5 * Better support for wide characters in --latest-line.
7 * Support for rsync 3.2.7.
9 * Bug fixes and man page updates.
16 * parsort: --parallel now does closer to what you expect.
18 * parallel: --files0 is --files but \0 separated.
20 * Bug fixes and man page updates.
22 News about GNU Parallel:
24 * 5 great Perl scripts to keep in your sysadmin toolbox
25 https://www.redhat.com/sysadmin/perl-scripts
32 * Bug fixes and man page updates.
34 News about GNU Parallel:
36 * The Best Ethical Hacking Tools of 2023 (and their basic usage)
37 https://www.purevpn.com/blog/the-best-hacking-tools-of-2023/#11_GNU_Parallel
39 * GNU Parallel: criando atividades em paralelo com shell script
40 https://www.vivaolinux.com.br/artigo/GNU-Parallel-criando-atividades-em-paralelo-com-shell-script/
47 * --results works on more file systems (e.g. fat)
49 * Joblog gives the same exit code as bash.
51 News about GNU Parallel:
53 * Programação Shell Linux: Paralelismo de processos com GNU parallel
54 https://www.youtube.com/watch?v=duheTWLIrp8
56 * Talk Python: Data Science from the Command Line
57 https://talkpython.fm/episodes/show/392/data-science-from-the-command-line
64 * Support for IPv6 adresses and _ in hostnames in --sshlogin.
66 * Use --total-jobs for --eta/--bar if generating jobs is slow.
68 * A lot of bugs fixed in --latest-line.
70 * Better support for MSYS2.
72 * Better Text::CSV error messages.
74 * --bar supports UTF8.
76 * Bug fixes and man page updates.
78 News about GNU Parallel:
80 * GNU Parallel is now on Mastodon: @GNU_Parallel@hostux.social
87 * --latest-line chops line length at terminal width.
89 * Determine max command length faster on Microsoft Windows.
91 News about GNU Parallel:
93 * Distributed Task Processing with GNU Parallel
94 https://www.youtube.com/watch?v=usbMLggdMgc
96 * GNU Parallel workflow for many small, independent runs
97 https://docs.csc.fi/support/tutorials/many/
99 * Copy a File To Multiple Directories With A Single Command on Linux
100 https://www.linuxfordevices.com/tutorials/linux/copy-file-to-multiple-directories-with-one-command
102 * Behind The Scenes: The Power Of Simple Command Line Tools At Cloud
104 https://blog.gdeltproject.org/behind-the-scenes-the-power-of-simple-command-line-tools-at-cloud-scale/
106 * Run lz4 compression in parallel using GNU parallel
107 https://www.openguru.com/2022/09/
109 * Xargs / Parallel With Code Examples
110 https://www.folkstalk.com/2022/09/xargs-parallel-with-code-examples.html
112 * Parallel processing on a single node with GNU Parallel
113 https://www3.cs.stonybrook.edu/~cse416/Section01/Slides/SeaWulfIntro_CSE416_09222022.pdf
115 * Using GNU parallel painlessly -- from basics to bioinformatics job
116 orchestration https://www.youtube.com/watch?v=qypUdm-IE9c
123 * --colour-failed only changes output for failing jobs.
125 * Password for --sshlogin can be put in $SSHPASS.
127 * Examples are moved from `man parallel` to `man parallel_examples`.
129 * Bug fixes and man page updates.
131 News about GNU Parallel:
133 * WOMM - Works On My Machine uses GNU Parallel https://pypi.org/project/womm/
140 * --header 0 allows using {filename} as replacement string
142 * Bug fixes and man page updates.
149 * --colour-failed will color output red if the job fails.
151 * sql: support for InfluxDB.
153 * Polarhome.com is dead, so these OSs are no longer supported: AIX
154 HPUX IRIX Minix OPENSTEP OpenIndiana OpenServer QNX Solaris Syllable
155 Tru64 Ultrix UnixWare.
157 * Bug fixes and man page updates.
164 * , can be used in --sshlogin if quoted as \, or ,,
166 * --plus {/#regexp/str} replace ^regexp with str.
168 * --plus {/%regexp/str} replace regexp$ with str.
170 * --plus {//regexp/str} replace every regexp with str.
172 * 'make install' installs bash+zsh completion files.
174 * Bug fixes and man page updates.
181 * --latest-line shows only the latest line of running jobs.
183 * --color colors output in different colors per job (this obsoletes --ctag).
185 * xargs compatibility: --process-slot-var foo sets $foo to jobslot-1.
187 * xargs compatibility: --open-tty opens the terminal on stdin (standard input).
189 * Bug fixes and man page updates.
191 News about GNU Parallel:
193 * Building a fault-tolerant work queue for command-line executions
194 with GNU Parallel https://www.jvt.me/posts/2022/04/28/shell-queue/
196 * Make your code do more, with less
197 https://www.blopig.com/blog/2022/05/make-your-code-do-more-with-less/
199 * W09 B IntroHPC II 20220513 gnu parallel
200 https://www.youtube.com/watch?v=2udvC90rIa4
207 * sash is no longer supported as shell.
209 * --retries 0 is an alias for --retries 2147483647.
211 * --shell-completion returns shell completion code.
213 * --ssh-login-file reloads every second.
215 * --parset is replaced with --_parset because it is only used internally.
217 * sem --pipe passes STDIN (standard input) to the command.
219 * Bug fixes and man page updates.
226 * --sshlogin user:password@host is now supported by using sshpass.
228 * Bug fixes and man page updates.
230 News about GNU Parallel:
232 * Bash: GNU Parallel with Curl
233 https://gist.github.com/CMCDragonkai/5914e02df62137e47f32?permalink_comment_id=2617456
235 * The Pipe Operator Explained
236 https://medium.com/geekculture/the-pipe-operator-explained-cbd41e23775a
243 * Encoding of remote commands has changed. This limits the length of
244 remote commands to less than half. It also requires $REMOTE_TMPDIR
245 to be writable. It makes this release beta quality.
247 * Time functions hh_mm_ss() hhmmss() hh_mm() hhmm() are now available
250 * Many options in the man page for parallel now has 'see also' for
253 * parallel_options_map.pdf is a map showing which options other
256 * {uniq} added to --plus to only run jobs with unique values.
258 * sem --fg exits with the exit code of the job.
260 * Bug fixes and man page updates.
267 * GNU Parallel turned 20 on the 2022-01-06
268 https://www.gnu.org/software/parallel/20th-birthday.html
270 * Bug fixes and man page updates.
272 News about GNU Parallel:
274 * Save Time with Modern Search Techniques
275 https://www.eventbrite.com/e/ohio-information-security-forum-january-2022-monthly-meeting-tickets-240632737997
277 * Bash "Fail immediately if any fails"
278 https://morioh.com/p/a01b883dc57c
280 * Re-encoding the EmacsConf videos with FFmpeg and GNU Parallel
281 https://sachachua.com/blog/2021/12/re-encoding-the-emacsconf-videos-with-ffmpeg-and-gnu-parallel/
283 * Bash 平行 https://learntutorials.net/ja/bash/topic/10778/%E5%B9%B3%E8%A1%8C
290 * Bug fixes and man page updates.
292 News about GNU Parallel:
294 * The first version of Parallel will be 20 years on 2022-01-06
296 * HerrComp Intro HPC gnu parallel
297 https://www.youtube.com/watch?v=tcgjKWfgWQY
300 https://qiita.com/toramili/items/44a770cfb9ef1edc9e26
302 * How To Install parallel on Ubuntu 20.04
303 https://installati.one/ubuntu/20.04/parallel/
305 * Distributing embarrassingly parallel tasks GNU Parallel
306 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
313 * Bug fixes and man page updates.
315 News about GNU Parallel:
317 * Otimizando o seu Hacking com o GNU Parallel - Mateus Buogo
318 https://www.youtube.com/watch?v=xIpPPZXDKGU
320 * SMACK 12 - Do it faster! Simple ways to use all those cores (and
321 GPUs) efficiently. https://www.youtube.com/watch?v=lXDGY7NvOYk
328 * Don't postpone output until $jobslots jobs have been started.
330 * Bug fixes and man page updates.
332 News about GNU Parallel:
334 * How to Install GNU Parallel using Anaconda | Linux
335 https://www.youtube.com/watch?v=UwDNVP-L0qA
337 * Install GNU Parallel from source code | Linux
338 https://www.youtube.com/watch?v=PIyJH4ben5o
340 * Compiling GNU Parallel on CentOS-7
341 https://thelinuxcluster.com/2021/10/19/compiling-gnu-parallel-on-centos-7/
348 * Bug fixes and man page updates.
350 News about GNU Parallel:
352 * 3 Programs that will Level Up your Bash Game
353 https://medium.com/codex/3-programs-that-will-level-up-your-bash-game-bf14e17e2291
355 * I Summarized 100+ Command-Line Tools for Data Scientists in 15
357 https://towardsdatascience.com/i-summarized-100-command-line-tools-for-data-scientists-in-15-minutes-976def544ffe
359 * Speed up Your Builds by Parallelizing
360 https://www.incredibuild.com/blog/speed-up-your-builds-by-parallelizing
362 * Bash: GNU Parallel with Curl
363 https://gist.github.com/dinh/93b936a55de9a331199d6582bc2921d2
370 * --ctag/--ctagstring colors the tag in different colors for each job.
372 * You can use unit prefixes (k, m, g, etc) with -n -N -L.
374 * Bug fixes and man page updates.
376 News about GNU Parallel:
378 * Parallelising jobs with GNU parallel
379 https://blog.ronin.cloud/gnu-parallel/
381 * Use multiple CPU Cores with your Linux commands - awk, sed, bzip2,
382 grep, wc, etc. https://cdmana.com/2021/07/20210728132344693t.html
384 * How to execute commands in parallel in Linux
385 https://net2.com/how-to-execute-commands-in-parallel-in-linux/
392 * --results no longer prints the result to standard output (stdout) as
394 https://lists.gnu.org/archive/html/parallel/2020-12/msg00003.html
396 * parset supports associative arrays in bash, ksh, zsh.
398 * Online HTML is now generated by Sphinx.
400 * Bug fixes and man page updates.
402 News about GNU Parallel:
404 * Cleaning Up Scanned Documents with Open Source Tools
405 https://kaerumy.medium.com/cleaning-up-scanned-documents-with-open-source-tools-9d87e15305b
412 * Bug fixes and man page updates.
414 News about GNU Parallel:
416 * How to use GNU Parallel
417 https://techtipbits.com/linux/how-to-use-gnu-parallel/
419 * How to Speed Up Bash Scripts with Multithreading and GNU Parallel
420 https://adamtheautomator.com/how-to-speed-up-bash-scripts-with-multithreading-and-gnu-parallel/
422 * Use Parallel to split by line
423 https://madflex.de/use-parallel-to-split-by-line/
425 * Optimizing long batch processes or ETL by using buff/cache properly
426 II (parallelizing network operations)
427 http://www.elsotanillo.net/2021/06/optimizing-long-batch-processes-or-etl-by-using-buff-cache-properly-ii-parallelizing-network-operations/
429 * Parallelization 3: GNU Parallel https://www.youtube.com/watch?v=Rl06WD60afA
436 * --plus includes {%%regexp} and {##regexp}.
438 * Bug fixes and man page updates.
440 News about GNU Parallel:
442 * Batch Calculate and Verify MD5 Checksum With GNU Parallel
443 https://omicx.cc/posts/2021-04-28-calculate-and-verify-md5-checksum-with-gnu-parallel/
445 * HerrComp Gnu parallel, c++11 threads 2021 04 28
446 https://www.youtube.com/watch?v=wDd9F9nn0qA
448 * Distributing embarrassingly parallel tasks GNU Parallel
449 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
451 * Job Parallelization on Niagara
452 https://www.maryamdaryalal.com/post/job-parallelization-on-niagara
454 * Use Parallel to split by line
455 https://madflex.de/use-parallel-to-split-by-line/
457 * m1 multi-core batch convert with gpu parallel + ffmpeg
458 https://www.youtube.com/watch?v=hAuc0YsXv6A
465 * Bug fixes and man page updates.
467 News about GNU Parallel:
469 * Bioinformatics tutorials - linux and shell advanced - parallel
470 https://www.youtube.com/watch?v=5leL8pyl0XA
472 * GNU Parallel for quick gains
473 https://edbennett.github.io/high-performance-python/04-gnu-parallel/index.html
475 * Processing Linux Commands in Parallel
476 https://www.baeldung.com/linux/processing-commands-in-parallel
479 https://docs-research-it.berkeley.edu/services/high-performance-computing/user-guide/running-your-jobs/gnu-parallel/
481 * GNU Parallel 활용 가이드https://genoglobe.com/kribb/gnu_parallel
483 * Parallel Grep and Awk
484 https://www.highonscience.com/blog/2021/03/21/parallel-grep/
486 * Getting things done with shell scripting
487 https://doma.dev/blog/get-things-done-with-bash/
492 * Bug fixes and man page updates.
494 News about GNU Parallel:
496 * The very first version of Parallel dated 2002-01-06 was found in an
507 (".PHONY : job$jobnr\n",
511 unshift @makefile, "all : ",(map { "job$_ " } 1 .. $jobnr),"\n";
513 open (MAKE, "| make -k -f - -j $processes") || die;
514 print MAKE @makefile;
517 * Introduction to GNU Parallel
518 https://www.youtube.com/watch?v=Kj-6JkAqw-8
520 * Using GNU Parallel with GooseSLURM
521 https://readthedocs.org/projects/gooseslurm/downloads/pdf/latest/#chapter.7
524 https://github.com/lijingbu/omics/blob/main/why_gnu_parallel.md
529 * --filter only run jobs where the filter is true. The filter can
530 contain replacement strings and Perl code such as: '{1} < {2}+1'
532 * --template takes a text file as a template with replacement
533 strings. Then it replaces the replacement strings and saves it
534 under a new filename.
536 * --plus implements {0%} {0#} replacement string for zero padded slot
539 * Warn that you probably mean -d '\r\n' if the first 3 values end in
542 * {= perlexpression =} must return the same value, if run twice on the
545 * Man pages available as .rst-format.
547 * Bug fixes and man page updates.
549 News about GNU Parallel:
551 * A short tutorial on Gnu Parallel
552 https://www.polarmicrobes.org/a-short-tutorial-on-gnu-parallel/
554 * 5 reasons why I love coding on Linux
555 https://opensource.com/article/21/2/linux-programming
557 * Simple Tutorial to install & use GNU Parallel
558 https://medium.com/analytics-vidhya/simple-tutorial-to-install-use-gnu-parallel-79251120d618
560 * LiDO3 - first contact
561 https://www.lido.tu-dortmund.de/cms/de/LiDO3/LiDO3_first_contact_handout.pdf
563 * Rill Stage 2-1: Ways of command-line data analysis
564 https://blog.jastix.biz/post/rill-stage-2-1-cli-data-analysis/
566 * Introduction to GNU Parallel
567 https://blog.knoldus.com/introduction-to-gnu-parallel/
569 * GNU Parallel https://www.hahwul.com/cullinan/parallel/
574 * --memsuspend suspends jobs when there is little memory free. This
575 way you can run jobs in parallel that added up potentially will take
576 up more RAM than is available.
578 * $PARALLEL_ARGHOSTGROUPS and the replacement string {agrp} will give
579 the hostgroup given on the argument when using --hostgroup.
581 * Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss()
582 yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm()
583 yyyymmdd() hash($str)
585 * Bug fixes and man page updates.
587 News about GNU Parallel:
589 * Software Engineering For Scientists
590 https://canvas.stanford.edu/courses/133091
592 * Optional Individual Submission 4 Job Handling - GNU Parallel
593 https://www.youtube.com/watch?v=-tX0bFAYAxM
595 * 关于gnu parallel:GnuParallel:在集群上并行化脚本,脚本将文件写入主
596 节点https://www.codenong.com/25172209/
599 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
604 * --pipe engine changed making --pipe alpha quality.
606 * --results -.json outputs results as JSON objects on stdout (standard
609 * --delay 123auto will auto-adjust --delay. If jobs fail due to being
610 spawned too quickly, --delay will exponentially increase.
612 * --plus sets {hgrp} that gives the intersection of the hostgroups of
613 the job and the sshlogin that the job is run on.
615 * Bug fixes and man page updates.
617 News about GNU Parallel:
619 * Best practices for accelerating data migrations using AWS Snowball
621 https://aws.amazon.com/blogs/storage/best-practices-for-accelerating-data-migrations-using-aws-snowball-edge/
623 * Pass the Output of a Command as an Argument for Another
624 https://www.baeldung.com/linux/pass-cmd-output-as-an-argument
626 * Warwick RSE Drop-in - Workflow Management Part 2 - GNU Parallel
627 https://www.youtube.com/watch?v=t_v2Otgt87g
632 * Bug fixes and man page updates.
634 News about GNU Parallel:
636 * https://bash-prompt.net/guides/gnu-parallel-multi-server/
641 * --termseq now works for jobs running remotely.
643 * parsort: Performance optimized for 64-core machines.
645 * Bug fixes and man page updates.
647 News about GNU Parallel:
649 * Juan Sierra Pons has made a testimonial:
650 http://www.elsotanillo.net/wp-content/uploads/GnuParallel_JuanSierraPons.mp4
652 * 「翻译」在生物信息学中使用 GNU-Parallel
653 https://cloud.tencent.com/developer/article/1705499
658 * New CPU detection for GNU/Linux.
660 * Bug fixes and man page updates.
662 News about GNU Parallel:
664 * Aug 21, 2020 - More Unix tools
665 https://floki.blog/2020/08/more_unix_tools
672 * Max command line length is changed for MacOS - making this version
673 beta quality for MacOS.
675 * Bug fixes and man page updates.
682 * No new functionality
684 * Bug fixes and man page updates.
686 News about GNU Parallel:
688 * Tips for Running Jobs on your VM
689 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
691 * Introduction to GNU Parallel: Parallelizing Massive Individual Tasks
692 https://www.youtube.com/watch?v=QSFLTEyCKvo
695 http://www.hpc.lsu.edu/training/weekly-materials/2020-Spring/GNUParallel_Spring_2020.pdf
697 * Linux-Fu: Parallel Universe
698 https://hackaday.com/2020/06/29/linux-fu-parallel-universe/
700 * Resumable batch jobs with gnu parallel https://igor.io/parallel/
702 * Introducing Parallel into Shell
703 https://www.petelawson.com/post/parallel-in-shell/
705 * AV1 encoding parallelization with GNU Parallel
706 https://www.reddit.com/r/AV1/comments/fjvqp9/av1_encoding_parallelization_with_gnu_parallel/
708 * Beschleunigte Befehlsbearbeitung mit GNU Parallel
709 https://www.linux-community.de/ausgaben/linuxuser/2013/06/beschleunigte-befehlsbearbeitung-mit-gnu-parallel/
716 * No new functionality
718 * Bug fixes and man page updates.
720 News about GNU Parallel:
722 * GNU Parallel is used at NERSC:
723 https://www.nersc.gov/assets/Uploads/08-Workflows-20200616.pdf
725 * Resumable batch jobs with GNU Parallel https://igor.io/parallel/
727 * Lab Meeting technical talk
728 https://www.slideshare.net/hoffmanlab/gnu-parallel-194030490
730 * Open Sky Software Website Credits
731 https://www.openskysoftware.com/site-credits.htm
733 * Speed up your Python Scripts using Ubuntu and GNU Parallel
734 https://ecce.esri.ca/wpecce/2019/12/24/speed-up-your-python-scripts-using-ubuntu-and-gnu-parallel/
736 * Indispensable command-line tools
737 https://negfeedback.blogspot.com/2020/05/indispensable-command-line-tools.html
739 * GNU Parallel for simulations
740 http://pdebuyl.be/blog/2020/gnu-parallel-for-simulations.html
742 * Introduction to GNU parallel
743 https://bioinformaticsworkbook.org/Appendix/GNUparallel/GNU_parallel_examples.html
750 * While running a job $PARALLEL_JOBSLOT is the jobslot of the job. It
751 is equal to {%} unless the job is being retried. See {%} for
754 * While running a job $PARALLEL_SSHLOGIN is the sshlogin line with
755 number of cores removed. E.g. '4//usr/bin/specialssh user@host'
756 becomes: '/usr/bin/specialssh user@host'
758 * While running a job $PARALLEL_SSHHOST is the host part of an
759 sshlogin line. E.g. '4//usr/bin/specialssh user@host' becomes:
762 * --plus activates the replacement strings {slot} = $PARALLEL_JOBSLOT,
763 {sshlogin} = $PARALLEL_SSHLOGIN, {host} = $PARALLEL_SSHHOST
765 * Bug fixes and man page updates.
767 News about GNU Parallel:
769 * Portable Batch System (PBS) & GNU Parallel - Running a Program
770 Multiple Times in Parallel
771 https://www.youtube.com/watch?v=6ccbWu6Befo
773 * GNU Parallel przykład https://www.youtube.com/watch?v=gs_wG4Kt2G4
775 * Demo of LINUX APP - GNU PARALLEL - running multiple Gstreamer webcam
776 .sh scripts with only 1 command
777 https://www.youtube.com/watch?v=trQuA_wmWjg
782 This release celebrates GNU Parallel's 10 years as a GNU tool:
784 > commit ed2dfb1043768154d4e7678e01e10287155fa834
785 > Author: Ole Tange <ole@tange.dk>
786 > Date: Thu Apr 22 01:23:00 2010 +0200
788 > Name change: Parallel is now GNU Parallel.
789 > Basic structure for sshlogin and sshloginfile.
793 * parsort makes GNU sort run faster for files with more than 1M lines.
795 * Bug fixes and man page updates.
797 News about GNU Parallel:
799 * Several clusters have updated their documentation of GNU Parallel:
800 https://www.grid5000.fr/w/GNU_Parallel
801 https://research-it.berkeley.edu/virtual-training-running-jobs-parallel-savio
802 http://www.hpc.lsu.edu/training/archive/tutorials.php
804 * add_pho uses GNU Parallel: https://github.com/SeedlingsBabylab/add_pho
806 * GNU parallel使用笔记https://zhuanlan.zhihu.com/p/37340011
808 * Virtual Workshop: Running Jobs in Parallel on Savio
809 https://ais.berkeley.edu/events/virtual-workshop-running-jobs-parallel-savio/2020-04-20
811 * Free Concurrency with GNU Parallel
812 https://phili.pe/posts/free-concurrency-with-gnu-parallel/
817 * Bug fixes and man page updates.
819 News about GNU Parallel:
821 * The GNU Parallel course in Copenhagen is cancelled
822 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
824 * The GNU Parallel course in Århus is cancelled
825 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
827 * The 10 year anniversary may be cancelled, see
828 https://www.gnu.org/software/parallel/10-years-anniversary.html
830 * Running shell commands in parallel, via GNU Parallel
831 https://dev.to/saveriomiroddi/running-shell-commands-in-parallel-via-gnu-parallel-3a72
833 * Faster nmap scanning with the help of GNU parallel
834 https://badshah.io/experiment/faster-nmap-scanning-with-the-help-of-gnu-parallel/
839 * Bug fixes and man page updates.
844 * --blocktimeout dur - Time out for reading block when using
845 --pipe. If it takes longer than dur to read a full block, use the
846 partial block read so far.
848 * Bug fixes and man page updates.
850 News about GNU Parallel:
852 * GNU Parallel course in Copenhagen
853 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
855 * GNU Parallel course in Århus
856 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
858 * GNU Parallel pour accélérer vos process sous Linux
859 https://www.yvonh.com/gnu-parallel-pour-accelerer-vos-process-sous-linux/
861 * How to copy a file to multiple directories in Linux
862 https://net2.com/how-to-copy-a-file-to-multiple-directories-in-linux/
864 * Running linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
869 * GNU Parallel course in Copenhagen
870 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
872 * GNU Parallel course in Århus
873 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
875 * GNU Parallel is used in
876 https://github.com/JeffersonLab/rfw_tsf_extractor
878 * Bug fixes and man page updates.
883 * GNU Parallel was presented at Driving IT. Slides:
884 cloud.prosa.dk/s/drivingit
886 * Restarting supervisord processes in parallel
887 https://blog.naderman.de/2019/11/14/restarting-supervisord-processes-in-parallel/
889 * Using GNU Parallel to Create Archives Faster
890 https://www.reddit.com/r/DataHoarder/comments/dsgmhc/parallel_archiving_techniques/
892 * Bug fixes and man page updates.
897 * --tee will use --output-error=warn-nopipe if supported by tee.
899 * GNU Parallel will be presented at Driving IT 2019:
900 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
902 * UMN Duluth: Job parallelization with task arrays and GNU parallel
903 https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
905 * Genome updater uses GNU Parallel
906 https://github.com/pirovc/genome_updater
908 * Using GNU-Parallel for bioinformatics
909 https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
911 * Speeding up PostgreSQL ETL pipeline with the help of GODS
912 https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
914 * Runing linux commands in parallel
915 https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
917 * Research Computing University of Colorado Boulder contains an intro
919 https://readthedocs.org/projects/curc/downloads/pdf/latest/
921 * 如何使用Parallel在Shell中并行执行命令
922 https://www.myfreax.com/gnu-parallel/
924 * 如何测试 Amazon Elastic File System
925 https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
927 * Bug fixes and man page updates.
932 * --nice is now inherited by the nice level that GNU Parallel is
933 started at. So 'nice -n10 parallel' will also cause remote jobs to
934 be run at nice level 10.
936 * --delay is now accurate to within 10 ms
938 * GNU Parallel will be presented at Driving IT 2019:
939 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
941 * Greenland Ice Sheet solid ice discharge from 1986 through 2017
942 https://www.earth-syst-sci-data.net/11/769/2019/essd-11-769-2019.pdf
944 * App Center Cloud Build Machines > Installed Software > Utilities
945 https://docs.microsoft.com/en-us/appcenter/build/software
947 * Curryfinger - SNI & Host header spoofing utility
948 https://dualuse.io/blog/curryfinger/
951 https://wiki.cac.washington.edu/display/hyakusers/Hyak+parallel-sql
953 * A meditation on analysing data with Perl in parallel using GNU Parallel
954 https://www.reddit.com/r/perl/comments/cyo2qc/a_meditation_on_analysing_data_with_perl_in/
956 * Accélérer ses tâches avec GNU Parallel et les lots de tâches (UL)
957 https://www.eventbrite.ca/e/inscription-accelerer-ses-taches-avec-gnu-parallel-et-les-lots-de-taches-ul-71412840729
959 * RMACC Summit GNU Parallel
960 https://curc.readthedocs.io/en/latest/software/GNUParallel.html
962 * Introducing Parallel into Shell
963 https://petelawson.com/post/parallel-in-shell/
965 * Linux Productivity Tools
966 https://www.usenix.org/conference/lisa19/presentation/maheshwari
968 * Gnu/parallel + Nfs 实现共享文件网络的并发计算等操作
969 http://atomicer.cn/2018/01/18/gnu-parallel-nfs-%E5%AE%9E%E7%8E%B0%E5%85%B1%E4%BA%AB%E6%96%87%E4%BB%B6%E7%BD%91%E7%BB%9C%E7%9A%84%E5%B9%B6%E5%8F%91%E8%AE%A1%E7%AE%97%E7%AD%89%E6%93%8D%E4%BD%9C/#more
971 * Bug fixes and man page updates.
976 * GNU Parallel will be presented at Driving IT 2019:
977 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it#beskrivelse
979 * Linux Productivity Tools
980 https://www.usenix.org/conference/lisa19/presentation/maheshwari
982 * Improve your reconnaissance performance by using GNU Parallel
983 https://mailchi.mp/3f46ceb46357/improve-your-reconnaissance-performance-by-using-gnu-parallel
985 * Paralel İşler / İşlemler / Programlar Bash’de Nasıl Çalıştırılır?
986 https://kaleinfo.com/2019/07/29/paralel-isler-islemler-programlar-bashde-nasil-calistirilir-2/
988 * Use POLYBAR to change WALLPAPER with GNU Parallel
989 https://www.youtube.com/watch?v=rjYg-b_eiRU
991 * Finding the Balance Between Speed & Accuracy During an Internet-wide
993 https://captmeelo.com/pentest/2019/07/29/port-scanning.html
995 * GNU Parallel Ryugu released
996 https://linuxreviews.org/GNU_Parallel_Ryugu_released
998 * CO2017 - CW1 - Operating Systems & Networks - Shell scripting
999 http://www.7daixie.com/2019071646302396.html
1001 * Bug fixes and man page updates.
1006 * {= uq; =} causes the replacement string to be unquoted. Example:
1007 parallel echo '{=uq;=}.jpg' ::: '*'
1009 * --tagstring {=...=} is now evaluated for each line with --linebuffer.
1011 * Use -J ./profile to read a profile in current dir.
1013 * Speedup of startup by 40%: Find the parent shell differently on
1014 GNU/Linux, cache information about the CPU and which setpgrp method
1015 to use to make GNU Parallel start 40% faster.
1017 * $PARALLEL_SSHLOGIN can be used in the command line.
1019 * Occasionally sane: Simple usage of GNU parallel
1020 https://vfoley.xyz/parallel/
1022 * How to run multiple bash scripts in parallel
1023 https://techieroop.com/how-to-run-multiple-bash-scripts-in-parallel/
1025 * Announcing Oracle Solaris 11.4 SRU10
1026 https://blogs.oracle.com/solaris/announcing-oracle-solaris-114-sru10
1028 * Руководство по использованию GNU Parallel https://zalinux.ru/?p=2623
1030 * Bug fixes and man page updates.
1035 * --shard can now take a column name and optionally a perl
1036 expression. Similar to --group-by and replacement strings.
1038 * Using AWK and R to parse 25tb
1039 https://livefreeordichotomize.com/2019/06/04/using_awk_and_r_to_parse_25tb/
1041 * Parallel and Visual testing with Behat
1042 http://parallelandvisualtestingwithbehat.blogspot.com/p/blog-page.html
1044 * 维基百科,自由的百科全书https://zh.wikipedia.org/wiki/GNU_parallel
1046 * Bug fixes and man page updates.
1051 * --group-by groups lines depending on value of a column. The value
1054 * How to compress (bzip / gzip) a very large text quickly?
1055 https://medium.com/@gchandra/how-to-compress-bzip-gzip-a-very-large-text-quickly-27c11f4c6681
1057 * Simple tutorial to install & use GNU Parallel
1058 https://medium.com/@gchandra/simple-tutorial-to-install-use-gnu-parallel-79251120d618
1060 * Introducing Parallel into Shell
1061 https://petelawson.com/post/parallel-in-shell/
1063 * Bug fixes and man page updates.
1068 * Invitation to the 10 years anniversary next year.
1070 * Bug fixes and man page updates.
1075 * SIGTERM is changed to SIGHUP, so sending SIGHUP will make GNU
1076 Parallel start no more jobs, but wait for running jobs to finish.
1078 * SIGTERM SIGTERM is changed to SIGTERM, so sending SIGTERM will make
1079 GNU Parallel kill all running jobs.
1081 * GNU Parallel now includes a cheat sheet: parallel_cheat.pdf
1083 * High Throughput Computing on RMACC Summit and Beyond
1084 https://calendar.colorado.edu/event/high_throughput_computing_on_rmacc_summit_and_beyond#.XH2NBhB7mV4
1086 * GNU Parallel Cheat Sheet by cpriest
1087 https://www.cheatography.com/cpriest/cheat-sheets/gnu-parallel/
1089 * Use Multiple CPU Cores(Parallelize) with Single Threaded Linux
1091 http://xensoft.com/use-multiple-cpu-cores-parallelize-with-single-threaded-linux-commands/
1093 * Bug fixes and man page updates.
1098 * --shard makes it possible to send input to a the same jobslot based
1099 on the value in one column of the input. It is similar to sharding
1102 * --shellquote --shellquote will shell quote the input twice.
1104 * GNU Parallel is available in Termux
1105 https://github.com/termux/termux-packages/tree/master/packages/parallel
1107 * Linux, command line & MetaCentrum
1108 https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf
1110 * How to supercharge your bash workflows with GNU parallel
1111 https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141
1113 * GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI
1115 * Parallelizing Freesurfer blog.cogneurostats.com/?p=148
1117 * FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw
1119 * FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/
1121 * Come ridimensionare 10k foto con la riga di comando
1122 https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
1124 * 并行处理 – Gnu Parallel:嵌套并行
1125 https://codeday.me/bug/20190122/552902.html
1127 * シェルスクリプトでコマンドを並列実行する方法
1128 https://www.kwbtblog.com/entry/2019/01/12/020423
1130 * Bug fixes and man page updates.
1135 * 'env_parallel --end-session' makes it possible to nest 'env_parallel
1138 * Using GNU Parallel in pentesting https://youtu.be/mZ0OUJmkIlA?t=873
1140 * Supercomputer Workshop: Feb 1&7
1141 http://www.ece.unm.edu/featured-students/supercomputer-workshop-feb-17.html
1143 * Bug fixes and man page updates.
1148 * Better /proc/cpuinfo parser.
1150 * Simpler job scheduling flow.
1152 * MPGI Workshop: Job Parallelization with Task Arrays and GNU Parallel
1153 https://www.msi.umn.edu/tutorials/mpgi-workshop-module-4
1155 * CONCOCT uses GNU Parallel
1156 https://media.readthedocs.org/pdf/concoct/latest/concoct.pdf
1158 * If you use SLURM read
1159 https://wiki.hpc.uconn.edu/index.php/Advanced_SLURM
1162 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
1164 * Bug fixes and man page updates.
1169 * Experimental simpler job flow control.
1171 * 時間がかかるコマンドを GNU parallel で 並列実行する
1172 https://qiita.com//grohiro/items/4db3fa951a4778c5c479
1174 * Bug fixes and man page updates.
1179 * env_parallel.fish: --session support (alpha quality)
1181 * GNU Parallel was cited in: High-throughput sequencing of murine
1182 immunoglobulin heavy chain repertoires using single side unique
1183 molecular identifiers on an Ion Torrent PGM
1184 https://doi.org/10.18632/oncotarget.25493
1186 * GNU parallel in Japanese Wikipedia
1187 https://ja.wikipedia.org/wiki/GNU_parallel
1189 * Outils de paramétrisation des tâches: lots de tâches, GNU Parallel
1190 https://www.eventbrite.ca/e/inscription-outils-de-parametrisation-des-taches-lots-de-taches-gnu-parallel-et-bqtools-midi-conference-de-50271076142
1192 * Bug fixes and man page updates.
1197 * Minix is supported again.
1199 * Updated graph showing GNU Parallel's overhead per job for each
1200 version. https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1202 * Intro to Computing at CARC includes introduction to GNU Parallel
1203 http://carc.unm.edu/education--training/workshops-and-seminars.html
1205 * Fast-GBS uses GNU Parallel https://bitbucket.org/jerlar73/fast-gbs/wiki/Home
1207 * Belgium at 10 m resolution in July 2018 http://www.cesbio.ups-tlse.fr/multitemp/?p=14116
1209 * Bug fixes and man page updates.
1214 * parset sets exit code.
1216 * How to install GNU Parallel
1217 https://www.techrepublic.com/videos/how-to-install-gnu-parallel/
1219 * Bug fixes and man page updates.
1224 * The quoting engine has been changed. Instead of using \-quoting GNU
1225 Parallel now uses '-quoting in bash/ash/dash/ksh. This should
1226 improve compatibility with different locales. This is a big change
1227 causing this release to be alpha quality.
1229 * The CPU calculation has changed. By default GNU Parallel uses the
1230 number of CPU threads as the number of CPUs. This can be changed to
1231 the number of CPU cores or number of CPU sockets with
1232 --use-cores-instead-of-threads or --use-sockets-instead-of-threads.
1234 * The detected number of sockets, cores, and threads can be shown with
1235 --number-of-sockets, --number-of-cores, and --number-of-threads.
1237 * env_parallel now support mksh using env_parallel.mksh.
1239 * GNU Parallel is distributed as part of Snippy
1240 https://github.com/tseemann/snippy
1242 * GNU Parallel: Ejecutar comandos simultáneamente en Linux
1243 https://esgeeks.com/gnu-parallel-ejecutar-comandos-simultaneo-linux/
1245 * Parallel download genomic data with GNU-Parallel
1246 https://digibio.blogspot.com/search/label/GNU-Parallel
1248 * Bug fixes and man page updates.
1253 * Deal better with multibyte chars by forcing LC_ALL=C.
1255 * GNU Parallel was introduced in Pincount Podcast:
1256 https://pincountpodcast.com/episodes/29.html
1258 * GNU Parallel was shown on Danish national news for 1.7 seconds: dr.dk
1260 * How to run Linux commands simultaneously with GNU Parallel
1261 https://www.techrepublic.com/article/how-to-run-commands-simultaneously-with-gnu-parallel/#ftag=RSS56d97e7
1263 * Easy parallelization with GNU parallel
1264 http://mpharrigan.com/2016/08/02/parallel.html
1266 * GNU Parallel for mutlithreaded tasks
1267 http://slhogle.github.io/2016/gnu-parallel/
1269 * A GNU Parallel Clustering Demo
1270 https://www.crowdsupply.com/ground-electronics/circumference/updates/a-gnu-parallel-clustering-demo
1272 * 使用 GNU Parallel 提高 Linux 命令行执行效率
1273 https://linux.cn/article-9718-1.html
1275 * Ejecutando tareas desde consola simultáneamente con GNU Parallel
1276 https://poesiabinaria.net/2018/06/ejecutando-tareas-desde-consola-simultaneamente-gnu-parallel/
1278 * Cómo ejecutar varias tareas simultáneamente en el terminal con GNU
1280 https://www.ubuntizando.com/como-ejecutar-varias-tareas-simultaneamente-en-el-terminal-con-gnu-parallel/
1282 * GNU Parallel 활용 가이드 http://genoglobe.kr/kribb/gnu_parallel
1284 * Bug fixes and man page updates.
1289 * --tty allows for more programs accessing /dev/tty in parallel. Some
1290 programs require tty access without using it.
1292 * env_parallel --session will record names in current environment in
1293 $PARALLEL_IGNORED_NAMES and exit. It is only used with env_parallel,
1294 and can work like --record-env but in a single session.
1296 * 35 day course: Linux shell scripting and text processing for big
1297 data https://comquest.in/training
1299 * How To Use Your Entire CPU In Bash With Parallel
1300 https://bash-prompt.net/guides/parallell-bash/
1302 * An easy way to run parallel jobs on Stampede2
1303 https://blog.uta.edu/xus/2017/09/29/an-easy-way-to-run-parallel-jobs-on-stampede2/
1305 * Get more done at the Linux command line with GNU Parallel
1306 https://opensource.com/article/18/5/gnu-parallel
1308 * Save Time with Modern Search Techniques
1309 https://www.sans.org/summit-archives/file/summit-archive-1524582079.pdf
1311 * GNU Parallel: haz más cosas simultáneamente en el terminal
1312 https://blog.desdelinux.net/gnu-parallel-haz-mas-cosas-simultaneamente-en-el-terminal/
1314 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
1315 https://www.slideshare.net/koji_matsuda/gnu-parallel
1317 * Bug fixes and man page updates.
1322 * --csv makes GNU Parallel parse the input sources as CSV. When used
1323 with --pipe it only passes full CSV-records.
1325 * Time in --bar is printed as 1d02h03m04s.
1327 * Optimization of --tee: It spawns a process less per value.
1329 * The GNU Parallel 2018 book is now available:
1330 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
1332 * Modern pentest tricks for faster, wider, greater engagement (15)
1333 https://conference.hitb.org/hitbsecconf2018ams/materials/D1%20COMMSEC%20-%20Thomas%20Debize%20-%20Modern%20Pentest%20Tricks%20for%20Faster,%20Wider,%20Greater%20Engagements.pdf
1335 * Running many serial jobs efficiently
1336 https://userinfo.surfsara.nl/documentation/running-many-serial-jobs-efficiently
1338 * GNU Parallel: как сохранить результаты нескольких команд для
1339 переменной? http://fliplinux.com/gnu-parallel-6.html
1341 * Running Multiple Commands in Parallel on a GNU Linux
1342 https://www.youtube.com/watch?v=sHpTywpb4_4
1344 * Klaatu covers the documentation of GNU parallel in episode 12x15
1345 http://gnuworldorder.info/
1347 * Bug fixes and man page updates.
1352 * niceload -p can now take multiple pids separated by comma
1354 * --timeout gives a warning when killing processes
1356 * --embed now uses the same code for all supported shells
1358 * --delay can now take arguments like 1h12m07s
1360 * Parallel. Straight from your command line
1361 https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee
1363 * GNU Parallel was used in POAP-Parallelized Open Babel & Autodock
1364 suite Pipeline https://github.com/inpacdb/POAP
1366 * Pi Cluster Parallel Script First Fire
1367 https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/
1369 * How to Restore MySQL Logical Backup at Maximum Speed
1370 https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/
1372 * Bug fixes and man page updates.
1377 * --embed makes it possible to embed GNU parallel in a shell
1378 script. This is useful if you need to distribute your script to
1379 someone who does not want to install GNU parallel.
1381 * Parallelize Your Large Batches of Small Jobs
1382 https://amito.me/2018/02/Parallelize-Your-Large-Batches-of-Small-Jobs/
1384 * Klaatu expounds upon xargs and talks GNU parallel in episode 12x6
1385 http://gnuworldorder.info/
1387 * How to use parallel to speed up your work
1388 https://mike42.me/blog/how-to-use-parallel-to-speed-up-your-work
1390 * Transient compute clustering with GNU Parallel and sshfs
1391 https://dennismungai.wordpress.com/2018/02/06/transient-compute-clustering-with-gnu-parallel-and-sshfs/
1393 * Useful Examples of ffmpeg and GNU parallel on the command-line
1394 https://dennismungai.wordpress.com/2018/02/06/useful-examples-of-ffmpeg-and-gnu-parallel-on-the-command-line/
1396 * Data Science at the Command Line (Chapter 8.3)
1397 https://www.datascienceatthecommandline.com/
1399 * Bug fixes and man page updates.
1404 * bash / 병렬 https://code.i-harness.com/ko/docs/bash/2a1a
1406 * 15分钟神器gnu parallel 入门观止
1407 http://www.ezilin.com/2018/01/15gnu-parallel.html
1409 * How To Run Multiple Commands In Parallel on Linux
1410 https://www.slashroot.in/how-run-multiple-commands-parallel-linux
1412 * Bug fixes and man page updates.
1417 * env_parset for ash, dash, ksh, sh, zsh
1419 * Automatically create hostgroups if argument ends in @sshlogin
1421 * Tips for running jobs on your VM
1422 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1424 * Node-local scheduling
1425 https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
1427 * GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
1429 * GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
1431 * Using GNU Parallel
1432 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1434 * Bug fixes and man page updates.
1439 * Using GNU Parallel to speed up Google Cloud Infrastructure
1441 https://medium.com/@pczarkowski/using-gnu-parallel-to-speed-up-google-cloud-infrastructure-management-53e5c555ec05
1443 * What is gnu parallel
1444 http://wiki.chpc.ac.za/howto:bioinformatics:gnu-parallel
1446 * Parallel, Scripts, Clusters, & Easy Use
1447 https://chiefio.wordpress.com/2017/11/10/parallel-scripts-clusters-easy-use/
1449 * Bug fixes and man page updates.
1454 * Initial support for XDG Base Directory $XDG_* environment variables.
1456 * Validating half a million TIFF files. Part
1458 https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1460 * Turing data science class: Cluster computing
1461 https://www.turing.ac.uk/events/masterclass-cluster-computing/
1463 * Butlin:Unix for Bioinformatics - advanced tutorial
1464 https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
1466 * พยายามใช้ CPU ให้ครบทุก CORE
1467 https://veer66.wordpress.com/2017/09/02/use-multi-core/
1469 * Examples on using GNU Parallel
1470 https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
1472 * Bug fixes and man page updates.
1477 * Use '--limit myprog' to make a dynamic job limit. Just return 0 to
1478 spawn another job, 1 to not spawn another job, and 2 to kill the
1481 * PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
1484 * Download all of humble bundle books in parallel
1485 https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel
1487 * Bug fixes and man page updates.
1492 * --line-buffer no longer uses tempfiles. This is faster and makes it
1493 possible for a single process to output more data than there is free
1496 * Vote for GNU Parallel's community ads on
1497 http://meta.unix.stackexchange.com/a/4356/2972
1498 http://meta.askubuntu.com/a/16750/22307
1499 http://meta.serverfault.com/a/9040/45704
1501 * Edit images with GNU Parallel and ImageMagick
1502 https://fedoramagazine.org/edit-images-parallel-imagemagick/
1504 * Running Bash Commands in Parallel
1505 https://dzone.com/articles/running-bash-commands-in-parallel-1
1507 * Today I Learned: GNU parallel, plate tectonics
1508 https://medium.com/@nornagon/today-i-learned-gnu-parallel-plate-tectonics-9fcf24045e63
1510 * GNU Parallel Tutorial
1511 https://www.upf.edu/web/sct-sit/gnu-parallel-tutorial
1513 * Validating half a million TIFF files
1514 http://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1516 * Blender and GNU Parallel
1517 https://www.blendernation.com/2017/08/16/blender-gnu-parallel/
1519 * Quick Introduction to GNU Parallel
1520 https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1522 * A simple distributed animation render example using GNU Parallel
1523 https://gitlab.com/skororu/scripts
1525 * Do stuff on things, in parallel
1526 http://blogs.fluidinfo.com/terry/2017/08/05/do-stuff-on-things-in-parallel/
1528 * Bash And GNU Parallel NGS Bidniz
1529 http://ino.pm/outreach/presentations/2014/03/genomics-wranglers/index.html
1531 * Using for loop vs Gnu parallel for BLAST
1532 http://www.ettemalab.org/using-for-loop-vs-gnu-parallel-for-blast/
1534 * 并行rsync https://gxnotes.com/article/175866.html
1536 * Bug fixes and man page updates.
1541 * Vote for GNU Parallel's community ads on
1542 http://meta.unix.stackexchange.com/a/4356/2972
1543 http://meta.askubuntu.com/a/16750/22307
1544 http://meta.serverfault.com/a/9040/45704
1546 * GNU Parallel was cited in: Hayabusa: Simple and Fast Full-Text
1547 Search Engine for Massive System Log Data
1548 http://dl.acm.org/citation.cfm?id=3095788
1550 * コマンドの並列化を行える『GNU parallel』の個人的使い方まとめ
1551 https://orebibou.com/2017/07/%E3%82%B3%E3%83%9E%E3%83%B3%E3%83%89%E3%81%AE%E4%B8%A6%E5%88%97%E5%8C%96%E3%82%92%E8%A1%8C%E3%81%88%E3%82%8B%E3%80%8Egnu-parallel%E3%80%8F%E3%81%AE%E5%80%8B%E4%BA%BA%E7%9A%84%E4%BD%BF%E3%81%84/
1553 * How to play and play with thousands of digitized 78rpm records
1554 https://blog.archive.org/2017/07/10/how-to-play-and-play-with-78rpm-record-transfers/
1556 * 并行一个for循环 https://gxnotes.com/article/130363.html
1558 * RFC 8142: GeoJSON Text Sequences
1559 https://sgillies.net/2017/05/18/rfc-8142-geojson-text-sequences.html
1561 * Git auto fetch script I run every day
1562 https://lukas.zapletalovi.com/2017/07/git-auto-fetch-script-i-run-every-day.html
1564 * cores, cpus and threads
1565 http://crazyhottommy.blogspot.de/2017/07/cores-cpus-and-threads.html
1567 * Bug fixes and man page updates.
1572 * The command line can now contain \257 (Macron) or UTF characters
1575 * Vote for GNU Parallel's community ads on
1576 http://meta.unix.stackexchange.com/a/4356/2972
1577 http://meta.askubuntu.com/a/16750/22307
1578 http://meta.serverfault.com/a/9040/45704
1580 * Graph for overhead for 1000 jobs has been updated. It remains
1581 steadily at 3.5 ms per job on a 1.7 GHz machine
1582 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1584 * GNU Parallel was cited in: The topology of the directed clique
1585 complex as a network invariant
1586 https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
1588 * GNU Parallel was cited in: Improving Optical Character Recognition
1589 of Finnish Historical Newspapers with a Combination of Fraktur &
1590 Antiqua Models and Image
1591 http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
1593 * GNU Parallel was cited in: Parallel Execution of Structural Mechanic
1594 Tasks with Use of Small Supercomputers
1595 http://www.sciencedirect.com/science/article/pii/S1877705817324815
1597 * GNU Parallel was cited in: Integration of a Multilingual Preordering
1598 Component into a Commercial SMT Platform
1599 https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
1601 * Tips For Running Jobs On Your VM
1602 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1604 * Speed up ML model development with GNU Parallel
1605 https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
1607 * Parallelizing a Python Function for the Extremely Lazy
1608 http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
1611 http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
1613 * Bug fixes and man page updates.
1618 * --timeout can now use s=second,m=minute,h=hour,d=day.
1620 * --dr is now an alias for --dry-run.
1622 * Vote for GNU Parallel's community ads on
1623 http://meta.unix.stackexchange.com/a/4356/2972
1624 http://meta.askubuntu.com/a/16750/22307
1625 http://meta.serverfault.com/a/9040/45704
1627 * GNU Parallel was cited in: Feature Detection in Visual Cortex during
1628 Different Functional States
1629 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
1631 * GNU Parallel was cited in: From genotype to phenotype: inferring
1632 relationships between microbial traits and genomic components
1633 https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
1635 * GNU Parallel was cited in: Designing fecal microbiota transplant
1636 trials that account for differences in donor stool efficacy
1637 http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
1639 * GNU Parallel was cited in: Assessing the predictability of
1640 anharmonic vibrational modes at the example of hydroxyl groups - ad
1641 hoc construction of localised modes and the influence of structural
1642 solute–solvent motifs
1643 http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
1645 * GNU Parallel was cited in: Mapping Environmental Influences on
1647 ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
1649 * GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
1650 Glass Transition in One Dimension
1651 https://arxiv.org/pdf/1704.02257.pdf
1653 * GNU Parallel was cited in: Online Automatic Post-editing for MT in a
1654 Multi-Domain Translation Environment
1655 https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
1657 * GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
1658 moderate-resolution reflective solar bands against MODIS Aqua over
1660 http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
1662 * GNU Parallel was cited in: Scattering Networks: Efficient 2D
1663 Implementation And Application To Melanoma Classification
1664 http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
1666 * GNU Parallel was cited in: Genome-scale detection of positive
1667 selection in 9 primates predicts human-virus evolutionary conflicts
1668 http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
1670 * GNU Parallel is used in: Creates a speech dataset for deep learning
1671 https://github.com/jupiter126/Create_Speech_Dataset
1673 * GNU Parallel is used in: Parse and process the demixing secrets
1674 dataset (DSD100) https://github.com/faroit/dsdtools
1676 * First glance at the gnu parallel utility
1677 https://ibiscybernetics.com/blog/2017-04-05.html
1679 * Installing parallel from source
1680 https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
1682 * How to run command or code in parallel in bash shell under Linux or
1684 https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
1686 * Parallel Serial Jobs Using GNU Parallel
1687 http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
1689 * GNU Parallel or How to list millions of S3 objects
1690 https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
1692 * Which Is the Best Tool for Copying a Large Directory Tree Locally?
1693 http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
1695 * Bug fixes and man page updates.
1700 * --halt supports done in addition to success and fail.
1702 * parset will set variables in parallel in Bash.
1704 * Perl 5.6 on Irix is no longer supported.
1706 * Vote for GNU Parallel's community ads on
1707 http://meta.unix.stackexchange.com/a/4356/2972
1708 http://meta.askubuntu.com/a/16750/22307
1709 http://meta.serverfault.com/a/9040/45704
1711 * GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
1712 from transcriptomic data using MapReduce
1713 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
1715 * GNU Parallel was cited in: StrAuto: automation and parallelization
1716 of STRUCTURE analysis
1717 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
1719 * GNU Parallel was cited in: Trespassing the Boundaries: Labeling
1720 Temporal Bounds for Object Interactions in Egocentric Video
1721 https://128.84.21.199/pdf/1703.09026.pdf
1723 * GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
1725 * Using GNU Parallel
1726 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1728 * Find and xargs and parallel
1729 http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
1731 * Quick Introduction to GNU Parallel
1732 https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1734 * Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
1736 * Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
1738 * Bug fixes and man page updates.
1743 * --rpl can now take arguments by adding '(regexp)' in the replacement
1746 * Vote for GNU Parallel's community ads on
1747 http://meta.unix.stackexchange.com/a/4356/2972
1748 http://meta.askubuntu.com/a/16750/22307
1749 http://meta.serverfault.com/a/9040/45704
1751 * GNU Parallel was cited in: shmlast: An improved implementation of
1752 Conditional Reciprocal Best Hits with LAST and Python
1753 https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
1755 * GNU Parallel was cited in: Prediction of relativistic electron flux
1756 in the Earth’s outer radiation belt at geostationary orbit by
1758 https://link.springer.com/article/10.1134/S0016793217010108
1760 * GNU Parallel was cited in: Higher likelihood of multiple bit-flips
1761 due to neutron-induced strikes on logic gates
1762 https://arxiv.org/pdf/1612.08239.pdf
1764 * GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
1765 Calculation of Hybrid Classical and Quantum Free Energies
1766 http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
1768 * GNU Parallel was cited in: Learning string distance with smoothing
1769 for OCR spelling correction
1770 https://link.springer.com/article/10.1007/s11042-016-4185-5
1772 * GNU Parallel was cited in: The Breakdown of String Perturbation
1773 Theory for Many External Particles
1774 https://arxiv.org/pdf/1611.08003.pdf
1776 * GNU Parallel was cited in: Operations Research Applications in
1778 https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
1780 * GNU Parallel was cited in: Parallel Computing: GNU Parallel
1781 http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
1783 * Stig Sandbeck Mathisen: Change All The Passwords (Again)
1784 http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
1786 * Trabalhando como Paralelismo no Bash usando o GNU Parallel
1787 http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
1789 * GNU parallel と SQL*Loader 組み合わせ実行例
1790 https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
1792 * Bug fixes and man page updates.
1797 * env_parallel now supports /bin/sh, ash, dash.
1799 * --tee will pipe all data to all jobs. Used with --pipe/--pipepart
1800 and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
1801 {} | wc -l' ::: {0..9}
1803 * If --results {replstr} ends in /: save in dir. Otherwise save as
1804 file. Example: parallel --results {} echo {} ::: a b c
1806 * Vote for GNU Parallel's community ads on
1807 http://meta.unix.stackexchange.com/a/4356/2972
1808 http://meta.askubuntu.com/a/16750/22307
1809 http://meta.serverfault.com/a/9040/45704
1811 * GNU Parallel was cited in: Low-delay forwarding with multiple
1812 candidates for VANETs using multi-criteria decision making
1813 http://ieeexplore.ieee.org/document/7835961/
1815 * GNU Parallel was cited in: An Integrated Simulator and Dataset that
1816 Combines Grasping and Vision for Deep Learning
1817 https://arxiv.org/pdf/1702.02103.pdf
1819 * GNU Parallel was cited in: A Bayesian model selection approach for
1820 identifying differentially expressed transcripts from RNA sequencing
1821 data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
1823 * GNU Parallel was cited in: The impact of copy number variation on
1824 gout, and the apple genome
1825 https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
1827 * GNU Parallel was cited in: Reaction rates for reaction-diffusion
1828 kinetics on unstructured meshes
1829 http://aip.scitation.org/doi/10.1063/1.4975167
1831 * GNU Parallel was cited in: Modeling prediction error improves power
1832 of transcriptome-wide association studies
1833 http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
1835 * GNU Parallel was cited in: Proper experimental design requires
1836 randomization/balancing of molecular ecology experiments
1837 http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
1839 * GNU Parallel was cited in: Experiment-based thermal micromagnetic
1840 simulations of the magnetization reversal for ns-range clocked
1842 http://aip.scitation.org/doi/full/10.1063/1.4974021
1844 * GNU Parallel was cited in: The University of Edinburgh’s systems
1845 submission to the MT task at IWSLT
1846 http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
1848 * Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
1850 * Job: DevOps Engineer/Senior Systems Administrator in New York, New
1852 http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
1854 * Training in GNU Parallel:
1855 https://www.carc.unm.edu/education-outreach/workshops--training/
1857 * Training in GNU Parallel:
1858 http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
1860 * Batch Convert Images from PNG to JPEG
1861 http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
1863 * Accelerating Oxford Nanopore Basecalling
1864 http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
1866 * parallel и imagemagick в loop на bash
1867 https://www.linux.org.ru/forum/development/13190247
1869 * Bug fixes and man page updates.
1879 * sql now uses a temporary credentials file for MySQL to avoid
1882 * --sqlmaster and --sqlworker have been reworked.
1884 * --sqlworker only reads from the DBURL: any command and any arguments
1887 * --sqlmaster +DBURL will append different commands to the DBURL and
1888 not erase the table.
1890 * If --results contain a replacement string, no tree structure with
1891 args will be generated.
1893 * --fg --tmux or --fg --tmuxpane will connect to the tmux.
1895 * GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
1896 Classification, and Measurement
1897 https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
1899 * GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
1900 Social and Solitary Wild Bees Detects Associations with Eukaryote
1901 Parasites and New Viruses
1902 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
1904 * GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
1905 of Metric Temporal Logic
1906 http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
1908 * 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
1910 * GNU Parallel as a queuing system:
1911 http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
1913 * AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
1915 http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
1916 and https://youtu.be/PlTuJx4VnGw?t=30m16s
1918 * Bug fixes and man page updates.
1923 * --results foo.csv will save output as a CSV-file. Can be directly
1924 imported into R or LibreCalc.
1926 * When using --pipepart a negative --block-size is not interpreted as
1927 a block size but as the number of blocks each jobslot should have.
1929 * --sqlmaster/--sqlandworker will append jobs to the DBURL if the
1930 DBURL is prepended with +.
1932 * GNU Parallel was cited in: A cloud-based workflow to quantify
1933 transcript-expression levels in public cancer compendia
1934 http://www.nature.com/articles/srep39259
1936 * GNU Parallel was cited in: Determination of crystal structures of
1937 proteins of unknown identity using a marathon molecular replacement
1938 procedure: Structure of Stenotrophomonas maltophilia
1939 phosphate-binding protein
1940 https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
1942 * GNU Parallel was cited in: Large-scale benchmarking reveals false
1943 discoveries and count transformation sensitivity in 16S rRNA gene
1944 amplicon data analysis methods used in microbiome studies
1945 http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
1947 * GNU Parallel was cited in: Decomposing Images into Layers via
1949 https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
1951 * Transient compute clustering with GNU Parallel and sshfs
1952 https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
1954 * 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
1955 http://www.tecmint.com/linux-image-conversion-tools/
1957 * All's Fair in Love and Distributed Storage
1958 http://cohesity.com/blog/alls-fair-love-distributed-storage/
1960 * How can I use GNU Parallel to run a lot of commands in parallel
1961 https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
1963 * 정해영의 블로그 - JEONG Haeyoung's blog
1964 http://blog.genoglobe.com/2016/11/gnu-parallel.html
1966 * 在Linux下将PNG和JPG批量互转的四种方法
1967 http://os.51cto.com/art/201612/524182.htm
1969 * Running in parallel http://tomkimpson.com/howto/gnuparallel/
1971 * Taco Bell Parallel Programming
1972 https://giorgos.sealabs.net/taco-bell-parallel-programming.html
1974 * Bug fixes and man page updates.
1979 * --record-env can now be used with env_parallel for bash, ksh, pdksh,
1982 * GNU Parallel was cited in: An improved implementation of Conditional
1983 Reciprocal Best Hits with LAST and Python
1984 https://pypi.python.org/pypi/shmlast/1.0.3
1986 * GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
1988 http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
1990 * GNU/Parallel – Run multiple commands simultaneously
1991 https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
1993 * Tutorial: Parallel web scraping with CasperJS and GNU Parallel
1994 http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
1996 * Bug fixes and man page updates.
2001 * First command no longer gets stdin as it causes unpredictable issues.
2003 * GNU Parallel was cited in: Efficiently parallelized modeling of
2004 tightly focused, large bandwidth laser pulses
2005 https://arxiv.org/pdf/1609.08146v1.pdf
2007 * How to crunch lots of geodata in parallel
2008 http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
2010 * GNU parallel is my new toaster
2011 http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
2013 * Bug fixes and man page updates.
2018 * parcat - cat files or fifos in parallel
2020 * GNU Parallel was cited in: Velocity: A Netflow Based Optimized
2022 https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
2024 * GNU Parallel was cited in: Viral deep sequencing needs an adaptive
2025 approach: IRMA, the iterative refinement meta-assembler
2026 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
2028 * Using GNU Parallel and ImageMagick for Conversions
2029 https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2031 * Training in GNU Parallel
2032 http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
2034 * Chown Ceph OSD data directory using GNU Parallel
2035 http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
2037 * FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
2039 * dDocent: A guide to ddRAD sequencing
2040 https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
2042 * SOFTWARE GNU Parallel
2043 http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
2045 * Bug fixes and man page updates.
2050 * --tmuxpane opens jobs in panes in tmux. Useful if you want to
2051 monitor progress of less than 100 simultaneous jobs.
2053 * --linebuffer now treats \r as line ending, too.
2055 * Perl changes forces use of floats to be given with leading zero, so
2058 * --xapply renamed to --link.
2060 * Support for pdksh will fade until someone packages it for Ubuntu 16.
2062 * GNU Parallel was cited in: Exome sequencing of geographically
2063 diverse barley landraces and wild relatives gives insights into
2064 environmental adaptation
2065 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
2067 * GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
2068 Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
2070 * Easy parallelization with GNU parallel
2071 http://mpharrigan.com/2016/08/02/parallel.html
2073 * Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
2075 http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
2078 http://www.manitou-mail.org/blog/2016/07/parallel-import/
2080 * Large file batch processing using NodeJs and GNU Parallel
2081 http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
2083 * Bug fixes and man page updates.
2088 * env_parallel is now ready for wider testing. It is still beta
2091 * env_parallel is heavily modified for all shells and testing has been
2094 * Selectively choosing what to export using --env now works for
2095 env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
2097 * --round-robin now gives more work to a job that processes faster
2098 instead of same amount to all jobs.
2100 * --pipepart works on block devices on GNU/Linux.
2102 * GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
2103 Introns for Phylogenetics from High-Throughput Sequencing Reads
2104 Using Target Enrichment
2105 http://www.bioone.org/doi/full/10.3732/apps.1600016
2107 * GNU Parallel was cited in: StrAuto - Automation and Parallelization
2108 of STRUCTURE Analysis
2109 http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
2111 * GNU Parallel was cited in: Tools and techniques for computational
2113 http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
2115 * GNU Parallel was cited in: FlashPCA: fast sparse canonical
2116 correlation analysis of genomic data
2117 http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
2119 * GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
2120 Fine-tuning Query Expansion and Unification Strategies
2121 http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
2123 * GNU Parallel was cited in: The Evolution and Fate of
2124 Super-Chandrasekhar Mass White Dwarf Merger Remnants
2125 http://arxiv.org/pdf/1606.02300.pdf
2127 * GNU Parallel was cited in: Evaluation of Coastal Scatterometer
2129 https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
2131 * GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
2133 * The iconv slurp misfeature
2134 http://www.openfusion.net/linux/iconv_slurp_misfeature
2136 * แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
2138 * Bug fixes and man page updates.
2143 * $PATH can now be exported using --env PATH. Useful if GNU Parallel
2144 is not in your path on remote machines.
2146 * If --block is left out, --pipepart will use a block size that will
2147 result in 10 jobs per jobslot.
2149 * The cookie from 2016-01-04 was won by Morgan Rodgers on the
2150 2016-06-06 after 5 months.
2152 * Vote for GNU Parallel's community ad on
2153 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2155 * GNU Parallel was cited in: Genotypic Resistance Tests Sequences
2156 Reveal the Role of Marginalized Populations in HIV-1 Transmission in
2157 Switzerland http://www.nature.com/articles/srep27580
2159 * GNU Parallel was cited in: A Deep-Learning Approach for Operation of
2160 an Automated Realtime Flare Forecast
2161 https://arxiv.org/pdf/1606.01587.pdf
2163 * Unix parallel: Populating all the USB sticks
2164 http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
2166 * GNU Parallel is a fantastic utility https://www.dray.be/parallel/
2168 * Combining a large number of VCF files
2169 https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
2171 * Useful Scraping Techniques
2172 http://blog.apps.npr.org/2016/06/17/scraping-tips.html
2174 * Tools of the trade
2175 http://onox.com.br/2015/05/tools-of-the-trade/#more-198
2177 * Armslist scraper https://github.com/nprapps/armslist-scraper/
2179 * Bug fixes and man page updates.
2184 * niceload --net pauses the program if the internet connection is
2187 * Vote for GNU Parallel's community ad on
2188 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2190 * Updated speed comparison between versions
2191 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
2193 * GNU Parallel was cited in: Improving computation efficiency by
2194 parallel programming
2195 http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
2197 * GNU Parallel was cited in: A supernova feedback implementation for
2198 the astrophysical simulation software Arepo
2199 https://arxiv.org/abs/1604.06071
2201 * GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
2202 resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
2204 * GNU Parallel was cited in: Host-pathogen co-evolution and the
2205 emergence of broadly neutralizing antibodies in chronic infections
2206 https://arxiv.org/abs/1512.06296
2208 * GNU Parallel was cited in: Pacific People, Metabolic Disease and
2209 Evolutionary Processes: a mitochondrial DNA study
2210 https://otago.ourarchive.ac.nz/handle/10523/6340
2212 * GNU Parallel was cited in: The effect of domain modeling on
2213 efficiency of planning: Lessons from the Nomystery domain
2214 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
2216 * GNU Parallel was cited in: Oops, my tests broke the build: An
2217 analysis of Travis CI builds with GitHub
2218 https://peerj.com/preprints/1984/
2220 * GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
2221 Distinct Set of Genomic Properties Over 40 Million Years of
2222 Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
2224 * GNU Parallel was cited in: An Empirical Comparison of Neural
2225 Architectures for Reinforcement Learning in Partially Observable
2227 http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
2229 * GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
2230 Management in Requester-wins Hardware Transactional Memory
2231 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
2233 * GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
2234 Mutation-Induced Stability Changes with Feature-Based Multiple
2236 http://www.sciencedirect.com/science/article/pii/S0022283616000310
2238 * GNU Parallel was cited in: A new orthology assessment method for
2239 phylogenomic data: Unrooted Phylogenetic Orthology
2240 http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
2241 https://github.com/ballesterus/UPhO
2243 * GNU Parallel was cited in: Distinctive Interest Point Selection for
2244 Efficient Near-duplicate Image Retrieval
2245 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
2247 * GNU Parallel was cited in: The Evolution of C Programming Practices:
2248 A Study of the Unix Operating System 1973–2015
2249 https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
2250 thumbnail graphs I have ever seen scattered all over the text)
2252 * GNU Parallel was cited in: Data processing pipeline for serial
2253 femtosecond crystallography at SACLA
2254 http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
2256 * GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
2257 Dynamics http://arxiv.org/pdf/1512.01460.pdf
2259 * GNU Parallel was cited in: Genomic legacy of the African cheetah,
2261 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
2263 * GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
2264 Characterization of IPv6 Network Security Policy
2265 http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
2267 * GNU Parallel was cited in: Comprehensive Annotation of the
2268 Parastagonospora nodorum Reference Genome Using Next-Generation
2269 Genomics, Transcriptomics and Proteogenomics
2270 http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
2272 * GNU Parallel was cited in: How attention influences perceptual
2273 decision making: Single-trial EEG correlates of drift-diffusion
2274 model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
2276 * GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
2277 Using High-Throughput Sequencing Reads
2278 http://repository.upenn.edu/edissertations/1460/
2280 * GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
2281 Processing with Associative Transducers
2282 http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
2284 * GNU Parallel was cited in: PVAIR: Partial Variable Assignment
2285 InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
2287 * GNU Parallel was cited in: Comparative Cladistics: Fossils,
2288 Morphological Data Partitions and Lost Branches in the Fossil Tree
2289 of Life http://opus.bath.ac.uk/43955/
2291 * GNU Parallel was cited in: Shannon: An Information-Optimal de
2292 NovoRNA-Seq Assembler
2293 http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
2295 * GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
2296 Estimation for Coastal Ocean Modeling
2297 https://repositories.lib.utexas.edu/handle/2152/32435
2299 * GNU Parallel was cited in: Computational Design of DNA-Binding
2301 http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
2303 * GNU Parallel was cited in: Reference genotype and exome data from an
2304 Australian Aboriginal population for health-based research
2305 http://www.nature.com/articles/sdata201623
2307 * GNU Parallel was cited in: Do aye-ayes echolocate?
2308 http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
2310 * GNU Parallel was cited in: Functional enrichments of disease
2311 variants across thousands of independent loci in eight diseases
2312 http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
2314 * GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
2315 microbial trait analyzer
2316 http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
2318 * GNU Parallel was mentioned in: Fast Playback Framework for Analysis
2319 of Ground-Based Doppler Radar Observations Using MapReduce
2321 http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
2323 * NCBI blast tutorial
2324 https://github.com/enormandeau/ncbi_blast_tutorial
2326 * Distributed Preservation Made Simple
2327 https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
2329 * Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
2331 * Bug fixes and man page updates.
2336 * :::+ and ::::+ work like ::: and :::: but links this input source to
2337 the previous input source in a --xapply fashion. Contrary to
2338 --xapply values do not wrap: The shortest input source determines
2341 * --line-buffer --keep-order now outputs continously from the oldest
2342 job still running. This is more what you would expect than the
2343 earlier behaviour where --keep-order had no effect with
2346 * env_parallel supports tcsh, csh, pdksh. In fish it now supports
2347 arrays. In csh/tcsh it now supports variables, aliases, and arrays
2348 with no special chars. In pdksh it supports aliases, functions,
2349 variables, and arrays.
2351 * Function exporting on Mac OS X works around old Bash version.
2353 * Better CPU detection on OpenIndiana.
2355 * GNU Parallel was cited in: Automatic Methods for Assisted
2357 https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
2359 * GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
2360 for Natural SUSY with a R-Sneutrino LSP
2361 http://arxiv.org/pdf/1603.06130.pdf
2363 * GNU Parallel was cited in: An Operational Radiometric Landsat
2364 Preprocessing Framework for Large-Area Time Series Applications
2365 https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
2367 * A basic demo of how GNU Parallel can speed up execution of commands
2368 https://www.youtube.com/watch?v=kl8LO2jcvMc
2370 * qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
2372 * FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
2374 * Parallel Processing with Catmandu
2375 https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
2378 http://staypython.blogspot.dk/2016/04/gnu-parallel.html
2380 * Bug fixes and man page updates.
2385 * env_parallel is a function that exports the environment (functions,
2386 aliases, variables, and arrays) to GNU Parallel. Run 'man
2387 env_parallel' for details.
2389 * niceload --prg now searches for substrings if no process with the
2392 * GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
2393 Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
2395 * GNU Parallel was mentioned (with wrong citation) in: Dual Level
2396 Parallel Computations for LargeScale High-Fidelity Database to
2397 Design Aerospace Vehicles
2398 http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
2400 * Using ‘Parallel’ in Unix
2401 https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
2403 * JPEG Squish uses (and co-distributes) GNU Parallel:
2404 http://dantidswell.co.uk/jpeg-squish/
2406 * Bug fixes and man page updates.
2411 * Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
2412 http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
2413 http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2414 http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
2416 * Daily Quick Tip: parallel
2417 https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
2419 * Downloading a list of URLs
2420 http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
2422 * Using GNU Parallel and ImageMagick for Conversions
2423 http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2425 * Running bash commands in parallel
2426 http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
2428 * parallel processing in PDAL
2429 https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
2431 * A Million Text Files And A Single Laptop
2432 http://randyzwitch.com/gnu-parallel-medium-data/
2434 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
2435 http://www.slideshare.net/koji_matsuda/gnu-parallel
2437 * Bug fixes and man page updates.
2442 * --sql DBURL uses DBURL as storage for jobs and output. It does not
2443 run any jobs so it requires at least one --sqlworker. DBURL must
2446 * --sqlworker DBURL gets jobs from DBURL and stores the result back to
2449 * --sqlandworker is a shorthand for --sql and --sqlworker.
2451 * --sqlworker requires the output of a single job to fit in memory.
2453 * --results now also saves a file called 'seq' containing the sequence
2456 * If $PARALLEL_ENV is a file, then that file will be read into
2459 * man parallel_tutorial has been given an overhaul.
2461 * --workdir now accepts replacementstrings.
2463 * GNU Parallel was cited in: Possum - A Framework for
2464 Three-Dimensional Reconstruction of Brain Images from Serial
2465 Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
2467 * GNU Parallel was cited in: A Genetic Algorithm for the selection of
2468 structural MRI features for classification of Mild Cognitive
2469 Impairment and Alzheimer's Disease
2470 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
2472 * GNU Parallel was cited in: The Effect of Domain Modeling on
2473 Performance of Planning Algorithms
2474 http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
2476 * Plotting time tables for jobs run by GNU Parallel
2477 https://github.com/ziotom78/plot_joblog
2479 * GNU Parallel was used in: Mission Impossible: you have 1 minute to
2480 analyze the Ebola Genome https://www.biostars.org/p/119397
2482 * GNU Parallel is used in LAST: http://last.cbrc.jp/
2484 * Distributed Log Search Using GNU Parallel
2485 http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
2487 * Bug fixes and man page updates.
2492 * --transfer is now an alias for --transferfile {}.
2494 * --transferfile works like --transfer, but takes an argument like
2495 --return. This makes it possible to combine transferring files
2496 with multiple input sources: parallel -S server --tf {1} wc {2}
2497 {1} ::: * ::: -l -w -c
2499 * total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
2500 $_=total_jobs() =}' ::: {1..50}
2502 * GNU Parallel was cited in: Evolution and Learning in Heterogeneous
2504 http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
2506 * GNU Parallel was cited in: Achieving Consistent Doppler Measurements
2507 from SDO/HMI Vector Field Inversions
2508 http://arxiv.org/pdf/1511.06500.pdf
2510 * Flo uses GNU Parallel: https://github.com/wurmlab/flo
2512 * 使用 GNU parallel 來平行運算
2513 http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
2515 * Bug fixes and man page updates.
2520 * GNU Parallel packaged for CERN CentOS:
2521 http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
2523 * GNU Parallel was cited in: The Outer Solar System Origins Survey:
2524 I. Design and First-Quarter Discoveries
2525 http://arxiv.org/pdf/1511.02895.pdf
2527 * GNU Parallel was cited in: Contrasting genetic architectures of
2528 schizophrenia and other complex diseases using fast
2529 variance-components analysis
2530 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
2532 * GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
2533 using Support Vector Machines
2534 http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
2536 * GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
2537 Using Brownian Dynamics, Molecular Dynamics and Milestoning
2538 http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
2540 * GNU Parallel was cited in: A Detailed Characterization of Errors in
2541 Logic Circuits due to Single-Event Transients
2542 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
2544 * GNU Parallel was cited in: Arabic Speaker Emotion Classification
2545 Using Rhythm Metrics and Neural Networks
2546 http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
2548 * GNU Parallel was cited in: Stride Search: a general algorithm for
2549 storm detection in high resolution climate data
2550 http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
2552 * GNU Parallel was cited in: Decomposing Digital Paintings into Layers
2553 via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
2555 * GNU Parallel was cited in: Structure and evolutionary history of a
2556 large family of NLR proteins in the zebrafish
2557 http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
2559 * GNU Parallel was cited in: Evolution of movement strategies under
2560 competitive interactions
2561 http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
2563 * Automating large numbers of tasks
2564 https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
2566 * Max out your IOPs with GNU Parallel
2567 http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
2569 * Bug fixes and man page updates.
2574 * --plus makes it possible to use {##} as a shorthand for
2575 {= $_=$Global::JobQueue->total_jobs() =} which gives the the number
2576 of jobs to run in total.
2578 * {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
2581 * GNU Parallel is now mostly compatible with lsh
2582 (http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
2583 autossh (http://www.harding.motd.ca/autossh/).
2585 * --workdir ... now also works when run locally.
2587 * GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
2588 regular graph http://arxiv.org/pdf/1509.05933.pdf
2590 * GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
2592 http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html
2594 * GNU Parallel is used in TraitAR:
2595 https://testpypi.python.org/pypi/traitar/0.1.4
2597 * A parallel and fast way to download multiple files
2598 http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html
2600 * Usar GNU Parallel para aumentar el rendimiento de tus scripts
2601 http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/
2603 * Bug fixes and man page updates.
2608 * GNU Parallel was cited in: Flexible Modeling of Epidemics with an
2609 Empirical Bayes Framework
2610 http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382
2612 * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
2613 https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf
2615 * GNU Parallel was cited in: A Scalable Parallel Implementation of
2616 Evolutionary Algorithms for Multi-Objective Optimization on GPUs
2617 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074
2619 * GNU Parallel was cited in: How Can We Measure the Similarity Between
2620 Résumés of Selected Candidates for a Job?
2621 https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job
2623 * GNU Parallel was cited in: Interplay of cell dynamics and epithelial
2624 tension during morphogenesis of the Drosophila pupal wing
2625 http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf
2627 * Third-party selling GNU Parallel T-shirts
2628 http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html
2630 * Joys of gnu parallel
2631 http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/
2633 * Crop and resize images with bash and ImageMagick
2634 https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/
2636 * Three Ways to Script Processes in Parallel
2637 http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/
2639 * What It Looks Like to Process 3.5 Million Books
2640 http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/
2642 * Bug fixes and man page updates.
2647 * If $job->skip() is called in {= =} the job will not be run.
2649 * @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
2650 $_="j" =}' ::: 1 2 3 ::: 4 5 6
2652 * Version of GNU Parallel that uses PostgreSQL as backend
2653 https://github.com/stephen-fralich/parallel-sql/
2655 * SpeedSeq: ultra-fast personal genome analysis and interpretation
2656 http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html
2658 * GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep
2660 * Who actually reads the code?
2661 http://www.fsf.org/blogs/community/who-actually-reads-the-code
2663 * Introduction to GNU Parallel
2664 http://erictleung.com/2015/08/06/intro-to-gnu-parallel/
2666 * ¿Alguien se lee el código?
2667 http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html
2669 * ¿Quién se lee el código fuente?
2670 https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/
2672 * Distribution des traitements avec GNU Parallel
2673 http://blog.inovia-conseil.fr/?p=226#4
2675 * Эксперимент по проверке, читают ли код открытых проектов
2676 http://www.opennet.ru/opennews/art.shtml?num=42718
2678 * 多核心主機搭配 GNU parallel
2679 http://blog.zeroplex.tw/2015/08/gnu-parallel.html
2681 * Bug fixes and man page updates.
2686 * If a record fits in a block, --block only reads upto the size of
2687 --block. If not: --block reads a full --block more.
2689 * Due to widely spread distributions still using --tollef even after a
2690 year of being retired following a year of being obsolete, --tollef
2691 now gives an error unless used with --gnu.
2693 * --nice now uses a perl wrapper instead of the nice command.
2695 * Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
2698 * A parser for GNU Parallel --joblog files:
2699 https://github.com/harryjubb/joblog
2701 * GNU Parallel was cited in: Dynamical formation & scattering of
2702 hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
2703 collisions http://arxiv.org/pdf/1507.03593.pdf
2705 * GNU Parallel was cited in: A Fast Compiler for NetKAT
2706 http://arxiv.org/pdf/1506.06378.pdf
2708 * GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
2710 http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
2712 * GNU Parallel was used in: Somatic mutation calling from the matched
2713 tumor-normal exome-sequencing
2714 http://fafner.meb.ki.se/biostatwiki/somac/
2716 * Parallel Processing from the Command Line
2717 https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
2719 * Using GNU Parallel to speed up network operations
2720 http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
2722 * Crawl faster with "parallel" - but how fast?
2723 http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
2725 * Simultaneously benchmark many URLs with ApacheBench and GNU parallel
2726 https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
2728 * Bug fixes and man page updates.
2733 * --halt has been rewritten completely. You can now combine
2734 percentages with success or fail. See the man page.
2736 * Exit values 102..254 have been removed. 101 means more than 100 jobs
2739 * Killing through --timeout, --memfree, or --halt is now done as a
2742 * --termseq determines which signals are sent when a job is killed.
2744 * An empty argument would previously cause no string to be
2745 inserted. This is now changed to '' being inserted, thus prepending
2746 a space to the output of: parallel echo {} b ::: ''
2748 * $PARALLEL_ENV can now be set to an environment prepending the
2749 command. Used in env_parallel as mentioned in the manpage.
2751 * --retry-failed will retry all failed jobs in a joblog. It will
2752 ignore any command given.
2754 * --ssh and $PARALLEL_SSH can be used to set the command used for
2755 ssh. The command is assumed to behave the same way as ssh.
2757 * --fifo now works in csh, too.
2759 * Q(...) can be used in {= =} to shell quote a string.
2761 * GNU Parallel was cited in: DockBench: An Integrated Informatic
2762 Platform Bridging the Gap between the Robust Validation of Docking
2763 Protocols and Virtual Screening Simulations
2764 http://www.mdpi.com/1420-3049/20/6/9977
2766 * GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
2768 http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
2770 * GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
2771 scattering and resonance calculations
2772 http://arxiv.org/pdf/1505.07691.pdf
2774 * GNU Parallel was cited in: A quantitative assessment of the Hadoop
2775 framework for analyzing massively parallel DNA sequencing data
2776 http://link.springer.com/article/10.1186/s13742-015-0058-5
2778 * GNU Parallel was cited in: A composite genome approach to identify
2779 phylogenetically informative data from next-generation sequencing
2780 http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
2782 * GNU Parallel is used in: taxator-tk
2783 http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
2785 * GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
2787 * GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
2789 * GNU Parallel is used in: A Fingerprint Identification System
2790 https://curve.carleton.ca/system/files/theses/28733.pdf
2792 * Job ad asking for GNU Parallel experience:
2793 http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
2795 * Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
2797 * Bug fixes and man page updates.
2802 * Security: The security issue for --sshlogin + --fifo/--cat has been
2803 fixed. Thereby all issues with
2804 http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
2807 * Security: After further security analysis the issue fixed in
2808 20150422 also fixed the problem for --tmux.
2810 * GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
2811 coordinated transcriptional regulation in gene expression
2813 http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
2815 * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
2816 Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
2817 Metagenomics and RNA-seq
2818 http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
2820 * GNU Parallel was cited in: Sequencing the cap-snatching repertoire
2821 of H1N1 influenza provides insight into the mechanism of viral
2822 transcription initiation
2823 http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
2825 * GNU Parallel was cited in: Genome assembly using Nanopore-guided
2826 long and error-free DNA reads
2827 http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
2829 * GNU Parallel was used (unfortunately with wrong citation) in:
2830 Comparing the CarbonTracker and TM5-4DVar data assimilation systems
2831 for CO2 surface flux inversions
2832 http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
2834 * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
2835 https://bitbucket.org/srp33/gsoa
2837 * A Quick and Neat :) Orchestrator using GNU Parallel
2838 http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
2840 * Execute commands on multiple computers using GNU Parallel (setting
2841 up a cluster on the cheap)
2842 https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
2844 * Functions and GNU parallel for effective cluster load management
2845 http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
2847 * Use parallel processing to save time importing databases
2848 http://drupalsun.com/node/41854
2850 * Run multiple ssh commands in parallel with GNU Parallel
2851 http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
2853 * Importing huge databases faster
2854 https://www.lullabot.com/blog/article/importing-huge-databases-faster
2856 * Parallel? Gnu parallel! https://debian.pro/1834
2858 * Bug fixes and man page updates.
2863 New in this release:
2865 * Security fix. An attacker on the local system could make you
2866 overwrite one of your own files with a single byte. The problem
2867 exist when you use --compress or --tmux or --pipe or --cat or
2868 --fifo. The attacker must figure out the randomly chosen file name
2869 and create a symlink within a time window of 15 ms.
2871 * --shuf will generate all jobs, and shuffle them before running
2872 them. This is useful to get a quick preview of the results before
2873 running the full batch.
2875 * GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
2877 * GNU Parallel was cited in: Scaling Machine Learning for Target
2878 Prediction in Drug Discovery using Apache Spark
2879 https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
2881 * GNU Parallel was cited in: Bayesian inference of protein structure
2882 from chemical shift data https://peerj.com/articles/861/
2884 * GNU Parallel was cited in: Toward Enhanced Metadata Quality of
2885 Large-Scale Digital Libraries: Estimating Volume Time Range
2886 https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
2888 * GNU Parallel was cited in: Experimental study on the Wind Farm
2889 Substation Cable Installation Problem
2890 http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
2892 * GNU Parallel was used in: https://github.com/KAPPS-/landsat-gifworks
2894 * GNU Parallel was used in: https://github.com/exascience/elprep
2896 * GNU Parallel was used in:
2897 http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
2899 * GNU Parallel was used in:
2900 http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
2902 * GNU Parallel was used in: Rapid haploid SNP calling
2903 https://github.com/tseemann/snippy
2905 * Pictures and Metadata
2906 http://www.ozzy.no/2015/02/05/pictures-and-metadata/
2908 * Task automation with bash and parallel
2909 https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
2911 * How To: Speed Up File Transfers in Linux using RSync with GNU
2913 http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
2915 * Mirroring a Git Repository
2916 https://avacariu.me/articles/mirroring-a-git-repository.html
2918 * Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
2919 https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
2922 http://www.zhihu.com/question/29257300
2924 * Bug fixes and man page updates.
2929 New in this release:
2931 * --number-of-cores respects 'taskset' on GNU/Linux.
2933 * --joblog --pipe gives the data send and received in the log.
2935 * GNU Parallel was tested to support 100 GB sized records in --pipe. A
2936 few bugs was fixed to support >2 GB records. It works, but is rather
2939 * GNU Parallel was cited in: RIG: Recalibration and Interrelation of
2940 genomic sequence data with the GATK
2941 http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
2943 * GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
2944 Improving metagenomic analysis with high performance classification
2945 and wide taxonomic attachment
2946 http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
2948 * GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
2949 shaped by declining effective population size
2950 http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
2952 * GNU Parallel was cited in: Evidence for DCO+ as a probe of
2953 ionization in the warm disk surface
2954 http://arxiv.org/pdf/1503.02659.pdf
2956 * GNU Parallel was cited in: De novo assembly and annotation of the
2957 Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
2958 from raw genomic reads and comparative analysis with the yellow
2959 fever mosquito (Aedes aegypti)
2960 http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
2962 * GNU Parallel was cited in: A General Approach to Network
2963 Configuration Analysis
2964 http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
2966 * GNU Parallel was cited in: Scrimer: designing primers from
2968 http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
2970 * GNU Parallel was cited in: Efficient Retrieval of Key Material for
2971 Inspecting Potentially Malicious Traffic in the Cloud
2972 http://sacko.uk/pdf/2015.1.pdf
2974 * GNU Parallel will be presented at Strataconf: Poor Man's Parallel
2976 http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
2978 * GNU Parallel was used in:
2979 https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
2981 * GNU Parallel was used in: https://github.com/martymac/fpart
2983 * GNU Parallel was used in:
2984 https://github.com/hoytak/diabetic-retinopathy-code
2986 * GNU Parallel was used in:
2987 https://github.com/mehmattski/HybSeqPipeline
2989 * GNU Parallel was used in:
2990 http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
2992 * Using GNU Parallel on a Raspberry Pi cluster:
2993 http://www.dcglug.org.uk/cluster-progress/
2995 * An introduction to vector tiling and map reduce in postgis:
2996 http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
2998 * Running scripts in parallel with GNU Parallel:
2999 http://code.jasonbhill.com/2015/03/
3001 * Mahout: Parallelising the creation of DecisionTrees:
3002 http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
3004 * High-Performance Scientific Computing: Running serial jobs in
3006 https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
3008 * Parallel cardinality on your laptop
3009 https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
3011 * Experiments about a better locate using grep
3012 http://a3nm.net/blog/better_locate.html
3014 * Homework with GNU Parallel:
3015 https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
3017 * Parallel - Jobs in Skripten parallelisieren:
3018 https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
3020 * GNU Parallel, czyli 100% użycia procesora
3021 http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
3023 * Bug fixes and man page updates.
3028 * --tmux has gotten a major overhaul.
3030 * GNU Parallel was cited in: RaftLib: A C++ Template Library for High
3031 Performance Stream Parallel Processing
3032 http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
3034 * GNU Parallel was cited in: Quantifying properties of hot and dense
3035 QCD matter through systematic model-to-data comparison
3036 http://arxiv.org/pdf/1502.00339.pdf
3038 * GNU Parallel was cited in: Towards Collaborative Exploration and
3039 Analysis of Big Data from Mars: A Noachis Terra Case Study
3040 http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
3042 * GNU Parallel was used (unfortunately with wrong citation) in:
3043 Performance and Scaling Comparison Study of RDBMS and NoSQL
3045 http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
3047 * GNU Parallel was used (unfortunately without citation) in: Parallel
3048 Implementation of Big Data Pre-Processing Algorithms for Sentiment
3049 Analysis of Social Networking Data
3050 http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
3052 * GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
3053 Ultra-fast personal genome analysis and interpretation
3054 http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
3056 * Zip Folders with GNU Parallel
3057 http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
3059 * Using GNU Parallel with Freesurfer
3060 http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
3062 * GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
3064 * Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
3066 * Bug fixes and man page updates.
3071 * Remote jobs now send stderr (standard error) to stderr (standard
3072 error) instead of stdout (standard output).
3074 * Remote execution command is now packed using base64 encoded
3075 bzip2. This means that big environments (app. 100 KB) can be
3076 transferred. This change makes remote execution alpha quality.
3078 * --semaphoretimeout now takes a negative value. This means give up if
3079 the semaphore is not gotten within the timeout.
3081 * --halt -1 and -2 now means halt if a job succeeds (so the opposite
3084 * --no-keep-order will reverse --keep-order.
3086 * Bash's second fix of shellshock caused --env to break again when
3087 exporting functions. This has been fixed again.
3089 * A semibig refactoring of big functions. All non-trivial functions
3090 are now less than 100 lines. The refactoring makes this release beta
3093 * A description of the design decisions for GNU Parallel can be found
3094 in 'man parallel_design'.
3096 * A bug fix in replacement strings caused rewrite of the replacement
3097 function. This makes use of replacement strings alpha quality.
3099 * GNU Parallel was cited in: Improving Energy and Performance with
3100 Spintronics Caches in Multicore Systems
3101 http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
3103 * GNU Parallel was cited in: Parallel post-processing with MPI-Bash
3104 http://dl.acm.org/citation.cfm?id=2691137
3106 * GNU Parallel was cited in: Distinguishing cause from effect using
3107 observational data: methods and benchmarks
3108 http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
3110 * GNU Parallel was cited in: Data Science at the Command Line
3111 http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
3113 * GNU Parallel was cited in: Resolution of Genetic Map Expansion
3114 Caused by Excess Heterozygosity in Plant Recombinant Inbred
3115 Populations http://www.g3journal.org/content/4/10/1963.full.pdf
3117 * GNU Parallel was cited in: Bayesian Inference of Protein Structure
3118 from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
3120 * GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
3121 in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
3123 * GNU Parallel was cited in: Computação Verde na Camada de Aplicação
3124 https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
3126 * GNU Parallel was cited in: Frameshift alignment: statistics and
3127 post-genomic applications
3128 http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
3130 * GNU Parallel was cited in: Towards Recommender Engineering Tools and
3131 Experiments for Identifying Recommender Differences
3132 http://elehack.net/research/thesis/mde-thesis.pdf
3134 * GNU Parallel was cited in: Speaker Environment Classification Using
3135 Rhythm Metrics in Levantine Arabic Dialect
3136 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
3138 * GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
3139 http://arxiv.org/pdf/1501.02155.pdf
3141 * GNU Parallel was cited in: Allocation Policy Analysis for Cache
3142 Coherence Protocols for STT-MRAM-based caches
3143 http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
3145 * GNU Parallel was cited in: Using Trusted Platform Module for
3146 securing virtual environment access in Cloud
3147 http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
3149 * GNU Parallel was cited in: Weakly Supervised Learning for
3150 Compositional Sentiment Recognition
3151 http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
3153 * GNU Parallel was cited in: Agility and Performance in Elastic
3154 Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
3156 * GNU Parallel was used (unfortunately without citation) in: Large
3157 Scale Author Name Disambiguation in Digital Libraries
3158 http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
3160 * GNU Parallel is used in BEDOPS:
3161 https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
3163 * Job ad asking for GNU Parallel skills:
3164 http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
3166 * GNU Parallel: Open Source For You (OSFY) magazine, October 2013
3168 http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
3170 * Multithreaded Encryption and Compression
3171 http://www.krazyworks.com/multithreaded-encryption-and-compression/
3173 * GNU Parallel on OSX and Linux
3174 https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
3176 * How to build gnu parallel from source on Ubuntu PC?
3177 http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
3179 * GNU parallel for openaddr-process-one
3180 https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
3182 * From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
3184 * Software Development Tooling
3185 http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
3187 * コマンドを並列に実行するGNU parallelがとても便利
3188 http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
3190 * Bug fixes and man page updates.
3195 * Remote systems can be divided into hostgroups (e.g. web and db) by
3196 prepending '@groupname/' to the sshlogin. Multiple groups can be
3197 given by separating groups with '+'. E.g. @web/www1 @web+db/www2
3200 * Remote execution can be restricted to servers that are part of one
3201 or more groups by '@groupname' as an sshlogin. Multiple groups can
3202 be given by separating groups with '+'. E.g. -S @web or -S @db+web
3204 * With --hostgroup you can restrict arguments to certain hostgroups by
3205 appending '@groupname' to the argument. Multiple groups can be
3206 given by separating groups with '+'. E.g. my_web_arg@web
3207 db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
3208 developing a prototype for this.
3210 * GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
3211 Massively Parallel Sequencing Data Analysis using Hadoop
3212 http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
3214 * GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
3215 the Histological Quantification of Whole Slide Images
3216 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
3218 * GNU Parallel was cited in: Exploring a multiprocessor design space
3219 to analyze the impact of using STT-RAM in the memory hierarchy
3220 http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
3222 * Command-Line OCR with Tesseract on Mac OS X
3223 https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
3225 * Bug fixes and man page updates.
3230 * --env was changed to deal with Bash's new way of exporting a function.
3232 * GNU Parallel was cited in: Exclusion of cosmic rays in
3233 protoplanetary disks. II. Chemical gradients and observational
3234 signatures http://iopscience.iop.org/0004-637X/794/2/123/article
3236 * GNU Parallel was cited in: Application of Machine Learning to
3237 Algorithm Selection for TSP
3238 http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
3240 * GNU Parallel was cited in: Performance Models for LTE-Advanced
3242 http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
3244 * GNU Parallel was used (unfortunately without citation) in: De Novo
3245 Insertions and Deletions of Predominantly Paternal Origin Are
3246 Associated with Autism Spectrum Disorder
3247 http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
3249 * GNU Parallel was determined 'popular' by Statistical Analysis of
3250 Popular Open Source Software Projects and Their Communities
3251 http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
3253 * GNU Parallel is demonstrated in: Data Science at the Command Line:
3254 Facing the Future with Time-Tested Tools
3256 * GNU Parallel was covered in a talk at Sydney Perl Mongers group
3257 http://www.openfusion.net/talks/pwp/#24
3259 * GNU Parallel and how to get started with it
3260 http://www.jduck.net/blog/2014/09/30/gnu-paralell/
3262 * Behat/Selenium/Parallel
3263 http://jaffamonkey.com/behat-selenium-parallel/
3265 * Comparing Golang, Scala, Elixir and Ruby for ETL
3266 http://www.dimroc.com/2014/09/29/etl-language-showdown/
3268 * Assemble a list of which of these hosts are up or down
3269 http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
3271 * Running commands on many nodes simultaneously
3272 http://opsfun.wordpress.com/2014/03/31/19/
3274 * Ubuntu 13.04でGNU ParallelをGNUモードで動かす
3275 http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
3277 * Bug fixes and man page updates.
3282 * If the file given as --sshloginfile is changed it will be re-read
3283 when a job finishes though at most once per second. This makes it
3284 possible to add and remove hosts while running.
3286 * Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
3288 * OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
3290 * GNU Parallel was presented at Balti and Bioinformatics "On-Air"
3291 http://youtu.be/UtXlr19xTh8?t=2h5m0s
3293 * Pleiades Plus uses GNU Parallel
3294 https://github.com/ryanfb/pleiades-plus
3296 * Imagemagick and GNU Parallel
3297 http://deepdish.io/2014/09/15/gnu-parallel/
3299 * GNU Parallel (Sebuah Uji Coba)
3300 http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
3302 * GNU Parallel: 并行执行Linux命令
3303 http://blog.csdn.net/xzz_hust/article/details/39183837
3308 * GNU Parallel now uses the same shell it was started from as the
3309 command shell for local jobs. So if GNU Parallel is started from
3310 tcsh it will use tcsh as its shell even if the login $SHELL is
3311 different. For remote jobs the login $SHELL will be used.
3313 * The whole current environment in bash can be copied by using a shell
3314 wrapper function (Search manual for env_parallel).
3316 * --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
3317 {...} {/..} {/...}. The idea being that '+foo' matches the opposite
3318 of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
3319 = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
3321 * GNU Parallel now deals correctly with the combination
3322 rsync-3.1.X-client and rsync-2.5.7-server
3324 * GNU Parallel was cited in: A Web Service for Scholarly Big Data
3325 Information Extraction
3326 http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
3328 * Comparison of the speed of different GNU Parallel versions:
3329 http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
3331 * GNU Parallel was covered in the webcast 2014-08-20: Data Science at
3332 the Command Line http://www.oreilly.com/pub/e/3115
3334 * Distributed processing with GNU parallel
3335 http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
3337 * A Peek into GNU Parallel
3338 http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
3340 * Сборка GNU parallel для CentOS/RHEL
3341 http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
3343 * Bug fixes and man page updates.
3348 * {= perl expression =} can be used as replacement string. The
3349 expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
3350 the string. This makes replacement strings extremely flexible.
3352 * Positional perl expressions (similar to {2}) are given as {=2 perl
3353 expression=} where 2 is the position.
3355 * One small backwards incompatibility: {1}_{2} will replace {2} with
3356 the empty string if there is only one argument. Previously {2} would
3357 have been left untouched.
3359 * Replacement strings can be defined using --rpl. E.g. parallel --rpl
3360 '{.gz} s/\.gz$//' echo {.gz} ::: *.gz
3362 * The parenthesis around {= perl expression =} can be changed with
3365 * --tmux will direct the output to a tmux session instead of
3366 files. Each running jobs will be in its own window.
3368 * --halt 10% will stop spawning new jobs if 10% failed so far.
3370 * GNU Parallel was cited in: bammds: A tool for assessing the ancestry
3371 of low depth whole genome data using multidimensional scaling (MDS)
3372 http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
3374 * GNU Parallel was cited in: Molecular ferroelectric contributions to
3375 anomalous hysteresis in hybrid perovskite solar cells
3376 http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
3378 * GNU Parallel was cited in: Energy Sorghum-a genetic model for the
3379 design of C4 grass bioenergy crops
3380 http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
3382 * GNU Parallel was cited in: Web-scale Content Reuse Detection
3383 www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
3385 * Tell your friends to sign up for the Webcast at 2014-08-20 covering
3386 GNU Parallel: Data Science at the Command Line
3387 http://www.oreilly.com/pub/e/3115
3389 * GNU Parallel all the things!
3390 http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
3392 * Shell command composition and dispatch
3393 http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
3395 * Parallelising plink (or anything else) the easy way
3396 http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
3398 * Easy and cheap cluster building on AWS
3399 https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
3401 * Paralelizace běžných činností v konzoli pomocí GNU Parallel
3402 http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
3404 * [原] Ubuntu 下使用 parallel 命令的注意事项
3405 http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
3407 * 简单的并行, 可使用GNU parallel
3408 http://jerkwin.github.io/2014/06/10/GNU-parallel/
3410 * Bug fixes and man page updates.
3415 * --shebang and --shebang-wrap now works on FreeBSD.
3417 * --pipepart works with --header, --regexp, --cat and --fifo.
3419 * ./configure --disable-documentation will not build documentation.
3421 * {%} works as job slot.
3423 * GNU Parallel was cited in: Energy Efficient, High-speed
3424 Communication in WSNs
3425 https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
3427 * GNU Parallel was cited in: Ferroelectric contributions to anomalous
3428 hysteresis in hybrid perovskite solar cells
3429 http://arxiv.org/pdf/1405.5810.pdf
3431 * Processes Paralleling to Speed up Computing and Tasks Execution in
3433 http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
3435 * Moving / Copying lots of s3 files quickly using gnu parallel
3436 http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
3438 * Speeding up grep log queries with GNU Parallel
3439 http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
3441 * Ubuntu - Gnu parallel - It's awesome
3442 http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
3444 * Export quicklooks with vector overlay using TuiView
3445 http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
3447 * GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
3449 * GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
3451 * Bug fixes and man page updates.
3456 * Use --semaphoretimeout to ignore the semaphore lock after a while.
3458 * {%} introduced as job slot replacement string. It has known bugs.
3460 * --slotreplace changes slot replacement string.
3462 * GNU Parallel officially in Solaris 11.2beta
3463 https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
3465 * GNU Parallel was cited in: A Comparison of Antenna Placement
3466 Algorithms http://abhinavjauhri.com/publications/eap.pdf
3468 * Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
3469 https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
3471 * BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
3473 * Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
3475 * Convert FLAC to MP3 with GNU parallel
3476 http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
3478 * JD Edwards Business Function Documentation
3479 http://www.azertech.net/content/jd-edwards-business-function-documentation
3481 * Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
3483 * How I start a bioinformatics project
3484 http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
3486 * No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
3488 * Bug fixes and man page updates.
3493 * --pipepart is a highly efficient alternative to --pipe if the input
3494 is a real file and not a pipe.
3496 * If using --cat or --fifo with --pipe the {} in the command will be
3497 replaced with the name of a physical file and a fifo respectively
3498 containing the block from --pipe. Useful for commands that cannot
3499 read from standard input (stdin).
3501 * --controlmaster has gotten an overhaul and is no longer
3504 * --env is now copied when determining CPUs on remote system. Useful
3505 for copying $PATH if parallel is not in the normal path.
3507 * --results now chops the argument if the argument is longer than the
3508 allowed path length.
3510 * Build now survives if pod2* are not installed.
3512 * The git repository now contains tags of releases.
3514 * GNU Parallel was cited in: Proactive System for Digital Forensic
3516 http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
3518 * GNU Parallel was cited in: Beyond MAP estimation with the
3519 track-oriented multiple hypothesis tracker
3520 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
3522 * GNU Parallel was cited in: Prokka: rapid prokaryotic genome
3524 http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
3526 * GNU Parallel was used (unfortunately with improper citation) in:
3527 Perspectives in magnetic resonance: NMR in the post-FFT era
3528 http://www.sciencedirect.com/science/article/pii/S1090780713003054
3530 * GNU Parallel is used in https://github.com/cc2qe/speedseq
3532 * Batch XML validation at the command line.
3533 http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
3535 * freebayes-parallel uses GNU Parallel
3536 https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
3538 * Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
3540 * Speeding Up Grep Log Queries with GNU Parallel
3541 http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
3543 * How to run tbss_2_reg in parallel
3544 http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
3546 * GNU parallel example: blastn https://asciinema.org/a/8775
3548 * Iterative DNS Brute Forcing
3549 http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
3551 * Ejecutando comandos en paralelo
3552 http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
3554 * Ejecutando en paralelo en bash (ejemplo con rsync)
3555 http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
3557 * Bug fixes and man page updates.
3562 * Offical package for Alpine Linux now exists:
3563 http://alpinelinux.org/apk/main/x86/parallel
3565 * GNU Parallel was cited in: Estimating uncertainties in statistics
3566 computed from direct numerical simulation
3567 http://dx.doi.org/10.1063/1.4866813
3569 * GNU Parallel was cited in: Vehicle routing problems with time
3570 windows and multiple service workers: a systematic comparison
3571 between ACO and GRASP
3572 http://link.springer.com/article/10.1007/s10100-014-0341-z
3574 * GNU Parallel, quick and easy
3575 http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
3577 * Using Multiple CPU Cores With Command Line Tools
3578 http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
3580 * Batch convert mp3 CBR to VBR
3581 http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
3583 * Running Behat in parallel with Selenium grid
3584 http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
3586 * Git-Mirror per cronjob aktuell halten
3587 https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
3589 * Пишем многопоточный скрипт на bash
3590 http://dafter.ru/duf/howto/130.html
3592 * 如何利用多核CPU来加速你的Linux命令
3593 http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
3595 * Bug fixes and man page updates.
3600 * --tollef has been retired.
3602 * --compress has be redesigned due to bugs.
3604 * Format of --eta and --joblog has changed slightly.
3606 * GNU Parallel was cited in: Speaker Verification and Keyword Spotting
3607 Systems for Forensic Applications
3608 http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
3610 * GNU Parallel was cited in: Scaleable Code Clone Detection
3611 http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
3613 * GNU Parallel was cited in: Clone Detection that scales
3614 http://scg.unibe.ch/archive/masters/Vogt14a.pdf
3616 * GNU Parallel was cited in: Scalable Positional Analysis for Studying
3617 Evolution of Nodes in Networks
3618 http://arxiv-web3.library.cornell.edu/pdf/1402.3797
3620 * GNU Parallel was cited in: Aggregate Characterization of User
3621 Behavior in Twitter and Analysis of the Retweet Graph
3622 http://arxiv.org/pdf/1402.2671v1
3624 * GNU Parallel was used (unfortunately without citation) in: Causal
3625 Network Models for Predicting Compound Targets and Driving Pathways
3627 http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
3629 * GNU Parallel was used (unfortunately without citation) in:
3630 Performance and Energy Efficiency of Common Compression /
3631 Decompression Utilities
3632 http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
3634 * GNU Parallel was used (unfortunately without citation) in: SpringFS:
3635 Bridging Agility and Performance in Elastic Distributed Storage
3636 http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
3638 * GNU Parallel was recommended (without citation) in: Redesigning the
3639 Specificity of Protein-DNA Interactions with Rosetta
3640 http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
3642 * GNU Parallel is co-distributed with RepeatExplorer
3643 http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
3645 * Convert MP3 to a scrolling spectrum waterfall plot video
3646 http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
3648 * PHP wrapper class for the GNU Parallel tool
3649 https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
3651 * Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
3653 * Copias de archivos con rsync y parallel
3654 http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
3656 * Single-Thread-Programme auf Multicore-Rechnern parallelisieren
3657 http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
3659 * Распараллеливаем процессы для ускорения вычислений и выполнения
3660 заданий в Linux http://savepearlharbor.com/?p=210480
3662 * Bug fixes and man page updates.
3667 * GNU Parallel was cited in: On the likelihood of multiple bit upsets
3669 http://arxiv-web3.library.cornell.edu/pdf/1401.1003
3671 * HaploClique uses GNU Parallel
3672 https://github.com/armintoepfer/haploclique
3674 * Scraping NSScreencast
3675 https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
3677 * 30 Cool Open Source Software I Discovered in 2013
3678 http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
3680 * [Unix] 13. The power of doing things in Parallel
3681 http://leetaey.tistory.com/384
3683 * Parallel the execution of a job that read from stdin
3684 http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
3686 * Mon Make à moi (6:38-11:50)
3687 http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
3689 * Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
3690 effizienter in der Shell arbeiten
3691 https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
3693 * Summary of GNU Parallel tutorial
3694 http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
3696 * Bug fixes and man page updates.
3701 * GNU Parallel now has a motto: For people who live life in the
3704 * Detect if the buffer dir $TMPDIR runs out of space. This changes a
3705 central piece of code, making this release alpha quality.
3707 * --keep-order --(n)onall will sort according to the sshlogin.
3709 * Detect the number of CPUs on DEC Tru64.
3711 * GNU sql: --list-tables for sqlite3.
3713 * GNU Parallel was cited in: Variational Message-Passing: Extension to
3714 Continuous Variables and Applications in Multi-Target Tracking
3715 http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
3717 * GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
3719 https://www.duo.uio.no/handle/10852/37431
3721 * GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
3723 http://repositorio.ul.pt/handle/10451/9436
3725 * GNU Parallel was cited in: Diacritization, automatic segmentation
3726 and labeling for Levantine Arabic speech
3727 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
3729 * GNU Parallel was cited in: Investigation of emotion classification
3730 using speech rhythm metrics
3731 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
3733 * GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
3734 and Non-Native Speaking Styles
3735 http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
3737 * GNU Parallel was cited in: Evolutionary optimization of wetlands
3739 http://dl.acm.org/citation.cfm?id=2480400
3741 * GNU Parallel was cited (unfortunately with wrong citation) in:
3742 RDBMS vs NoSQL: Performance and Scaling Comparison
3743 http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
3745 * GNU Parallel was used (without proper citation) in: Comprehensive
3746 Analysis Pipeline for Discovery of Human Genetic Variation
3747 http://www.google.com/patents/US20130311106
3749 * Encrypt and decrypt in parallel with GPG
3750 http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
3752 * Using GNU Parallel to create a SVM classifier
3753 http://ivanyu.me/blog/2013/12/01/parallel/
3755 * Parallel xz compression
3756 http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
3758 * Got CPUs to burn? Put 'em to work with GNU parallel
3759 http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
3762 http://pastebin.com/JmnB9ffq
3764 * Gnu Parallel for fun and profit
3765 https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
3767 * Parallelization of Exploitation
3768 http://rantsideasstuff.com/parallelization-of-exploitation/
3770 * Running assemblies in parallel
3771 https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
3773 * Procesando la contabilidad del PP
3774 http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
3776 * Mon make à moi (French)
3777 http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
3779 * Bug fixes and man page updates.
3784 * A citation notice is printed on stderr only if stderr is a terminal,
3785 the user has not specified --no-notice and the user has not run
3786 --bibtex once. This makes the release alpha quality.
3788 * --compress will compress temporary files. If the output is big and
3789 very compressible this will take up less disk space in $TMPDIR and
3790 possibly be faster due to less disk I/O.
3792 * --compress-program comtrols which program to use for compressing
3795 * --bar show progress as a progress bar compatible with zenity.
3797 * --resume can now be used with --result: Jobs already run will be
3800 * --transfer and --basefile support paths relative to the --workdir by
3801 inserting /./ into the path.
3803 * GNU Parallel was cited in: fastphylo: Fast tools for phylogenetics
3804 http://www.biomedcentral.com/1471-2105/14/334/abstract
3806 * Using GNU parallel
3807 http://davetang.org/muse/2013/11/18/using-gnu-parallel/
3809 * Techlux - GNU - Parallel (German)
3810 https://techlux.de/blog/2013/11/07/gnu-parallel/
3812 * awk, sed, bzip2, grep, wc на всех ядрах
3813 http://vk.com/page-30666517_45528467
3815 * 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
3816 http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
3818 * GNU Parallel (Japanese)
3819 http://jarp.does.notwork.org/diary/201311b.html#20131117
3821 * Bug fixes and man page updates.
3826 * --transfer files with /./ in the path will copy the files relative
3829 * The maximal command length is now cached in a file halfing the
3832 * GNU Parallel was cited in: Investigating speaker gender using rhythm
3833 metrics in Arabic dialects
3834 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
3836 * GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
3837 lastensuojelun asiakaskertomuksista
3838 https://tampub.uta.fi/handle/10024/84978
3840 * Some Additional Useful Bioinformatics Software
3841 http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
3843 * GNU Parallel Example Screen Cast (bil to Geotiff conversion)
3844 http://www.youtube.com/watch?v=PpF27eC7Mys
3846 * Using GNU Parallel to roll-your-own Map Reduce!
3847 http://www.rankfocus.com/hello-world/
3849 * Use multiple CPU Cores with your Linux commands
3850 http://www.rankfocus.com/use-cpu-cores-linux-commands/
3852 * Using GNU Parallel at HPC @ Uni.lu
3853 https://hpc.uni.lu/users/use_cases/
3855 * Scaling up with parallelization
3856 https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
3858 * How to teach yourself to be a technical tester
3859 http://infiniteundo.com/post/62421363463/qa-toc
3861 * Faster Rasters For All
3862 http://2013.foss4g.org/conf/programme/presentations/52/
3864 * Optimizing translated file downloads
3865 http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
3867 * EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
3868 http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
3870 * Best Practices for Amazon EMR
3871 http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
3873 * Computing checksums for backup
3874 https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
3876 * Un exemplu de utilizare a programului GNU parallel
3877 http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
3880 http://www.slideshare.net/drakeguan/part1-23705978
3882 * なんか気持ちよかです Gnu Parallel
3883 http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
3885 * Bug fixes and man page updates.
3890 * PDF-files of documentation is now included.
3892 * Cloning at warp speed 100 VMs in 1 minute using one command line
3893 http://www.beebotech.com.au/tag/command-line/
3895 * Calcul Quebec's introduction to GNU Parallel
3896 https://wiki.calculquebec.ca/w/GNU_parallel
3898 * Brincando com o GNU parallel
3899 http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
3901 * GNU Parallelで並列処理を行う
3902 http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
3904 * Bug fixes and man page updates.
3909 * A tutorial showing much of GNU Parallel's functionality. Spend an
3910 hour walking through the tutorial. Your commandline will love you
3911 for it. man parallel_tutorial
3913 * --line-buffer will buffer output on line basis. --group keeps the
3914 output together for a whole job. --ungroup allows output to mixup
3915 with half a line coming from one job and half a line coming from
3916 another job. --line-buffer fits between these two; it prints a full
3917 line, but will allow for mixing lines of different jobs.
3919 * --record-env records all variables and functions set. Useful to
3920 record the normal environment before using --env _.
3922 * --env _ exports all functions and variables to the remote server
3923 except for the ones recorded.
3925 * New signing key. Due to recommendations from NIST
3926 http://www.keylength.com/en/4/ the signing key was changed from
3927 1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
3929 * Agalma: an automated phylogenomics workflow
3930 http://arxiv.org/pdf/1307.6432
3932 * Job ad asking for GNU Parallel expertise
3933 http://seattle.craigslist.org/est/sof/4006079352.html
3935 * Transient Beowulf Clustering with GNU Parallel and SSHfs
3936 http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/
3938 * Aligning to unique regions
3939 http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/
3941 * Top 10 scripting tricks for basic bioinformatics
3942 http://students.washington.edu/bowmanjs/wordpress/?p=873
3944 * Using GNU Parallel to speed up and simplify data analyzes
3945 http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/
3947 * Compression of files in parallel using GNU parallel
3948 http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html
3950 * Using GNU Parallel with Amazon
3951 media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
3953 * Some useful comments on GNU Parallel
3954 https://news.ycombinator.com/item?id=6209767
3956 * Using GNU Parallel to count reads mapping to genes for multiple BAMs
3957 http://drduanehassane.com/blog/sequencing-resources
3959 * TimeMachineっぽいバックアップスクリプト
3960 http://rio.tc/2013/07/timemachine-1.html
3962 * GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
3963 http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab
3965 * Bug fixes and man page updates.
3970 * --round-robin with --pipe will write all blocks to already running
3973 * --env can now transfer Bash function for remote execution. That is
3976 * GNU Parallel was used (unfortunately with improper citation) in:
3977 Understanding the Impact of E-Commerce Software on the Adoption of
3978 Structured Data on the Web
3979 http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1
3981 * GNU Parallel was used (unfortunately with improper citation) in:
3982 CWI at TREC 2012, KBA track and Session Track
3983 http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf
3985 * Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
3986 Interactions through Optimal Wall Shaping.
3987 http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653
3989 * Using GNU parallel to convert images.
3990 http://www.brunokim.com.br/blog/?p=18
3992 * A quick way to parallelize.
3993 http://timotheepoisot.fr/2013/07/08/parallel/
3995 * GNU Parallel 20130522 ('Rana Plaza') 发布,并行作业执行.
3996 http://www.open-open.com/news/view/371301
3998 * Quite a few bug fixes and man page updates.
4003 * --xapply now recycles arguments if an input source has more
4004 arguments than others.
4006 * The sleep time between jobs is now both increased and decreased
4009 * 10 seconds installation check the signature using GnuPG if GnuPG is
4012 * Developer job asking for GNU Parallel expertise.
4013 http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central
4015 * A small utility program to run youtube-dl in parallel.
4016 https://github.com/dlh/youtube-dl-parallel
4018 * Parallelizing Freesurfer:
4019 http://blog.cogneurostats.com/?p=148
4021 * Bug fixes and man page updates.
4026 * --ctrlc is now default if --pipe is not used; thus making it
4027 possible to kill remotely started jobs simply by pressing Ctrl-C.
4029 * --timeout 200% now means kill jobs that take more than twice the
4030 time of the median run time of a job.
4032 * Jobs are now distributed round robin when having mulitiple
4033 --sshlogin instead of filling up one --sshlogin at a time.
4035 * niceload: darwin version of --io --mem --swap. Thanks to Anders F
4038 * Bug fixes and man page updates.
4043 * 10 seconds installation: wget -O - pi.dk/3 | sh
4045 * HPUX CPU/core detection. Thanks to Javier Tarradas.
4047 * CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
4049 * --ctrlc will send SIGINT to tasks running on remote computers and
4052 * --load now uses 'ps' to see immediately see the number of running
4053 processes instead of 'uptime' thus making --load react much faster.
4055 * Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
4056 bugs. Some of these required quite extensive changes making this
4057 release beta quality.
4059 * --retries works with --onall.
4061 * The new --load computation now works on FreeBSD 7.
4063 * --nice works under tcsh.
4065 * GNU Parallel is officially supported in NetBSD.
4066 http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html
4068 * GNU Parallel is accepted for openSUSE.
4069 http://software.opensuse.org/package/gnu_parallel
4071 * GNU Parallel can be installed under Microsoft Windows (CygWin).
4072 http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx
4074 * Excuses for not installing GNU Parallel.
4075 http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html
4077 * Job advert that requires GNU Parallel competence.
4078 http://versium.com/about/careers/
4080 * Parallelizing Batch Jobs for Fun and Profit.
4081 http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
4083 * Processing Transcription Start Sites(TSS) for the entire Mouse genome.
4084 http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/
4086 * GNU parallel is used throughout Scrimer.
4087 http://scrimer.readthedocs.org/en/latest/
4089 * GNU Parallel helped making public documents searchable.
4090 http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html
4092 * Identifying big movie files (German).
4093 http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/
4095 * Bug fixes and man page updates.
4100 * --resume works with --pipe.
4102 * --resume-failed will go through --joblog, redo the failed jobs and
4103 then continue like --resume.
4105 * Negative positional arguments count from the end: {-1} means the
4106 last argument, {-2} the second to last.
4108 * NetBSD CPU detection.
4110 * --blocksize increases exponentially if it smaller than a full
4113 * Processing n-line records (--pipe -L n) is now much faster.
4115 * --tollef is obsoleted after discussion on the mailing list.
4117 * GNU Parallel is the highest rated tool on:
4118 http://www.biostars.org/show/tools/?sort=votes&since=all%20time
4120 * GNU Parallel was loved during FSFE's #ilovefs campaign.
4121 http://fsfe.org/news/2013/news-20130212-01.en.html
4123 * Using GNU Parallel with s3cmd (Japanese).
4124 http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html
4126 * Intro to GNU Parallel (Chinese).
4127 http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/
4129 * Bug fixes and man page updates.
4134 * --sshdelay Delay starting next ssh by secs seconds. GNU parallel
4135 will pause secs seconds after starting each ssh. secs can be less
4138 * Official OpenBSD port:
4139 http://ftp.openbsd.org/ports/sysutils/parallel/
4141 * Official DragonFlyBSD package:
4142 http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/
4144 * Post about niceload in Hungarian:
4145 http://commandline.blog.hu/2013/01/02/niceload
4147 * 自炊スキャンデータをKobo Gloに最適化
4148 http://interstadial.wordpress.com/2013/01/20/
4150 * GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
4151 http://oshiire.to/archives/1686
4153 * Bug fixes and man page updates.
4158 * --shebang-wrap makes is possible to parallelize scripts by putting
4159 parallel in the shebang line (the first #! line in scripts).
4161 * --delay puts in a delay after starting each job. Useful to avoid
4162 raceconditions and thundering herd problems.
4164 * --results now uses / as separator instead of TAB and thus creates
4165 subdirs. Thanks to Drew Frank.
4167 * parallel: OpenBSD CPU detection. Thanks to Michał Markowski.
4169 * niceload --sensor allows for negative numbers to signify a lower
4170 number means the limit is lower.
4172 * niceload --prg suspend a named program that is already running.
4174 * niceload multiple --pid suspend process ids that are already running.
4176 * Convertir des images avec find et imagemagick
4177 http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html
4179 * Bug fixes and man page updates.
4184 * niceload --sensor makes it possible to use a program to control if a
4185 program should be suspended.
4187 * GNU Parallel was part of the justification for Nordic Free Software
4189 https://fsfe.org/news/2012/news-20121112-01.html
4191 * Dateien schneller packen und konvertieren mit GNU parallel
4192 http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel
4194 * Processing images from Lunar Reconnaissance Orbiter Narrow Angle
4195 Camera http://lunokhod.org/?p=774
4197 * GNU Parallel is used in types2: Type and Hapax Accumulation Curves
4198 http://www.cs.helsinki.fi/u/josuomel/types2/
4200 * GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
4201 PCA-based system for Dictionary Learning and Encoding for Robust
4203 http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
4204 http://www.cse.iitm.ac.in/~mrsri/ppca.pdf
4206 * Mapreduce avec parallel, cat et une redirection
4207 http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection
4209 * GNU Parallel for Large Batches of Small Jobs
4210 https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf
4212 * GNU Parallel used in black belt tip (8:50-10:12)
4213 https://aws.amazon.com/apac/awspodcast/episode20/
4215 * Bug fixes and man page updates.
4220 * --results structures output files so they can be imported using
4221 Pandas (http://pandas.pydata.org/). Useful when doing simulations to
4222 select output from some arguments.
4224 * Use --env to transfer environment variables through ssh to remote
4227 * GNU Parallel is accepted for Ubuntu Quantal.
4228 http://packages.ubuntu.com/quantal/parallel
4230 * GNU Parallel was requested for OpenSUSE (go vote!)
4231 https://features.opensuse.org/314461
4233 * Kneth's Korner: Map/Reduce and GNU Parallel
4234 http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html
4236 * Blog post in Japanese by Siguniang.
4237 https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
4238 (Siguniang mentions the logo is called 'The Cafe Wall Illusion')
4239 http://www.michaelbach.de/ot/ang_cafewall/index.html
4241 * GNU Parallel, where have you been all my life?
4242 http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
4244 * Reference-free ddRADseq analysis tools uses GNU Parallel.
4245 https://github.com/brantp/rtd#readme
4247 * When bash just isn’t quick enough.
4248 https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
4250 * Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
4251 http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
4253 * GNU Parallel Notes.
4254 http://xed.ch/help/parallel.html
4256 * Bug fixes and man page updates.
4261 * Due to a bugfix the main flow has changed. Making this release beta
4264 * Parallel Proxy Scraper & Checker Tool
4265 https://www.youtube.com/watch?v=iXCeR_XsP6o
4267 * Bug fixes and man page updates.
4272 * GNU Parallel was presented at Chiang Mai Bar Camp
4273 http://barcampchiangmai.org/
4275 http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/
4277 * I don't always max out all my CPUs, but when I do, I do it with GNU
4279 http://memegenerator.net/instance/22638454
4281 * Bug fixes and man page updates.
4286 * '-L n --pipe' will use records of n lines. This is useful when
4287 processing data that have fixed records with a fixed number of
4290 * --filter-hosts will remove down hosts. For each remote host: check
4291 that login through ssh works. If not: do not use this host.
4292 Currently you can not put --filter-hosts in a profile, $PARALLEL,
4293 /etc/parallel/config or similar. This is because GNU Parallel uses
4294 GNU Parallel to compute this, so you will get an infinite loop. This
4295 will likely be fixed in a later release.
4297 * --pipe now uses fork() instead of busy wait. The performance should
4298 be better on computers with >10 cores while remaining the same on
4299 computers with few cores.
4301 * GNU Parallel will be represented at Chiang Mai Bar Camp.
4302 http://barcampchiangmai.org/
4304 * Indexing Big Data on Amazon AWS: The Screencast
4305 (Check out his T-shirt at 18:40-21:00).
4306 http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/
4308 * biotoolbox uses GNU Parallel.
4309 https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper
4311 * Spiceweasel uses GNU Parallel.
4312 https://github.com/mattray/spiceweasel
4314 * GNU Parallel part of The Administrators Challenge.
4315 http://challenge.twistedrack.com/questions/qs3.php
4317 * Finding Oldest Firefox Code using GNU Parallel.
4318 http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/
4320 * Bug fixes (quite a few for remote job running) and man page updates.
4325 * Timings in --joblog now with milliseconds.
4327 * Thesis using GNU Parallel (correctly cited; hooray!).
4328 http://scholarworks.sjsu.edu/etd_projects/222/
4331 http://www.perzl.org/aix/index.php?n=Main.Parallel
4333 * Prokka uses GNU Parallel.
4334 http://bioinformatics.net.au/prokka-manual.html
4336 * GNU Parallel was presented at MUUG.
4337 http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/
4339 * Blog post: Manipulating many or large files with GNU parallel.
4340 http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html
4342 * Blog post: Running commands in parallel using bash.
4343 http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html
4345 * Blog post in Hungarian.
4346 http://commandline.blog.hu/2012/05/03/gnu_parallel
4348 * Popularity of GNU Parallel in Debian explodes.
4349 http://qa.debian.org/popcon-graph.php?packages=parallel
4351 * Bug fixes and man page updates.
4356 * A race condition bug caused restructuring of a central piece of the
4357 code. Thus this release of GNU Parallel should be considered beta
4360 * sql --dbsize will now list sizes of all databases if given no
4363 * GNU Parallel is now in Debian Unstable.
4364 apt-get install parallel
4366 * Article: Computational and experimental analyses of
4367 retrotransposon-associated minisatellite DNAs in the soybean genome.
4368 http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf
4370 * Blog post: GNU parallel - the best thing since sliced bread.
4371 https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/
4373 * Blog post: GNU Parallel makes everything faster.
4374 http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html
4376 * Blog post (German): Howto: GNU parallel.
4377 http://d24m.de/2012/04/05/howto-gnu-parallel/
4379 * Blog post: Running in Parallel
4380 http://interactivity.ifactory.com/2012/04/running-in-parallel/
4382 * 20000 watched the first intro video.
4385 * The first 5 have received their GNU Parallel merchandise
4386 https://www.gnu.org/software/parallel/merchandise.html
4388 * Bug fixes and man page updates.
4393 * Parallel Process Database Dumps.
4394 http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html
4396 * Using GNU Parallel to process images from Mars.
4397 http://lunokhod.org/?p=468
4399 * Using GNU Parallel with bzgrep.
4400 http://filip.rembialkowski.net/did-you-know-gnu-parallel/
4402 * Bug fixes and man page updates.
4407 * --workdir . will use the current working dir. If the current working
4408 dir is beneath your home dir, the value . is treated as the relative
4409 path to your home dir. This means that if your home dir is different
4410 on remote computers (e.g. if your login is different) the relative
4411 path will still be relative to your home dir.
4413 * A texinfo file is now generated from the POD file using pod2texi.
4415 * The bioinformatics article "Fast large-scale clustering of protein
4416 structures using Gauss integrals" mentions GNU Parallel. They forgot
4417 to add the reference. Please remember --bibtex if you use GNU
4418 Parallel in an article.
4419 http://bioinformatics.oxfordjournals.org/content/28/4/510.short
4421 * The first supporter received his merchandise. Did you order yours?
4422 https://www.gnu.org/software/parallel/merchandise.html
4424 * How to use GNU Parallel with samtools.
4425 http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html
4427 * How to use GNU Parallel for vacuuming PostgreSQL tables.
4428 http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/
4430 * Converting e-books with Calibre and GNU Parallel.
4431 http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/
4433 * Using GNU Parallel for tailing logfiles from multiple servers.
4434 http://silviud.blogspot.com/2012/02/shell-parallel-processing.html
4436 * Bug fixes and man page updates.
4441 * --header : uses the first input line as column names and you can
4442 then use {colname} as a replacement string in the command. This also
4443 works with multiple :::'s.
4445 * --header <regexp> matches a header as a regular expression and
4446 repeats the header for each block with --pipe.
4448 * --resume resumes from the last unfinished job. Useful if you stop
4449 GNU Parallel and restart it later with the same arguments.
4451 * niceload now propagates exit status correctly.
4453 * Show your support for GNU Parallel. For a limited time you can get a
4454 GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
4455 https://www.gnu.org/software/parallel/merchandise.html
4457 * Options -g -B -T -U -W -Y are retired as warned 6 months ago.
4459 * GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
4460 to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128
4462 * Article in IEEE Software on GNU Parallel. Thanks to Diomidis
4463 Spinellis. http://www.spinellis.gr/blog/20110911/
4465 * An article on Narwhal which uses GNU Parallel. They forgot to add
4466 the reference. Please remember --bibtex if you use GNU Parallel in
4468 http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf
4470 * Blog post on using GNU Parallel to speed up BLAST queries:
4471 http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html
4473 * Video showing Wake-on-LAN with GNU Parallel.
4474 https://www.youtube.com/watch?v=0mB-yIyKFLQ
4476 * Using GNU Parallel with Solr.
4477 http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html
4479 * First job ad including GNU Parallel:
4480 http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex
4482 * Bug fixes and man page updates.
4487 * --timeout will now kill grandchildren.
4489 * Interview in Hacker Public Radio.
4490 http://hackerpublicradio.org/eps.php?id=0860
4492 * Blog post in Chinese.
4493 http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html
4495 * Bug fixes and man page updates.
4500 * GNU Parallel package for Fedora.
4501 https://admin.fedoraproject.org/pkgdb/acls/name/parallel
4503 * Using GNU Parallel with Mozilla cross referencing.
4504 https://blog.mozilla.com/it/2011/11/15/mxr-improvements/
4506 * Neat flash presentation of GNU Parallel.
4507 http://prezi.com/0nq74b2elgtx/about-gnu-parallel/
4509 * How to create tar files of dirs in parallel.
4510 https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/
4512 * Article in Admin Network&Security by Ben Martin.
4513 http://www.admin-magazine.com/HPC/Articles/GNU-Parallel
4515 * Blog post in Polish.
4516 http://blog.tiger.com.pl/2011/01/05/gnu-parallel/
4518 * Blog post on using GNU Parallel of Mac OS X.
4519 http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/
4521 * Blog post in English by researcher.
4522 http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/
4524 * Blog entry in Chinese.
4525 http://blog.csdn.net/tossense/article/details/6889026
4527 * Blog entry in Japanese on managing many servers.
4528 http://hiroakis.com/blog/2011/11/13/gnu-parallel/
4530 * GNU Parallel is now part of ppbs.
4531 http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html
4533 * How to use GNU Parallel with MCX.
4534 http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster
4536 * Bug fixes and man page updates.
4541 * --tag prepends lines with the argument(s). If used with --(n)onall
4542 the line will be prepended with the sshlogin instead.
4544 * --shellquote does not run the command but quotes it using \'s.
4545 Useful for making quoted composed commands.
4547 * --profile can now be repeated merging multiple profiles.
4549 * --bibtex now gives the BibTeX entry.
4550 Thanks to Aleksandr Levchuk for testing.
4552 * Makefile for simple .deb package.
4553 cd packager/debian; make
4555 * sql: --list-databases lists the databases.
4557 * GNU Parallel officially in Fedora 16
4558 http://www.spinics.net/lists/fedora-package-announce/msg67130.html
4560 * Blog post on recompression FLAC audio.
4561 http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html
4563 * The most complex use of ::: I have seen so far.
4564 http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html
4566 * Example of using GNU Parallel with sudo.
4567 http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files
4569 * Use wget and gnu parallel to download mp3s at rocket speed.
4570 http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at
4572 * First CV referring to GNU Parallel.
4573 http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602
4575 * Cartwright labs usage of GNU Parallel.
4576 http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck
4578 * Bug fixes and man page updates.
4583 * --timeout implemented so that slow commands can be killed
4585 * CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.
4587 * Example of a parallel webcrawler in the man page.
4589 * Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
4590 http://wirtel.be/2011/07/15/rsync_parallel/
4592 * Blog post in Japanese.
4593 http://dminor11th.blogspot.com/2011/08/gnu-parallel.html
4595 * Blog post about optimizing JPEGs. Thanks to Thomas Jost.
4596 http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/
4598 * Bug fixes and man page updates.
4603 * niceload: --hard will suspend a program if a limit is reached - as
4604 opposed to just slowing the program down.
4606 * niceload: --soft will slow the program down - as opposed to
4607 suspending the program completely.
4609 * niceload: --run-io will slow down a program if disk io goes above a
4612 * niceload: --run-load will slow down a program if loadaverage goes
4613 above a certain limit.
4615 * niceload: --run-mem will slow down a program if free memory goes
4616 below a certain limit.
4618 * niceload: --run-noswap will slow down a program if the computer is
4621 * niceload: --start-io, --start-load, --start-mem, --start-noswap will
4622 defer starting a program until the system is below the limit.
4624 * --io, --load, --mem, and --noswap sets both --run-* and --start-*.
4626 * niceload got a major rewrite and is now object oriented.
4628 * GNU Parallel was presented at Nordic Perl Workshop 2011.
4629 http://conferences.yapceurope.org/npw2011/talk/3416
4631 * Blog post about zcat and GNU Parallel. Thanks to Dr. John.
4632 http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/
4634 * 2 blog posts in Japanese. Thanks to Negima.
4635 http://d.hatena.ne.jp/negima1976/20110607/1307412660
4636 http://d.hatena.ne.jp/negima1976/20110628/1309252494
4638 * Blog post for bioinformatics. Thanks to Chris Miller.
4639 http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/
4641 * Bug fixes and man page updates.
4646 * --onall will run all the jobs on all the computers. This is useful
4647 for systemadinistrators having multiple servers.
4649 * --nonall runs like --onall but reads no arguments from stdin
4650 (standard input), so is possible to do:
4651 parallel --nonall -S computer1,computer2 uptime
4653 * Context replace now works with multiple input sources:
4654 parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c
4656 * --noswap do not start a job on a server that is swapping.
4658 * Article: Parallel processing without Hadoop!
4659 http://www.solutionhacker.com/parallel-processing-without-hadoop/
4661 * Article in Linux Magazine (Spanish). Thanks to Ben Martin.
4662 http://www.linux-magazine.es/issue/67/
4664 * First blog post in Korean. Thanks to 민병국.
4665 http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#
4667 * Blog post in Japanese. Thanks to Naoya Nakazawa.
4668 http://www.sssg.org/blogs/naoya/archives/2003
4670 * Blog post in English. Thanks to Dagon.
4671 http://hekate.homeip.net/2011/05/29/
4673 * Bug fixes and man page updates.
4678 * Multiple ::: can be put on the command line and will be treated
4679 similar to contents from multiple -a's.
4681 * ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
4682 refer to inputs from the different input sources.
4684 * --xapply is now needed to get xapply's behaviour of reading one line
4685 from each of the input sources.
4687 * Multiple input sources will cause all combinations of arguments from
4688 the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
4689 a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
4692 * Implemented {//} for the input line with the basename removed (dirname).
4694 * New video showing the new ::: and :::: input sources.
4695 http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc
4697 * GNU Parallel now has a logo.
4698 http://www.gnu.org/software/parallel/logo.png
4700 * Article about GNU SQL in USENIX Magazine ;login: (print)
4701 http://www.usenix.org/publications/login/2011-04/
4703 * Using GNU Parallel with EC2. Thanks to Kevin Wu.
4704 http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in
4706 * Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
4707 http://d.hatena.ne.jp/ichii386/20110426
4709 * Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
4710 http://www.hollenback.net/index.php/MacportsParallel
4712 * Robert from Echo One discusses using processes instead of threads:
4713 http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/
4715 * How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
4716 http://www.kevinstock.org/2011/04/using-the-ri-cluster/
4718 * Short article about using GNU Parallel with lame:
4719 http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion
4721 * Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
4722 http://blog.clouder.jp/archives/001140.html
4724 * BBC Research & Development uses GNU Parallel:
4725 http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml
4727 * Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
4728 http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/
4730 * Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
4731 http://derek.chezmarcotte.ca/?p=286
4733 * Bug fixes and man page updates.
4738 * {#} now works as an alias for $PARALLEL_PID.
4740 * --eta now estimates way more accurately.
4742 * CPU detection code for AIX thanks to Christian Netrwal.
4744 * --joblog contains exitcode.
4746 * Thanks to Ævar Arnfjörð Bjarmason for reading my code.
4748 * GNU Parallel was presented at:
4749 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4750 - OSAA.dk, Aarhus, 2011-04-12
4752 * Blog entry in Japanese. Thanks to Riywo.
4753 http://blog.riywo.com/2011/04/19/022802
4755 * Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
4756 J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel
4758 * First example of using GNU Parallel in Hebrew. Thanks to omry.
4761 * Intro video got past 10000 hits.
4762 http://www.youtube.com/watch?v=OpaiGYxkSuQ
4764 * Bug fixes and man page updates.
4769 * --tollef to be switch compatible with Tollef's parallel. This will
4770 cause -l to mean --load, and the argument separator will be --
4773 * --gnu will force GNU Parallel to behave like GNU Parallel even if
4776 * Site wide config file: /etc/parallel/config
4778 This should solve the issue with some packagers renaming GNU
4779 Parallel to gparallel to avoid the naming conflict.
4781 By putting --tollef in the site wide config file you can deinstall
4782 Tollef's parallel and install GNU Parallel instead without any
4783 change for users or scripts. This is useful for packagers that
4784 currently rename GNU Parallel or simply do not distribute GNU
4785 Parallel because the command name conflicts with Tollef's parallel.
4787 * -L 0 -n 0, and -N 0 implemented. They will read one argument,
4788 but insert 0 arguments on the command line. Useful if you just want
4789 to run the same command with the same arguments a number of times.
4791 * GNU Parallel is now in Fink. Thanks to Jesse Alama.
4792 http://pdb.finkproject.org/pdb/package.php/parallel
4794 * Opscode Cookbook for Chef. Thanks to Joshua Timberman.
4795 https://github.com/opscode/cookbooks/tree/master/gnu_parallel
4797 * Man page examples translated into Japanese. Thanks to Koshigoe.
4798 http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13
4800 * GNU Parallel will be presented at:
4801 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4802 - OSAA.dk, Aarhus, 2011-04-12
4804 * Video of presentation from FSCONS 2010-11-07. The presenter was
4805 _really_ hoarse that day (Something to do with loads of alcohol the
4806 night before). http://vimeo.com/20838834
4808 * Review with examples in German. Thanks to M. Nieberg.
4809 http://kenntwas.de/2011/linux/gnu-parallel/
4811 * A review of the --pipe option in German. Thanks to Mathias Huber.
4812 http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten
4814 * A small example of grepping maillogs. Thanks to François Maillet.
4815 http://www.francoismaillet.com/blog/?p=399
4817 * Using GNU Parallel instead of xargs. Thanks to James Cuff.
4818 http://blog.jcuff.net/2011/02/on-train-ride-in.html
4820 * Bug fixes and man page updates.
4825 * --pipe splits piped data into blocks. Each block is piped to a
4826 program for processing. The piping and the programs will be run in
4827 parallel. Useful if the data you want to process is data for a
4828 program and not arguments.
4830 * --blocksize sets the blocksize in bytes for --pipe. The blocksize is
4831 approximate. It can deviate as much as the size of one record.
4834 * --recstart sets the string matching the start of a
4835 record. Default is "".
4837 * --recend sets the string matching the end of a
4838 record. Default is '\n'. To specify none use --recend "".
4840 If both --recstart and --recend are set, the end of a record must be
4841 followed immediately by a start of a record. This is useful if
4842 either recend or recstart can occur in the middle of a record.
4844 * --remove-rec-sep removes the string matched by --recstart and
4847 * --regexp will make GNU Parallel treat --recstart and --recend as
4848 regular expressions.
4850 * --output-as-files will put the output of the programs into files and
4851 instead of giving the output GNU Parallel will output the name of
4854 * -N if used with --pipe sets the number of records to read.
4856 * New video showing --pipe at
4857 http://www.youtube.com/watch?v=1ntxT-47VPA
4859 * GNU Parallel was presented at FOSDEM.
4861 * Article in USENIX Magazine ;login: (print)
4862 http://www.usenix.org/publications/login/2011-02/
4864 * GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
4865 https://www.ohloh.net/p/gnu-parallel
4867 * Advanced recursive example. Thanks to Ruarí Ødegaard.
4868 http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu
4870 * Small example on using GNU Parallel through 0install (German).
4871 http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/
4873 * Bug fixes and man page updates.
4878 * --joblog makes a simple log of completed jobs.
4880 * -X now spreads arguments between job slots when reaching last
4881 argument. Use -j1 to avoid this.
4883 * People on the email list have voted -j+0 to be the new default
4886 * First review in Polish. Thanks to Patryk Krawaczyński.
4887 http://nfsec.pl/root/2458
4889 * Review in Spanish (in print).
4890 https://www.linux-magazine.es/issue/67/moreinfo.html
4892 * Review in English. Thanks to Brian Gough.
4893 http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/
4895 * Review in French. Thanks to Denis Dordoigne.
4896 http://linuxfr.org/2010/12/29/27715.html
4898 * Review in Spanish.
4899 http://gufete.net/index.php?entry=entry110116-200022
4901 * Article with advanced recursive example. Thanks to Ruarí Ødegaard
4902 http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel
4904 * Use case for memcache.
4905 http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/
4907 * Bug fixes and man page updates.
4912 * GNU niceload is now part of GNU Parallel. GNU niceload slows down a
4913 program if the load average is above a certain limit.
4915 * Implemented --tmpdir to buffer standard output and standard error in
4918 * Implemented --load to wait until the load is below a limit before
4919 starting another job on that computer.
4921 * Implemented --nice set the niceness of jobs running both locally and
4924 * Implemented --dry-run to print the job without running it.
4926 * Implemented --tty as the old default of assigning a tty to the first
4927 job causes problems.
4929 * Review with focus on clusters. Thanks to Taylor Gillespie
4930 http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html
4932 * Review with focus on protein similarity.
4933 http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel
4935 * Review in Spanish.
4936 http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux
4938 * Quite a few bug fixes and man page updates.
4943 * Implemented {/} for the input line with the path removed (basename).
4945 * Implemented {/.} for the input line with extension and path removed
4948 * Output from --progress is now sent to standard error instead of
4951 * --eta was broken and counted down from 0. Now fixed.
4953 * Standard output and standard error are flushed after every job so if
4954 standard output does not end with a newline it will still be grouped
4955 with the rest of standard output.
4957 * --command, -c, --file, and -f are now removed as options. They were
4958 never used in practice.
4960 * GetOptionsFromArray rewritten to work with old Perl libraries.
4962 * The file COPYING now contains the GNU General Public License 3
4964 * Major rewrite to make the code more object oriented and easier to
4965 maintain in the future.
4970 * Using -j myfile the number of jobs can be changed while GNU Parallel
4971 is running simply by changing the content of myfile.
4973 * Implemented --profile to use different .parallel/config for
4974 different situations.
4976 * Ugly newlines in $PARALLEL and .parallel/config are no longer
4977 needed. Instead you have to use \ in front of special shell
4980 * --workdir puts the files transferred to remote machines in a
4981 specified directory.
4983 * $PARALLEL_PID is set to the process id of GNU Parallel.
4985 * $PARALLEL_SEQ is set to the sequence number of the job.
4987 * -v now only shows the command to run. Use -v -v to show the
4990 * Slow spawning error is now only a warning.
4992 * If stdin is a tty and input is read from stdin you now get a
4995 * GNU sql: \n and \x0a in arguments is replaced with newline.
4997 * Patch for Debian package and spelling mistakes. Thanks to Rogério
4998 Brito <rbrito at ime dot usp dot br>
5000 * Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
5001 palardy at gmail dot com>
5003 * FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>
5005 * Pardus package. Thanks to Fethican Coşkuner
5006 <fethicanc at gmail dot com>
5008 * First review in Chinese. Thanks to 曾義峰:
5009 http://antbsd.twbbs.org/~ant/wordpress/?p=2876
5011 * First review in print:
5012 http://www.linux-magazine.com/Issues/2010 Nov 2010
5014 * First review in Spanish:
5015 http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando
5017 * First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
5019 http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html
5021 * Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
5022 http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life
5024 * 5000 views of the intro video:
5025 http://www.youtube.com/watch?v=OpaiGYxkSuQ
5027 * As usual a bunch of bugfixes and more usage examples in the man
5030 * GNU Parallel was presented at FSCONS 2010-11-07:
5031 http://www.fscons.org/fs/gnu-parallel Hopefully the
5032 video will be online soon.
5037 * See GNU Parallel live at FSCONS 2010-11-07:
5038 http://www.fscons.org/fs/gnu-parallel
5040 * Untested Debian and xUbuntu packages available through OpenSUSE
5042 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
5044 * Using --retries a job will be retried on another computer if it
5045 fails. This is useful if some jobs fail for no apparent reason (such
5046 as network failure).
5048 * BSD xargs -o (open /dev/tty) is now default for the job running in
5049 foreground. Useful for interactive commands like:
5050 ls | parallel -Xuj1 vi
5052 * GNU sql now supports SQLite.
5054 * Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.
5056 * GNU sql now support --list-tables
5058 * Alias for DBURL can contain '?query' part with %-quoting.
5063 * Using --shebang GNU Parallel can be used as the parser for a script.
5064 E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
5067 * First community generated bugfixes
5069 * Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
5070 at altlinux dot org>
5072 * Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
5073 <sunfreeware at gmail.com>
5075 * Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
5076 available through OpenSUSE build service:
5077 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
5079 * Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
5080 http://www.andrew-mcfague.com/linux/utilities-linux/
5081 commands-every-serious-nix-user-should-know/#parallel
5083 * First 1000 views of the intro video
5085 * sql - a small script to access sql bases from the command line which
5086 is a handy companion to parallel --colsep
5091 * Counting semaphore functionality: start a job in the background. If
5092 N jobs are already running, wait for one to complete. Examples:
5093 sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
5094 sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait
5096 * With --colsep a table can be used as input. Example:
5097 cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}
5099 * --trim can remove white space around arguments.
5101 * --sshloginfile '..' means use ~/.parallel/sshloginfile
5103 * Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
5106 * OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
5109 * NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>
5111 * Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
5112 Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>
5114 * Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
5115 Thanks to Phil Sung <psung at alum dot mit dot edu>
5120 * Arguments can now be given on the command line. Example:
5121 parallel bzip2 ::: *.txt
5123 * xapply like functionality. Example:
5124 parallel diff {1} {2} :::: filelist1 filelist2
5125 parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2
5127 * Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>
5129 * Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
5132 * -L -l -n -s now implies -X unless -m is set
5137 * New video showing the new options.
5138 http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
5139 http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/
5141 * 100% options complete with xargs. All options for xargs can now be
5142 used in GNU Parallel - even the more exotic.
5144 * --basefile for transferring basedata. When running jobs on remote
5145 computers --basefile will transfer files before the first jobs is
5146 run. It can be used to transfer data that remains the same for each
5147 job such as scripts or lookup tables.
5149 * --progress shows progress. To see how many jobs is running on each
5150 server use --progress. It can be turned on even after GNU Parallel
5153 * --eta shows estimated time left in seconds.
5155 * --halt-on-error stops if an error occurs. GNU Parallel will default
5156 to run all jobs - even if some of them fail. With --halt-on-error
5157 GNU Parallel can ignore errors, wait for the currently running jobs
5158 to finish, or stop immediately when an error occurs.
5163 * GNU Parallel now has support for running jobs on remote machines
5165 * Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
5166 http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech
5171 * GNU Parallel is now official GNU software