/conference/lisa19/presentation/maheshwari
561 * Gnu/parallel + Nfs 实现共享文件网络的并发计算等操作
562 http://atomicer.cn/2018/01/18/gnu-parallel-nfs-%E5%AE%9E%E7%8E%B0%E5%85%B1%E4%BA%AB%E6%96%87%E4%BB%B6%E7%BD%91%E7%BB%9C%E7%9A%84%E5%B9%B6%E5%8F%91%E8%AE%A1%E7%AE%97%E7%AD%89%E6%93%8D%E4%BD%9C/#more
564 * Bug fixes and man page updates.
569 * GNU Parallel will be presented at Driving IT 2019:
570 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it#beskrivelse
572 * Linux Productivity Tools
573 https://www.usenix.org/conference/lisa19/presentation/maheshwari
575 * Improve your reconnaissance performance by using GNU Parallel
576 https://mailchi.mp/3f46ceb46357/improve-your-reconnaissance-performance-by-using-gnu-parallel
578 * Paralel İşler / İşlemler / Programlar Bash’de Nasıl Çalıştırılır?
579 https://kaleinfo.com/2019/07/29/paralel-isler-islemler-programlar-bashde-nasil-calistirilir-2/
581 * Use POLYBAR to change WALLPAPER with GNU Parallel
582 https://www.youtube.com/watch?v=rjYg-b_eiRU
584 * Finding the Balance Between Speed & Accuracy During an Internet-wide
586 https://captmeelo.com/pentest/2019/07/29/port-scanning.html
588 * GNU Parallel Ryugu released
589 https://linuxreviews.org/GNU_Parallel_Ryugu_released
591 * CO2017 - CW1 - Operating Systems & Networks - Shell scripting
592 http://www.7daixie.com/2019071646302396.html
594 * Bug fixes and man page updates.
599 * {= uq; =} causes the replacement string to be unquoted. Example:
600 parallel echo '{=uq;=}.jpg' ::: '*'
602 * --tagstring {=...=} is now evaluated for each line with --linebuffer.
604 * Use -J ./profile to read a profile in current dir.
606 * Speedup of startup by 40%: Find the parent shell differently on
607 GNU/Linux, cache information about the CPU and which setpgrp method
608 to use to make GNU Parallel start 40% faster.
610 * $PARALLEL_SSHLOGIN can be used in the command line.
612 * Occasionally sane: Simple usage of GNU parallel
613 https://vfoley.xyz/parallel/
615 * How to run multiple bash scripts in parallel
616 https://techieroop.com/how-to-run-multiple-bash-scripts-in-parallel/
618 * Announcing Oracle Solaris 11.4 SRU10
619 https://blogs.oracle.com/solaris/announcing-oracle-solaris-114-sru10
621 * Руководство по использованию GNU Parallel https://zalinux.ru/?p=2623
623 * Bug fixes and man page updates.
628 * --shard can now take a column name and optionally a perl
629 expression. Similar to --group-by and replacement strings.
631 * Using AWK and R to parse 25tb
632 https://livefreeordichotomize.com/2019/06/04/using_awk_and_r_to_parse_25tb/
634 * Parallel and Visual testing with Behat
635 http://parallelandvisualtestingwithbehat.blogspot.com/p/blog-page.html
637 * 维基百科,自由的百科全书https://zh.wikipedia.org/wiki/GNU_parallel
639 * Bug fixes and man page updates.
644 * --group-by groups lines depending on value of a column. The value
647 * How to compress (bzip / gzip) a very large text quickly?
648 https://medium.com/@gchandra/how-to-compress-bzip-gzip-a-very-large-text-quickly-27c11f4c6681
650 * Simple tutorial to install & use GNU Parallel
651 https://medium.com/@gchandra/simple-tutorial-to-install-use-gnu-parallel-79251120d618
653 * Introducing Parallel into Shell
654 https://petelawson.com/post/parallel-in-shell/
656 * Bug fixes and man page updates.
661 * Invitation to the 10 years anniversary next year.
663 * Bug fixes and man page updates.
668 * SIGTERM is changed to SIGHUP, so sending SIGHUP will make GNU
669 Parallel start no more jobs, but wait for running jobs to finish.
671 * SIGTERM SIGTERM is changed to SIGTERM, so sending SIGTERM will make
672 GNU Parallel kill all running jobs.
674 * GNU Parallel now includes a cheat sheet: parallel_cheat.pdf
676 * High Throughput Computing on RMACC Summit and Beyond
677 https://calendar.colorado.edu/event/high_throughput_computing_on_rmacc_summit_and_beyond#.XH2NBhB7mV4
679 * GNU Parallel Cheat Sheet by cpriest
680 https://www.cheatography.com/cpriest/cheat-sheets/gnu-parallel/
682 * Use Multiple CPU Cores(Parallelize) with Single Threaded Linux
684 http://xensoft.com/use-multiple-cpu-cores-parallelize-with-single-threaded-linux-commands/
686 * Bug fixes and man page updates.
691 * --shard makes it possible to send input to a the same jobslot based
692 on the value in one column of the input. It is similar to sharding
695 * --shellquote --shellquote will shell quote the input twice.
697 * GNU Parallel is available in Termux
698 https://github.com/termux/termux-packages/tree/master/packages/parallel
700 * Linux, command line & MetaCentrum
701 https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf
703 * How to supercharge your bash workflows with GNU parallel
704 https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141
706 * GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI
708 * Parallelizing Freesurfer blog.cogneurostats.com/?p=148
710 * FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw
712 * FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/
714 * Come ridimensionare 10k foto con la riga di comando
715 https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
717 * 并行处理 – Gnu Parallel:嵌套并行
718 https://codeday.me/bug/20190122/552902.html
720 * シェルスクリプトでコマンドを並列実行する方法
721 https://www.kwbtblog.com/entry/2019/01/12/020423
723 * Bug fixes and man page updates.
728 * 'env_parallel --end-session' makes it possible to nest 'env_parallel
731 * Using GNU Parallel in pentesting https://youtu.be/mZ0OUJmkIlA?t=873
733 * Supercomputer Workshop: Feb 1&7
734 http://www.ece.unm.edu/featured-students/supercomputer-workshop-feb-17.html
736 * Bug fixes and man page updates.
741 * Better /proc/cpuinfo parser.
743 * Simpler job scheduling flow.
745 * MPGI Workshop: Job Parallelization with Task Arrays and GNU Parallel
746 https://www.msi.umn.edu/tutorials/mpgi-workshop-module-4
748 * CONCOCT uses GNU Parallel
749 https://media.readthedocs.org/pdf/concoct/latest/concoct.pdf
751 * If you use SLURM read
752 https://wiki.hpc.uconn.edu/index.php/Advanced_SLURM
755 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
757 * Bug fixes and man page updates.
762 * Experimental simpler job flow control.
764 * 時間がかかるコマンドを GNU parallel で 並列実行する
765 https://qiita.com//grohiro/items/4db3fa951a4778c5c479
767 * Bug fixes and man page updates.
772 * env_parallel.fish: --session support (alpha quality)
774 * GNU Parallel was cited in: High-throughput sequencing of murine
775 immunoglobulin heavy chain repertoires using single side unique
776 molecular identifiers on an Ion Torrent PGM
777 https://doi.org/10.18632/oncotarget.25493
779 * GNU parallel in Japanese Wikipedia
780 https://ja.wikipedia.org/wiki/GNU_parallel
782 * Outils de paramétrisation des tâches: lots de tâches, GNU Parallel
783 https://www.eventbrite.ca/e/inscription-outils-de-parametrisation-des-taches-lots-de-taches-gnu-parallel-et-bqtools-midi-conference-de-50271076142
785 * Bug fixes and man page updates.
790 * Minix is supported again.
792 * Updated graph showing GNU Parallel's overhead per job for each
793 version. https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
795 * Intro to Computing at CARC includes introduction to GNU Parallel
796 http://carc.unm.edu/education--training/workshops-and-seminars.html
798 * Fast-GBS uses GNU Parallel https://bitbucket.org/jerlar73/fast-gbs/wiki/Home
800 * Belgium at 10 m resolution in July 2018 http://www.cesbio.ups-tlse.fr/multitemp/?p=14116
802 * Bug fixes and man page updates.
807 * parset sets exit code.
809 * How to install GNU Parallel
810 https://www.techrepublic.com/videos/how-to-install-gnu-parallel/
812 * Bug fixes and man page updates.
817 * The quoting engine has been changed. Instead of using \-quoting GNU
818 Parallel now uses '-quoting in bash/ash/dash/ksh. This should
819 improve compatibility with different locales. This is a big change
820 causing this release to be alpha quality.
822 * The CPU calculation has changed. By default GNU Parallel uses the
823 number of CPU threads as the number of CPUs. This can be changed to
824 the number of CPU cores or number of CPU sockets with
825 --use-cores-instead-of-threads or --use-sockets-instead-of-threads.
827 * The detected number of sockets, cores, and threads can be shown with
828 --number-of-sockets, --number-of-cores, and --number-of-threads.
830 * env_parallel now support mksh using env_parallel.mksh.
832 * GNU Parallel is distributed as part of Snippy
833 https://github.com/tseemann/snippy
835 * GNU Parallel: Ejecutar comandos simultáneamente en Linux
836 https://esgeeks.com/gnu-parallel-ejecutar-comandos-simultaneo-linux/
838 * Parallel download genomic data with GNU-Parallel
839 https://digibio.blogspot.com/search/label/GNU-Parallel
841 * Bug fixes and man page updates.
846 * Deal better with multibyte chars by forcing LC_ALL=C.
848 * GNU Parallel was introduced in Pincount Podcast:
849 https://pincountpodcast.com/episodes/29.html
851 * GNU Parallel was shown on Danish national news for 1.7 seconds: dr.dk
853 * How to run Linux commands simultaneously with GNU Parallel
854 https://www.techrepublic.com/article/how-to-run-commands-simultaneously-with-gnu-parallel/#ftag=RSS56d97e7
856 * Easy parallelization with GNU parallel
857 http://mpharrigan.com/2016/08/02/parallel.html
859 * GNU Parallel for mutlithreaded tasks
860 http://slhogle.github.io/2016/gnu-parallel/
862 * A GNU Parallel Clustering Demo
863 https://www.crowdsupply.com/ground-electronics/circumference/updates/a-gnu-parallel-clustering-demo
865 * 使用 GNU Parallel 提高 Linux 命令行执行效率
866 https://linux.cn/article-9718-1.html
868 * Ejecutando tareas desde consola simultáneamente con GNU Parallel
869 https://poesiabinaria.net/2018/06/ejecutando-tareas-desde-consola-simultaneamente-gnu-parallel/
871 * Cómo ejecutar varias tareas simultáneamente en el terminal con GNU
873 https://www.ubuntizando.com/como-ejecutar-varias-tareas-simultaneamente-en-el-terminal-con-gnu-parallel/
875 * GNU Parallel 활용 가이드 http://genoglobe.kr/kribb/gnu_parallel
877 * Bug fixes and man page updates.
882 * --tty allows for more programs accessing /dev/tty in parallel. Some
883 programs require tty access without using it.
885 * env_parallel --session will record names in current environment in
886 $PARALLEL_IGNORED_NAMES and exit. It is only used with env_parallel,
887 and can work like --record-env but in a single session.
889 * 35 day course: Linux shell scripting and text processing for big
890 data https://comquest.in/training
892 * How To Use Your Entire CPU In Bash With Parallel
893 https://bash-prompt.net/guides/parallell-bash/
895 * An easy way to run parallel jobs on Stampede2
896 https://blog.uta.edu/xus/2017/09/29/an-easy-way-to-run-parallel-jobs-on-stampede2/
898 * Get more done at the Linux command line with GNU Parallel
899 https://opensource.com/article/18/5/gnu-parallel
901 * Save Time with Modern Search Techniques
902 https://www.sans.org/summit-archives/file/summit-archive-1524582079.pdf
904 * GNU Parallel: haz más cosas simultáneamente en el terminal
905 https://blog.desdelinux.net/gnu-parallel-haz-mas-cosas-simultaneamente-en-el-terminal/
907 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
908 https://www.slideshare.net/koji_matsuda/gnu-parallel
910 * Bug fixes and man page updates.
915 * --csv makes GNU Parallel parse the input sources as CSV. When used
916 with --pipe it only passes full CSV-records.
918 * Time in --bar is printed as 1d02h03m04s.
920 * Optimization of --tee: It spawns a process less per value.
922 * The GNU Parallel 2018 book is now available:
923 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
925 * Modern pentest tricks for faster, wider, greater engagement (15)
926 https://conference.hitb.org/hitbsecconf2018ams/materials/D1%20COMMSEC%20-%20Thomas%20Debize%20-%20Modern%20Pentest%20Tricks%20for%20Faster,%20Wider,%20Greater%20Engagements.pdf
928 * Running many serial jobs efficiently
929 https://userinfo.surfsara.nl/documentation/running-many-serial-jobs-efficiently
931 * GNU Parallel: как сохранить результаты нескольких команд для
932 переменной? http://fliplinux.com/gnu-parallel-6.html
934 * Running Multiple Commands in Parallel on a GNU Linux
935 https://www.youtube.com/watch?v=sHpTywpb4_4
937 * Klaatu covers the documentation of GNU parallel in episode 12x15
938 http://gnuworldorder.info/
940 * Bug fixes and man page updates.
945 * niceload -p can now take multiple pids separated by comma
947 * --timeout gives a warning when killing processes
949 * --embed now uses the same code for all supported shells
951 * --delay can now take arguments like 1h12m07s
953 * Parallel. Straight from your command line
954 https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee
956 * GNU Parallel was used in POAP-Parallelized Open Babel & Autodock
957 suite Pipeline https://github.com/inpacdb/POAP
959 * Pi Cluster Parallel Script First Fire
960 https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/
962 * How to Restore MySQL Logical Backup at Maximum Speed
963 https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/
965 * Bug fixes and man page updates.
970 * --embed makes it possible to embed GNU parallel in a shell
971 script. This is useful if you need to distribute your script to
972 someone who does not want to install GNU parallel.
974 * Parallelize Your Large Batches of Small Jobs
975 https://amito.me/2018/02/Parallelize-Your-Large-Batches-of-Small-Jobs/
977 * Klaatu expounds upon xargs and talks GNU parallel in episode 12x6
978 http://gnuworldorder.info/
980 * How to use parallel to speed up your work
981 https://mike42.me/blog/how-to-use-parallel-to-speed-up-your-work
983 * Transient compute clustering with GNU Parallel and sshfs
984 https://dennismungai.wordpress.com/2018/02/06/transient-compute-clustering-with-gnu-parallel-and-sshfs/
986 * Useful Examples of ffmpeg and GNU parallel on the command-line
987 https://dennismungai.wordpress.com/2018/02/06/useful-examples-of-ffmpeg-and-gnu-parallel-on-the-command-line/
989 * Data Science at the Command Line (Chapter 8.3)
990 https://www.datascienceatthecommandline.com/
992 * Bug fixes and man page updates.
997 * bash / 병렬 https://code.i-harness.com/ko/docs/bash/2a1a
999 * 15分钟神器gnu parallel 入门观止
1000 http://www.ezilin.com/2018/01/15gnu-parallel.html
1002 * How To Run Multiple Commands In Parallel on Linux
1003 https://www.slashroot.in/how-run-multiple-commands-parallel-linux
1005 * Bug fixes and man page updates.
1010 * env_parset for ash, dash, ksh, sh, zsh
1012 * Automatically create hostgroups if argument ends in @sshlogin
1014 * Tips for running jobs on your VM
1015 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1017 * Node-local scheduling
1018 https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
1020 * GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
1022 * GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
1024 * Using GNU Parallel
1025 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1027 * Bug fixes and man page updates.
1032 * Using GNU Parallel to speed up Google Cloud Infrastructure
1034 https://medium.com/@pczarkowski/using-gnu-parallel-to-speed-up-google-cloud-infrastructure-management-53e5c555ec05
1036 * What is gnu parallel
1037 http://wiki.chpc.ac.za/howto:bioinformatics:gnu-parallel
1039 * Parallel, Scripts, Clusters, & Easy Use
1040 https://chiefio.wordpress.com/2017/11/10/parallel-scripts-clusters-easy-use/
1042 * Bug fixes and man page updates.
1047 * Initial support for XDG Base Directory $XDG_* environment variables.
1049 * Validating half a million TIFF files. Part
1051 https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1053 * Turing data science class: Cluster computing
1054 https://www.turing.ac.uk/events/masterclass-cluster-computing/
1056 * Butlin:Unix for Bioinformatics - advanced tutorial
1057 https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
1059 * พยายามใช้ CPU ให้ครบทุก CORE
1060 https://veer66.wordpress.com/2017/09/02/use-multi-core/
1062 * Examples on using GNU Parallel
1063 https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
1065 * Bug fixes and man page updates.
1070 * Use '--limit myprog' to make a dynamic job limit. Just return 0 to
1071 spawn another job, 1 to not spawn another job, and 2 to kill the
1074 * PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
1077 * Download all of humble bundle books in parallel
1078 https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel
1080 * Bug fixes and man page updates.
1085 * --line-buffer no longer uses tempfiles. This is faster and makes it
1086 possible for a single process to output more data than there is free
1089 * Vote for GNU Parallel's community ads on
1090 http://meta.unix.stackexchange.com/a/4356/2972
1091 http://meta.askubuntu.com/a/16750/22307
1092 http://meta.serverfault.com/a/9040/45704
1094 * Edit images with GNU Parallel and ImageMagick
1095 https://fedoramagazine.org/edit-images-parallel-imagemagick/
1097 * Running Bash Commands in Parallel
1098 https://dzone.com/articles/running-bash-commands-in-parallel-1
1100 * Today I Learned: GNU parallel, plate tectonics
1101 https://medium.com/@nornagon/today-i-learned-gnu-parallel-plate-tectonics-9fcf24045e63
1103 * GNU Parallel Tutorial
1104 https://www.upf.edu/web/sct-sit/gnu-parallel-tutorial
1106 * Validating half a million TIFF files
1107 http://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1109 * Blender and GNU Parallel
1110 https://www.blendernation.com/2017/08/16/blender-gnu-parallel/
1112 * Quick Introduction to GNU Parallel
1113 https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1115 * A simple distributed animation render example using GNU Parallel
1116 https://gitlab.com/skororu/scripts
1118 * Do stuff on things, in parallel
1119 http://blogs.fluidinfo.com/terry/2017/08/05/do-stuff-on-things-in-parallel/
1121 * Bash And GNU Parallel NGS Bidniz
1122 http://ino.pm/outreach/presentations/2014/03/genomics-wranglers/index.html
1124 * Using for loop vs Gnu parallel for BLAST
1125 http://www.ettemalab.org/using-for-loop-vs-gnu-parallel-for-blast/
1127 * 并行rsync https://gxnotes.com/article/175866.html
1129 * Bug fixes and man page updates.
1134 * Vote for GNU Parallel's community ads on
1135 http://meta.unix.stackexchange.com/a/4356/2972
1136 http://meta.askubuntu.com/a/16750/22307
1137 http://meta.serverfault.com/a/9040/45704
1139 * GNU Parallel was cited in: Hayabusa: Simple and Fast Full-Text
1140 Search Engine for Massive System Log Data
1141 http://dl.acm.org/citation.cfm?id=3095788
1143 * コマンドの並列化を行える『GNU parallel』の個人的使い方まとめ
1144 https://orebibou.com/2017/07/%E3%82%B3%E3%83%9E%E3%83%B3%E3%83%89%E3%81%AE%E4%B8%A6%E5%88%97%E5%8C%96%E3%82%92%E8%A1%8C%E3%81%88%E3%82%8B%E3%80%8Egnu-parallel%E3%80%8F%E3%81%AE%E5%80%8B%E4%BA%BA%E7%9A%84%E4%BD%BF%E3%81%84/
1146 * How to play and play with thousands of digitized 78rpm records
1147 https://blog.archive.org/2017/07/10/how-to-play-and-play-with-78rpm-record-transfers/
1149 * 并行一个for循环 https://gxnotes.com/article/130363.html
1151 * RFC 8142: GeoJSON Text Sequences
1152 https://sgillies.net/2017/05/18/rfc-8142-geojson-text-sequences.html
1154 * Git auto fetch script I run every day
1155 https://lukas.zapletalovi.com/2017/07/git-auto-fetch-script-i-run-every-day.html
1157 * cores, cpus and threads
1158 http://crazyhottommy.blogspot.de/2017/07/cores-cpus-and-threads.html
1160 * Bug fixes and man page updates.
1165 * The command line can now contain \257 (Macron) or UTF characters
1168 * Vote for GNU Parallel's community ads on
1169 http://meta.unix.stackexchange.com/a/4356/2972
1170 http://meta.askubuntu.com/a/16750/22307
1171 http://meta.serverfault.com/a/9040/45704
1173 * Graph for overhead for 1000 jobs has been updated. It remains
1174 steadily at 3.5 ms per job on a 1.7 GHz machine
1175 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1177 * GNU Parallel was cited in: The topology of the directed clique
1178 complex as a network invariant
1179 https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
1181 * GNU Parallel was cited in: Improving Optical Character Recognition
1182 of Finnish Historical Newspapers with a Combination of Fraktur &
1183 Antiqua Models and Image
1184 http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
1186 * GNU Parallel was cited in: Parallel Execution of Structural Mechanic
1187 Tasks with Use of Small Supercomputers
1188 http://www.sciencedirect.com/science/article/pii/S1877705817324815
1190 * GNU Parallel was cited in: Integration of a Multilingual Preordering
1191 Component into a Commercial SMT Platform
1192 https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
1194 * Tips For Running Jobs On Your VM
1195 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1197 * Speed up ML model development with GNU Parallel
1198 https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
1200 * Parallelizing a Python Function for the Extremely Lazy
1201 http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
1204 http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
1206 * Bug fixes and man page updates.
1211 * --timeout can now use s=second,m=minute,h=hour,d=day.
1213 * --dr is now an alias for --dry-run.
1215 * Vote for GNU Parallel's community ads on
1216 http://meta.unix.stackexchange.com/a/4356/2972
1217 http://meta.askubuntu.com/a/16750/22307
1218 http://meta.serverfault.com/a/9040/45704
1220 * GNU Parallel was cited in: Feature Detection in Visual Cortex during
1221 Different Functional States
1222 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
1224 * GNU Parallel was cited in: From genotype to phenotype: inferring
1225 relationships between microbial traits and genomic components
1226 https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
1228 * GNU Parallel was cited in: Designing fecal microbiota transplant
1229 trials that account for differences in donor stool efficacy
1230 http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
1232 * GNU Parallel was cited in: Assessing the predictability of
1233 anharmonic vibrational modes at the example of hydroxyl groups - ad
1234 hoc construction of localised modes and the influence of structural
1235 solute–solvent motifs
1236 http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
1238 * GNU Parallel was cited in: Mapping Environmental Influences on
1240 ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
1242 * GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
1243 Glass Transition in One Dimension
1244 https://arxiv.org/pdf/1704.02257.pdf
1246 * GNU Parallel was cited in: Online Automatic Post-editing for MT in a
1247 Multi-Domain Translation Environment
1248 https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
1250 * GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
1251 moderate-resolution reflective solar bands against MODIS Aqua over
1253 http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
1255 * GNU Parallel was cited in: Scattering Networks: Efficient 2D
1256 Implementation And Application To Melanoma Classification
1257 http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
1259 * GNU Parallel was cited in: Genome-scale detection of positive
1260 selection in 9 primates predicts human-virus evolutionary conflicts
1261 http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
1263 * GNU Parallel is used in: Creates a speech dataset for deep learning
1264 https://github.com/jupiter126/Create_Speech_Dataset
1266 * GNU Parallel is used in: Parse and process the demixing secrets
1267 dataset (DSD100) https://github.com/faroit/dsdtools
1269 * First glance at the gnu parallel utility
1270 https://ibiscybernetics.com/blog/2017-04-05.html
1272 * Installing parallel from source
1273 https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
1275 * How to run command or code in parallel in bash shell under Linux or
1277 https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
1279 * Parallel Serial Jobs Using GNU Parallel
1280 http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
1282 * GNU Parallel or How to list millions of S3 objects
1283 https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
1285 * Which Is the Best Tool for Copying a Large Directory Tree Locally?
1286 http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
1288 * Bug fixes and man page updates.
1293 * --halt supports done in addition to success and fail.
1295 * parset will set variables in parallel in Bash.
1297 * Perl 5.6 on Irix is no longer supported.
1299 * Vote for GNU Parallel's community ads on
1300 http://meta.unix.stackexchange.com/a/4356/2972
1301 http://meta.askubuntu.com/a/16750/22307
1302 http://meta.serverfault.com/a/9040/45704
1304 * GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
1305 from transcriptomic data using MapReduce
1306 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
1308 * GNU Parallel was cited in: StrAuto: automation and parallelization
1309 of STRUCTURE analysis
1310 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
1312 * GNU Parallel was cited in: Trespassing the Boundaries: Labeling
1313 Temporal Bounds for Object Interactions in Egocentric Video
1314 https://128.84.21.199/pdf/1703.09026.pdf
1316 * GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
1318 * Using GNU Parallel
1319 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1321 * Find and xargs and parallel
1322 http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
1324 * Quick Introduction to GNU Parallel
1325 https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1327 * Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
1329 * Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
1331 * Bug fixes and man page updates.
1336 * --rpl can now take arguments by adding '(regexp)' in the replacement
1339 * Vote for GNU Parallel's community ads on
1340 http://meta.unix.stackexchange.com/a/4356/2972
1341 http://meta.askubuntu.com/a/16750/22307
1342 http://meta.serverfault.com/a/9040/45704
1344 * GNU Parallel was cited in: shmlast: An improved implementation of
1345 Conditional Reciprocal Best Hits with LAST and Python
1346 https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
1348 * GNU Parallel was cited in: Prediction of relativistic electron flux
1349 in the Earth’s outer radiation belt at geostationary orbit by
1351 https://link.springer.com/article/10.1134/S0016793217010108
1353 * GNU Parallel was cited in: Higher likelihood of multiple bit-flips
1354 due to neutron-induced strikes on logic gates
1355 https://arxiv.org/pdf/1612.08239.pdf
1357 * GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
1358 Calculation of Hybrid Classical and Quantum Free Energies
1359 http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
1361 * GNU Parallel was cited in: Learning string distance with smoothing
1362 for OCR spelling correction
1363 https://link.springer.com/article/10.1007/s11042-016-4185-5
1365 * GNU Parallel was cited in: The Breakdown of String Perturbation
1366 Theory for Many External Particles
1367 https://arxiv.org/pdf/1611.08003.pdf
1369 * GNU Parallel was cited in: Operations Research Applications in
1371 https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
1373 * GNU Parallel was cited in: Parallel Computing: GNU Parallel
1374 http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
1376 * Stig Sandbeck Mathisen: Change All The Passwords (Again)
1377 http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
1379 * Trabalhando como Paralelismo no Bash usando o GNU Parallel
1380 http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
1382 * GNU parallel と SQL*Loader 組み合わせ実行例
1383 https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
1385 * Bug fixes and man page updates.
1390 * env_parallel now supports /bin/sh, ash, dash.
1392 * --tee will pipe all data to all jobs. Used with --pipe/--pipepart
1393 and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
1394 {} | wc -l' ::: {0..9}
1396 * If --results {replstr} ends in /: save in dir. Otherwise save as
1397 file. Example: parallel --results {} echo {} ::: a b c
1399 * Vote for GNU Parallel's community ads on
1400 http://meta.unix.stackexchange.com/a/4356/2972
1401 http://meta.askubuntu.com/a/16750/22307
1402 http://meta.serverfault.com/a/9040/45704
1404 * GNU Parallel was cited in: Low-delay forwarding with multiple
1405 candidates for VANETs using multi-criteria decision making
1406 http://ieeexplore.ieee.org/document/7835961/
1408 * GNU Parallel was cited in: An Integrated Simulator and Dataset that
1409 Combines Grasping and Vision for Deep Learning
1410 https://arxiv.org/pdf/1702.02103.pdf
1412 * GNU Parallel was cited in: A Bayesian model selection approach for
1413 identifying differentially expressed transcripts from RNA sequencing
1414 data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
1416 * GNU Parallel was cited in: The impact of copy number variation on
1417 gout, and the apple genome
1418 https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
1420 * GNU Parallel was cited in: Reaction rates for reaction-diffusion
1421 kinetics on unstructured meshes
1422 http://aip.scitation.org/doi/10.1063/1.4975167
1424 * GNU Parallel was cited in: Modeling prediction error improves power
1425 of transcriptome-wide association studies
1426 http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
1428 * GNU Parallel was cited in: Proper experimental design requires
1429 randomization/balancing of molecular ecology experiments
1430 http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
1432 * GNU Parallel was cited in: Experiment-based thermal micromagnetic
1433 simulations of the magnetization reversal for ns-range clocked
1435 http://aip.scitation.org/doi/full/10.1063/1.4974021
1437 * GNU Parallel was cited in: The University of Edinburgh’s systems
1438 submission to the MT task at IWSLT
1439 http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
1441 * Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
1443 * Job: DevOps Engineer/Senior Systems Administrator in New York, New
1445 http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
1447 * Training in GNU Parallel:
1448 https://www.carc.unm.edu/education-outreach/workshops--training/
1450 * Training in GNU Parallel:
1451 http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
1453 * Batch Convert Images from PNG to JPEG
1454 http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
1456 * Accelerating Oxford Nanopore Basecalling
1457 http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
1459 * parallel и imagemagick в loop на bash
1460 https://www.linux.org.ru/forum/development/13190247
1462 * Bug fixes and man page updates.
1472 * sql now uses a temporary credentials file for MySQL to avoid
1475 * --sqlmaster and --sqlworker have been reworked.
1477 * --sqlworker only reads from the DBURL: any command and any arguments
1480 * --sqlmaster +DBURL will append different commands to the DBURL and
1481 not erase the table.
1483 * If --results contain a replacement string, no tree structure with
1484 args will be generated.
1486 * --fg --tmux or --fg --tmuxpane will connect to the tmux.
1488 * GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
1489 Classification, and Measurement
1490 https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
1492 * GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
1493 Social and Solitary Wild Bees Detects Associations with Eukaryote
1494 Parasites and New Viruses
1495 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
1497 * GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
1498 of Metric Temporal Logic
1499 http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
1501 * 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
1503 * GNU Parallel as a queuing system:
1504 http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
1506 * AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
1508 http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
1509 and https://youtu.be/PlTuJx4VnGw?t=30m16s
1511 * Bug fixes and man page updates.
1516 * --results foo.csv will save output as a CSV-file. Can be directly
1517 imported into R or LibreCalc.
1519 * When using --pipepart a negative --block-size is not interpreted as
1520 a block size but as the number of blocks each jobslot should have.
1522 * --sqlmaster/--sqlandworker will append jobs to the DBURL if the
1523 DBURL is prepended with +.
1525 * GNU Parallel was cited in: A cloud-based workflow to quantify
1526 transcript-expression levels in public cancer compendia
1527 http://www.nature.com/articles/srep39259
1529 * GNU Parallel was cited in: Determination of crystal structures of
1530 proteins of unknown identity using a marathon molecular replacement
1531 procedure: Structure of Stenotrophomonas maltophilia
1532 phosphate-binding protein
1533 https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
1535 * GNU Parallel was cited in: Large-scale benchmarking reveals false
1536 discoveries and count transformation sensitivity in 16S rRNA gene
1537 amplicon data analysis methods used in microbiome studies
1538 http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
1540 * GNU Parallel was cited in: Decomposing Images into Layers via
1542 https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
1544 * Transient compute clustering with GNU Parallel and sshfs
1545 https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
1547 * 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
1548 http://www.tecmint.com/linux-image-conversion-tools/
1550 * All's Fair in Love and Distributed Storage
1551 http://cohesity.com/blog/alls-fair-love-distributed-storage/
1553 * How can I use GNU Parallel to run a lot of commands in parallel
1554 https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
1556 * 정해영의 블로그 - JEONG Haeyoung's blog
1557 http://blog.genoglobe.com/2016/11/gnu-parallel.html
1559 * 在Linux下将PNG和JPG批量互转的四种方法
1560 http://os.51cto.com/art/201612/524182.htm
1562 * Running in parallel http://tomkimpson.com/howto/gnuparallel/
1564 * Taco Bell Parallel Programming
1565 https://giorgos.sealabs.net/taco-bell-parallel-programming.html
1567 * Bug fixes and man page updates.
1572 * --record-env can now be used with env_parallel for bash, ksh, pdksh,
1575 * GNU Parallel was cited in: An improved implementation of Conditional
1576 Reciprocal Best Hits with LAST and Python
1577 https://pypi.python.org/pypi/shmlast/1.0.3
1579 * GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
1581 http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
1583 * GNU/Parallel – Run multiple commands simultaneously
1584 https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
1586 * Tutorial: Parallel web scraping with CasperJS and GNU Parallel
1587 http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
1589 * Bug fixes and man page updates.
1594 * First command no longer gets stdin as it causes unpredictable issues.
1596 * GNU Parallel was cited in: Efficiently parallelized modeling of
1597 tightly focused, large bandwidth laser pulses
1598 https://arxiv.org/pdf/1609.08146v1.pdf
1600 * How to crunch lots of geodata in parallel
1601 http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
1603 * GNU parallel is my new toaster
1604 http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
1606 * Bug fixes and man page updates.
1611 * parcat - cat files or fifos in parallel
1613 * GNU Parallel was cited in: Velocity: A Netflow Based Optimized
1615 https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
1617 * GNU Parallel was cited in: Viral deep sequencing needs an adaptive
1618 approach: IRMA, the iterative refinement meta-assembler
1619 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
1621 * Using GNU Parallel and ImageMagick for Conversions
1622 https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
1624 * Training in GNU Parallel
1625 http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
1627 * Chown Ceph OSD data directory using GNU Parallel
1628 http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
1630 * FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
1632 * dDocent: A guide to ddRAD sequencing
1633 https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
1635 * SOFTWARE GNU Parallel
1636 http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
1638 * Bug fixes and man page updates.
1643 * --tmuxpane opens jobs in panes in tmux. Useful if you want to
1644 monitor progress of less than 100 simultaneous jobs.
1646 * --linebuffer now treats \r as line ending, too.
1648 * Perl changes forces use of floats to be given with leading zero, so
1651 * --xapply renamed to --link.
1653 * Support for pdksh will fade until someone packages it for Ubuntu 16.
1655 * GNU Parallel was cited in: Exome sequencing of geographically
1656 diverse barley landraces and wild relatives gives insights into
1657 environmental adaptation
1658 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
1660 * GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
1661 Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
1663 * Easy parallelization with GNU parallel
1664 http://mpharrigan.com/2016/08/02/parallel.html
1666 * Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
1668 http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
1671 http://www.manitou-mail.org/blog/2016/07/parallel-import/
1673 * Large file batch processing using NodeJs and GNU Parallel
1674 http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
1676 * Bug fixes and man page updates.
1681 * env_parallel is now ready for wider testing. It is still beta
1684 * env_parallel is heavily modified for all shells and testing has been
1687 * Selectively choosing what to export using --env now works for
1688 env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
1690 * --round-robin now gives more work to a job that processes faster
1691 instead of same amount to all jobs.
1693 * --pipepart works on block devices on GNU/Linux.
1695 * GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
1696 Introns for Phylogenetics from High-Throughput Sequencing Reads
1697 Using Target Enrichment
1698 http://www.bioone.org/doi/full/10.3732/apps.1600016
1700 * GNU Parallel was cited in: StrAuto - Automation and Parallelization
1701 of STRUCTURE Analysis
1702 http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
1704 * GNU Parallel was cited in: Tools and techniques for computational
1706 http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
1708 * GNU Parallel was cited in: FlashPCA: fast sparse canonical
1709 correlation analysis of genomic data
1710 http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
1712 * GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
1713 Fine-tuning Query Expansion and Unification Strategies
1714 http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
1716 * GNU Parallel was cited in: The Evolution and Fate of
1717 Super-Chandrasekhar Mass White Dwarf Merger Remnants
1718 http://arxiv.org/pdf/1606.02300.pdf
1720 * GNU Parallel was cited in: Evaluation of Coastal Scatterometer
1722 https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
1724 * GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
1726 * The iconv slurp misfeature
1727 http://www.openfusion.net/linux/iconv_slurp_misfeature
1729 * แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
1731 * Bug fixes and man page updates.
1736 * $PATH can now be exported using --env PATH. Useful if GNU Parallel
1737 is not in your path on remote machines.
1739 * If --block is left out, --pipepart will use a block size that will
1740 result in 10 jobs per jobslot.
1742 * The cookie from 2016-01-04 was won by Morgan Rodgers on the
1743 2016-06-06 after 5 months.
1745 * Vote for GNU Parallel's community ad on
1746 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
1748 * GNU Parallel was cited in: Genotypic Resistance Tests Sequences
1749 Reveal the Role of Marginalized Populations in HIV-1 Transmission in
1750 Switzerland http://www.nature.com/articles/srep27580
1752 * GNU Parallel was cited in: A Deep-Learning Approach for Operation of
1753 an Automated Realtime Flare Forecast
1754 https://arxiv.org/pdf/1606.01587.pdf
1756 * Unix parallel: Populating all the USB sticks
1757 http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
1759 * GNU Parallel is a fantastic utility https://www.dray.be/parallel/
1761 * Combining a large number of VCF files
1762 https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
1764 * Useful Scraping Techniques
1765 http://blog.apps.npr.org/2016/06/17/scraping-tips.html
1767 * Tools of the trade
1768 http://onox.com.br/2015/05/tools-of-the-trade/#more-198
1770 * Armslist scraper https://github.com/nprapps/armslist-scraper/
1772 * Bug fixes and man page updates.
1777 * niceload --net pauses the program if the internet connection is
1780 * Vote for GNU Parallel's community ad on
1781 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
1783 * Updated speed comparison between versions
1784 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1786 * GNU Parallel was cited in: Improving computation efficiency by
1787 parallel programming
1788 http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
1790 * GNU Parallel was cited in: A supernova feedback implementation for
1791 the astrophysical simulation software Arepo
1792 https://arxiv.org/abs/1604.06071
1794 * GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
1795 resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
1797 * GNU Parallel was cited in: Host-pathogen co-evolution and the
1798 emergence of broadly neutralizing antibodies in chronic infections
1799 https://arxiv.org/abs/1512.06296
1801 * GNU Parallel was cited in: Pacific People, Metabolic Disease and
1802 Evolutionary Processes: a mitochondrial DNA study
1803 https://otago.ourarchive.ac.nz/handle/10523/6340
1805 * GNU Parallel was cited in: The effect of domain modeling on
1806 efficiency of planning: Lessons from the Nomystery domain
1807 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
1809 * GNU Parallel was cited in: Oops, my tests broke the build: An
1810 analysis of Travis CI builds with GitHub
1811 https://peerj.com/preprints/1984/
1813 * GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
1814 Distinct Set of Genomic Properties Over 40 Million Years of
1815 Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
1817 * GNU Parallel was cited in: An Empirical Comparison of Neural
1818 Architectures for Reinforcement Learning in Partially Observable
1820 http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
1822 * GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
1823 Management in Requester-wins Hardware Transactional Memory
1824 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
1826 * GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
1827 Mutation-Induced Stability Changes with Feature-Based Multiple
1829 http://www.sciencedirect.com/science/article/pii/S0022283616000310
1831 * GNU Parallel was cited in: A new orthology assessment method for
1832 phylogenomic data: Unrooted Phylogenetic Orthology
1833 http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
1834 https://github.com/ballesterus/UPhO
1836 * GNU Parallel was cited in: Distinctive Interest Point Selection for
1837 Efficient Near-duplicate Image Retrieval
1838 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
1840 * GNU Parallel was cited in: The Evolution of C Programming Practices:
1841 A Study of the Unix Operating System 1973–2015
1842 https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
1843 thumbnail graphs I have ever seen scattered all over the text)
1845 * GNU Parallel was cited in: Data processing pipeline for serial
1846 femtosecond crystallography at SACLA
1847 http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
1849 * GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
1850 Dynamics http://arxiv.org/pdf/1512.01460.pdf
1852 * GNU Parallel was cited in: Genomic legacy of the African cheetah,
1854 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
1856 * GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
1857 Characterization of IPv6 Network Security Policy
1858 http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
1860 * GNU Parallel was cited in: Comprehensive Annotation of the
1861 Parastagonospora nodorum Reference Genome Using Next-Generation
1862 Genomics, Transcriptomics and Proteogenomics
1863 http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
1865 * GNU Parallel was cited in: How attention influences perceptual
1866 decision making: Single-trial EEG correlates of drift-diffusion
1867 model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
1869 * GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
1870 Using High-Throughput Sequencing Reads
1871 http://repository.upenn.edu/edissertations/1460/
1873 * GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
1874 Processing with Associative Transducers
1875 http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
1877 * GNU Parallel was cited in: PVAIR: Partial Variable Assignment
1878 InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
1880 * GNU Parallel was cited in: Comparative Cladistics: Fossils,
1881 Morphological Data Partitions and Lost Branches in the Fossil Tree
1882 of Life http://opus.bath.ac.uk/43955/
1884 * GNU Parallel was cited in: Shannon: An Information-Optimal de
1885 NovoRNA-Seq Assembler
1886 http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
1888 * GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
1889 Estimation for Coastal Ocean Modeling
1890 https://repositories.lib.utexas.edu/handle/2152/32435
1892 * GNU Parallel was cited in: Computational Design of DNA-Binding
1894 http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
1896 * GNU Parallel was cited in: Reference genotype and exome data from an
1897 Australian Aboriginal population for health-based research
1898 http://www.nature.com/articles/sdata201623
1900 * GNU Parallel was cited in: Do aye-ayes echolocate?
1901 http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
1903 * GNU Parallel was cited in: Functional enrichments of disease
1904 variants across thousands of independent loci in eight diseases
1905 http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
1907 * GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
1908 microbial trait analyzer
1909 http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
1911 * GNU Parallel was mentioned in: Fast Playback Framework for Analysis
1912 of Ground-Based Doppler Radar Observations Using MapReduce
1914 http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
1916 * NCBI blast tutorial
1917 https://github.com/enormandeau/ncbi_blast_tutorial
1919 * Distributed Preservation Made Simple
1920 https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
1922 * Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
1924 * Bug fixes and man page updates.
1929 * :::+ and ::::+ work like ::: and :::: but links this input source to
1930 the previous input source in a --xapply fashion. Contrary to
1931 --xapply values do not wrap: The shortest input source determines
1934 * --line-buffer --keep-order now outputs continously from the oldest
1935 job still running. This is more what you would expect than the
1936 earlier behaviour where --keep-order had no effect with
1939 * env_parallel supports tcsh, csh, pdksh. In fish it now supports
1940 arrays. In csh/tcsh it now supports variables, aliases, and arrays
1941 with no special chars. In pdksh it supports aliases, functions,
1942 variables, and arrays.
1944 * Function exporting on Mac OS X works around old Bash version.
1946 * Better CPU detection on OpenIndiana.
1948 * GNU Parallel was cited in: Automatic Methods for Assisted
1950 https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
1952 * GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
1953 for Natural SUSY with a R-Sneutrino LSP
1954 http://arxiv.org/pdf/1603.06130.pdf
1956 * GNU Parallel was cited in: An Operational Radiometric Landsat
1957 Preprocessing Framework for Large-Area Time Series Applications
1958 https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
1960 * A basic demo of how GNU Parallel can speed up execution of commands
1961 https://www.youtube.com/watch?v=kl8LO2jcvMc
1963 * qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
1965 * FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
1967 * Parallel Processing with Catmandu
1968 https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
1971 http://staypython.blogspot.dk/2016/04/gnu-parallel.html
1973 * Bug fixes and man page updates.
1978 * env_parallel is a function that exports the environment (functions,
1979 aliases, variables, and arrays) to GNU Parallel. Run 'man
1980 env_parallel' for details.
1982 * niceload --prg now searches for substrings if no process with the
1985 * GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
1986 Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
1988 * GNU Parallel was mentioned (with wrong citation) in: Dual Level
1989 Parallel Computations for LargeScale High-Fidelity Database to
1990 Design Aerospace Vehicles
1991 http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
1993 * Using ‘Parallel’ in Unix
1994 https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
1996 * JPEG Squish uses (and co-distributes) GNU Parallel:
1997 http://dantidswell.co.uk/jpeg-squish/
1999 * Bug fixes and man page updates.
2004 * Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
2005 http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
2006 http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2007 http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
2009 * Daily Quick Tip: parallel
2010 https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
2012 * Downloading a list of URLs
2013 http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
2015 * Using GNU Parallel and ImageMagick for Conversions
2016 http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2018 * Running bash commands in parallel
2019 http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
2021 * parallel processing in PDAL
2022 https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
2024 * A Million Text Files And A Single Laptop
2025 http://randyzwitch.com/gnu-parallel-medium-data/
2027 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
2028 http://www.slideshare.net/koji_matsuda/gnu-parallel
2030 * Bug fixes and man page updates.
2035 * --sql DBURL uses DBURL as storage for jobs and output. It does not
2036 run any jobs so it requires at least one --sqlworker. DBURL must
2039 * --sqlworker DBURL gets jobs from DBURL and stores the result back to
2042 * --sqlandworker is a shorthand for --sql and --sqlworker.
2044 * --sqlworker requires the output of a single job to fit in memory.
2046 * --results now also saves a file called 'seq' containing the sequence
2049 * If $PARALLEL_ENV is a file, then that file will be read into
2052 * man parallel_tutorial has been given an overhaul.
2054 * --workdir now accepts replacementstrings.
2056 * GNU Parallel was cited in: Possum - A Framework for
2057 Three-Dimensional Reconstruction of Brain Images from Serial
2058 Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
2060 * GNU Parallel was cited in: A Genetic Algorithm for the selection of
2061 structural MRI features for classification of Mild Cognitive
2062 Impairment and Alzheimer's Disease
2063 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
2065 * GNU Parallel was cited in: The Effect of Domain Modeling on
2066 Performance of Planning Algorithms
2067 http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
2069 * Plotting time tables for jobs run by GNU Parallel
2070 https://github.com/ziotom78/plot_joblog
2072 * GNU Parallel was used in: Mission Impossible: you have 1 minute to
2073 analyze the Ebola Genome https://www.biostars.org/p/119397
2075 * GNU Parallel is used in LAST: http://last.cbrc.jp/
2077 * Distributed Log Search Using GNU Parallel
2078 http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
2080 * Bug fixes and man page updates.
2085 * --transfer is now an alias for --transferfile {}.
2087 * --transferfile works like --transfer, but takes an argument like
2088 --return. This makes it possible to combine transferring files
2089 with multiple input sources: parallel -S server --tf {1} wc {2}
2090 {1} ::: * ::: -l -w -c
2092 * total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
2093 $_=total_jobs() =}' ::: {1..50}
2095 * GNU Parallel was cited in: Evolution and Learning in Heterogeneous
2097 http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
2099 * GNU Parallel was cited in: Achieving Consistent Doppler Measurements
2100 from SDO/HMI Vector Field Inversions
2101 http://arxiv.org/pdf/1511.06500.pdf
2103 * Flo uses GNU Parallel: https://github.com/wurmlab/flo
2105 * 使用 GNU parallel 來平行運算
2106 http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
2108 * Bug fixes and man page updates.
2113 * GNU Parallel packaged for CERN CentOS:
2114 http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
2116 * GNU Parallel was cited in: The Outer Solar System Origins Survey:
2117 I. Design and First-Quarter Discoveries
2118 http://arxiv.org/pdf/1511.02895.pdf
2120 * GNU Parallel was cited in: Contrasting genetic architectures of
2121 schizophrenia and other complex diseases using fast
2122 variance-components analysis
2123 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
2125 * GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
2126 using Support Vector Machines
2127 http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
2129 * GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
2130 Using Brownian Dynamics, Molecular Dynamics and Milestoning
2131 http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
2133 * GNU Parallel was cited in: A Detailed Characterization of Errors in
2134 Logic Circuits due to Single-Event Transients
2135 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
2137 * GNU Parallel was cited in: Arabic Speaker Emotion Classification
2138 Using Rhythm Metrics and Neural Networks
2139 http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
2141 * GNU Parallel was cited in: Stride Search: a general algorithm for
2142 storm detection in high resolution climate data
2143 http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
2145 * GNU Parallel was cited in: Decomposing Digital Paintings into Layers
2146 via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
2148 * GNU Parallel was cited in: Structure and evolutionary history of a
2149 large family of NLR proteins in the zebrafish
2150 http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
2152 * GNU Parallel was cited in: Evolution of movement strategies under
2153 competitive interactions
2154 http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
2156 * Automating large numbers of tasks
2157 https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
2159 * Max out your IOPs with GNU Parallel
2160 http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
2162 * Bug fixes and man page updates.
2167 * --plus makes it possible to use {##} as a shorthand for
2168 {= $_=$Global::JobQueue->total_jobs() =} which gives the the number
2169 of jobs to run in total.
2171 * {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
2174 * GNU Parallel is now mostly compatible with lsh
2175 (http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
2176 autossh (http://www.harding.motd.ca/autossh/).
2178 * --workdir ... now also works when run locally.
2180 * GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
2181 regular graph http://arxiv.org/pdf/1509.05933.pdf
2183 * GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
2185 http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html
2187 * GNU Parallel is used in TraitAR:
2188 https://testpypi.python.org/pypi/traitar/0.1.4
2190 * A parallel and fast way to download multiple files
2191 http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html
2193 * Usar GNU Parallel para aumentar el rendimiento de tus scripts
2194 http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/
2196 * Bug fixes and man page updates.
2201 * GNU Parallel was cited in: Flexible Modeling of Epidemics with an
2202 Empirical Bayes Framework
2203 http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382
2205 * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
2206 https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf
2208 * GNU Parallel was cited in: A Scalable Parallel Implementation of
2209 Evolutionary Algorithms for Multi-Objective Optimization on GPUs
2210 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074
2212 * GNU Parallel was cited in: How Can We Measure the Similarity Between
2213 Résumés of Selected Candidates for a Job?
2214 https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job
2216 * GNU Parallel was cited in: Interplay of cell dynamics and epithelial
2217 tension during morphogenesis of the Drosophila pupal wing
2218 http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf
2220 * Third-party selling GNU Parallel T-shirts
2221 http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html
2223 * Joys of gnu parallel
2224 http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/
2226 * Crop and resize images with bash and ImageMagick
2227 https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/
2229 * Three Ways to Script Processes in Parallel
2230 http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/
2232 * What It Looks Like to Process 3.5 Million Books
2233 http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/
2235 * Bug fixes and man page updates.
2240 * If $job->skip() is called in {= =} the job will not be run.
2242 * @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
2243 $_="j" =}' ::: 1 2 3 ::: 4 5 6
2245 * Version of GNU Parallel that uses PostgreSQL as backend
2246 https://github.com/stephen-fralich/parallel-sql/
2248 * SpeedSeq: ultra-fast personal genome analysis and interpretation
2249 http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html
2251 * GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep
2253 * Who actually reads the code?
2254 http://www.fsf.org/blogs/community/who-actually-reads-the-code
2256 * Introduction to GNU Parallel
2257 http://erictleung.com/2015/08/06/intro-to-gnu-parallel/
2259 * ¿Alguien se lee el código?
2260 http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html
2262 * ¿Quién se lee el código fuente?
2263 https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/
2265 * Distribution des traitements avec GNU Parallel
2266 http://blog.inovia-conseil.fr/?p=226#4
2268 * Эксперимент по проверке, читают ли код открытых проектов
2269 http://www.opennet.ru/opennews/art.shtml?num=42718
2271 * 多核心主機搭配 GNU parallel
2272 http://blog.zeroplex.tw/2015/08/gnu-parallel.html
2274 * Bug fixes and man page updates.
2279 * If a record fits in a block, --block only reads upto the size of
2280 --block. If not: --block reads a full --block more.
2282 * Due to widely spread distributions still using --tollef even after a
2283 year of being retired following a year of being obsolete, --tollef
2284 now gives an error unless used with --gnu.
2286 * --nice now uses a perl wrapper instead of the nice command.
2288 * Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
2291 * A parser for GNU Parallel --joblog files:
2292 https://github.com/harryjubb/joblog
2294 * GNU Parallel was cited in: Dynamical formation & scattering of
2295 hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
2296 collisions http://arxiv.org/pdf/1507.03593.pdf
2298 * GNU Parallel was cited in: A Fast Compiler for NetKAT
2299 http://arxiv.org/pdf/1506.06378.pdf
2301 * GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
2303 http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
2305 * GNU Parallel was used in: Somatic mutation calling from the matched
2306 tumor-normal exome-sequencing
2307 http://fafner.meb.ki.se/biostatwiki/somac/
2309 * Parallel Processing from the Command Line
2310 https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
2312 * Using GNU Parallel to speed up network operations
2313 http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
2315 * Crawl faster with "parallel" - but how fast?
2316 http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
2318 * Simultaneously benchmark many URLs with ApacheBench and GNU parallel
2319 https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
2321 * Bug fixes and man page updates.
2326 * --halt has been rewritten completely. You can now combine
2327 percentages with success or fail. See the man page.
2329 * Exit values 102..254 have been removed. 101 means more than 100 jobs
2332 * Killing through --timeout, --memfree, or --halt is now done as a
2335 * --termseq determines which signals are sent when a job is killed.
2337 * An empty argument would previously cause no string to be
2338 inserted. This is now changed to '' being inserted, thus prepending
2339 a space to the output of: parallel echo {} b ::: ''
2341 * $PARALLEL_ENV can now be set to an environment prepending the
2342 command. Used in env_parallel as mentioned in the manpage.
2344 * --retry-failed will retry all failed jobs in a joblog. It will
2345 ignore any command given.
2347 * --ssh and $PARALLEL_SSH can be used to set the command used for
2348 ssh. The command is assumed to behave the same way as ssh.
2350 * --fifo now works in csh, too.
2352 * Q(...) can be used in {= =} to shell quote a string.
2354 * GNU Parallel was cited in: DockBench: An Integrated Informatic
2355 Platform Bridging the Gap between the Robust Validation of Docking
2356 Protocols and Virtual Screening Simulations
2357 http://www.mdpi.com/1420-3049/20/6/9977
2359 * GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
2361 http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
2363 * GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
2364 scattering and resonance calculations
2365 http://arxiv.org/pdf/1505.07691.pdf
2367 * GNU Parallel was cited in: A quantitative assessment of the Hadoop
2368 framework for analyzing massively parallel DNA sequencing data
2369 http://link.springer.com/article/10.1186/s13742-015-0058-5
2371 * GNU Parallel was cited in: A composite genome approach to identify
2372 phylogenetically informative data from next-generation sequencing
2373 http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
2375 * GNU Parallel is used in: taxator-tk
2376 http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
2378 * GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
2380 * GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
2382 * GNU Parallel is used in: A Fingerprint Identification System
2383 https://curve.carleton.ca/system/files/theses/28733.pdf
2385 * Job ad asking for GNU Parallel experience:
2386 http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
2388 * Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
2390 * Bug fixes and man page updates.
2395 * Security: The security issue for --sshlogin + --fifo/--cat has been
2396 fixed. Thereby all issues with
2397 http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
2400 * Security: After further security analysis the issue fixed in
2401 20150422 also fixed the problem for --tmux.
2403 * GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
2404 coordinated transcriptional regulation in gene expression
2406 http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
2408 * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
2409 Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
2410 Metagenomics and RNA-seq
2411 http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
2413 * GNU Parallel was cited in: Sequencing the cap-snatching repertoire
2414 of H1N1 influenza provides insight into the mechanism of viral
2415 transcription initiation
2416 http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
2418 * GNU Parallel was cited in: Genome assembly using Nanopore-guided
2419 long and error-free DNA reads
2420 http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
2422 * GNU Parallel was used (unfortunately with wrong citation) in:
2423 Comparing the CarbonTracker and TM5-4DVar data assimilation systems
2424 for CO2 surface flux inversions
2425 http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
2427 * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
2428 https://bitbucket.org/srp33/gsoa
2430 * A Quick and Neat :) Orchestrator using GNU Parallel
2431 http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
2433 * Execute commands on multiple computers using GNU Parallel (setting
2434 up a cluster on the cheap)
2435 https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
2437 * Functions and GNU parallel for effective cluster load management
2438 http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
2440 * Use parallel processing to save time importing databases
2441 http://drupalsun.com/node/41854
2443 * Run multiple ssh commands in parallel with GNU Parallel
2444 http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
2446 * Importing huge databases faster
2447 https://www.lullabot.com/blog/article/importing-huge-databases-faster
2449 * Parallel? Gnu parallel! https://debian.pro/1834
2451 * Bug fixes and man page updates.
2456 New in this release:
2458 * Security fix. An attacker on the local system could make you
2459 overwrite one of your own files with a single byte. The problem
2460 exist when you use --compress or --tmux or --pipe or --cat or
2461 --fifo. The attacker must figure out the randomly chosen file name
2462 and create a symlink within a time window of 15 ms.
2464 * --shuf will generate all jobs, and shuffle them before running
2465 them. This is useful to get a quick preview of the results before
2466 running the full batch.
2468 * GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
2470 * GNU Parallel was cited in: Scaling Machine Learning for Target
2471 Prediction in Drug Discovery using Apache Spark
2472 https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
2474 * GNU Parallel was cited in: Bayesian inference of protein structure
2475 from chemical shift data https://peerj.com/articles/861/
2477 * GNU Parallel was cited in: Toward Enhanced Metadata Quality of
2478 Large-Scale Digital Libraries: Estimating Volume Time Range
2479 https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
2481 * GNU Parallel was cited in: Experimental study on the Wind Farm
2482 Substation Cable Installation Problem
2483 http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
2485 * GNU Parallel was used in: https://github.com/KAPPS-/landsat-gifworks
2487 * GNU Parallel was used in: https://github.com/exascience/elprep
2489 * GNU Parallel was used in:
2490 http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
2492 * GNU Parallel was used in:
2493 http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
2495 * GNU Parallel was used in: Rapid haploid SNP calling
2496 https://github.com/tseemann/snippy
2498 * Pictures and Metadata
2499 http://www.ozzy.no/2015/02/05/pictures-and-metadata/
2501 * Task automation with bash and parallel
2502 https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
2504 * How To: Speed Up File Transfers in Linux using RSync with GNU
2506 http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
2508 * Mirroring a Git Repository
2509 https://avacariu.me/articles/mirroring-a-git-repository.html
2511 * Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
2512 https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
2515 http://www.zhihu.com/question/29257300
2517 * Bug fixes and man page updates.
2522 New in this release:
2524 * --number-of-cores respects 'taskset' on GNU/Linux.
2526 * --joblog --pipe gives the data send and received in the log.
2528 * GNU Parallel was tested to support 100 GB sized records in --pipe. A
2529 few bugs was fixed to support >2 GB records. It works, but is rather
2532 * GNU Parallel was cited in: RIG: Recalibration and Interrelation of
2533 genomic sequence data with the GATK
2534 http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
2536 * GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
2537 Improving metagenomic analysis with high performance classification
2538 and wide taxonomic attachment
2539 http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
2541 * GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
2542 shaped by declining effective population size
2543 http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
2545 * GNU Parallel was cited in: Evidence for DCO+ as a probe of
2546 ionization in the warm disk surface
2547 http://arxiv.org/pdf/1503.02659.pdf
2549 * GNU Parallel was cited in: De novo assembly and annotation of the
2550 Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
2551 from raw genomic reads and comparative analysis with the yellow
2552 fever mosquito (Aedes aegypti)
2553 http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
2555 * GNU Parallel was cited in: A General Approach to Network
2556 Configuration Analysis
2557 http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
2559 * GNU Parallel was cited in: Scrimer: designing primers from
2561 http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
2563 * GNU Parallel was cited in: Efficient Retrieval of Key Material for
2564 Inspecting Potentially Malicious Traffic in the Cloud
2565 http://sacko.uk/pdf/2015.1.pdf
2567 * GNU Parallel will be presented at Strataconf: Poor Man's Parallel
2569 http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
2571 * GNU Parallel was used in:
2572 https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
2574 * GNU Parallel was used in: https://github.com/martymac/fpart
2576 * GNU Parallel was used in:
2577 https://github.com/hoytak/diabetic-retinopathy-code
2579 * GNU Parallel was used in:
2580 https://github.com/mehmattski/HybSeqPipeline
2582 * GNU Parallel was used in:
2583 http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
2585 * Using GNU Parallel on a Raspberry Pi cluster:
2586 http://www.dcglug.org.uk/cluster-progress/
2588 * An introduction to vector tiling and map reduce in postgis:
2589 http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
2591 * Running scripts in parallel with GNU Parallel:
2592 http://code.jasonbhill.com/2015/03/
2594 * Mahout: Parallelising the creation of DecisionTrees:
2595 http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
2597 * High-Performance Scientific Computing: Running serial jobs in
2599 https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
2601 * Parallel cardinality on your laptop
2602 https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
2604 * Experiments about a better locate using grep
2605 http://a3nm.net/blog/better_locate.html
2607 * Homework with GNU Parallel:
2608 https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
2610 * Parallel - Jobs in Skripten parallelisieren:
2611 https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
2613 * GNU Parallel, czyli 100% użycia procesora
2614 http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
2616 * Bug fixes and man page updates.
2621 * --tmux has gotten a major overhaul.
2623 * GNU Parallel was cited in: RaftLib: A C++ Template Library for High
2624 Performance Stream Parallel Processing
2625 http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
2627 * GNU Parallel was cited in: Quantifying properties of hot and dense
2628 QCD matter through systematic model-to-data comparison
2629 http://arxiv.org/pdf/1502.00339.pdf
2631 * GNU Parallel was cited in: Towards Collaborative Exploration and
2632 Analysis of Big Data from Mars: A Noachis Terra Case Study
2633 http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
2635 * GNU Parallel was used (unfortunately with wrong citation) in:
2636 Performance and Scaling Comparison Study of RDBMS and NoSQL
2638 http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
2640 * GNU Parallel was used (unfortunately without citation) in: Parallel
2641 Implementation of Big Data Pre-Processing Algorithms for Sentiment
2642 Analysis of Social Networking Data
2643 http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
2645 * GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
2646 Ultra-fast personal genome analysis and interpretation
2647 http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
2649 * Zip Folders with GNU Parallel
2650 http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
2652 * Using GNU Parallel with Freesurfer
2653 http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
2655 * GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
2657 * Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
2659 * Bug fixes and man page updates.
2664 * Remote jobs now send stderr (standard error) to stderr (standard
2665 error) instead of stdout (standard output).
2667 * Remote execution command is now packed using base64 encoded
2668 bzip2. This means that big environments (app. 100 KB) can be
2669 transferred. This change makes remote execution alpha quality.
2671 * --semaphoretimeout now takes a negative value. This means give up if
2672 the semaphore is not gotten within the timeout.
2674 * --halt -1 and -2 now means halt if a job succeeds (so the opposite
2677 * --no-keep-order will reverse --keep-order.
2679 * Bash's second fix of shellshock caused --env to break again when
2680 exporting functions. This has been fixed again.
2682 * A semibig refactoring of big functions. All non-trivial functions
2683 are now less than 100 lines. The refactoring makes this release beta
2686 * A description of the design decisions for GNU Parallel can be found
2687 in 'man parallel_design'.
2689 * A bug fix in replacement strings caused rewrite of the replacement
2690 function. This makes use of replacement strings alpha quality.
2692 * GNU Parallel was cited in: Improving Energy and Performance with
2693 Spintronics Caches in Multicore Systems
2694 http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
2696 * GNU Parallel was cited in: Parallel post-processing with MPI-Bash
2697 http://dl.acm.org/citation.cfm?id=2691137
2699 * GNU Parallel was cited in: Distinguishing cause from effect using
2700 observational data: methods and benchmarks
2701 http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
2703 * GNU Parallel was cited in: Data Science at the Command Line
2704 http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
2706 * GNU Parallel was cited in: Resolution of Genetic Map Expansion
2707 Caused by Excess Heterozygosity in Plant Recombinant Inbred
2708 Populations http://www.g3journal.org/content/4/10/1963.full.pdf
2710 * GNU Parallel was cited in: Bayesian Inference of Protein Structure
2711 from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
2713 * GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
2714 in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
2716 * GNU Parallel was cited in: Computação Verde na Camada de Aplicação
2717 https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
2719 * GNU Parallel was cited in: Frameshift alignment: statistics and
2720 post-genomic applications
2721 http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
2723 * GNU Parallel was cited in: Towards Recommender Engineering Tools and
2724 Experiments for Identifying Recommender Differences
2725 http://elehack.net/research/thesis/mde-thesis.pdf
2727 * GNU Parallel was cited in: Speaker Environment Classification Using
2728 Rhythm Metrics in Levantine Arabic Dialect
2729 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
2731 * GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
2732 http://arxiv.org/pdf/1501.02155.pdf
2734 * GNU Parallel was cited in: Allocation Policy Analysis for Cache
2735 Coherence Protocols for STT-MRAM-based caches
2736 http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
2738 * GNU Parallel was cited in: Using Trusted Platform Module for
2739 securing virtual environment access in Cloud
2740 http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
2742 * GNU Parallel was cited in: Weakly Supervised Learning for
2743 Compositional Sentiment Recognition
2744 http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
2746 * GNU Parallel was cited in: Agility and Performance in Elastic
2747 Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
2749 * GNU Parallel was used (unfortunately without citation) in: Large
2750 Scale Author Name Disambiguation in Digital Libraries
2751 http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
2753 * GNU Parallel is used in BEDOPS:
2754 https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
2756 * Job ad asking for GNU Parallel skills:
2757 http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
2759 * GNU Parallel: Open Source For You (OSFY) magazine, October 2013
2761 http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
2763 * Multithreaded Encryption and Compression
2764 http://www.krazyworks.com/multithreaded-encryption-and-compression/
2766 * GNU Parallel on OSX and Linux
2767 https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
2769 * How to build gnu parallel from source on Ubuntu PC?
2770 http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
2772 * GNU parallel for openaddr-process-one
2773 https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
2775 * From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
2777 * Software Development Tooling
2778 http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
2780 * コマンドを並列に実行するGNU parallelがとても便利
2781 http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
2783 * Bug fixes and man page updates.
2788 * Remote systems can be divided into hostgroups (e.g. web and db) by
2789 prepending '@groupname/' to the sshlogin. Multiple groups can be
2790 given by separating groups with '+'. E.g. @web/www1 @web+db/www2
2793 * Remote execution can be restricted to servers that are part of one
2794 or more groups by '@groupname' as an sshlogin. Multiple groups can
2795 be given by separating groups with '+'. E.g. -S @web or -S @db+web
2797 * With --hostgroup you can restrict arguments to certain hostgroups by
2798 appending '@groupname' to the argument. Multiple groups can be
2799 given by separating groups with '+'. E.g. my_web_arg@web
2800 db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
2801 developing a prototype for this.
2803 * GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
2804 Massively Parallel Sequencing Data Analysis using Hadoop
2805 http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
2807 * GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
2808 the Histological Quantification of Whole Slide Images
2809 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
2811 * GNU Parallel was cited in: Exploring a multiprocessor design space
2812 to analyze the impact of using STT-RAM in the memory hierarchy
2813 http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
2815 * Command-Line OCR with Tesseract on Mac OS X
2816 https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
2818 * Bug fixes and man page updates.
2823 * --env was changed to deal with Bash's new way of exporting a function.
2825 * GNU Parallel was cited in: Exclusion of cosmic rays in
2826 protoplanetary disks. II. Chemical gradients and observational
2827 signatures http://iopscience.iop.org/0004-637X/794/2/123/article
2829 * GNU Parallel was cited in: Application of Machine Learning to
2830 Algorithm Selection for TSP
2831 http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
2833 * GNU Parallel was cited in: Performance Models for LTE-Advanced
2835 http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
2837 * GNU Parallel was used (unfortunately without citation) in: De Novo
2838 Insertions and Deletions of Predominantly Paternal Origin Are
2839 Associated with Autism Spectrum Disorder
2840 http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
2842 * GNU Parallel was determined 'popular' by Statistical Analysis of
2843 Popular Open Source Software Projects and Their Communities
2844 http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
2846 * GNU Parallel is demonstrated in: Data Science at the Command Line:
2847 Facing the Future with Time-Tested Tools
2849 * GNU Parallel was covered in a talk at Sydney Perl Mongers group
2850 http://www.openfusion.net/talks/pwp/#24
2852 * GNU Parallel and how to get started with it
2853 http://www.jduck.net/blog/2014/09/30/gnu-paralell/
2855 * Behat/Selenium/Parallel
2856 http://jaffamonkey.com/behat-selenium-parallel/
2858 * Comparing Golang, Scala, Elixir and Ruby for ETL
2859 http://www.dimroc.com/2014/09/29/etl-language-showdown/
2861 * Assemble a list of which of these hosts are up or down
2862 http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
2864 * Running commands on many nodes simultaneously
2865 http://opsfun.wordpress.com/2014/03/31/19/
2867 * Ubuntu 13.04でGNU ParallelをGNUモードで動かす
2868 http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
2870 * Bug fixes and man page updates.
2875 * If the file give as --sshloginfile is changed it will be re-read
2876 when a job finishes though at most once per second. This makes it
2877 possible to add and remove hosts while running.
2879 * Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
2881 * OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
2883 * GNU Parallel was presented at Balti and Bioinformatics "On-Air"
2884 http://youtu.be/UtXlr19xTh8?t=2h5m0s
2886 * Pleiades Plus uses GNU Parallel
2887 https://github.com/ryanfb/pleiades-plus
2889 * Imagemagick and GNU Parallel
2890 http://deepdish.io/2014/09/15/gnu-parallel/
2892 * GNU Parallel (Sebuah Uji Coba)
2893 http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
2895 * GNU Parallel: 并行执行Linux命令
2896 http://blog.csdn.net/xzz_hust/article/details/39183837
2901 * GNU Parallel now uses the same shell it was started from as the
2902 command shell for local jobs. So if GNU Parallel is started from
2903 tcsh it will use tcsh as its shell even if the login $SHELL is
2904 different. For remote jobs the login $SHELL will be used.
2906 * The whole current environment in bash can be copied by using a shell
2907 wrapper function (Search manual for env_parallel).
2909 * --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
2910 {...} {/..} {/...}. The idea being that '+foo' matches the opposite
2911 of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
2912 = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
2914 * GNU Parallel now deals correctly with the combination
2915 rsync-3.1.X-client and rsync-2.5.7-server
2917 * GNU Parallel was cited in: A Web Service for Scholarly Big Data
2918 Information Extraction
2919 http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
2921 * Comparison of the speed of different GNU Parallel versions:
2922 http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
2924 * GNU Parallel was covered in the webcast 2014-08-20: Data Science at
2925 the Command Line http://www.oreilly.com/pub/e/3115
2927 * Distributed processing with GNU parallel
2928 http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
2930 * A Peek into GNU Parallel
2931 http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
2933 * Сборка GNU parallel для CentOS/RHEL
2934 http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
2936 * Bug fixes and man page updates.
2941 * {= perl expression =} can be used as replacement string. The
2942 expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
2943 the string. This makes replacement strings extremely flexible.
2945 * Positional perl expressions (similar to {2}) are given as {=2 perl
2946 expression=} where 2 is the position.
2948 * One small backwards incompatibility: {1}_{2} will replace {2} with
2949 the empty string if there is only one argument. Previously {2} would
2950 have been left untouched.
2952 * Replacement strings can be defined using --rpl. E.g. parallel --rpl
2953 '{.gz} s/\.gz$//' echo {.gz} ::: *.gz
2955 * The parenthesis around {= perl expression =} can be changed with
2958 * --tmux will direct the output to a tmux session instead of
2959 files. Each running jobs will be in its own window.
2961 * --halt 10% will stop spawning new jobs if 10% failed so far.
2963 * GNU Parallel was cited in: bammds: A tool for assessing the ancestry
2964 of low depth whole genome data using multidimensional scaling (MDS)
2965 http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
2967 * GNU Parallel was cited in: Molecular ferroelectric contributions to
2968 anomalous hysteresis in hybrid perovskite solar cells
2969 http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
2971 * GNU Parallel was cited in: Energy Sorghum-a genetic model for the
2972 design of C4 grass bioenergy crops
2973 http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
2975 * GNU Parallel was cited in: Web-scale Content Reuse Detection
2976 www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
2978 * Tell your friends to sign up for the Webcast at 2014-08-20 covering
2979 GNU Parallel: Data Science at the Command Line
2980 http://www.oreilly.com/pub/e/3115
2982 * GNU Parallel all the things!
2983 http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
2985 * Shell command composition and dispatch
2986 http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
2988 * Parallelising plink (or anything else) the easy way
2989 http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
2991 * Easy and cheap cluster building on AWS
2992 https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
2994 * Paralelizace běžných činností v konzoli pomocí GNU Parallel
2995 http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
2997 * [原] Ubuntu 下使用 parallel 命令的注意事项
2998 http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
3000 * 简单的并行, 可使用GNU parallel
3001 http://jerkwin.github.io/2014/06/10/GNU-parallel/
3003 * Bug fixes and man page updates.
3008 * --shebang and --shebang-wrap now works on FreeBSD.
3010 * --pipepart works with --header, --regexp, --cat and --fifo.
3012 * ./configure --disable-documentation will not build documentation.
3014 * {%} works as job slot.
3016 * GNU Parallel was cited in: Energy Efficient, High-speed
3017 Communication in WSNs
3018 https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
3020 * GNU Parallel was cited in: Ferroelectric contributions to anomalous
3021 hysteresis in hybrid perovskite solar cells
3022 http://arxiv.org/pdf/1405.5810.pdf
3024 * Processes Paralleling to Speed up Computing and Tasks Execution in
3026 http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
3028 * Moving / Copying lots of s3 files quickly using gnu parallel
3029 http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
3031 * Speeding up grep log queries with GNU Parallel
3032 http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
3034 * Ubuntu - Gnu parallel - It's awesome
3035 http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
3037 * Export quicklooks with vector overlay using TuiView
3038 http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
3040 * GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
3042 * GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
3044 * Bug fixes and man page updates.
3049 * Use --semaphoretimeout to ignore the semaphore lock after a while.
3051 * {%} introduced as job slot replacement string. It has known bugs.
3053 * --slotreplace changes slot replacement string.
3055 * GNU Parallel officially in Solaris 11.2beta
3056 https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
3058 * GNU Parallel was cited in: A Comparison of Antenna Placement
3059 Algorithms http://abhinavjauhri.com/publications/eap.pdf
3061 * Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
3062 https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
3064 * BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
3066 * Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
3068 * Convert FLAC to MP3 with GNU parallel
3069 http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
3071 * JD Edwards Business Function Documentation
3072 http://www.azertech.net/content/jd-edwards-business-function-documentation
3074 * Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
3076 * How I start a bioinformatics project
3077 http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
3079 * No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
3081 * Bug fixes and man page updates.
3086 * --pipepart is a highly efficient alternative to --pipe if the input
3087 is a real file and not a pipe.
3089 * If using --cat or --fifo with --pipe the {} in the command will be
3090 replaced with the name of a physical file and a fifo respectively
3091 containing the block from --pipe. Useful for commands that cannot
3092 read from standard input (stdin).
3094 * --controlmaster has gotten an overhaul and is no longer
3097 * --env is now copied when determining CPUs on remote system. Useful
3098 for copying $PATH if parallel is not in the normal path.
3100 * --results now chops the argument if the argument is longer than the
3101 allowed path length.
3103 * Build now survives if pod2* are not installed.
3105 * The git repository now contains tags of releases.
3107 * GNU Parallel was cited in: Proactive System for Digital Forensic
3109 http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
3111 * GNU Parallel was cited in: Beyond MAP estimation with the
3112 track-oriented multiple hypothesis tracker
3113 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
3115 * GNU Parallel was cited in: Prokka: rapid prokaryotic genome
3117 http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
3119 * GNU Parallel was used (unfortunately with improper citation) in:
3120 Perspectives in magnetic resonance: NMR in the post-FFT era
3121 http://www.sciencedirect.com/science/article/pii/S1090780713003054
3123 * GNU Parallel is used in https://github.com/cc2qe/speedseq
3125 * Batch XML validation at the command line.
3126 http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
3128 * freebayes-parallel uses GNU Parallel
3129 https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
3131 * Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
3133 * Speeding Up Grep Log Queries with GNU Parallel
3134 http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
3136 * How to run tbss_2_reg in parallel
3137 http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
3139 * GNU parallel example: blastn https://asciinema.org/a/8775
3141 * Iterative DNS Brute Forcing
3142 http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
3144 * Ejecutando comandos en paralelo
3145 http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
3147 * Ejecutando en paralelo en bash (ejemplo con rsync)
3148 http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
3150 * Bug fixes and man page updates.
3155 * Offical package for Alpine Linux now exists:
3156 http://alpinelinux.org/apk/main/x86/parallel
3158 * GNU Parallel was cited in: Estimating uncertainties in statistics
3159 computed from direct numerical simulation
3160 http://dx.doi.org/10.1063/1.4866813
3162 * GNU Parallel was cited in: Vehicle routing problems with time
3163 windows and multiple service workers: a systematic comparison
3164 between ACO and GRASP
3165 http://link.springer.com/article/10.1007/s10100-014-0341-z
3167 * GNU Parallel, quick and easy
3168 http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
3170 * Using Multiple CPU Cores With Command Line Tools
3171 http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
3173 * Batch convert mp3 CBR to VBR
3174 http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
3176 * Running Behat in parallel with Selenium grid
3177 http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
3179 * Git-Mirror per cronjob aktuell halten
3180 https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
3182 * Пишем многопоточный скрипт на bash
3183 http://dafter.ru/duf/howto/130.html
3185 * 如何利用多核CPU来加速你的Linux命令
3186 http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
3188 * Bug fixes and man page updates.
3193 * --tollef has been retired.
3195 * --compress has be redesigned due to bugs.
3197 * Format of --eta and --joblog has changed slightly.
3199 * GNU Parallel was cited in: Speaker Verification and Keyword Spotting
3200 Systems for Forensic Applications
3201 http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
3203 * GNU Parallel was cited in: Scaleable Code Clone Detection
3204 http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
3206 * GNU Parallel was cited in: Clone Detection that scales
3207 http://scg.unibe.ch/archive/masters/Vogt14a.pdf
3209 * GNU Parallel was cited in: Scalable Positional Analysis for Studying
3210 Evolution of Nodes in Networks
3211 http://arxiv-web3.library.cornell.edu/pdf/1402.3797
3213 * GNU Parallel was cited in: Aggregate Characterization of User
3214 Behavior in Twitter and Analysis of the Retweet Graph
3215 http://arxiv.org/pdf/1402.2671v1
3217 * GNU Parallel was used (unfortunately without citation) in: Causal
3218 Network Models for Predicting Compound Targets and Driving Pathways
3220 http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
3222 * GNU Parallel was used (unfortunately without citation) in:
3223 Performance and Energy Efficiency of Common Compression /
3224 Decompression Utilities
3225 http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
3227 * GNU Parallel was used (unfortunately without citation) in: SpringFS:
3228 Bridging Agility and Performance in Elastic Distributed Storage
3229 http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
3231 * GNU Parallel was recommended (without citation) in: Redesigning the
3232 Specificity of Protein-DNA Interactions with Rosetta
3233 http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
3235 * GNU Parallel is co-distributed with RepeatExplorer
3236 http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
3238 * Convert MP3 to a scrolling spectrum waterfall plot video
3239 http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
3241 * PHP wrapper class for the GNU Parallel tool
3242 https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
3244 * Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
3246 * Copias de archivos con rsync y parallel
3247 http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
3249 * Single-Thread-Programme auf Multicore-Rechnern parallelisieren
3250 http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
3252 * Распараллеливаем процессы для ускорения вычислений и выполнения
3253 заданий в Linux http://savepearlharbor.com/?p=210480
3255 * Bug fixes and man page updates.
3260 * GNU Parallel was cited in: On the likelihood of multiple bit upsets
3262 http://arxiv-web3.library.cornell.edu/pdf/1401.1003
3264 * HaploClique uses GNU Parallel
3265 https://github.com/armintoepfer/haploclique
3267 * Scraping NSScreencast
3268 https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
3270 * 30 Cool Open Source Software I Discovered in 2013
3271 http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
3273 * [Unix] 13. The power of doing things in Parallel
3274 http://leetaey.tistory.com/384
3276 * Parallel the execution of a job that read from stdin
3277 http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
3279 * Mon Make à moi (6:38-11:50)
3280 http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
3282 * Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
3283 effizienter in der Shell arbeiten
3284 https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
3286 * Summary of GNU Parallel tutorial
3287 http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
3289 * Bug fixes and man page updates.
3294 * GNU Parallel now has a motto: For people who live life in the
3297 * Detect if the buffer dir $TMPDIR runs out of space. This changes a
3298 central piece of code, making this release alpha quality.
3300 * --keep-order --(n)onall will sort according to the sshlogin.
3302 * Detect the number of CPUs on DEC Tru64.
3304 * GNU sql: --list-tables for sqlite3.
3306 * GNU Parallel was cited in: Variational Message-Passing: Extension to
3307 Continuous Variables and Applications in Multi-Target Tracking
3308 http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
3310 * GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
3312 https://www.duo.uio.no/handle/10852/37431
3314 * GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
3316 http://repositorio.ul.pt/handle/10451/9436
3318 * GNU Parallel was cited in: Diacritization, automatic segmentation
3319 and labeling for Levantine Arabic speech
3320 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
3322 * GNU Parallel was cited in: Investigation of emotion classification
3323 using speech rhythm metrics
3324 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
3326 * GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
3327 and Non-Native Speaking Styles
3328 http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
3330 * GNU Parallel was cited in: Evolutionary optimization of wetlands
3332 http://dl.acm.org/citation.cfm?id=2480400
3334 * GNU Parallel was cited (unfortunately with wrong citation) in:
3335 RDBMS vs NoSQL: Performance and Scaling Comparison
3336 http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
3338 * GNU Parallel was used (without proper citation) in: Comprehensive
3339 Analysis Pipeline for Discovery of Human Genetic Variation
3340 http://www.google.com/patents/US20130311106
3342 * Encrypt and decrypt in parallel with GPG
3343 http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
3345 * Using GNU Parallel to create a SVM classifier
3346 http://ivanyu.me/blog/2013/12/01/parallel/
3348 * Parallel xz compression
3349 http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
3351 * Got CPUs to burn? Put 'em to work with GNU parallel
3352 http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
3355 http://pastebin.com/JmnB9ffq
3357 * Gnu Parallel for fun and profit
3358 https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
3360 * Parallelization of Exploitation
3361 http://rantsideasstuff.com/parallelization-of-exploitation/
3363 * Running assemblies in parallel
3364 https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
3366 * Procesando la contabilidad del PP
3367 http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
3369 * Mon make à moi (French)
3370 http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
3372 * Bug fixes and man page updates.
3377 * A citation notice is printed on stderr only if stderr is a terminal,
3378 the user has not specified --no-notice and the user has not run
3379 --bibtex once. This makes the release alpha quality.
3381 * --compress will compress temporary files. If the output is big and
3382 very compressible this will take up less disk space in $TMPDIR and
3383 possibly be faster due to less disk I/O.
3385 * --compress-program comtrols which program to use for compressing
3388 * --bar show progress as a progress bar compatible with zenity.
3390 * --resume can now be used with --result: Jobs already run will be
3393 * --transfer and --basefile support paths relative to the --workdir by
3394 inserting /./ into the path.
3396 * GNU Parallel was cited in: fastphylo: Fast tools for phylogenetics
3397 http://www.biomedcentral.com/1471-2105/14/334/abstract
3399 * Using GNU parallel
3400 http://davetang.org/muse/2013/11/18/using-gnu-parallel/
3402 * Techlux - GNU - Parallel (German)
3403 https://techlux.de/blog/2013/11/07/gnu-parallel/
3405 * awk, sed, bzip2, grep, wc на всех ядрах
3406 http://vk.com/page-30666517_45528467
3408 * 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
3409 http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
3411 * GNU Parallel (Japanese)
3412 http://jarp.does.notwork.org/diary/201311b.html#20131117
3414 * Bug fixes and man page updates.
3419 * --transfer files with /./ in the path will copy the files relative
3422 * The maximal command length is now cached in a file halfing the
3425 * GNU Parallel was cited in: Investigating speaker gender using rhythm
3426 metrics in Arabic dialects
3427 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
3429 * GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
3430 lastensuojelun asiakaskertomuksista
3431 https://tampub.uta.fi/handle/10024/84978
3433 * Some Additional Useful Bioinformatics Software
3434 http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
3436 * GNU Parallel Example Screen Cast (bil to Geotiff conversion)
3437 http://www.youtube.com/watch?v=PpF27eC7Mys
3439 * Using GNU Parallel to roll-your-own Map Reduce!
3440 http://www.rankfocus.com/hello-world/
3442 * Use multiple CPU Cores with your Linux commands
3443 http://www.rankfocus.com/use-cpu-cores-linux-commands/
3445 * Using GNU Parallel at HPC @ Uni.lu
3446 https://hpc.uni.lu/users/use_cases/
3448 * Scaling up with parallelization
3449 https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
3451 * How to teach yourself to be a technical tester
3452 http://infiniteundo.com/post/62421363463/qa-toc
3454 * Faster Rasters For All
3455 http://2013.foss4g.org/conf/programme/presentations/52/
3457 * Optimizing translated file downloads
3458 http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
3460 * EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
3461 http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
3463 * Best Practices for Amazon EMR
3464 http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
3466 * Computing checksums for backup
3467 https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
3469 * Un exemplu de utilizare a programului GNU parallel
3470 http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
3473 http://www.slideshare.net/drakeguan/part1-23705978
3475 * なんか気持ちよかです Gnu Parallel
3476 http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
3478 * Bug fixes and man page updates.
3483 * PDF-files of documentation is now included.
3485 * Cloning at warp speed 100 VMs in 1 minute using one command line
3486 http://www.beebotech.com.au/tag/command-line/
3488 * Calcul Quebec's introduction to GNU Parallel
3489 https://wiki.calculquebec.ca/w/GNU_parallel
3491 * Brincando com o GNU parallel
3492 http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
3494 * GNU Parallelで並列処理を行う
3495 http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
3497 * Bug fixes and man page updates.
3502 * A tutorial showing much of GNU Parallel's functionality. Spend an
3503 hour walking through the tutorial. Your commandline will love you
3504 for it. man parallel_tutorial
3506 * --line-buffer will buffer output on line basis. --group keeps the
3507 output together for a whole job. --ungroup allows output to mixup
3508 with half a line coming from one job and half a line coming from
3509 another job. --line-buffer fits between these two; it prints a full
3510 line, but will allow for mixing lines of different jobs.
3512 * --record-env records all variables and functions set. Useful to
3513 record the normal environment before using --env _.
3515 * --env _ exports all functions and variables to the remote server
3516 except for the ones recorded.
3518 * New signing key. Due to recommendations from NIST
3519 http://www.keylength.com/en/4/ the signing key was changed from
3520 1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
3522 * Agalma: an automated phylogenomics workflow
3523 http://arxiv.org/pdf/1307.6432
3525 * Job ad asking for GNU Parallel expertise
3526 http://seattle.craigslist.org/est/sof/4006079352.html
3528 * Transient Beowulf Clustering with GNU Parallel and SSHfs
3529 http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/
3531 * Aligning to unique regions
3532 http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/
3534 * Top 10 scripting tricks for basic bioinformatics
3535 http://students.washington.edu/bowmanjs/wordpress/?p=873
3537 * Using GNU Parallel to speed up and simplify data analyzes
3538 http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/
3540 * Compression of files in parallel using GNU parallel
3541 http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html
3543 * Using GNU Parallel with Amazon
3544 media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
3546 * Some useful comments on GNU Parallel
3547 https://news.ycombinator.com/item?id=6209767
3549 * Using GNU Parallel to count reads mapping to genes for multiple BAMs
3550 http://drduanehassane.com/blog/sequencing-resources
3552 * TimeMachineっぽいバックアップスクリプト
3553 http://rio.tc/2013/07/timemachine-1.html
3555 * GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
3556 http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab
3558 * Bug fixes and man page updates.
3563 * --round-robin with --pipe will write all blocks to already running
3566 * --env can now transfer Bash function for remote execution. That is
3569 * GNU Parallel was used (unfortunately with improper citation) in:
3570 Understanding the Impact of E-Commerce Software on the Adoption of Structured Data on the Web
3571 http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1
3573 * GNU Parallel was used (unfortunately with improper citation) in:
3574 CWI at TREC 2012, KBA track and Session Track
3575 http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf
3577 * Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
3578 Interactions through Optimal Wall Shaping.
3579 http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653
3581 * Using GNU parallel to convert images.
3582 http://www.brunokim.com.br/blog/?p=18
3584 * A quick way to parallelize.
3585 http://timotheepoisot.fr/2013/07/08/parallel/
3587 * GNU Parallel 20130522 ('Rana Plaza') 发布,并行作业执行.
3588 http://www.open-open.com/news/view/371301
3590 * Quite a few bug fixes and man page updates.
3595 * --xapply now recycles arguments if an input source has more
3596 arguments than others.
3598 * The sleep time between jobs is now both increased and decreased
3601 * 10 seconds installation check the signature using GnuPG if GnuPG is
3604 * Developer job asking for GNU Parallel expertise.
3605 http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central
3607 * A small utility program to run youtube-dl in parallel.
3608 https://github.com/dlh/youtube-dl-parallel
3610 * Parallelizing Freesurfer:
3611 http://blog.cogneurostats.com/?p=148
3613 * Bug fixes and man page updates.
3618 * --ctrlc is now default if --pipe is not used; thus making it
3619 possible to kill remotely started jobs simply by pressing Ctrl-C.
3621 * --timeout 200% now means kill jobs that take more than twice the
3622 time of the median run time of a job.
3624 * Jobs are now distributed round robin when having mulitiple
3625 --sshlogin instead of filling up one --sshlogin at a time.
3627 * niceload: darwin version of --io --mem --swap. Thanks to Anders F
3630 * Bug fixes and man page updates.
3635 * 10 seconds installation: wget -O - pi.dk/3 | sh
3637 * HPUX CPU/core detection. Thanks to Javier Tarradas.
3639 * CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
3641 * --ctrlc will send SIGINT to tasks running on remote computers and
3644 * --load now uses 'ps' to see immediately see the number of running
3645 processes instead of 'uptime' thus making --load react much faster.
3647 * Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
3648 bugs. Some of these required quite extensive changes making this
3649 release beta quality.
3651 * --retries works with --onall.
3653 * The new --load computation now works on FreeBSD 7.
3655 * --nice works under tcsh.
3657 * GNU Parallel is officially supported in NetBSD.
3658 http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html
3660 * GNU Parallel is accepted for openSUSE.
3661 http://software.opensuse.org/package/gnu_parallel
3663 * GNU Parallel can be installed under Microsoft Windows (CygWin).
3664 http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx
3666 * Excuses for not installing GNU Parallel.
3667 http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html
3669 * Job advert that requires GNU Parallel competence.
3670 http://versium.com/about/careers/
3672 * Parallelizing Batch Jobs for Fun and Profit.
3673 http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
3675 * Processing Transcription Start Sites(TSS) for the entire Mouse genome.
3676 http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/
3678 * GNU parallel is used throughout Scrimer.
3679 http://scrimer.readthedocs.org/en/latest/
3681 * GNU Parallel helped making public documents searchable.
3682 http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html
3684 * Identifying big movie files (German).
3685 http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/
3687 * Bug fixes and man page updates.
3692 * --resume works with --pipe.
3694 * --resume-failed will go through --joblog, redo the failed jobs and
3695 then continue like --resume.
3697 * Negative positional arguments count from the end: {-1} means the
3698 last argument, {-2} the second to last.
3700 * NetBSD CPU detection.
3702 * --blocksize increases exponentially if it smaller than a full
3705 * Processing n-line records (--pipe -L n) is now much faster.
3707 * --tollef is obsoleted after discussion on the mailing list.
3709 * GNU Parallel is the highest rated tool on:
3710 http://www.biostars.org/show/tools/?sort=votes&since=all%20time
3712 * GNU Parallel was loved during FSFE's #ilovefs campaign.
3713 http://fsfe.org/news/2013/news-20130212-01.en.html
3715 * Using GNU Parallel with s3cmd (Japanese).
3716 http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html
3718 * Intro to GNU Parallel (Chinese).
3719 http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/
3721 * Bug fixes and man page updates.
3726 * --sshdelay Delay starting next ssh by secs seconds. GNU parallel
3727 will pause secs seconds after starting each ssh. secs can be less
3730 * Official OpenBSD port:
3731 http://ftp.openbsd.org/ports/sysutils/parallel/
3733 * Official DragonFlyBSD package:
3734 http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/
3736 * Post about niceload in Hungarian:
3737 http://commandline.blog.hu/2013/01/02/niceload
3739 * 自炊スキャンデータをKobo Gloに最適化
3740 http://interstadial.wordpress.com/2013/01/20/
3742 * GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
3743 http://oshiire.to/archives/1686
3745 * Bug fixes and man page updates.
3750 * --shebang-wrap makes is possible to parallelize scripts by putting
3751 parallel in the shebang line (the first #! line in scripts).
3753 * --delay puts in a delay after starting each job. Useful to avoid
3754 raceconditions and thundering herd problems.
3756 * --results now uses / as separator instead of TAB and thus creates
3757 subdirs. Thanks to Drew Frank.
3759 * parallel: OpenBSD CPU detection. Thanks to Michał Markowski.
3761 * niceload --sensor allows for negative numbers to signify a lower
3762 number means the limit is lower.
3764 * niceload --prg suspend a named program that is already running.
3766 * niceload multiple --pid suspend process ids that are already running.
3768 * Convertir des images avec find et imagemagick
3769 http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html
3771 * Bug fixes and man page updates.
3776 * niceload --sensor makes it possible to use a program to control if a
3777 program should be suspended.
3779 * GNU Parallel was part of the justification for Nordic Free Software
3781 https://fsfe.org/news/2012/news-20121112-01.html
3783 * Dateien schneller packen und konvertieren mit GNU parallel
3784 http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel
3786 * Processing images from Lunar Reconnaissance Orbiter Narrow Angle
3787 Camera http://lunokhod.org/?p=774
3789 * GNU Parallel is used in types2: Type and Hapax Accumulation Curves
3790 http://www.cs.helsinki.fi/u/josuomel/types2/
3792 * GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
3793 PCA-based system for Dictionary Learning and Encoding for Robust
3795 http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
3796 http://www.cse.iitm.ac.in/~mrsri/ppca.pdf
3798 * Mapreduce avec parallel, cat et une redirection
3799 http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection
3801 * GNU Parallel for Large Batches of Small Jobs
3802 https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf
3804 * GNU Parallel used in black belt tip (8:50-10:12)
3805 https://aws.amazon.com/apac/awspodcast/episode20/
3807 * Bug fixes and man page updates.
3812 * --results structures output files so they can be imported using
3813 Pandas (http://pandas.pydata.org/). Useful when doing simulations to
3814 select output from some arguments.
3816 * Use --env to transfer environment variables through ssh to remote
3819 * GNU Parallel is accepted for Ubuntu Quantal.
3820 http://packages.ubuntu.com/quantal/parallel
3822 * GNU Parallel was requested for OpenSUSE (go vote!)
3823 https://features.opensuse.org/314461
3825 * Kneth's Korner: Map/Reduce and GNU Parallel
3826 http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html
3828 * Blog post in Japanese by Siguniang.
3829 https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
3830 (Siguniang mentions the logo is called 'The Cafe Wall Illusion')
3831 http://www.michaelbach.de/ot/ang_cafewall/index.html
3833 * GNU Parallel, where have you been all my life?
3834 http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
3836 * Reference-free ddRADseq analysis tools uses GNU Parallel.
3837 https://github.com/brantp/rtd#readme
3839 * When bash just isn’t quick enough.
3840 https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
3842 * Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
3843 http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
3845 * GNU Parallel Notes.
3846 http://xed.ch/help/parallel.html
3848 * Bug fixes and man page updates.
3853 * Due to a bugfix the main flow has changed. Making this release beta
3856 * Parallel Proxy Scraper & Checker Tool
3857 https://www.youtube.com/watch?v=iXCeR_XsP6o
3859 * Bug fixes and man page updates.
3864 * GNU Parallel was presented at Chiang Mai Bar Camp
3865 http://barcampchiangmai.org/
3867 http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/
3869 * I don't always max out all my CPUs, but when I do, I do it with GNU
3871 http://memegenerator.net/instance/22638454
3873 * Bug fixes and man page updates.
3878 * '-L n --pipe' will use records of n lines. This is useful when
3879 processing data that have fixed records with a fixed number of
3882 * --filter-hosts will remove down hosts. For each remote host: check
3883 that login through ssh works. If not: do not use this host.
3884 Currently you can not put --filter-hosts in a profile, $PARALLEL,
3885 /etc/parallel/config or similar. This is because GNU Parallel uses
3886 GNU Parallel to compute this, so you will get an infinite loop. This
3887 will likely be fixed in a later release.
3889 * --pipe now uses fork() instead of busy wait. The performance should
3890 be better on computers with >10 cores while remaining the same on
3891 computers with few cores.
3893 * GNU Parallel will be represented at Chiang Mai Bar Camp.
3894 http://barcampchiangmai.org/
3896 * Indexing Big Data on Amazon AWS: The Screencast
3897 (Check out his T-shirt at 18:40-21:00).
3898 http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/
3900 * biotoolbox uses GNU Parallel.
3901 https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper
3903 * Spiceweasel uses GNU Parallel.
3904 https://github.com/mattray/spiceweasel
3906 * GNU Parallel part of The Administrators Challenge.
3907 http://challenge.twistedrack.com/questions/qs3.php
3909 * Finding Oldest Firefox Code using GNU Parallel.
3910 http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/
3912 * Bug fixes (quite a few for remote job running) and man page updates.
3917 * Timings in --joblog now with milliseconds.
3919 * Thesis using GNU Parallel (correctly cited; hooray!).
3920 http://scholarworks.sjsu.edu/etd_projects/222/
3923 http://www.perzl.org/aix/index.php?n=Main.Parallel
3925 * Prokka uses GNU Parallel.
3926 http://bioinformatics.net.au/prokka-manual.html
3928 * GNU Parallel was presented at MUUG.
3929 http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/
3931 * Blog post: Manipulating many or large files with GNU parallel.
3932 http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html
3934 * Blog post: Running commands in parallel using bash.
3935 http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html
3937 * Blog post in Hungarian.
3938 http://commandline.blog.hu/2012/05/03/gnu_parallel
3940 * Popularity of GNU Parallel in Debian explodes.
3941 http://qa.debian.org/popcon-graph.php?packages=parallel
3943 * Bug fixes and man page updates.
3948 * A race condition bug caused restructuring of a central piece of the
3949 code. Thus this release of GNU Parallel should be considered beta
3952 * sql --dbsize will now list sizes of all databases if given no
3955 * GNU Parallel is now in Debian Unstable.
3956 apt-get install parallel
3958 * Article: Computational and experimental analyses of
3959 retrotransposon-associated minisatellite DNAs in the soybean genome.
3960 http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf
3962 * Blog post: GNU parallel - the best thing since sliced bread.
3963 https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/
3965 * Blog post: GNU Parallel makes everything faster.
3966 http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html
3968 * Blog post (German): Howto: GNU parallel.
3969 http://d24m.de/2012/04/05/howto-gnu-parallel/
3971 * Blog post: Running in Parallel
3972 http://interactivity.ifactory.com/2012/04/running-in-parallel/
3974 * 20000 watched the first intro video.
3977 * The first 5 have received their GNU Parallel merchandise
3978 https://www.gnu.org/software/parallel/merchandise.html
3980 * Bug fixes and man page updates.
3985 * Parallel Process Database Dumps.
3986 http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html
3988 * Using GNU Parallel to process images from Mars.
3989 http://lunokhod.org/?p=468
3991 * Using GNU Parallel with bzgrep.
3992 http://filip.rembialkowski.net/did-you-know-gnu-parallel/
3994 * Bug fixes and man page updates.
3999 * --workdir . will use the current working dir. If the current working
4000 dir is beneath your home dir, the value . is treated as the relative
4001 path to your home dir. This means that if your home dir is different
4002 on remote computers (e.g. if your login is different) the relative
4003 path will still be relative to your home dir.
4005 * A texinfo file is now generated from the POD file using pod2texi.
4007 * The bioinformatics article "Fast large-scale clustering of protein
4008 structures using Gauss integrals" mentions GNU Parallel. They forgot
4009 to add the reference. Please remember --bibtex if you use GNU
4010 Parallel in an article.
4011 http://bioinformatics.oxfordjournals.org/content/28/4/510.short
4013 * The first supporter received his merchandise. Did you order yours?
4014 https://www.gnu.org/software/parallel/merchandise.html
4016 * How to use GNU Parallel with samtools.
4017 http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html
4019 * How to use GNU Parallel for vacuuming PostgreSQL tables.
4020 http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/
4022 * Converting e-books with Calibre and GNU Parallel.
4023 http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/
4025 * Using GNU Parallel for tailing logfiles from multiple servers.
4026 http://silviud.blogspot.com/2012/02/shell-parallel-processing.html
4028 * Bug fixes and man page updates.
4033 * --header : uses the first input line as column names and you can
4034 then use {colname} as a replacement string in the command. This also
4035 works with multiple :::'s.
4037 * --header <regexp> matches a header as a regular expression and
4038 repeats the header for each block with --pipe.
4040 * --resume resumes from the last unfinished job. Useful if you stop
4041 GNU Parallel and restart it later with the same arguments.
4043 * niceload now propagates exit status correctly.
4045 * Show your support for GNU Parallel. For a limited time you can get a
4046 GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
4047 https://www.gnu.org/software/parallel/merchandise.html
4049 * Options -g -B -T -U -W -Y are retired as warned 6 months ago.
4051 * GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
4052 to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128
4054 * Article in IEEE Software on GNU Parallel. Thanks to Diomidis
4055 Spinellis. http://www.spinellis.gr/blog/20110911/
4057 * An article on Narwhal which uses GNU Parallel. They forgot to add
4058 the reference. Please remember --bibtex if you use GNU Parallel in
4060 http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf
4062 * Blog post on using GNU Parallel to speed up BLAST queries:
4063 http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html
4065 * Video showing Wake-on-LAN with GNU Parallel.
4066 https://www.youtube.com/watch?v=0mB-yIyKFLQ
4068 * Using GNU Parallel with Solr.
4069 http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html
4071 * First job ad including GNU Parallel:
4072 http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex
4074 * Bug fixes and man page updates.
4079 * --timeout will now kill grandchildren.
4081 * Interview in Hacker Public Radio.
4082 http://hackerpublicradio.org/eps.php?id=0860
4084 * Blog post in Chinese.
4085 http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html
4087 * Bug fixes and man page updates.
4092 * GNU Parallel package for Fedora.
4093 https://admin.fedoraproject.org/pkgdb/acls/name/parallel
4095 * Using GNU Parallel with Mozilla cross referencing.
4096 https://blog.mozilla.com/it/2011/11/15/mxr-improvements/
4098 * Neat flash presentation of GNU Parallel.
4099 http://prezi.com/0nq74b2elgtx/about-gnu-parallel/
4101 * How to create tar files of dirs in parallel.
4102 https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/
4104 * Article in Admin Network&Security by Ben Martin.
4105 http://www.admin-magazine.com/HPC/Articles/GNU-Parallel
4107 * Blog post in Polish.
4108 http://blog.tiger.com.pl/2011/01/05/gnu-parallel/
4110 * Blog post on using GNU Parallel of Mac OS X.
4111 http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/
4113 * Blog post in English by researcher.
4114 http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/
4116 * Blog entry in Chinese.
4117 http://blog.csdn.net/tossense/article/details/6889026
4119 * Blog entry in Japanese on managing many servers.
4120 http://hiroakis.com/blog/2011/11/13/gnu-parallel/
4122 * GNU Parallel is now part of ppbs.
4123 http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html
4125 * How to use GNU Parallel with MCX.
4126 http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster
4128 * Bug fixes and man page updates.
4133 * --tag prepends lines with the argument(s). If used with --(n)onall
4134 the line will be prepended with the sshlogin instead.
4136 * --shellquote does not run the command but quotes it using \'s.
4137 Useful for making quoted composed commands.
4139 * --profile can now be repeated merging multiple profiles.
4141 * --bibtex now gives the BibTeX entry.
4142 Thanks to Aleksandr Levchuk for testing.
4144 * Makefile for simple .deb package.
4145 cd packager/debian; make
4147 * sql: --list-databases lists the databases.
4149 * GNU Parallel officially in Fedora 16
4150 http://www.spinics.net/lists/fedora-package-announce/msg67130.html
4152 * Blog post on recompression FLAC audio.
4153 http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html
4155 * The most complex use of ::: I have seen so far.
4156 http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html
4158 * Example of using GNU Parallel with sudo.
4159 http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files
4161 * Use wget and gnu parallel to download mp3s at rocket speed.
4162 http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at
4164 * First CV referring to GNU Parallel.
4165 http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602
4167 * Cartwright labs usage of GNU Parallel.
4168 http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck
4170 * Bug fixes and man page updates.
4175 * --timeout implemented so that slow commands can be killed
4177 * CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.
4179 * Example of a parallel webcrawler in the man page.
4181 * Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
4182 http://wirtel.be/2011/07/15/rsync_parallel/
4184 * Blog post in Japanese.
4185 http://dminor11th.blogspot.com/2011/08/gnu-parallel.html
4187 * Blog post about optimizing JPEGs. Thanks to Thomas Jost.
4188 http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/
4190 * Bug fixes and man page updates.
4195 * niceload: --hard will suspend a program if a limit is reached - as
4196 opposed to just slowing the program down.
4198 * niceload: --soft will slow the program down - as opposed to
4199 suspending the program completely.
4201 * niceload: --run-io will slow down a program if disk io goes above a
4204 * niceload: --run-load will slow down a program if loadaverage goes
4205 above a certain limit.
4207 * niceload: --run-mem will slow down a program if free memory goes
4208 below a certain limit.
4210 * niceload: --run-noswap will slow down a program if the computer is
4213 * niceload: --start-io, --start-load, --start-mem, --start-noswap will
4214 defer starting a program until the system is below the limit.
4216 * --io, --load, --mem, and --noswap sets both --run-* and --start-*.
4218 * niceload got a major rewrite and is now object oriented.
4220 * GNU Parallel was presented at Nordic Perl Workshop 2011.
4221 http://conferences.yapceurope.org/npw2011/talk/3416
4223 * Blog post about zcat and GNU Parallel. Thanks to Dr. John.
4224 http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/
4226 * 2 blog posts in Japanese. Thanks to Negima.
4227 http://d.hatena.ne.jp/negima1976/20110607/1307412660
4228 http://d.hatena.ne.jp/negima1976/20110628/1309252494
4230 * Blog post for bioinformatics. Thanks to Chris Miller.
4231 http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/
4233 * Bug fixes and man page updates.
4238 * --onall will run all the jobs on all the computers. This is useful
4239 for systemadinistrators having multiple servers.
4241 * --nonall runs like --onall but reads no arguments from stdin
4242 (standard input), so is possible to do:
4243 parallel --nonall -S computer1,computer2 uptime
4245 * Context replace now works with multiple input sources:
4246 parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c
4248 * --noswap do not start a job on a server that is swapping.
4250 * Article: Parallel processing without Hadoop!
4251 http://www.solutionhacker.com/parallel-processing-without-hadoop/
4253 * Article in Linux Magazine (Spanish). Thanks to Ben Martin.
4254 http://www.linux-magazine.es/issue/67/
4256 * First blog post in Korean. Thanks to 민병국.
4257 http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#
4259 * Blog post in Japanese. Thanks to Naoya Nakazawa.
4260 http://www.sssg.org/blogs/naoya/archives/2003
4262 * Blog post in English. Thanks to Dagon.
4263 http://hekate.homeip.net/2011/05/29/
4265 * Bug fixes and man page updates.
4270 * Multiple ::: can be put on the command line and will be treated
4271 similar to contents from multiple -a's.
4273 * ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
4274 refer to inputs from the different input sources.
4276 * --xapply is now needed to get xapply's behaviour of reading one line
4277 from each of the input sources.
4279 * Multiple input sources will cause all combinations of arguments from
4280 the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
4281 a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
4284 * Implemented {//} for the input line with the basename removed (dirname).
4286 * New video showing the new ::: and :::: input sources.
4287 http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc
4289 * GNU Parallel now has a logo.
4290 http://www.gnu.org/software/parallel/logo.png
4292 * Article about GNU SQL in USENIX Magazine ;login: (print)
4293 http://www.usenix.org/publications/login/2011-04/
4295 * Using GNU Parallel with EC2. Thanks to Kevin Wu.
4296 http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in
4298 * Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
4299 http://d.hatena.ne.jp/ichii386/20110426
4301 * Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
4302 http://www.hollenback.net/index.php/MacportsParallel
4304 * Robert from Echo One discusses using processes instead of threads:
4305 http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/
4307 * How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
4308 http://www.kevinstock.org/2011/04/using-the-ri-cluster/
4310 * Short article about using GNU Parallel with lame:
4311 http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion
4313 * Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
4314 http://blog.clouder.jp/archives/001140.html
4316 * BBC Research & Development uses GNU Parallel:
4317 http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml
4319 * Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
4320 http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/
4322 * Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
4323 http://derek.chezmarcotte.ca/?p=286
4325 * Bug fixes and man page updates.
4330 * {#} now works as an alias for $PARALLEL_PID.
4332 * --eta now estimates way more accurately.
4334 * CPU detection code for AIX thanks to Christian Netrwal.
4336 * --joblog contains exitcode.
4338 * Thanks to Ævar Arnfjörð Bjarmason for reading my code.
4340 * GNU Parallel was presented at:
4341 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4342 - OSAA.dk, Aarhus, 2011-04-12
4344 * Blog entry in Japanese. Thanks to Riywo.
4345 http://blog.riywo.com/2011/04/19/022802
4347 * Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
4348 J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel
4350 * First example of using GNU Parallel in Hebrew. Thanks to omry.
4353 * Intro video got past 10000 hits.
4354 http://www.youtube.com/watch?v=OpaiGYxkSuQ
4356 * Bug fixes and man page updates.
4361 * --tollef to be switch compatible with Tollef's parallel. This will
4362 cause -l to mean --load, and the argument separator will be --
4365 * --gnu will force GNU Parallel to behave like GNU Parallel even if
4368 * Site wide config file: /etc/parallel/config
4370 This should solve the issue with some packagers renaming GNU
4371 Parallel to gparallel to avoid the naming conflict.
4373 By putting --tollef in the site wide config file you can deinstall
4374 Tollef's parallel and install GNU Parallel instead without any
4375 change for users or scripts. This is useful for packagers that
4376 currently rename GNU Parallel or simply do not distribute GNU
4377 Parallel because the command name conflicts with Tollef's parallel.
4379 * -L 0 -n 0, and -N 0 implemented. They will read one argument,
4380 but insert 0 arguments on the command line. Useful if you just want
4381 to run the same command with the same arguments a number of times.
4383 * GNU Parallel is now in Fink. Thanks to Jesse Alama.
4384 http://pdb.finkproject.org/pdb/package.php/parallel
4386 * Opscode Cookbook for Chef. Thanks to Joshua Timberman.
4387 https://github.com/opscode/cookbooks/tree/master/gnu_parallel
4389 * Man page examples translated into Japanese. Thanks to Koshigoe.
4390 http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13
4392 * GNU Parallel will be presented at:
4393 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4394 - OSAA.dk, Aarhus, 2011-04-12
4396 * Video of presentation from FSCONS 2010-11-07. The presenter was
4397 _really_ hoarse that day (Something to do with loads of alcohol the
4398 night before). http://vimeo.com/20838834
4400 * Review with examples in German. Thanks to M. Nieberg.
4401 http://kenntwas.de/2011/linux/gnu-parallel/
4403 * A review of the --pipe option in German. Thanks to Mathias Huber.
4404 http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten
4406 * A small example of grepping maillogs. Thanks to François Maillet.
4407 http://www.francoismaillet.com/blog/?p=399
4409 * Using GNU Parallel instead of xargs. Thanks to James Cuff.
4410 http://blog.jcuff.net/2011/02/on-train-ride-in.html
4412 * Bug fixes and man page updates.
4417 * --pipe splits piped data into blocks. Each block is piped to a
4418 program for processing. The piping and the programs will be run in
4419 parallel. Useful if the data you want to process is data for a
4420 program and not arguments.
4422 * --blocksize sets the blocksize in bytes for --pipe. The blocksize is
4423 approximate. It can deviate as much as the size of one record.
4426 * --recstart sets the string matching the start of a
4427 record. Default is "".
4429 * --recend sets the string matching the end of a
4430 record. Default is '\n'. To specify none use --recend "".
4432 If both --recstart and --recend are set, the end of a record must be
4433 followed immediately by a start of a record. This is useful if
4434 either recend or recstart can occur in the middle of a record.
4436 * --remove-rec-sep removes the string matched by --recstart and
4439 * --regexp will make GNU Parallel treat --recstart and --recend as
4440 regular expressions.
4442 * --output-as-files will put the output of the programs into files and
4443 instead of giving the output GNU Parallel will output the name of
4446 * -N if used with --pipe sets the number of records to read.
4448 * New video showing --pipe at
4449 http://www.youtube.com/watch?v=1ntxT-47VPA
4451 * GNU Parallel was presented at FOSDEM.
4453 * Article in USENIX Magazine ;login: (print)
4454 http://www.usenix.org/publications/login/2011-02/
4456 * GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
4457 https://www.ohloh.net/p/gnu-parallel
4459 * Advanced recursive example. Thanks to Ruarí Ødegaard.
4460 http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu
4462 * Small example on using GNU Parallel through 0install (German).
4463 http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/
4465 * Bug fixes and man page updates.
4470 * --joblog makes a simple log of completed jobs.
4472 * -X now spreads arguments between job slots when reaching last
4473 argument. Use -j1 to avoid this.
4475 * People on the email list have voted -j+0 to be the new default
4478 * First review in Polish. Thanks to Patryk Krawaczyński.
4479 http://nfsec.pl/root/2458
4481 * Review in Spanish (in print).
4482 https://www.linux-magazine.es/issue/67/moreinfo.html
4484 * Review in English. Thanks to Brian Gough.
4485 http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/
4487 * Review in French. Thanks to Denis Dordoigne.
4488 http://linuxfr.org/2010/12/29/27715.html
4490 * Review in Spanish.
4491 http://gufete.net/index.php?entry=entry110116-200022
4493 * Article with advanced recursive example. Thanks to Ruarí Ødegaard
4494 http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel
4496 * Use case for memcache.
4497 http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/
4499 * Bug fixes and man page updates.
4504 * GNU niceload is now part of GNU Parallel. GNU niceload slows down a
4505 program if the load average is above a certain limit.
4507 * Implemented --tmpdir to buffer standard output and standard error in
4510 * Implemented --load to wait until the load is below a limit before
4511 starting another job on that computer.
4513 * Implemented --nice set the niceness of jobs running both locally and
4516 * Implemented --dry-run to print the job without running it.
4518 * Implemented --tty as the old default of assigning a tty to the first
4519 job causes problems.
4521 * Review with focus on clusters. Thanks to Taylor Gillespie
4522 http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html
4524 * Review with focus on protein similarity.
4525 http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel
4527 * Review in Spanish.
4528 http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux
4530 * Quite a few bug fixes and man page updates.
4535 * Implemented {/} for the input line with the path removed (basename).
4537 * Implemented {/.} for the input line with extension and path removed
4540 * Output from --progress is now sent to standard error instead of
4543 * --eta was broken and counted down from 0. Now fixed.
4545 * Standard output and standard error are flushed after every job so if
4546 standard output does not end with a newline it will still be grouped
4547 with the rest of standard output.
4549 * --command, -c, --file, and -f are now removed as options. They were
4550 never used in practice.
4552 * GetOptionsFromArray rewritten to work with old Perl libraries.
4554 * The file COPYING now contains the GNU General Public License 3
4556 * Major rewrite to make the code more object oriented and easier to
4557 maintain in the future.
4562 * Using -j myfile the number of jobs can be changed while GNU Parallel
4563 is running simply by changing the content of myfile.
4565 * Implemented --profile to use different .parallel/config for
4566 different situations.
4568 * Ugly newlines in $PARALLEL and .parallel/config are no longer
4569 needed. Instead you have to use \ in front of special shell
4572 * --workdir puts the files transferred to remote machines in a
4573 specified directory.
4575 * $PARALLEL_PID is set to the process id of GNU Parallel.
4577 * $PARALLEL_SEQ is set to the sequence number of the job.
4579 * -v now only shows the command to run. Use -v -v to show the
4582 * Slow spawning error is now only a warning.
4584 * If stdin is a tty and input is read from stdin you now get a
4587 * GNU sql: \n and \x0a in arguments is replaced with newline.
4589 * Patch for Debian package and spelling mistakes. Thanks to Rogério
4590 Brito <rbrito at ime dot usp dot br>
4592 * Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
4593 palardy at gmail dot com>
4595 * FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>
4597 * Pardus package. Thanks to Fethican Coşkuner
4598 <fethicanc at gmail dot com>
4600 * First review in Chinese. Thanks to 曾義峰:
4601 http://antbsd.twbbs.org/~ant/wordpress/?p=2876
4603 * First review in print:
4604 http://www.linux-magazine.com/Issues/2010 Nov 2010
4606 * First review in Spanish:
4607 http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando
4609 * First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
4611 http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html
4613 * Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
4614 http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life
4616 * 5000 views of the intro video:
4617 http://www.youtube.com/watch?v=OpaiGYxkSuQ
4619 * As usual a bunch of bugfixes and more usage examples in the man
4622 * GNU Parallel was presented at FSCONS 2010-11-07:
4623 http://www.fscons.org/fs/gnu-parallel Hopefully the
4624 video will be online soon.
4629 * See GNU Parallel live at FSCONS 2010-11-07:
4630 http://www.fscons.org/fs/gnu-parallel
4632 * Untested Debian and xUbuntu packages available through OpenSUSE
4634 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
4636 * Using --retries a job will be retried on another computer if it
4637 fails. This is useful if some jobs fail for no apparent reason (such
4638 as network failure).
4640 * BSD xargs -o (open /dev/tty) is now default for the job running in
4641 foreground. Useful for interactive commands like:
4642 ls | parallel -Xuj1 vi
4644 * GNU sql now supports SQLite.
4646 * Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.
4648 * GNU sql now support --list-tables
4650 * Alias for DBURL can contain '?query' part with %-quoting.
4655 * Using --shebang GNU Parallel can be used as the parser for a script.
4656 E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
4659 * First community generated bugfixes
4661 * Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
4662 at altlinux dot org>
4664 * Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
4665 <sunfreeware at gmail.com>
4667 * Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
4668 available through OpenSUSE build service:
4669 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
4671 * Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
4672 http://www.andrew-mcfague.com/linux/utilities-linux/
4673 commands-every-serious-nix-user-should-know/#parallel
4675 * First 1000 views of the intro video
4677 * sql - a small script to access sql bases from the command line which
4678 is a handy companion to parallel --colsep
4683 * Counting semaphore functionality: start a job in the background. If
4684 N jobs are already running, wait for one to complete. Examples:
4685 sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
4686 sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait
4688 * With --colsep a table can be used as input. Example:
4689 cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}
4691 * --trim can remove white space around arguments.
4693 * --sshloginfile '..' means use ~/.parallel/sshloginfile
4695 * Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
4698 * OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
4701 * NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>
4703 * Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
4704 Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>
4706 * Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
4707 Thanks to Phil Sung <psung at alum dot mit dot edu>
4712 * Arguments can now be given on the command line. Example:
4713 parallel bzip2 ::: *.txt
4715 * xapply like functionality. Example:
4716 parallel diff {1} {2} :::: filelist1 filelist2
4717 parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2
4719 * Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>
4721 * Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
4724 * -L -l -n -s now implies -X unless -m is set
4729 * New video showing the new options.
4730 http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
4731 http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/
4733 * 100% options complete with xargs. All options for xargs can now be
4734 used in GNU Parallel - even the more exotic.
4736 * --basefile for transferring basedata. When running jobs on remote
4737 computers --basefile will transfer files before the first jobs is
4738 run. It can be used to transfer data that remains the same for each
4739 job such as scripts or lookup tables.
4741 * --progress shows progress. To see how many jobs is running on each
4742 server use --progress. It can be turned on even after GNU Parallel
4745 * --eta shows estimated time left in seconds.
4747 * --halt-on-error stops if an error occurs. GNU Parallel will default
4748 to run all jobs - even if some of them fail. With --halt-on-error
4749 GNU Parallel can ignore errors, wait for the currently running jobs
4750 to finish, or stop immediately when an error occurs.
4755 * GNU Parallel now has support for running jobs on remote machines
4757 * Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
4758 http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech
4763 * GNU Parallel is now official GNU software