Released as 20240122 ('Frederik X')

[parallel.git] / NEWS

20240122

New in this release:

* --sshlogin supports ranges: server[01-12,15] 10.0.[1-10].[2-254]

* --plus enables {slot-1} and {seq-1} = {%}-1 and {#}-1 to count from 0.

* env_parallel.{sh,ash,dash,bash,ksh,zsh} is now the same script.

* Bug fixes and man page updates.


20231222

New in this release:

* --combine-exec combines GNU Parallel with any executable.

* Bug fixes and man page updates.

News about GNU Parallel:

* The first GNU Parallel video that seems to be completely AI
  generated: https://www.youtube.com/watch?v=Ie8eAhlEHOg

* GNU Parallel and “fail immediately if any fails” problem
  https://antiarchitect.medium.com/gnu-parallel-and-fail-immediately-if-any-fails-problem-481ddea690ba


20231122

New in this release:

* -a file1 -a +file2 will link file2 to file1 similar to ::::+

* --bar shows total time when all jobs are done.

* Bug fixes and man page updates.

News about GNU Parallel:

* Using GNU Parallel in bash scripts to optimize python processes
  https://climate-cms.org/posts/2023-11-02-gnu-parallel.html


20231022

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* Resume long parallel jobs
  https://ginolhac.github.io/posts/2023-10-02_resume-parallel/index.html

* Efficiency and Speed with GNU Parallel
  https://dev.to/0xog_pg/efficiency-and-speed-with-gnu-parallel-loo


20230922

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* This CLI Tool is AMAZING | Prime Reacts
  https://www.youtube.com/watch?v=ry49BZA-tgg

* New Data Engineering Stack - GNU parallel
  https://www.linkedin.com/feed/update/urn:li:activity:7100509073149743104?updateEntityUrn=urn%3Ali%3Afs_feedUpdate%3A%28V2%2Curn%3Ali%3Aactivity%3A7100509073149743104%29


20230822

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* GNU Parallel, where have you been all my life?
  https://alexplescan.com/posts/2023/08/20/gnu-parallel/

* Parallel (multithreaded) music download from Youtube
  https://hrna.moe/?p=parallel-multithread-music-download


20230722

New in this release:

* Time functions (e.g. yyyymmdd($secs) ) can now take secs since epoch as argument.

* Bug fixes and man page updates.


20230622

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* Run faster in the terminal with Gnu Parallel https://www.youtube.com/watch?v=fSYVYsKXWP0

* Building an (Evil) Android Phone Bot Army http://blog.faucher.net/2023/05/building-evil-android-phone-bot-army.html


20230522

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* Introduction to parallel computing https://youtu.be/fvrHXV8yqU4?t=2874

* Script for summarizing GNU parallel joblog file https://github.com/gavinmdouglas/parallel_joblog_summary

* How to copy a single file to multiple directories in Linux or Unix https://www.cyberciti.biz/faq/linux-unix-copy-a-file-to-multiple-directories-using-cp-command/

* Search in your Jupyter notebooks from the CLI, fast. https://dev.to/attilavm/search-in-your-jupyter-notebooks-from-the-cli-fast-1408

* Parallel Job Orchestration with GNU Parallel https://www.youtube.com/watch?v=2tVpUfND3LI

* Optional Individual Submission 4 Job Handling 20266001 - GNU Parallel https://www.youtube.com/watch?v=eC_RPuFCcU8

* DOE Cross-facility Workflows Training - April 12, 2023 https://www.youtube.com/watch?v=Ke3sirM-aQQ

* How to run MiXCR 4.x on multiple patient samples using GNU Parallel https://www.youtube.com/watch?v=OXg-WHlB_dk


20230422

New in this release:

* --jobs evaluates expression: +3*log(55)% = ncpu*1.12

* Bug fixes and man page updates.

News about GNU Parallel:

* Running shell script in parallel
  https://w3toppers.com/running-shell-script-in-parallel/

* Simulating climate risk scenarios for the Amazon Rainforest
  https://aws.amazon.com/blogs/hpc/simulating-climate-risk-scenarios-for-the-amazon-rainforest/

* How To Use Your Entire CPU In Bash With Parallel
  https://bash-prompt.net/guides/parallell-bash/

* Bash - parallel command execution
  https://medium.com/linuxstories/bash-parallel-command-execution-d4bd7c7cc1d6

* 3 tips for faster batch post-pro
  https://www.cfdengine.com/newsletter/142/


20230322

New in this release:

* Better support for wide characters in --latest-line.

* Support for rsync 3.2.7.

* Bug fixes and man page updates.


20230222

New in this release:

* parsort: --parallel now does closer to what you expect.

* parallel: --files0 is --files but \0 separated.

* Bug fixes and man page updates.

News about GNU Parallel:

* 5 great Perl scripts to keep in your sysadmin toolbox
  https://www.redhat.com/sysadmin/perl-scripts


20230122

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* The Best Ethical Hacking Tools of 2023 (and their basic usage)
  https://www.purevpn.com/blog/the-best-hacking-tools-of-2023/#11_GNU_Parallel

* GNU Parallel: criando atividades em paralelo com shell script
  https://www.vivaolinux.com.br/artigo/GNU-Parallel-criando-atividades-em-paralelo-com-shell-script/


20221222

New in this release:

* --results works on more file systems (e.g. fat)

* Joblog gives the same exit code as bash.

News about GNU Parallel:

* Programação Shell Linux: Paralelismo de processos com GNU parallel
  https://www.youtube.com/watch?v=duheTWLIrp8

* Talk Python: Data Science from the Command Line
  https://talkpython.fm/episodes/show/392/data-science-from-the-command-line


20221122

New in this release:

* Support for IPv6 adresses and _ in hostnames in --sshlogin.

* Use --total-jobs for --eta/--bar if generating jobs is slow.

* A lot of bugs fixed in --latest-line.

* Better support for MSYS2.

* Better Text::CSV error messages.

* --bar supports UTF8.

* Bug fixes and man page updates.

News about GNU Parallel:

* GNU Parallel is now on Mastodon: @GNU_Parallel@hostux.social


20221022

New in this release:

* --latest-line chops line length at terminal width.

* Determine max command length faster on Microsoft Windows.

News about GNU Parallel:

* Distributed Task Processing with GNU Parallel
  https://www.youtube.com/watch?v=usbMLggdMgc

* GNU Parallel workflow for many small, independent runs
  https://docs.csc.fi/support/tutorials/many/

* Copy a File To Multiple Directories With A Single Command on Linux
  https://www.linuxfordevices.com/tutorials/linux/copy-file-to-multiple-directories-with-one-command

* Behind The Scenes: The Power Of Simple Command Line Tools At Cloud
  Scale
  https://blog.gdeltproject.org/behind-the-scenes-the-power-of-simple-command-line-tools-at-cloud-scale/

* Run lz4 compression in parallel using GNU parallel
  https://www.openguru.com/2022/09/

* Xargs / Parallel With Code Examples
  https://www.folkstalk.com/2022/09/xargs-parallel-with-code-examples.html

* Parallel processing on a single node with GNU Parallel
  https://www3.cs.stonybrook.edu/~cse416/Section01/Slides/SeaWulfIntro_CSE416_09222022.pdf

* Using GNU parallel painlessly -- from basics to bioinformatics job
  orchestration https://www.youtube.com/watch?v=qypUdm-IE9c


20220922

New in this release:

* --colour-failed only changes output for failing jobs.

* Password for --sshlogin can be put in $SSHPASS.

* Examples are moved from `man parallel` to `man parallel_examples`.

* Bug fixes and man page updates.

News about GNU Parallel:

* WOMM - Works On My Machine uses GNU Parallel https://pypi.org/project/womm/


20220822

New in this release:

* --header 0 allows using {filename} as replacement string

* Bug fixes and man page updates.


20220722

New in this release:

* --colour-failed will color output red if the job fails.

* sql: support for InfluxDB.

* Polarhome.com is dead, so these OSs are no longer supported: AIX
  HPUX IRIX Minix OPENSTEP OpenIndiana OpenServer QNX Solaris Syllable
  Tru64 Ultrix UnixWare.

* Bug fixes and man page updates.


20220622

New in this release:

* , can be used in --sshlogin if quoted as \, or ,,

* --plus {/#regexp/str} replace ^regexp with str.

* --plus {/%regexp/str} replace regexp$ with str.

* --plus {//regexp/str} replace every regexp with str.

* 'make install' installs bash+zsh completion files.

* Bug fixes and man page updates.


20220522

New in this release:

* --latest-line shows only the latest line of running jobs.

* --color colors output in different colors per job (this obsoletes --ctag).

* xargs compatibility: --process-slot-var foo sets $foo to jobslot-1.

* xargs compatibility: --open-tty opens the terminal on stdin (standard input).

* Bug fixes and man page updates.

News about GNU Parallel:

* Building a fault-tolerant work queue for command-line executions
  with GNU Parallel https://www.jvt.me/posts/2022/04/28/shell-queue/

* Make your code do more, with less
  https://www.blopig.com/blog/2022/05/make-your-code-do-more-with-less/

* W09 B IntroHPC II 20220513 gnu parallel
  https://www.youtube.com/watch?v=2udvC90rIa4


20220422

New in this release:

* sash is no longer supported as shell.

* --retries 0 is an alias for --retries 2147483647.

* --shell-completion returns shell completion code.

* --ssh-login-file reloads every second.

* --parset is replaced with --_parset because it is only used internally.

* sem --pipe passes STDIN (standard input) to the command.

* Bug fixes and man page updates.


20220322

New in this release:

* --sshlogin user:password@host is now supported by using sshpass.

* Bug fixes and man page updates.

News about GNU Parallel:

* Bash: GNU Parallel with Curl
  https://gist.github.com/CMCDragonkai/5914e02df62137e47f32?permalink_comment_id=2617456

* The Pipe Operator Explained
  https://medium.com/geekculture/the-pipe-operator-explained-cbd41e23775a


20220222

New in this release:

* Encoding of remote commands has changed. This limits the length of
  remote commands to less than half. It also requires $REMOTE_TMPDIR
  to be writable. It makes this release beta quality.

* Time functions hh_mm_ss() hhmmss() hh_mm() hhmm() are now available
  for {= =}.

* Many options in the man page for parallel now has 'see also' for
  related options.

* parallel_options_map.pdf is a map showing which options other
  options relate to.

* {uniq} added to --plus to only run jobs with unique values.

* sem --fg exits with the exit code of the job.

* Bug fixes and man page updates.


20220122

New in this release:

* GNU Parallel turned 20 on the 2022-01-06
  https://www.gnu.org/software/parallel/20th-birthday.html

* Bug fixes and man page updates.

News about GNU Parallel:

* Save Time with Modern Search Techniques
  https://www.eventbrite.com/e/ohio-information-security-forum-january-2022-monthly-meeting-tickets-240632737997

* Bash "Fail immediately if any fails"
  https://morioh.com/p/a01b883dc57c

* Re-encoding the EmacsConf videos with FFmpeg and GNU Parallel
  https://sachachua.com/blog/2021/12/re-encoding-the-emacsconf-videos-with-ffmpeg-and-gnu-parallel/

* Bash 平行 https://learntutorials.net/ja/bash/topic/10778/%E5%B9%B3%E8%A1%8C


20211222

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* The first version of Parallel will be 20 years on 2022-01-06

* HerrComp Intro HPC gnu parallel
  https://www.youtube.com/watch?v=tcgjKWfgWQY

* 多数のファイルを処理する場合の工夫
  https://qiita.com/toramili/items/44a770cfb9ef1edc9e26

* How To Install parallel on Ubuntu 20.04
  https://installati.one/ubuntu/20.04/parallel/

* Distributing embarrassingly parallel tasks GNU Parallel
  https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/


20211122

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* Otimizando o seu Hacking com o GNU Parallel - Mateus Buogo
  https://www.youtube.com/watch?v=xIpPPZXDKGU

* SMACK 12 - Do it faster! Simple ways to use all those cores (and
  GPUs) efficiently. https://www.youtube.com/watch?v=lXDGY7NvOYk


20211022

New in this release:

* Don't postpone output until $jobslots jobs have been started.

* Bug fixes and man page updates.

News about GNU Parallel:

* How to Install GNU Parallel using Anaconda | Linux
  https://www.youtube.com/watch?v=UwDNVP-L0qA

* Install GNU Parallel from source code | Linux
  https://www.youtube.com/watch?v=PIyJH4ben5o

* Compiling GNU Parallel on CentOS-7
  https://thelinuxcluster.com/2021/10/19/compiling-gnu-parallel-on-centos-7/


20210922

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* 3 Programs that will Level Up your Bash Game
  https://medium.com/codex/3-programs-that-will-level-up-your-bash-game-bf14e17e2291

* I Summarized 100+ Command-Line Tools for Data Scientists in 15
  Minutes
  https://towardsdatascience.com/i-summarized-100-command-line-tools-for-data-scientists-in-15-minutes-976def544ffe

* Speed up Your Builds by Parallelizing
  https://www.incredibuild.com/blog/speed-up-your-builds-by-parallelizing

* Bash: GNU Parallel with Curl
  https://gist.github.com/dinh/93b936a55de9a331199d6582bc2921d2


20210822

New in this release:

* --ctag/--ctagstring colors the tag in different colors for each job.

* You can use unit prefixes (k, m, g, etc) with -n -N -L.

* Bug fixes and man page updates.

News about GNU Parallel:

* Parallelising jobs with GNU parallel
  https://blog.ronin.cloud/gnu-parallel/

* Use multiple CPU Cores with your Linux commands - awk, sed, bzip2,
  grep, wc, etc. https://cdmana.com/2021/07/20210728132344693t.html

* How to execute commands in parallel in Linux
  https://net2.com/how-to-execute-commands-in-parallel-in-linux/


20210722

New in this release:

* --results no longer prints the result to standard output (stdout) as
  voted in
  https://lists.gnu.org/archive/html/parallel/2020-12/msg00003.html

* parset supports associative arrays in bash, ksh, zsh.

* Online HTML is now generated by Sphinx.

* Bug fixes and man page updates.

News about GNU Parallel:

* Cleaning Up Scanned Documents with Open Source Tools
  https://kaerumy.medium.com/cleaning-up-scanned-documents-with-open-source-tools-9d87e15305b


20210622

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* How to use GNU Parallel
  https://techtipbits.com/linux/how-to-use-gnu-parallel/

* How to Speed Up Bash Scripts with Multithreading and GNU Parallel
  https://adamtheautomator.com/how-to-speed-up-bash-scripts-with-multithreading-and-gnu-parallel/

* Use Parallel to split by line
  https://madflex.de/use-parallel-to-split-by-line/

* Optimizing long batch processes or ETL by using buff/cache properly
  II (parallelizing network operations)
  http://www.elsotanillo.net/2021/06/optimizing-long-batch-processes-or-etl-by-using-buff-cache-properly-ii-parallelizing-network-operations/

* Parallelization 3: GNU Parallel https://www.youtube.com/watch?v=Rl06WD60afA


20210522

New in this release:

* --plus includes {%%regexp} and {##regexp}.

* Bug fixes and man page updates.

News about GNU Parallel:

* Batch Calculate and Verify MD5 Checksum With GNU Parallel
  https://omicx.cc/posts/2021-04-28-calculate-and-verify-md5-checksum-with-gnu-parallel/

* HerrComp Gnu parallel, c++11 threads 2021 04 28
  https://www.youtube.com/watch?v=wDd9F9nn0qA

* Distributing embarrassingly parallel tasks GNU Parallel
  https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/

* Job Parallelization on Niagara
  https://www.maryamdaryalal.com/post/job-parallelization-on-niagara

* Use Parallel to split by line
  https://madflex.de/use-parallel-to-split-by-line/

* m1 multi-core batch convert with gpu parallel + ffmpeg
  https://www.youtube.com/watch?v=hAuc0YsXv6A


20210422

New in this release:

* Bug fixes and man page updates.

News about GNU Parallel:

* Bioinformatics tutorials - linux and shell advanced - parallel
  https://www.youtube.com/watch?v=5leL8pyl0XA

* GNU Parallel for quick gains
  https://edbennett.github.io/high-performance-python/04-gnu-parallel/index.html

* Processing Linux Commands in Parallel
  https://www.baeldung.com/linux/processing-commands-in-parallel

* GNU parallel
  https://docs-research-it.berkeley.edu/services/high-performance-computing/user-guide/running-your-jobs/gnu-parallel/

* GNU Parallel 활용 가이드https://genoglobe.com/kribb/gnu_parallel

* Parallel Grep and Awk
  https://www.highonscience.com/blog/2021/03/21/parallel-grep/

* Getting things done with shell scripting
  https://doma.dev/blog/get-things-done-with-bash/


20210322

* Bug fixes and man page updates.

News about GNU Parallel:

* The very first version of Parallel dated 2002-01-06 was found in an
  old backup:

  #!/usr/bin/perl

  $processes=shift;

  chomp(@jobs=<>);
  for (@jobs) {
      $jobnr++;
      push @makefile,
      (".PHONY : job$jobnr\n",
       "job$jobnr :\n",
       "\t$_\n");
  }
  unshift @makefile, "all : ",(map { "job$_ " } 1 .. $jobnr),"\n";
  
  open (MAKE, "| make -k -f - -j $processes") || die;
  print MAKE @makefile;
  close MAKE;

* Introduction to GNU Parallel
  https://www.youtube.com/watch?v=Kj-6JkAqw-8

* Using GNU Parallel with GooseSLURM
  https://readthedocs.org/projects/gooseslurm/downloads/pdf/latest/#chapter.7

* Why GNU-parallel?
  https://github.com/lijingbu/omics/blob/main/why_gnu_parallel.md


20210222

* --filter only run jobs where the filter is true. The filter can
  contain replacement strings and Perl code such as: '{1} < {2}+1'

* --template takes a text file as a template with replacement
  strings. Then it replaces the replacement strings and saves it
  under a new filename.

* --plus implements {0%} {0#} replacement string for zero padded slot
  and sequence.

* Warn that you probably mean -d '\r\n' if the first 3 values end in
  \r\n (DOS newline).

* {= perlexpression =} must return the same value, if run twice on the
  same input.

* Man pages available as .rst-format.

* Bug fixes and man page updates.

News about GNU Parallel:

* A short tutorial on Gnu Parallel
  https://www.polarmicrobes.org/a-short-tutorial-on-gnu-parallel/

* 5 reasons why I love coding on Linux
  https://opensource.com/article/21/2/linux-programming

* Simple Tutorial to install & use GNU Parallel
  https://medium.com/analytics-vidhya/simple-tutorial-to-install-use-gnu-parallel-79251120d618

* LiDO3 - first contact
  https://www.lido.tu-dortmund.de/cms/de/LiDO3/LiDO3_first_contact_handout.pdf

* Rill Stage 2-1: Ways of command-line data analysis
  https://blog.jastix.biz/post/rill-stage-2-1-cli-data-analysis/

* Introduction to GNU Parallel
  https://blog.knoldus.com/introduction-to-gnu-parallel/

* GNU Parallel https://www.hahwul.com/cullinan/parallel/


20210122

* --memsuspend suspends jobs when there is little memory free. This
  way you can run jobs in parallel that added up potentially will take
  up more RAM than is available.

* $PARALLEL_ARGHOSTGROUPS and the replacement string {agrp} will give
  the hostgroup given on the argument when using --hostgroup.

* Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss()
  yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm()
  yyyymmdd() hash($str)

* Bug fixes and man page updates.

News about GNU Parallel:

* Software Engineering For Scientists
  https://canvas.stanford.edu/courses/133091

* Optional Individual Submission 4 Job Handling - GNU Parallel
  https://www.youtube.com/watch?v=-tX0bFAYAxM

* 关于gnu parallel：GnuParallel：在集群上并行化脚本，脚本将文件写入主
  节点https://www.codenong.com/25172209/

* すぐ忘れてしまう、仕事で使う技
  https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c


20201222

* --pipe engine changed making --pipe alpha quality.

* --results -.json outputs results as JSON objects on stdout (standard
  output).

* --delay 123auto will auto-adjust --delay. If jobs fail due to being
  spawned too quickly, --delay will exponentially increase.

* --plus sets {hgrp} that gives the intersection of the hostgroups of
  the job and the sshlogin that the job is run on.

* Bug fixes and man page updates.

News about GNU Parallel:

* Best practices for accelerating data migrations using AWS Snowball
  Edge
  https://aws.amazon.com/blogs/storage/best-practices-for-accelerating-data-migrations-using-aws-snowball-edge/

* Pass the Output of a Command as an Argument for Another
  https://www.baeldung.com/linux/pass-cmd-output-as-an-argument

* Warwick RSE Drop-in - Workflow Management Part 2 - GNU Parallel
  https://www.youtube.com/watch?v=t_v2Otgt87g


20201122

* Bug fixes and man page updates.

News about GNU Parallel:

* https://bash-prompt.net/guides/gnu-parallel-multi-server/


20201022

* --termseq now works for jobs running remotely.

* parsort: Performance optimized for 64-core machines.

* Bug fixes and man page updates.

News about GNU Parallel:

* Juan Sierra Pons has made a testimonial:
  http://www.elsotanillo.net/wp-content/uploads/GnuParallel_JuanSierraPons.mp4

* 「翻译」在生物信息学中使用 GNU-Parallel
  https://cloud.tencent.com/developer/article/1705499


20200922

* New CPU detection for GNU/Linux.

* Bug fixes and man page updates.

News about GNU Parallel:

* Aug 21, 2020 - More Unix tools
  https://floki.blog/2020/08/more_unix_tools


20200822

New in this release:

* Max command line length is changed for MacOS - making this version
  beta quality for MacOS.

* Bug fixes and man page updates.


20200722

New in this release:

* No new functionality

* Bug fixes and man page updates.

News about GNU Parallel:

* Tips for Running Jobs on your VM
  https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel

* Introduction to GNU Parallel: Parallelizing Massive Individual Tasks
  https://www.youtube.com/watch?v=QSFLTEyCKvo

* Slides for same
  http://www.hpc.lsu.edu/training/weekly-materials/2020-Spring/GNUParallel_Spring_2020.pdf

* Linux-Fu: Parallel Universe
  https://hackaday.com/2020/06/29/linux-fu-parallel-universe/

* Resumable batch jobs with gnu parallel https://igor.io/parallel/

* Introducing Parallel into Shell
  https://www.petelawson.com/post/parallel-in-shell/

* AV1 encoding parallelization with GNU Parallel
  https://www.reddit.com/r/AV1/comments/fjvqp9/av1_encoding_parallelization_with_gnu_parallel/

* Beschleunigte Befehlsbearbeitung mit GNU Parallel
  https://www.linux-community.de/ausgaben/linuxuser/2013/06/beschleunigte-befehlsbearbeitung-mit-gnu-parallel/


20200622

New in this release:

* No new functionality

* Bug fixes and man page updates.

News about GNU Parallel:

* GNU Parallel is used at NERSC:
  https://www.nersc.gov/assets/Uploads/08-Workflows-20200616.pdf

* Resumable batch jobs with GNU Parallel https://igor.io/parallel/

* Lab Meeting technical talk
  https://www.slideshare.net/hoffmanlab/gnu-parallel-194030490

* Open Sky Software Website Credits
  https://www.openskysoftware.com/site-credits.htm

* Speed up your Python Scripts using Ubuntu and GNU Parallel
  https://ecce.esri.ca/wpecce/2019/12/24/speed-up-your-python-scripts-using-ubuntu-and-gnu-parallel/

* Indispensable command-line tools
  https://negfeedback.blogspot.com/2020/05/indispensable-command-line-tools.html

* GNU Parallel for simulations
  http://pdebuyl.be/blog/2020/gnu-parallel-for-simulations.html

* Introduction to GNU parallel
  https://bioinformaticsworkbook.org/Appendix/GNUparallel/GNU_parallel_examples.html


20200522

New in this release:

* While running a job $PARALLEL_JOBSLOT is the jobslot of the job. It
  is equal to {%} unless the job is being retried. See {%} for
  details.

* While running a job $PARALLEL_SSHLOGIN is the sshlogin line with
  number of cores removed. E.g. '4//usr/bin/specialssh user@host'
  becomes: '/usr/bin/specialssh user@host'

* While running a job $PARALLEL_SSHHOST is the host part of an
  sshlogin line. E.g. '4//usr/bin/specialssh user@host' becomes:
  'host'

* --plus activates the replacement strings {slot} = $PARALLEL_JOBSLOT,
  {sshlogin} = $PARALLEL_SSHLOGIN, {host} = $PARALLEL_SSHHOST

* Bug fixes and man page updates.

News about GNU Parallel:

* Portable Batch System (PBS) & GNU Parallel - Running a Program
  Multiple Times in Parallel
  https://www.youtube.com/watch?v=6ccbWu6Befo

* GNU Parallel przykład https://www.youtube.com/watch?v=gs_wG4Kt2G4

* Demo of LINUX APP - GNU PARALLEL - running multiple Gstreamer webcam
  .sh scripts with only 1 command
  https://www.youtube.com/watch?v=trQuA_wmWjg


20200422

This release celebrates GNU Parallel's 10 years as a GNU tool:

> commit ed2dfb1043768154d4e7678e01e10287155fa834
> Author: Ole Tange <ole@tange.dk>
> Date:   Thu Apr 22 01:23:00 2010 +0200
>
>    Name change: Parallel is now GNU Parallel.
>    Basic structure for sshlogin and sshloginfile.

New in this release:

* parsort makes GNU sort run faster for files with more than 1M lines.

* Bug fixes and man page updates.

News about GNU Parallel:

* Several clusters have updated their documentation of GNU Parallel:
  https://www.grid5000.fr/w/GNU_Parallel
  https://research-it.berkeley.edu/virtual-training-running-jobs-parallel-savio
  http://www.hpc.lsu.edu/training/archive/tutorials.php

* add_pho uses GNU Parallel: https://github.com/SeedlingsBabylab/add_pho

* GNU parallel使用笔记https://zhuanlan.zhihu.com/p/37340011

* Virtual Workshop: Running Jobs in Parallel on Savio
  https://ais.berkeley.edu/events/virtual-workshop-running-jobs-parallel-savio/2020-04-20

* Free Concurrency with GNU Parallel
  https://phili.pe/posts/free-concurrency-with-gnu-parallel/


20200322

* Bug fixes and man page updates.

News about GNU Parallel:

* The GNU Parallel course in Copenhagen is cancelled
  https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/

* The GNU Parallel course in Århus is cancelled
  https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/

* The 10 year anniversary may be cancelled, see
  https://www.gnu.org/software/parallel/10-years-anniversary.html

* Running shell commands in parallel, via GNU Parallel
  https://dev.to/saveriomiroddi/running-shell-commands-in-parallel-via-gnu-parallel-3a72

* Faster nmap scanning with the help of GNU parallel
  https://badshah.io/experiment/faster-nmap-scanning-with-the-help-of-gnu-parallel/


20200222

* Bug fixes and man page updates.


20200122

* --blocktimeout dur - Time out for reading block when using
  --pipe. If it takes longer than dur to read a full block, use the
  partial block read so far.

* Bug fixes and man page updates.

News about GNU Parallel:

* GNU Parallel course in Copenhagen
  https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/

* GNU Parallel course in Århus
  https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/

* GNU Parallel pour accélérer vos process sous Linux
  https://www.yvonh.com/gnu-parallel-pour-accelerer-vos-process-sous-linux/

* How to copy a file to multiple directories in Linux
  https://net2.com/how-to-copy-a-file-to-multiple-directories-in-linux/

* Running linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8


20191222

* GNU Parallel course in Copenhagen
  https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/

* GNU Parallel course in Århus
  https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/

* GNU Parallel is used in
  https://github.com/JeffersonLab/rfw_tsf_extractor

* Bug fixes and man page updates.


20191122

* GNU Parallel was presented at Driving IT. Slides:
  cloud.prosa.dk/s/drivingit

* Restarting supervisord processes in parallel
  https://blog.naderman.de/2019/11/14/restarting-supervisord-processes-in-parallel/

* Using GNU Parallel to Create Archives Faster
  https://www.reddit.com/r/DataHoarder/comments/dsgmhc/parallel_archiving_techniques/

* Bug fixes and man page updates.


20191022

* --tee will use --output-error=warn-nopipe if supported by tee.

* GNU Parallel will be presented at Driving IT 2019:
  https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools

* UMN Duluth: Job parallelization with task arrays and GNU parallel
  https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel

* Genome updater uses GNU Parallel
  https://github.com/pirovc/genome_updater

* Using GNU-Parallel for bioinformatics
  https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/

* Speeding up PostgreSQL ETL pipeline with the help of GODS
  https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/

* Runing linux commands in parallel
  https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8

* Research Computing University of Colorado Boulder contains an intro
  to GNU Parallel
  https://readthedocs.org/projects/curc/downloads/pdf/latest/

* 如何使用Parallel在Shell中并行执行命令
  https://www.myfreax.com/gnu-parallel/

* 如何测试 Amazon Elastic File System
  https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/

* Bug fixes and man page updates.


20190922

* --nice is now inherited by the nice level that GNU Parallel is
  started at. So 'nice -n10 parallel' will also cause remote jobs to
  be run at nice level 10.

* --delay is now accurate to within 10 ms

* GNU Parallel will be presented at Driving IT 2019:
  https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools

* Greenland Ice Sheet solid ice discharge from 1986 through 2017
  https://www.earth-syst-sci-data.net/11/769/2019/essd-11-769-2019.pdf

* App Center Cloud Build Machines > Installed Software > Utilities
  https://docs.microsoft.com/en-us/appcenter/build/software

* Curryfinger - SNI & Host header spoofing utility
  https://dualuse.io/blog/curryfinger/

* Hyak parallel-sql
  https://wiki.cac.washington.edu/display/hyakusers/Hyak+parallel-sql

* A meditation on analysing data with Perl in parallel using GNU Parallel
  https://www.reddit.com/r/perl/comments/cyo2qc/a_meditation_on_analysing_data_with_perl_in/

* Accélérer ses tâches avec GNU Parallel et les lots de tâches (UL)
  https://www.eventbrite.ca/e/inscription-accelerer-ses-taches-avec-gnu-parallel-et-les-lots-de-taches-ul-71412840729

* RMACC Summit GNU Parallel
  https://curc.readthedocs.io/en/latest/software/GNUParallel.html

* Introducing Parallel into Shell
  https://petelawson.com/post/parallel-in-shell/

* Linux Productivity Tools
  https://www.usenix.org/conference/lisa19/presentation/maheshwari

* Gnu/parallel + Nfs 实现共享文件网络的并发计算等操作
  http://atomicer.cn/2018/01/18/gnu-parallel-nfs-%E5%AE%9E%E7%8E%B0%E5%85%B1%E4%BA%AB%E6%96%87%E4%BB%B6%E7%BD%91%E7%BB%9C%E7%9A%84%E5%B9%B6%E5%8F%91%E8%AE%A1%E7%AE%97%E7%AD%89%E6%93%8D%E4%BD%9C/#more

* Bug fixes and man page updates.


20190822

* GNU Parallel will be presented at Driving IT 2019:
  https://ida.dk/arrangementer-og-kurser/konferencer/driving-it#beskrivelse

* Linux Productivity Tools
  https://www.usenix.org/conference/lisa19/presentation/maheshwari

* Improve your reconnaissance performance by using GNU Parallel
  https://mailchi.mp/3f46ceb46357/improve-your-reconnaissance-performance-by-using-gnu-parallel

* Paralel İşler / İşlemler / Programlar Bash’de Nasıl Çalıştırılır?
  https://kaleinfo.com/2019/07/29/paralel-isler-islemler-programlar-bashde-nasil-calistirilir-2/

* Use POLYBAR to change WALLPAPER with GNU Parallel
  https://www.youtube.com/watch?v=rjYg-b_eiRU

* Finding the Balance Between Speed & Accuracy During an Internet-wide
  Port Scanning
  https://captmeelo.com/pentest/2019/07/29/port-scanning.html

* GNU Parallel Ryugu released
  https://linuxreviews.org/GNU_Parallel_Ryugu_released

* CO2017 - CW1 - Operating Systems & Networks - Shell scripting
  http://www.7daixie.com/2019071646302396.html

* Bug fixes and man page updates.


20190722

* {= uq; =} causes the replacement string to be unquoted. Example:
  parallel echo '{=uq;=}.jpg' ::: '*'

* --tagstring {=...=} is now evaluated for each line with --linebuffer.

* Use -J ./profile to read a profile in current dir.

* Speedup of startup by 40%: Find the parent shell differently on
  GNU/Linux, cache information about the CPU and which setpgrp method
  to use to make GNU Parallel start 40% faster.

* $PARALLEL_SSHLOGIN can be used in the command line.

* Occasionally sane: Simple usage of GNU parallel
  https://vfoley.xyz/parallel/

* How to run multiple bash scripts in parallel
  https://techieroop.com/how-to-run-multiple-bash-scripts-in-parallel/

* Announcing Oracle Solaris 11.4 SRU10
  https://blogs.oracle.com/solaris/announcing-oracle-solaris-114-sru10

* Руководство по использованию GNU Parallel https://zalinux.ru/?p=2623

* Bug fixes and man page updates.


20190622

* --shard can now take a column name and optionally a perl
  expression. Similar to --group-by and replacement strings.

* Using AWK and R to parse 25tb
  https://livefreeordichotomize.com/2019/06/04/using_awk_and_r_to_parse_25tb/

* Parallel and Visual testing with Behat
  http://parallelandvisualtestingwithbehat.blogspot.com/p/blog-page.html

* 维基百科，自由的百科全书https://zh.wikipedia.org/wiki/GNU_parallel

* Bug fixes and man page updates.


20190522

* --group-by groups lines depending on value of a column. The value
  can be computed.

* How to compress (bzip / gzip) a very large text quickly?
  https://medium.com/@gchandra/how-to-compress-bzip-gzip-a-very-large-text-quickly-27c11f4c6681

* Simple tutorial to install & use GNU Parallel
  https://medium.com/@gchandra/simple-tutorial-to-install-use-gnu-parallel-79251120d618

* Introducing Parallel into Shell
  https://petelawson.com/post/parallel-in-shell/

* Bug fixes and man page updates.


20190422

* Invitation to the 10 years anniversary next year.

* Bug fixes and man page updates.


20190322

* SIGTERM is changed to SIGHUP, so sending SIGHUP will make GNU
  Parallel start no more jobs, but wait for running jobs to finish.

* SIGTERM SIGTERM is changed to SIGTERM, so sending SIGTERM will make
  GNU Parallel kill all running jobs.

* GNU Parallel now includes a cheat sheet: parallel_cheat.pdf

* High Throughput Computing on RMACC Summit and Beyond
  https://calendar.colorado.edu/event/high_throughput_computing_on_rmacc_summit_and_beyond#.XH2NBhB7mV4

* GNU Parallel Cheat Sheet by cpriest
  https://www.cheatography.com/cpriest/cheat-sheets/gnu-parallel/

* Use Multiple CPU Cores(Parallelize) with Single Threaded Linux
  Commands
  http://xensoft.com/use-multiple-cpu-cores-parallelize-with-single-threaded-linux-commands/

* Bug fixes and man page updates.


20190222

* --shard makes it possible to send input to a the same jobslot based
  on the value in one column of the input. It is similar to sharding
  in databases.

* --shellquote --shellquote will shell quote the input twice.

* GNU Parallel is available in Termux
  https://github.com/termux/termux-packages/tree/master/packages/parallel

* Linux, command line & MetaCentrum
  https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf

* How to supercharge your bash workflows with GNU parallel
  https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141

* GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI

* Parallelizing Freesurfer blog.cogneurostats.com/?p=148

* FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw

* FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/

* Come ridimensionare 10k foto con la riga di comando
  https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/

* 并行处理 – Gnu Parallel：嵌套并行
  https://codeday.me/bug/20190122/552902.html

* シェルスクリプトでコマンドを並列実行する方法
  https://www.kwbtblog.com/entry/2019/01/12/020423

* Bug fixes and man page updates.


20190122

* 'env_parallel --end-session' makes it possible to nest 'env_parallel
  --session'

* Using GNU Parallel in pentesting https://youtu.be/mZ0OUJmkIlA?t=873

* Supercomputer Workshop: Feb 1&7
  http://www.ece.unm.edu/featured-students/supercomputer-workshop-feb-17.html

* Bug fixes and man page updates.


20181222

* Better /proc/cpuinfo parser.

* Simpler job scheduling flow.

* MPGI Workshop: Job Parallelization with Task Arrays and GNU Parallel
  https://www.msi.umn.edu/tutorials/mpgi-workshop-module-4

* CONCOCT uses GNU Parallel
  https://media.readthedocs.org/pdf/concoct/latest/concoct.pdf

* If you use SLURM read
  https://wiki.hpc.uconn.edu/index.php/Advanced_SLURM

* すぐ忘れてしまう、仕事で使う技
  https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c

* Bug fixes and man page updates.


20181122

* Experimental simpler job flow control.

* 時間がかかるコマンドを GNU parallel で 並列実行する
  https://qiita.com//grohiro/items/4db3fa951a4778c5c479

* Bug fixes and man page updates.


20181022

* env_parallel.fish: --session support (alpha quality)

* GNU Parallel was cited in: High-throughput sequencing of murine
  immunoglobulin heavy chain repertoires using single side unique
  molecular identifiers on an Ion Torrent PGM
  https://doi.org/10.18632/oncotarget.25493

* GNU parallel in Japanese Wikipedia
  https://ja.wikipedia.org/wiki/GNU_parallel

* Outils de paramétrisation des tâches: lots de tâches, GNU Parallel
  https://www.eventbrite.ca/e/inscription-outils-de-parametrisation-des-taches-lots-de-taches-gnu-parallel-et-bqtools-midi-conference-de-50271076142

* Bug fixes and man page updates.


20180922

* Minix is supported again.

* Updated graph showing GNU Parallel's overhead per job for each
  version. https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf

* Intro to Computing at CARC includes introduction to GNU Parallel
  http://carc.unm.edu/education--training/workshops-and-seminars.html

* Fast-GBS uses GNU Parallel https://bitbucket.org/jerlar73/fast-gbs/wiki/Home

* Belgium at 10 m resolution in July 2018 http://www.cesbio.ups-tlse.fr/multitemp/?p=14116

* Bug fixes and man page updates.


20180822

* parset sets exit code.

* How to install GNU Parallel
  https://www.techrepublic.com/videos/how-to-install-gnu-parallel/

* Bug fixes and man page updates.


20180722

* The quoting engine has been changed. Instead of using \-quoting GNU
  Parallel now uses '-quoting in bash/ash/dash/ksh. This should
  improve compatibility with different locales. This is a big change
  causing this release to be alpha quality.

* The CPU calculation has changed. By default GNU Parallel uses the
  number of CPU threads as the number of CPUs. This can be changed to
  the number of CPU cores or number of CPU sockets with
  --use-cores-instead-of-threads or --use-sockets-instead-of-threads.

* The detected number of sockets, cores, and threads can be shown with
  --number-of-sockets, --number-of-cores, and --number-of-threads.

* env_parallel now support mksh using env_parallel.mksh.

* GNU Parallel is distributed as part of Snippy
  https://github.com/tseemann/snippy

* GNU Parallel: Ejecutar comandos simultáneamente en Linux
  https://esgeeks.com/gnu-parallel-ejecutar-comandos-simultaneo-linux/

* Parallel download genomic data with GNU-Parallel
  https://digibio.blogspot.com/search/label/GNU-Parallel

* Bug fixes and man page updates.


20180622

* Deal better with multibyte chars by forcing LC_ALL=C.

* GNU Parallel was introduced in Pincount Podcast:
  https://pincountpodcast.com/episodes/29.html

* GNU Parallel was shown on Danish national news for 1.7 seconds: dr.dk

* How to run Linux commands simultaneously with GNU Parallel
  https://www.techrepublic.com/article/how-to-run-commands-simultaneously-with-gnu-parallel/#ftag=RSS56d97e7

* Easy parallelization with GNU parallel
  http://mpharrigan.com/2016/08/02/parallel.html

* GNU Parallel for mutlithreaded tasks
  http://slhogle.github.io/2016/gnu-parallel/

* A GNU Parallel Clustering Demo
  https://www.crowdsupply.com/ground-electronics/circumference/updates/a-gnu-parallel-clustering-demo

* 使用 GNU Parallel 提高 Linux 命令行执行效率
  https://linux.cn/article-9718-1.html

* Ejecutando tareas desde consola simultáneamente con GNU Parallel
  https://poesiabinaria.net/2018/06/ejecutando-tareas-desde-consola-simultaneamente-gnu-parallel/

* Cómo ejecutar varias tareas simultáneamente en el terminal con GNU
  Parallel
  https://www.ubuntizando.com/como-ejecutar-varias-tareas-simultaneamente-en-el-terminal-con-gnu-parallel/

* GNU Parallel 활용 가이드 http://genoglobe.kr/kribb/gnu_parallel

* Bug fixes and man page updates.


20180522

* --tty allows for more programs accessing /dev/tty in parallel. Some
  programs require tty access without using it.

* env_parallel --session will record names in current environment in
  $PARALLEL_IGNORED_NAMES and exit. It is only used with env_parallel,
  and can work like --record-env but in a single session.

* 35 day course: Linux shell scripting and text processing for big
  data https://comquest.in/training

* How To Use Your Entire CPU In Bash With Parallel
  https://bash-prompt.net/guides/parallell-bash/

* An easy way to run parallel jobs on Stampede2
  https://blog.uta.edu/xus/2017/09/29/an-easy-way-to-run-parallel-jobs-on-stampede2/

* Get more done at the Linux command line with GNU Parallel
  https://opensource.com/article/18/5/gnu-parallel

* Save Time with Modern Search Techniques
  https://www.sans.org/summit-archives/file/summit-archive-1524582079.pdf

* GNU Parallel: haz más cosas simultáneamente en el terminal
  https://blog.desdelinux.net/gnu-parallel-haz-mas-cosas-simultaneamente-en-el-terminal/

* 「今日から使い切る」ための GNU Parallelによる並列処理入門
  https://www.slideshare.net/koji_matsuda/gnu-parallel

* Bug fixes and man page updates.


20180422

* --csv makes GNU Parallel parse the input sources as CSV. When used
  with --pipe it only passes full CSV-records.

* Time in --bar is printed as 1d02h03m04s.

* Optimization of --tee: It spawns a process less per value.

* The GNU Parallel 2018 book is now available:
  http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html

* Modern pentest tricks for faster, wider, greater engagement (15)
  https://conference.hitb.org/hitbsecconf2018ams/materials/D1%20COMMSEC%20-%20Thomas%20Debize%20-%20Modern%20Pentest%20Tricks%20for%20Faster,%20Wider,%20Greater%20Engagements.pdf

* Running many serial jobs efficiently
  https://userinfo.surfsara.nl/documentation/running-many-serial-jobs-efficiently

* GNU Parallel: как сохранить результаты нескольких команд для
  переменной? http://fliplinux.com/gnu-parallel-6.html

* Running Multiple Commands in Parallel on a GNU Linux
  https://www.youtube.com/watch?v=sHpTywpb4_4

* Klaatu covers the documentation of GNU parallel in episode 12x15
  http://gnuworldorder.info/

* Bug fixes and man page updates.


20180322

* niceload -p can now take multiple pids separated by comma

* --timeout gives a warning when killing processes

* --embed now uses the same code for all supported shells

* --delay can now take arguments like 1h12m07s

* Parallel. Straight from your command line
  https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee

* GNU Parallel was used in POAP-Parallelized Open Babel & Autodock
  suite Pipeline https://github.com/inpacdb/POAP

* Pi Cluster Parallel Script First Fire
  https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/

* How to Restore MySQL Logical Backup at Maximum Speed
  https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/

* Bug fixes and man page updates.


20180222

* --embed makes it possible to embed GNU parallel in a shell
  script. This is useful if you need to distribute your script to
  someone who does not want to install GNU parallel.

* Parallelize Your Large Batches of Small Jobs
  https://amito.me/2018/02/Parallelize-Your-Large-Batches-of-Small-Jobs/

* Klaatu expounds upon xargs and talks GNU parallel in episode 12x6
  http://gnuworldorder.info/

* How to use parallel to speed up your work
  https://mike42.me/blog/how-to-use-parallel-to-speed-up-your-work

* Transient compute clustering with GNU Parallel and sshfs
  https://dennismungai.wordpress.com/2018/02/06/transient-compute-clustering-with-gnu-parallel-and-sshfs/
 
* Useful Examples of ffmpeg and GNU parallel on the command-line
  https://dennismungai.wordpress.com/2018/02/06/useful-examples-of-ffmpeg-and-gnu-parallel-on-the-command-line/

* Data Science at the Command Line (Chapter 8.3)
  https://www.datascienceatthecommandline.com/

* Bug fixes and man page updates.


20180122

* bash / 병렬 https://code.i-harness.com/ko/docs/bash/2a1a

* 15分钟神器gnu parallel 入门观止
  http://www.ezilin.com/2018/01/15gnu-parallel.html

* How To Run Multiple Commands In Parallel on Linux
  https://www.slashroot.in/how-run-multiple-commands-parallel-linux

* Bug fixes and man page updates.


20171222

* env_parset for ash, dash, ksh, sh, zsh

* Automatically create hostgroups if argument ends in @sshlogin

* Tips for running jobs on your VM
  https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel

* Node-local scheduling
  https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling

* GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel

* GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74

* Using GNU Parallel
  https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel

* Bug fixes and man page updates.


20171122

* Using GNU Parallel to speed up Google Cloud Infrastructure
  management
  https://medium.com/@pczarkowski/using-gnu-parallel-to-speed-up-google-cloud-infrastructure-management-53e5c555ec05

* What is gnu parallel
  http://wiki.chpc.ac.za/howto:bioinformatics:gnu-parallel

* Parallel, Scripts, Clusters, & Easy Use
  https://chiefio.wordpress.com/2017/11/10/parallel-scripts-clusters-easy-use/

* Bug fixes and man page updates.


20171022

* Initial support for XDG Base Directory $XDG_* environment variables.

* Validating half a million TIFF files. Part
  Two
  https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/

* Turing data science class: Cluster computing
  https://www.turing.ac.uk/events/masterclass-cluster-computing/

* Butlin:Unix for Bioinformatics - advanced tutorial
  https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial

* พยายามใช้ CPU ให้ครบทุก CORE
  https://veer66.wordpress.com/2017/09/02/use-multi-core/

* Examples on using GNU Parallel
  https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378

* Bug fixes and man page updates.


20170922

* Use '--limit myprog' to make a dynamic job limit. Just return 0 to
  spawn another job, 1 to not spawn another job, and 2 to kill the
  youngest job.

* PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
  (Default: -rlDzR).

* Download all of humble bundle books in parallel
  https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel

* Bug fixes and man page updates.


20170822

* --line-buffer no longer uses tempfiles. This is faster and makes it
  possible for a single process to output more data than there is free
  disk space.

* Vote for GNU Parallel's community ads on
  http://meta.unix.stackexchange.com/a/4356/2972
  http://meta.askubuntu.com/a/16750/22307
  http://meta.serverfault.com/a/9040/45704

* Edit images with GNU Parallel and ImageMagick
  https://fedoramagazine.org/edit-images-parallel-imagemagick/

* Running Bash Commands in Parallel
  https://dzone.com/articles/running-bash-commands-in-parallel-1

* Today I Learned: GNU parallel, plate tectonics
  https://medium.com/@nornagon/today-i-learned-gnu-parallel-plate-tectonics-9fcf24045e63

* GNU Parallel Tutorial
  https://www.upf.edu/web/sct-sit/gnu-parallel-tutorial

* Validating half a million TIFF files
  http://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/

* Blender and GNU Parallel
  https://www.blendernation.com/2017/08/16/blender-gnu-parallel/

* Quick Introduction to GNU Parallel
  https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel

* A simple distributed animation render example using GNU Parallel
  https://gitlab.com/skororu/scripts

* Do stuff on things, in parallel
  http://blogs.fluidinfo.com/terry/2017/08/05/do-stuff-on-things-in-parallel/

* Bash And GNU Parallel NGS Bidniz
  http://ino.pm/outreach/presentations/2014/03/genomics-wranglers/index.html

* Using for loop vs Gnu parallel for BLAST
  http://www.ettemalab.org/using-for-loop-vs-gnu-parallel-for-blast/

* 并行rsync https://gxnotes.com/article/175866.html

* Bug fixes and man page updates.


20170722

* Vote for GNU Parallel's community ads on
  http://meta.unix.stackexchange.com/a/4356/2972
  http://meta.askubuntu.com/a/16750/22307
  http://meta.serverfault.com/a/9040/45704

* GNU Parallel was cited in: Hayabusa: Simple and Fast Full-Text
  Search Engine for Massive System Log Data
  http://dl.acm.org/citation.cfm?id=3095788

* コマンドの並列化を行える『GNU parallel』の個人的使い方まとめ
  https://orebibou.com/2017/07/%E3%82%B3%E3%83%9E%E3%83%B3%E3%83%89%E3%81%AE%E4%B8%A6%E5%88%97%E5%8C%96%E3%82%92%E8%A1%8C%E3%81%88%E3%82%8B%E3%80%8Egnu-parallel%E3%80%8F%E3%81%AE%E5%80%8B%E4%BA%BA%E7%9A%84%E4%BD%BF%E3%81%84/

* How to play and play with thousands of digitized 78rpm records
  https://blog.archive.org/2017/07/10/how-to-play-and-play-with-78rpm-record-transfers/

* 并行一个for循环 https://gxnotes.com/article/130363.html

* RFC 8142: GeoJSON Text Sequences
  https://sgillies.net/2017/05/18/rfc-8142-geojson-text-sequences.html

* Git auto fetch script I run every day
  https://lukas.zapletalovi.com/2017/07/git-auto-fetch-script-i-run-every-day.html

* cores, cpus and threads
  http://crazyhottommy.blogspot.de/2017/07/cores-cpus-and-threads.html

* Bug fixes and man page updates.


20170622

* The command line can now contain \257 (Macron) or UTF characters
  containing \257.

* Vote for GNU Parallel's community ads on
  http://meta.unix.stackexchange.com/a/4356/2972
  http://meta.askubuntu.com/a/16750/22307
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* Graph for overhead for 1000 jobs has been updated. It remains
  steadily at 3.5 ms per job on a 1.7 GHz machine
  https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf

* GNU Parallel was cited in: The topology of the directed clique
  complex as a network invariant
  https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y

* GNU Parallel was cited in: Improving Optical Character Recognition
  of Finnish Historical Newspapers with a Combination of Fraktur &
  Antiqua Models and Image
  http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf

* GNU Parallel was cited in: Parallel Execution of Structural Mechanic
  Tasks with Use of Small Supercomputers
  http://www.sciencedirect.com/science/article/pii/S1877705817324815

* GNU Parallel was cited in: Integration of a Multilingual Preordering
  Component into a Commercial SMT Platform
  https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf

* Tips For Running Jobs On Your VM
  https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel

* Speed up ML model development with GNU Parallel
  https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel

* Parallelizing a Python Function for the Extremely Lazy
  http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/

* 使用GNU parallel
  http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html

* Bug fixes and man page updates.


20170522

* --timeout can now use s=second,m=minute,h=hour,d=day.

* --dr is now an alias for --dry-run.

* Vote for GNU Parallel's community ads on
  http://meta.unix.stackexchange.com/a/4356/2972
  http://meta.askubuntu.com/a/16750/22307
  http://meta.serverfault.com/a/9040/45704

* GNU Parallel was cited in: Feature Detection in Visual Cortex during
  Different Functional States
  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/

* GNU Parallel was cited in: From genotype to phenotype: inferring
  relationships between microbial traits and genomic components
  https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf

* GNU Parallel was cited in: Designing fecal microbiota transplant
  trials that account for differences in donor stool efficacy
  http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf

* GNU Parallel was cited in: Assessing the predictability of
  anharmonic vibrational modes at the example of hydroxyl groups - ad
  hoc construction of localised modes and the influence of structural
  solute–solvent motifs
  http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract

* GNU Parallel was cited in: Mapping Environmental Influences on
  Utility Fire Threat
  ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf

* GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
  Glass Transition in One Dimension
  https://arxiv.org/pdf/1704.02257.pdf

* GNU Parallel was cited in: Online Automatic Post-editing for MT in a
  Multi-Domain Translation Environment
  https://www.aclweb.org/anthology/E/E17/E17-1050.pdf

* GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
  moderate-resolution reflective solar bands against MODIS Aqua over
  dark water scenes
  http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf

* GNU Parallel was cited in: Scattering Networks: Efficient 2D
  Implementation And Application To Melanoma Classification
  http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf

* GNU Parallel was cited in: Genome-scale detection of positive
  selection in 9 primates predicts human-virus evolutionary conflicts
  http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf

* GNU Parallel is used in: Creates a speech dataset for deep learning
  https://github.com/jupiter126/Create_Speech_Dataset

* GNU Parallel is used in: Parse and process the demixing secrets
  dataset (DSD100) https://github.com/faroit/dsdtools

* First glance at the gnu parallel utility
  https://ibiscybernetics.com/blog/2017-04-05.html

* Installing parallel from source
  https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/

* How to run command or code in parallel in bash shell under Linux or
  Unix
  https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/

* Parallel Serial Jobs Using GNU Parallel
  http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf

* GNU Parallel or How to list millions of S3 objects
  https://joeray.me/gnu-parallel-how-to-list-millions-objects.html

* Which Is the Best Tool for Copying a Large Directory Tree Locally?
  http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/

* Bug fixes and man page updates.


20170422

* --halt supports done in addition to success and fail.

* parset will set variables in parallel in Bash.

* Perl 5.6 on Irix is no longer supported.

* Vote for GNU Parallel's community ads on
  http://meta.unix.stackexchange.com/a/4356/2972
  http://meta.askubuntu.com/a/16750/22307
  http://meta.serverfault.com/a/9040/45704

* GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
  from transcriptomic data using MapReduce
  http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575

* GNU Parallel was cited in: StrAuto: automation and parallelization
  of STRUCTURE analysis
  http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0

* GNU Parallel was cited in: Trespassing the Boundaries: Labeling
  Temporal Bounds for Object Interactions in Egocentric Video
  https://128.84.21.199/pdf/1703.09026.pdf

* GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup

* Using GNU Parallel
  https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel

* Find and xargs and parallel
  http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel

* Quick Introduction to GNU Parallel
  https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel

* Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line

* Bedtools笔记 http://www.jianshu.com/p/67b0665490ac

* Bug fixes and man page updates.


20170322

* --rpl can now take arguments by adding '(regexp)' in the replacement
  string.

* Vote for GNU Parallel's community ads on
  http://meta.unix.stackexchange.com/a/4356/2972
  http://meta.askubuntu.com/a/16750/22307
  http://meta.serverfault.com/a/9040/45704

* GNU Parallel was cited in: shmlast: An improved implementation of
  Conditional Reciprocal Best Hits with LAST and Python
  https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7

* GNU Parallel was cited in: Prediction of relativistic electron flux
  in the Earth’s outer radiation belt at geostationary orbit by
  adaptive methods
  https://link.springer.com/article/10.1134/S0016793217010108

* GNU Parallel was cited in: Higher likelihood of multiple bit-flips
  due to neutron-induced strikes on logic gates
  https://arxiv.org/pdf/1612.08239.pdf

* GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
  Calculation of Hybrid Classical and Quantum Free Energies
  http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506

* GNU Parallel was cited in: Learning string distance with smoothing
  for OCR spelling correction
  https://link.springer.com/article/10.1007/s11042-016-4185-5

* GNU Parallel was cited in: The Breakdown of String Perturbation
  Theory for Many External Particles
  https://arxiv.org/pdf/1611.08003.pdf

* GNU Parallel was cited in: Operations Research Applications in
  Nuclear Energy
  https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y

* GNU Parallel was cited in: Parallel Computing: GNU Parallel
  http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/

* Stig Sandbeck Mathisen: Change All The Passwords (Again)
  http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/

* Trabalhando como Paralelismo no Bash usando o GNU Parallel
  http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/

* GNU parallel と SQL*Loader 組み合わせ実行例
  https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader

* Bug fixes and man page updates.


20170222

* env_parallel now supports /bin/sh, ash, dash.

* --tee will pipe all data to all jobs. Used with --pipe/--pipepart
  and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
  {} | wc -l' ::: {0..9}

* If --results {replstr} ends in /: save in dir. Otherwise save as
  file. Example: parallel --results {} echo {} ::: a b c

* Vote for GNU Parallel's community ads on
  http://meta.unix.stackexchange.com/a/4356/2972
  http://meta.askubuntu.com/a/16750/22307
  http://meta.serverfault.com/a/9040/45704

* GNU Parallel was cited in: Low-delay forwarding with multiple
  candidates for VANETs using multi-criteria decision making
  http://ieeexplore.ieee.org/document/7835961/

* GNU Parallel was cited in: An Integrated Simulator and Dataset that
  Combines Grasping and Vision for Deep Learning
  https://arxiv.org/pdf/1702.02103.pdf

* GNU Parallel was cited in: A Bayesian model selection approach for
  identifying differentially expressed transcripts from RNA sequencing
  data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full

* GNU Parallel was cited in: The impact of copy number variation on
  gout, and the apple genome
  https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3

* GNU Parallel was cited in: Reaction rates for reaction-diffusion
  kinetics on unstructured meshes
  http://aip.scitation.org/doi/10.1063/1.4975167

* GNU Parallel was cited in: Modeling prediction error improves power
  of transcriptome-wide association studies
  http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf

* GNU Parallel was cited in: Proper experimental design requires
  randomization/balancing of molecular ecology experiments
  http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf

* GNU Parallel was cited in: Experiment-based thermal micromagnetic
  simulations of the magnetization reversal for ns-range clocked
  nanomagnetic logic
  http://aip.scitation.org/doi/full/10.1063/1.4974021

* GNU Parallel was cited in: The University of Edinburgh’s systems
  submission to the MT task at IWSLT
  http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf

* Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs

* Job: DevOps Engineer/Senior Systems Administrator in New York, New
  York
  http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/

* Training in GNU Parallel:
  https://www.carc.unm.edu/education-outreach/workshops--training/

* Training in GNU Parallel:
  http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00

* Batch Convert Images from PNG to JPEG
  http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html

* Accelerating Oxford Nanopore Basecalling
  http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/

* parallel и imagemagick в loop на bash
  https://www.linux.org.ru/forum/development/13190247

* Bug fixes and man page updates.


20170206alpha

* --tee introduced.


20170122

* sql now uses a temporary credentials file for MySQL to avoid
  warning.

* --sqlmaster and --sqlworker have been reworked.

* --sqlworker only reads from the DBURL: any command and any arguments
  are ignored.

* --sqlmaster +DBURL will append different commands to the DBURL and
  not erase the table.

* If --results contain a replacement string, no tree structure with
  args will be generated.

* --fg --tmux or --fg --tmuxpane will connect to the tmux.

* GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
  Classification, and Measurement
  https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf

* GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
  Social and Solitary Wild Bees Detects Associations with Eukaryote
  Parasites and New Viruses
  http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456

* GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
  of Metric Temporal Logic
  http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf

* 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843

* GNU Parallel as a queuing system:
  http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html

* AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
  slide 45
  http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
  and https://youtu.be/PlTuJx4VnGw?t=30m16s

* Bug fixes and man page updates.


20161222

* --results foo.csv will save output as a CSV-file. Can be directly
  imported into R or LibreCalc.

* When using --pipepart a negative --block-size is not interpreted as
  a block size but as the number of blocks each jobslot should have.

* --sqlmaster/--sqlandworker will append jobs to the DBURL if the
  DBURL is prepended with +.

* GNU Parallel was cited in: A cloud-based workflow to quantify
  transcript-expression levels in public cancer compendia
  http://www.nature.com/articles/srep39259

* GNU Parallel was cited in: Determination of crystal structures of
  proteins of unknown identity using a marathon molecular replacement
  procedure: Structure of Stenotrophomonas maltophilia
  phosphate-binding protein
  https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein

* GNU Parallel was cited in: Large-scale benchmarking reveals false
  discoveries and count transformation sensitivity in 16S rRNA gene
  amplicon data analysis methods used in microbiome studies
  http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8

* GNU Parallel was cited in: Decomposing Images into Layers via
  RGB-space Geometry
  https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf

* Transient compute clustering with GNU Parallel and sshfs
  https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4

* 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
  http://www.tecmint.com/linux-image-conversion-tools/

* All's Fair in Love and Distributed Storage
  http://cohesity.com/blog/alls-fair-love-distributed-storage/

* How can I use GNU Parallel to run a lot of commands in parallel
  https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel

* 정해영의 블로그 - JEONG Haeyoung's blog
  http://blog.genoglobe.com/2016/11/gnu-parallel.html

* 在Linux下将PNG和JPG批量互转的四种方法
  http://os.51cto.com/art/201612/524182.htm

* Running in parallel http://tomkimpson.com/howto/gnuparallel/

* Taco Bell Parallel Programming
  https://giorgos.sealabs.net/taco-bell-parallel-programming.html

* Bug fixes and man page updates.


20161122

* --record-env can now be used with env_parallel for bash, ksh, pdksh,
  and zsh.

* GNU Parallel was cited in: An improved implementation of Conditional
  Reciprocal Best Hits with LAST and Python
  https://pypi.python.org/pypi/shmlast/1.0.3

* GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
  and target pathways
  http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full

* GNU/Parallel – Run multiple commands simultaneously
  https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/

* Tutorial: Parallel web scraping with CasperJS and GNU Parallel
  http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/

* Bug fixes and man page updates.


20161022

* First command no longer gets stdin as it causes unpredictable issues.

* GNU Parallel was cited in: Efficiently parallelized modeling of
  tightly focused, large bandwidth laser pulses
  https://arxiv.org/pdf/1609.08146v1.pdf

* How to crunch lots of geodata in parallel
  http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/

* GNU parallel is my new toaster
  http://amedee.me/gnu-parallel-is-my-new-toaster/index.html

* Bug fixes and man page updates.


20160922

* parcat - cat files or fifos in parallel

* GNU Parallel was cited in: Velocity: A Netflow Based Optimized
  Geo-IP Lookup Tool
  https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y

* GNU Parallel was cited in: Viral deep sequencing needs an adaptive
  approach: IRMA, the iterative refinement meta-assembler
  http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/

* Using GNU Parallel and ImageMagick for Conversions
  https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/

* Training in GNU Parallel
  http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf

* Chown Ceph OSD data directory using GNU Parallel
  http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/

* FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs

* dDocent: A guide to ddRAD sequencing
  https://ddocent.wordpress.com/ddocent-pipeline-user-guide/

* SOFTWARE GNU Parallel
  http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html

* Bug fixes and man page updates.


20160822

* --tmuxpane opens jobs in panes in tmux. Useful if you want to
  monitor progress of less than 100 simultaneous jobs.

* --linebuffer now treats \r as line ending, too.

* Perl changes forces use of floats to be given with leading zero, so
  0.1 and not .1

* --xapply renamed to --link.

* Support for pdksh will fade until someone packages it for Ubuntu 16.

* GNU Parallel was cited in: Exome sequencing of geographically
  diverse barley landraces and wild relatives gives insights into
  environmental adaptation
  http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references

* GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
  Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf

* Easy parallelization with GNU parallel
  http://mpharrigan.com/2016/08/02/parallel.html

* Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
  Markus Kliegl
  http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/

* Parallel import
  http://www.manitou-mail.org/blog/2016/07/parallel-import/

* Large file batch processing using NodeJs and GNU Parallel
  http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/

* Bug fixes and man page updates.


20160722

* env_parallel is now ready for wider testing. It is still beta
  quality.

* env_parallel is heavily modified for all shells and testing has been
  increased.

* Selectively choosing what to export using --env now works for
  env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).

* --round-robin now gives more work to a job that processes faster
  instead of same amount to all jobs.

* --pipepart works on block devices on GNU/Linux.

* GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
  Introns for Phylogenetics from High-Throughput Sequencing Reads
  Using Target Enrichment
  http://www.bioone.org/doi/full/10.3732/apps.1600016

* GNU Parallel was cited in: StrAuto - Automation and Parallelization
  of STRUCTURE Analysis
  http://www.crypticlineage.net/download/strauto/strauto_doc.pdf

* GNU Parallel was cited in: Tools and techniques for computational
  reproducibility
  http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4

* GNU Parallel was cited in: FlashPCA: fast sparse canonical
  correlation analysis of genomic data
  http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf

* GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
  Fine-tuning Query Expansion and Unification Strategies
  http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf

* GNU Parallel was cited in: The Evolution and Fate of
  Super-Chandrasekhar Mass White Dwarf Merger Remnants
  http://arxiv.org/pdf/1606.02300.pdf

* GNU Parallel was cited in: Evaluation of Coastal Scatterometer
  Products
  https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf

* GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck

* The iconv slurp misfeature
  http://www.openfusion.net/linux/iconv_slurp_misfeature

* แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/

* Bug fixes and man page updates.


20160622

* $PATH can now be exported using --env PATH. Useful if GNU Parallel
  is not in your path on remote machines.

* If --block is left out, --pipepart will use a block size that will
  result in 10 jobs per jobslot.

* The cookie from 2016-01-04 was won by Morgan Rodgers on the
  2016-06-06 after 5 months.

* Vote for GNU Parallel's community ad on
  https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046

* GNU Parallel was cited in: Genotypic Resistance Tests Sequences
  Reveal the Role of Marginalized Populations in HIV-1 Transmission in
  Switzerland http://www.nature.com/articles/srep27580

* GNU Parallel was cited in: A Deep-Learning Approach for Operation of
  an Automated Realtime Flare Forecast
  https://arxiv.org/pdf/1606.01587.pdf

* Unix parallel: Populating all the USB sticks
  http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/

* GNU Parallel is a fantastic utility https://www.dray.be/parallel/

* Combining a large number of VCF files
  https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/

* Useful Scraping Techniques
  http://blog.apps.npr.org/2016/06/17/scraping-tips.html

* Tools of the trade
  http://onox.com.br/2015/05/tools-of-the-trade/#more-198

* Armslist scraper https://github.com/nprapps/armslist-scraper/

* Bug fixes and man page updates.


20160522

* niceload --net pauses the program if the internet connection is
  overloaded.

* Vote for GNU Parallel's community ad on
  https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046

* Updated speed comparison between versions
  https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf

* GNU Parallel was cited in: Improving computation efficiency by
  parallel programming
  http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf

* GNU Parallel was cited in: A supernova feedback implementation for
  the astrophysical simulation software Arepo
  https://arxiv.org/abs/1604.06071

* GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
  resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf

* GNU Parallel was cited in: Host-pathogen co-evolution and the
  emergence of broadly neutralizing antibodies in chronic infections
  https://arxiv.org/abs/1512.06296

* GNU Parallel was cited in: Pacific People, Metabolic Disease and
  Evolutionary Processes: a mitochondrial DNA study
  https://otago.ourarchive.ac.nz/handle/10523/6340

* GNU Parallel was cited in: The effect of domain modeling on
  efficiency of planning: Lessons from the Nomystery domain
  http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131

* GNU Parallel was cited in: Oops, my tests broke the build: An
  analysis of Travis CI builds with GitHub
  https://peerj.com/preprints/1984/

* GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
  Distinct Set of Genomic Properties Over 40 Million Years of
  Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html

* GNU Parallel was cited in: An Empirical Comparison of Neural
  Architectures for Reinforcement Learning in Partially Observable
  Environments
  http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf

* GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
  Management in Requester-wins Hardware Transactional Memory
  http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072

* GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
  Mutation-Induced Stability Changes with Feature-Based Multiple
  Models
  http://www.sciencedirect.com/science/article/pii/S0022283616000310

* GNU Parallel was cited in: A new orthology assessment method for
  phylogenomic data: Unrooted Phylogenetic Orthology
  http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
  https://github.com/ballesterus/UPhO

* GNU Parallel was cited in: Distinctive Interest Point Selection for
  Efficient Near-duplicate Image Retrieval
  http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172

* GNU Parallel was cited in: The Evolution of C Programming Practices:
  A Study of the Unix Operating System 1973–2015
  https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
  thumbnail graphs I have ever seen scattered all over the text)

* GNU Parallel was cited in: Data processing pipeline for serial
  femtosecond crystallography at SACLA
  http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html

* GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
  Dynamics http://arxiv.org/pdf/1512.01460.pdf

* GNU Parallel was cited in: Genomic legacy of the African cheetah,
  Acinonyx jubatus
  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf

* GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
  Characterization of IPv6 Network Security Policy
  http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf

* GNU Parallel was cited in: Comprehensive Annotation of the
  Parastagonospora nodorum Reference Genome Using Next-Generation
  Genomics, Transcriptomics and Proteogenomics
  http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF

* GNU Parallel was cited in: How attention influences perceptual
  decision making: Single-trial EEG correlates of drift-diffusion
  model parameters http://www.cidlab.com/prints/nunez2016attention.pdf

* GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
  Using High-Throughput Sequencing Reads
  http://repository.upenn.edu/edissertations/1460/

* GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
  Processing with Associative Transducers
  http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf

* GNU Parallel was cited in: PVAIR: Partial Variable Assignment
  InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf

* GNU Parallel was cited in: Comparative Cladistics: Fossils,
  Morphological Data Partitions and Lost Branches in the Fossil Tree
  of Life http://opus.bath.ac.uk/43955/

* GNU Parallel was cited in: Shannon: An Information-Optimal de
  NovoRNA-Seq Assembler
  http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf

* GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
  Estimation for Coastal Ocean Modeling
  https://repositories.lib.utexas.edu/handle/2152/32435

* GNU Parallel was cited in: Computational Design of DNA-Binding
  Proteins
  http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16

* GNU Parallel was cited in: Reference genotype and exome data from an
  Australian Aboriginal population for health-based research
  http://www.nature.com/articles/sdata201623

* GNU Parallel was cited in: Do aye-ayes echolocate?
  http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf

* GNU Parallel was cited in: Functional enrichments of disease
  variants across thousands of independent loci in eight diseases
  http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf

* GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
  microbial trait analyzer
  http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf

* GNU Parallel was mentioned in: Fast Playback Framework for Analysis
  of Ground-Based Doppler Radar Observations Using MapReduce
  Technology
  http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1

* NCBI blast tutorial
  https://github.com/enormandeau/ncbi_blast_tutorial

* Distributed Preservation Made Simple
  https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/

* Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html

* Bug fixes and man page updates.


20160422

* :::+ and ::::+ work like ::: and :::: but links this input source to
  the previous input source in a --xapply fashion. Contrary to
  --xapply values do not wrap: The shortest input source determines
  the length.

* --line-buffer --keep-order now outputs continously from the oldest
  job still running. This is more what you would expect than the
  earlier behaviour where --keep-order had no effect with
  --line-buffer.

* env_parallel supports tcsh, csh, pdksh. In fish it now supports
  arrays. In csh/tcsh it now supports variables, aliases, and arrays
  with no special chars. In pdksh it supports aliases, functions,
  variables, and arrays.

* Function exporting on Mac OS X works around old Bash version.

* Better CPU detection on OpenIndiana.

* GNU Parallel was cited in: Automatic Methods for Assisted
  Recruitment
  https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment

* GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
  for Natural SUSY with a R-Sneutrino LSP
  http://arxiv.org/pdf/1603.06130.pdf

* GNU Parallel was cited in: An Operational Radiometric Landsat
  Preprocessing Framework for Large-Area Time Series Applications
  https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf

* A basic demo of how GNU Parallel can speed up execution of commands
  https://www.youtube.com/watch?v=kl8LO2jcvMc

* qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2

* FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop

* Parallel Processing with Catmandu
  https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/

* GNU parallel 應用範例
  http://staypython.blogspot.dk/2016/04/gnu-parallel.html

* Bug fixes and man page updates.


20160322

* env_parallel is a function that exports the environment (functions,
  aliases, variables, and arrays) to GNU Parallel. Run 'man
  env_parallel' for details.

* niceload --prg now searches for substrings if no process with the
  name is found.

* GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
  Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf

* GNU Parallel was mentioned (with wrong citation) in: Dual Level
  Parallel Computations for LargeScale High-Fidelity Database to
  Design Aerospace Vehicles
  http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf

* Using ‘Parallel’ in Unix
  https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/

* JPEG Squish uses (and co-distributes) GNU Parallel:
  http://dantidswell.co.uk/jpeg-squish/

* Bug fixes and man page updates.


20160222

* Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
  http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
  http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
  http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893

* Daily Quick Tip: parallel
  https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582

* Downloading a list of URLs
  http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/

* Using GNU Parallel and ImageMagick for Conversions
  http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/

* Running bash commands in parallel
  http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html

* parallel processing in PDAL
  https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/

* A Million Text Files And A Single Laptop
  http://randyzwitch.com/gnu-parallel-medium-data/

* 「今日から使い切る」ための GNU Parallelによる並列処理入門
  http://www.slideshare.net/koji_matsuda/gnu-parallel

* Bug fixes and man page updates.


20160122

* --sql DBURL uses DBURL as storage for jobs and output. It does not
  run any jobs so it requires at least one --sqlworker. DBURL must
  point to a table.

* --sqlworker DBURL gets jobs from DBURL and stores the result back to
  DBURL.

* --sqlandworker is a shorthand for --sql and --sqlworker.

* --sqlworker requires the output of a single job to fit in memory.

* --results now also saves a file called 'seq' containing the sequence
  number.

* If $PARALLEL_ENV is a file, then that file will be read into
  $PARALLEL_ENV.

* man parallel_tutorial has been given an overhaul.

* --workdir now accepts replacementstrings.

* GNU Parallel was cited in: Possum - A Framework for
  Three-Dimensional Reconstruction of Brain Images from Serial
  Sections http://link.springer.com/article/10.1007/s12021-015-9286-1

* GNU Parallel was cited in: A Genetic Algorithm for the selection of
  structural MRI features for classification of Mild Cognitive
  Impairment and Alzheimer's Disease
  http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909

* GNU Parallel was cited in: The Effect of Domain Modeling on
  Performance of Planning Algorithms
  http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf

* Plotting time tables for jobs run by GNU Parallel
  https://github.com/ziotom78/plot_joblog

* GNU Parallel was used in: Mission Impossible: you have 1 minute to
  analyze the Ebola Genome https://www.biostars.org/p/119397

* GNU Parallel is used in LAST: http://last.cbrc.jp/

* Distributed Log Search Using GNU Parallel
  http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/

* Bug fixes and man page updates.


20151222

* --transfer is now an alias for --transferfile {}.

* --transferfile works like --transfer, but takes an argument like
  --return. This makes it possible to combine transferring files
  with multiple input sources: parallel -S server --tf {1} wc {2}
  {1} ::: * ::: -l -w -c

* total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
  $_=total_jobs() =}' ::: {1..50}

* GNU Parallel was cited in: Evolution and Learning in Heterogeneous
  Environments
  http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf

* GNU Parallel was cited in: Achieving Consistent Doppler Measurements
  from SDO/HMI Vector Field Inversions
  http://arxiv.org/pdf/1511.06500.pdf

* Flo uses GNU Parallel: https://github.com/wurmlab/flo

* 使用 GNU parallel 來平行運算
  http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing

* Bug fixes and man page updates.


20151122

* GNU Parallel packaged for CERN CentOS:
  http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html

* GNU Parallel was cited in: The Outer Solar System Origins Survey:
  I. Design and First-Quarter Discoveries
  http://arxiv.org/pdf/1511.02895.pdf

* GNU Parallel was cited in: Contrasting genetic architectures of
  schizophrenia and other complex diseases using fast
  variance-components analysis
  http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html

* GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
  using Support Vector Machines
  http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211

* GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
  Using Brownian Dynamics, Molecular Dynamics and Milestoning
  http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072

* GNU Parallel was cited in: A Detailed Characterization of Errors in
  Logic Circuits due to Single-Event Transients
  http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348

* GNU Parallel was cited in: Arabic Speaker Emotion Classification
  Using Rhythm Metrics and Neural Networks
  http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf

* GNU Parallel was cited in: Stride Search: a general algorithm for
  storm detection in high resolution climate data
  http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf

* GNU Parallel was cited in: Decomposing Digital Paintings into Layers
  via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf

* GNU Parallel was cited in: Structure and evolutionary history of a
  large family of NLR proteins in the zebrafish
  http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf

* GNU Parallel was cited in: Evolution of movement strategies under
  competitive interactions
  http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf

* Automating large numbers of tasks
  https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html

* Max out your IOPs with GNU Parallel
  http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/

* Bug fixes and man page updates.


20151022

* --plus makes it possible to use {##} as a shorthand for
  {= $_=$Global::JobQueue->total_jobs() =} which gives the the number
  of jobs to run in total.

* {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
  -m, and --xargs.

* GNU Parallel is now mostly compatible with lsh
  (http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
  autossh (http://www.harding.motd.ca/autossh/).

* --workdir ... now also works when run locally.

* GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
  regular graph http://arxiv.org/pdf/1509.05933.pdf

* GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
  genome analysis
  http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html

* GNU Parallel is used in TraitAR:
  https://testpypi.python.org/pypi/traitar/0.1.4

* A parallel and fast way to download multiple files
  http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html

* Usar GNU Parallel para aumentar el rendimiento de tus scripts
  http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/

* Bug fixes and man page updates.


20150922

* GNU Parallel was cited in: Flexible Modeling of Epidemics with an
  Empirical Bayes Framework
  http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382

* GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
  https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf

* GNU Parallel was cited in: A Scalable Parallel Implementation of
  Evolutionary Algorithms for Multi-Objective Optimization on GPUs
  http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074

* GNU Parallel was cited in: How Can We Measure the Similarity Between
  Résumés of Selected Candidates for a Job?
  https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job

* GNU Parallel was cited in: Interplay of cell dynamics and epithelial
  tension during morphogenesis of the Drosophila pupal wing
  http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf

* Third-party selling GNU Parallel T-shirts
  http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html

* Joys of gnu parallel
  http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/

* Crop and resize images with bash and ImageMagick
  https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/

* Three Ways to Script Processes in Parallel
  http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/

* What It Looks Like to Process 3.5 Million Books
  http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/

* Bug fixes and man page updates.


20150822

* If $job->skip() is called in {= =} the job will not be run.

* @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
  $_="j" =}' ::: 1 2 3 ::: 4 5 6

* Version of GNU Parallel that uses PostgreSQL as backend
  https://github.com/stephen-fralich/parallel-sql/

* SpeedSeq: ultra-fast personal genome analysis and interpretation
  http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html

* GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep

* Who actually reads the code?
  http://www.fsf.org/blogs/community/who-actually-reads-the-code

* Introduction to GNU Parallel
  http://erictleung.com/2015/08/06/intro-to-gnu-parallel/

* ¿Alguien se lee el código?
  http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html

* ¿Quién se lee el código fuente?
  https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/

* Distribution des traitements avec GNU Parallel
  http://blog.inovia-conseil.fr/?p=226#4

* Эксперимент по проверке, читают ли код открытых проектов
  http://www.opennet.ru/opennews/art.shtml?num=42718

* 多核心主機搭配 GNU parallel
  http://blog.zeroplex.tw/2015/08/gnu-parallel.html

* Bug fixes and man page updates.


20150722

* If a record fits in a block, --block only reads upto the size of
  --block. If not: --block reads a full --block more.

* Due to widely spread distributions still using --tollef even after a
  year of being retired following a year of being obsolete, --tollef
  now gives an error unless used with --gnu.

* --nice now uses a perl wrapper instead of the nice command.

* Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
  after release.

* A parser for GNU Parallel --joblog files:
  https://github.com/harryjubb/joblog

* GNU Parallel was cited in: Dynamical formation & scattering of
  hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
  collisions http://arxiv.org/pdf/1507.03593.pdf

* GNU Parallel was cited in: A Fast Compiler for NetKAT
  http://arxiv.org/pdf/1506.06378.pdf

* GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
  Layers
  http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf

* GNU Parallel was used in: Somatic mutation calling from the matched
  tumor-normal exome-sequencing
  http://fafner.meb.ki.se/biostatwiki/somac/

* Parallel Processing from the Command Line
  https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html

* Using GNU Parallel to speed up network operations
  http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html

* Crawl faster with "parallel" - but how fast?
  http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html

* Simultaneously benchmark many URLs with ApacheBench and GNU parallel
  https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/

* Bug fixes and man page updates.


20150622

* --halt has been rewritten completely. You can now combine
  percentages with success or fail. See the man page.

* Exit values 102..254 have been removed. 101 means more than 100 jobs
  failed.

* Killing through --timeout, --memfree, or --halt is now done as a
  process group.

* --termseq determines which signals are sent when a job is killed.

* An empty argument would previously cause no string to be
  inserted. This is now changed to '' being inserted, thus prepending
  a space to the output of: parallel echo {} b ::: ''

* $PARALLEL_ENV can now be set to an environment prepending the
  command. Used in env_parallel as mentioned in the manpage.

* --retry-failed will retry all failed jobs in a joblog. It will
  ignore any command given.

* --ssh and $PARALLEL_SSH can be used to set the command used for
  ssh. The command is assumed to behave the same way as ssh.

* --fifo now works in csh, too.

* Q(...) can be used in {= =} to shell quote a string.

* GNU Parallel was cited in: DockBench: An Integrated Informatic
  Platform Bridging the Gap between the Robust Validation of Docking
  Protocols and Virtual Screening Simulations
  http://www.mdpi.com/1420-3049/20/6/9977

* GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
  You Think
  http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf

* GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
  scattering and resonance calculations
  http://arxiv.org/pdf/1505.07691.pdf

* GNU Parallel was cited in: A quantitative assessment of the Hadoop
  framework for analyzing massively parallel DNA sequencing data
  http://link.springer.com/article/10.1186/s13742-015-0058-5

* GNU Parallel was cited in: A composite genome approach to identify
  phylogenetically informative data from next-generation sequencing
  http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf

* GNU Parallel is used in: taxator-tk
  http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/

* GNU Parallel is used in: https://github.com/d2207197/local-mapreduce

* GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news

* GNU Parallel is used in: A Fingerprint Identification System
  https://curve.carleton.ca/system/files/theses/28733.pdf

* Job ad asking for GNU Parallel experience:
  http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/

* Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html

* Bug fixes and man page updates.


20150522

* Security: The security issue for --sshlogin + --fifo/--cat has been
  fixed. Thereby all issues with
  http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
  have been fixed.

* Security: After further security analysis the issue fixed in
  20150422 also fixed the problem for --tmux.

* GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
  coordinated transcriptional regulation in gene expression
  time-course data
  http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf

* GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
  Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
  Metagenomics and RNA-seq
  http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf

* GNU Parallel was cited in: Sequencing the cap-snatching repertoire
  of H1N1 influenza provides insight into the mechanism of viral
  transcription initiation
  http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf

* GNU Parallel was cited in: Genome assembly using Nanopore-guided
  long and error-free DNA reads
  http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf

* GNU Parallel was used (unfortunately with wrong citation) in:
  Comparing the CarbonTracker and TM5-4DVar data assimilation systems
  for CO2 surface flux inversions
  http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html

* GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
  https://bitbucket.org/srp33/gsoa

* A Quick and Neat :) Orchestrator using GNU Parallel
  http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/

* Execute commands on multiple computers using GNU Parallel (setting
  up a cluster on the cheap)
  https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/

* Functions and GNU parallel for effective cluster load management
  http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html

* Use parallel processing to save time importing databases
  http://drupalsun.com/node/41854

* Run multiple ssh commands in parallel with GNU Parallel
  http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html

* Importing huge databases faster
  https://www.lullabot.com/blog/article/importing-huge-databases-faster

* Parallel? Gnu parallel! https://debian.pro/1834

* Bug fixes and man page updates.


20150422

New in this release:

* Security fix. An attacker on the local system could make you
  overwrite one of your own files with a single byte. The problem
  exist when you use --compress or --tmux or --pipe or --cat or
  --fifo. The attacker must figure out the randomly chosen file name
  and create a symlink within a time window of 15 ms.

* --shuf will generate all jobs, and shuffle them before running
  them. This is useful to get a quick preview of the results before
  running the full batch.

* GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303

* GNU Parallel was cited in: Scaling Machine Learning for Target
  Prediction in Drug Discovery using Apache Spark
  https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf

* GNU Parallel was cited in: Bayesian inference of protein structure
  from chemical shift data https://peerj.com/articles/861/

* GNU Parallel was cited in: Toward Enhanced Metadata Quality of
  Large-Scale Digital Libraries: Estimating Volume Time Range
  https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf

* GNU Parallel was cited in: Experimental study on the Wind Farm
  Substation Cable Installation Problem
  http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf

* GNU Parallel was used in: https://github.com/KAPPS-/landsat-gifworks

* GNU Parallel was used in: https://github.com/exascience/elprep

* GNU Parallel was used in:
  http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/

* GNU Parallel was used in:
  http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm

* GNU Parallel was used in: Rapid haploid SNP calling
  https://github.com/tseemann/snippy

* Pictures and Metadata
  http://www.ozzy.no/2015/02/05/pictures-and-metadata/

* Task automation with bash and parallel
  https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/

* How To: Speed Up File Transfers in Linux using RSync with GNU
  Parallel
  http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html

* Mirroring a Git Repository
  https://avacariu.me/articles/mirroring-a-git-repository.html

* Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
  https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/

* 你见过的最牛逼的命令行程序是什么？
  http://www.zhihu.com/question/29257300

* Bug fixes and man page updates.


20150322

New in this release:

* --number-of-cores respects 'taskset' on GNU/Linux.

* --joblog --pipe gives the data send and received in the log.

* GNU Parallel was tested to support 100 GB sized records in --pipe. A
  few bugs was fixed to support >2 GB records. It works, but is rather
  slow.

* GNU Parallel was cited in: RIG: Recalibration and Interrelation of
  genomic sequence data with the GATK
  http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html

* GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
  Improving metagenomic analysis with high performance classification
  and wide taxonomic attachment
  http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&

* GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
  shaped by declining effective population size
  http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf

* GNU Parallel was cited in: Evidence for DCO+ as a probe of
  ionization in the warm disk surface
  http://arxiv.org/pdf/1503.02659.pdf

* GNU Parallel was cited in: De novo assembly and annotation of the
  Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
  from raw genomic reads and comparative analysis with the yellow
  fever mosquito (Aedes aegypti)
  http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf

* GNU Parallel was cited in: A General Approach to Network
  Configuration Analysis
  http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf

* GNU Parallel was cited in: Scrimer: designing primers from
  transcriptome data
  http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf

* GNU Parallel was cited in: Efficient Retrieval of Key Material for
  Inspecting Potentially Malicious Traffic in the Cloud
  http://sacko.uk/pdf/2015.1.pdf

* GNU Parallel will be presented at Strataconf: Poor Man's Parallel
  Pipelines
  http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031

* GNU Parallel was used in:
  https://github.com/alexbyrnes/FCC-Political-Ads_The-Code

* GNU Parallel was used in: https://github.com/martymac/fpart

* GNU Parallel was used in:
  https://github.com/hoytak/diabetic-retinopathy-code

* GNU Parallel was used in:
  https://github.com/mehmattski/HybSeqPipeline

* GNU Parallel was used in:
  http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm

* Using GNU Parallel on a Raspberry Pi cluster:
  http://www.dcglug.org.uk/cluster-progress/

* An introduction to vector tiling and map reduce in postgis:
  http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/

* Running scripts in parallel with GNU Parallel:
  http://code.jasonbhill.com/2015/03/

* Mahout: Parallelising the creation of DecisionTrees:
  http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/

* High-Performance Scientific Computing: Running serial jobs in
  parallel
  https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf

* Parallel cardinality on your laptop
  https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/

* Experiments about a better locate using grep
  http://a3nm.net/blog/better_locate.html

* Homework with GNU Parallel:
  https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html

* Parallel - Jobs in Skripten parallelisieren:
  https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612

* GNU Parallel, czyli 100% użycia procesora
  http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html

* Bug fixes and man page updates.


20150222

* --tmux has gotten a major overhaul.

* GNU Parallel was cited in: RaftLib: A C++ Template Library for High
  Performance Stream Parallel Processing
  http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf

* GNU Parallel was cited in: Quantifying properties of hot and dense
  QCD matter through systematic model-to-data comparison
  http://arxiv.org/pdf/1502.00339.pdf

* GNU Parallel was cited in: Towards Collaborative Exploration and
  Analysis of Big Data from Mars: A Noachis Terra Case Study
  http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25

* GNU Parallel was used (unfortunately with wrong citation) in:
  Performance and Scaling Comparison Study of RDBMS and NoSQL
  (MongoDB)
  http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf

* GNU Parallel was used (unfortunately without citation) in: Parallel
  Implementation of Big Data Pre-Processing Algorithms for Sentiment
  Analysis of Social Networking Data
  http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf

* GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
  Ultra-fast personal genome analysis and interpretation
  http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf

* Zip Folders with GNU Parallel
  http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html

* Using GNU Parallel with Freesurfer
  http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html

* GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor

* Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/

* Bug fixes and man page updates.


20150122

* Remote jobs now send stderr (standard error) to stderr (standard
  error) instead of stdout (standard output).

* Remote execution command is now packed using base64 encoded
  bzip2. This means that big environments (app. 100 KB) can be
  transferred. This change makes remote execution alpha quality.

* --semaphoretimeout now takes a negative value. This means give up if
  the semaphore is not gotten within the timeout.

* --halt -1 and -2 now means halt if a job succeeds (so the opposite
  of 1 and 2).

* --no-keep-order will reverse --keep-order.

* Bash's second fix of shellshock caused --env to break again when
  exporting functions. This has been fixed again.

* A semibig refactoring of big functions. All non-trivial functions
  are now less than 100 lines. The refactoring makes this release beta
  quality.

* A description of the design decisions for GNU Parallel can be found
  in 'man parallel_design'.

* A bug fix in replacement strings caused rewrite of the replacement
  function. This makes use of replacement strings alpha quality.

* GNU Parallel was cited in: Improving Energy and Performance with
  Spintronics Caches in Multicore Systems
  http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24

* GNU Parallel was cited in: Parallel post-processing with MPI-Bash
  http://dl.acm.org/citation.cfm?id=2691137

* GNU Parallel was cited in: Distinguishing cause from effect using
  observational data: methods and benchmarks
  http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf

* GNU Parallel was cited in: Data Science at the Command Line
  http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf

* GNU Parallel was cited in: Resolution of Genetic Map Expansion
  Caused by Excess Heterozygosity in Plant Recombinant Inbred
  Populations http://www.g3journal.org/content/4/10/1963.full.pdf

* GNU Parallel was cited in: Bayesian Inference of Protein Structure
  from Chemical Shift Data https://peerj.com/preprints/692v1.pdf

* GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
  in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003

* GNU Parallel was cited in: Computação Verde na Camada de Aplicação
  https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf

* GNU Parallel was cited in: Frameshift alignment: statistics and
  post-genomic applications
  http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html

* GNU Parallel was cited in: Towards Recommender Engineering Tools and
  Experiments for Identifying Recommender Differences
  http://elehack.net/research/thesis/mde-thesis.pdf

* GNU Parallel was cited in: Speaker Environment Classification Using
  Rhythm Metrics in Levantine Arabic Dialect
  http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918

* GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
  http://arxiv.org/pdf/1501.02155.pdf

* GNU Parallel was cited in: Allocation Policy Analysis for Cache
  Coherence Protocols for STT-MRAM-based caches
  http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf

* GNU Parallel was cited in: Using Trusted Platform Module for
  securing virtual environment access in Cloud
  http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf

* GNU Parallel was cited in: Weakly Supervised Learning for
  Compositional Sentiment Recognition
  http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf

* GNU Parallel was cited in: Agility and Performance in Elastic
  Distributed Storage http://dl.acm.org/citation.cfm?id=2668129

* GNU Parallel was used (unfortunately without citation) in: Large
  Scale Author Name Disambiguation in Digital Libraries
  http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf

* GNU Parallel is used in BEDOPS:
  https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf

* Job ad asking for GNU Parallel skills:
  http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs

* GNU Parallel: Open Source For You (OSFY) magazine, October 2013
  edition
  http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html

* Multithreaded Encryption and Compression
  http://www.krazyworks.com/multithreaded-encryption-and-compression/

* GNU Parallel on OSX and Linux
  https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/

* How to build gnu parallel from source on Ubuntu PC?
  http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/

* GNU parallel for openaddr-process-one
  https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/

* From SRA Project to FastQ http://danielecook.com/sra-project-fastq/

* Software Development Tooling
  http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf

* コマンドを並列に実行するGNU parallelがとても便利
  http://bicycle1885.hatenablog.com/entry/2014/08/10/143612

* Bug fixes and man page updates.


20141122

* Remote systems can be divided into hostgroups (e.g. web and db) by
  prepending '@groupname/' to the sshlogin. Multiple groups can be
  given by separating groups with '+'. E.g. @web/www1 @web+db/www2
  @db/mariadb

* Remote execution can be restricted to servers that are part of one
  or more groups by '@groupname' as an sshlogin. Multiple groups can
  be given by separating groups with '+'. E.g. -S @web or -S @db+web

* With --hostgroup you can restrict arguments to certain hostgroups by
  appending '@groupname' to the argument.  Multiple groups can be
  given by separating groups with '+'. E.g. my_web_arg@web
  db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
  developing a prototype for this.

* GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
  Massively Parallel Sequencing Data Analysis using Hadoop
  http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf

* GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
  the Histological Quantification of Whole Slide Images
  http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289

* GNU Parallel was cited in: Exploring a multiprocessor design space
  to analyze the impact of using STT-RAM in the memory hierarchy
  http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf

* Command-Line OCR with Tesseract on Mac OS X
  https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html

* Bug fixes and man page updates.


20141022

* --env was changed to deal with Bash's new way of exporting a function.

* GNU Parallel was cited in: Exclusion of cosmic rays in
  protoplanetary disks. II. Chemical gradients and observational
  signatures http://iopscience.iop.org/0004-637X/794/2/123/article

* GNU Parallel was cited in: Application of Machine Learning to
  Algorithm Selection for TSP
  http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf

* GNU Parallel was cited in: Performance Models for LTE-Advanced
  Random Access
  http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf

* GNU Parallel was used (unfortunately without citation) in: De Novo
  Insertions and Deletions of Predominantly Paternal Origin Are
  Associated with Autism Spectrum Disorder
  http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf

* GNU Parallel was determined 'popular' by Statistical Analysis of
  Popular Open Source Software Projects and Their Communities
  http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf

* GNU Parallel is demonstrated in: Data Science at the Command Line:
  Facing the Future with Time-Tested Tools

* GNU Parallel was covered in a talk at Sydney Perl Mongers group
  http://www.openfusion.net/talks/pwp/#24

* GNU Parallel and how to get started with it
  http://www.jduck.net/blog/2014/09/30/gnu-paralell/

* Behat/Selenium/Parallel
  http://jaffamonkey.com/behat-selenium-parallel/

* Comparing Golang, Scala, Elixir and Ruby for ETL
  http://www.dimroc.com/2014/09/29/etl-language-showdown/

* Assemble a list of which of these hosts are up or down
  http://opsfun.wordpress.com/2014/03/31/gnu-parallel/

* Running commands on many nodes simultaneously
  http://opsfun.wordpress.com/2014/03/31/19/

* Ubuntu 13.04でGNU ParallelをGNUモードで動かす
  http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85

* Bug fixes and man page updates.


20140922

* If the file given as --sshloginfile is changed it will be re-read
  when a job finishes though at most once per second. This makes it
  possible to add and remove hosts while running.

* Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2

* OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/

* GNU Parallel was presented at Balti and Bioinformatics "On-Air"
  http://youtu.be/UtXlr19xTh8?t=2h5m0s

* Pleiades Plus uses GNU Parallel
  https://github.com/ryanfb/pleiades-plus

* Imagemagick and GNU Parallel
  http://deepdish.io/2014/09/15/gnu-parallel/

* GNU Parallel (Sebuah Uji Coba)
  http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/

* GNU Parallel: 并行执行Linux命令
  http://blog.csdn.net/xzz_hust/article/details/39183837


20140822

* GNU Parallel now uses the same shell it was started from as the
  command shell for local jobs. So if GNU Parallel is started from
  tcsh it will use tcsh as its shell even if the login $SHELL is
  different. For remote jobs the login $SHELL will be used.

* The whole current environment in bash can be copied by using a shell
  wrapper function (Search manual for env_parallel).

* --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
  {...} {/..} {/...}. The idea being that '+foo' matches the opposite
  of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
  = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}

* GNU Parallel now deals correctly with the combination
  rsync-3.1.X-client and rsync-2.5.7-server

* GNU Parallel was cited in: A Web Service for Scholarly Big Data
  Information Extraction
  http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf

* Comparison of the speed of different GNU Parallel versions:
  http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html

* GNU Parallel was covered in the webcast 2014-08-20: Data Science at
  the Command Line http://www.oreilly.com/pub/e/3115

* Distributed processing with GNU parallel
  http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel

* A Peek into GNU Parallel
  http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel

* Сборка GNU parallel для CentOS/RHEL
  http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html

* Bug fixes and man page updates.


20140722

* {= perl expression =} can be used as replacement string. The
  expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
  the string. This makes replacement strings extremely flexible.

* Positional perl expressions (similar to {2}) are given as {=2 perl
  expression=} where 2 is the position.

* One small backwards incompatibility: {1}_{2} will replace {2} with
  the empty string if there is only one argument. Previously {2} would
  have been left untouched.

* Replacement strings can be defined using --rpl. E.g. parallel --rpl
  '{.gz} s/\.gz$//' echo {.gz} ::: *.gz

* The parenthesis around {= perl expression =} can be changed with
  --parens.

* --tmux will direct the output to a tmux session instead of
  files. Each running jobs will be in its own window.

* --halt 10% will stop spawning new jobs if 10% failed so far.

* GNU Parallel was cited in: bammds: A tool for assessing the ancestry
  of low depth whole genome data using multidimensional scaling (MDS)
  http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract

* GNU Parallel was cited in: Molecular ferroelectric contributions to
  anomalous hysteresis in hybrid perovskite solar cells
  http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf

* GNU Parallel was cited in: Energy Sorghum-a genetic model for the
  design of C4 grass bioenergy crops
  http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short

* GNU Parallel was cited in: Web-scale Content Reuse Detection
  www.isi.edu/~johnh/PAPERS/Ardi14a.pdf

* Tell your friends to sign up for the Webcast at 2014-08-20 covering
  GNU Parallel: Data Science at the Command Line
  http://www.oreilly.com/pub/e/3115

* GNU Parallel all the things!
  http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/

* Shell command composition and dispatch
  http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html

* Parallelising plink (or anything else) the easy way
  http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/

* Easy and cheap cluster building on AWS
  https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html

* Paralelizace běžných činností v konzoli pomocí GNU Parallel
  http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel

* [原] Ubuntu 下使用 parallel 命令的注意事项
  http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html

* 简单的并行, 可使用GNU parallel
  http://jerkwin.github.io/2014/06/10/GNU-parallel/

* Bug fixes and man page updates.


20140622

* --shebang and --shebang-wrap now works on FreeBSD.

* --pipepart works with --header, --regexp, --cat and --fifo.

* ./configure --disable-documentation will not build documentation.

* {%} works as job slot.

* GNU Parallel was cited in: Energy Efficient, High-speed
  Communication in WSNs
  https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf

* GNU Parallel was cited in: Ferroelectric contributions to anomalous
  hysteresis in hybrid perovskite solar cells
  http://arxiv.org/pdf/1405.5810.pdf

* Processes Paralleling to Speed up Computing and Tasks Execution in
  Linux
  http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux

* Moving / Copying lots of s3 files quickly using gnu parallel
  http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/

* Speeding up grep log queries with GNU Parallel
  http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/

* Ubuntu - Gnu parallel - It's awesome
  http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html

* Export quicklooks with vector overlay using TuiView
  http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/

* GNU Parallel指南 http://my.oschina.net/enyo/blog/271612

* GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301

* Bug fixes and man page updates.


20140522

* Use --semaphoretimeout to ignore the semaphore lock after a while.

* {%} introduced as job slot replacement string. It has known bugs.

* --slotreplace changes slot replacement string.

* GNU Parallel officially in Solaris 11.2beta
  https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to

* GNU Parallel was cited in: A Comparison of Antenna Placement
  Algorithms http://abhinavjauhri.com/publications/eap.pdf

* Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
  https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing

* BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite

* Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md

* Convert FLAC to MP3 with GNU parallel
  http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/

* JD Edwards Business Function Documentation
  http://www.azertech.net/content/jd-edwards-business-function-documentation

* Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/

* How I start a bioinformatics project
  http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/

* No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html

* Bug fixes and man page updates.


20140422

* --pipepart is a highly efficient alternative to --pipe if the input
  is a real file and not a pipe.

* If using --cat or --fifo with --pipe the {} in the command will be
  replaced with the name of a physical file and a fifo respectively
  containing the block from --pipe. Useful for commands that cannot
  read from standard input (stdin).

* --controlmaster has gotten an overhaul and is no longer
  experimental.

* --env is now copied when determining CPUs on remote system. Useful
  for copying $PATH if parallel is not in the normal path.

* --results now chops the argument if the argument is longer than the
  allowed path length.

* Build now survives if pod2* are not installed.

* The git repository now contains tags of releases.

* GNU Parallel was cited in: Proactive System for Digital Forensic
  Investigation
  http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf

* GNU Parallel was cited in: Beyond MAP estimation with the
  track-oriented multiple hypothesis tracker
  http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651

* GNU Parallel was cited in: Prokka: rapid prokaryotic genome
  annotation
  http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short

* GNU Parallel was used (unfortunately with improper citation) in:
  Perspectives in magnetic resonance: NMR in the post-FFT era
  http://www.sciencedirect.com/science/article/pii/S1090780713003054

* GNU Parallel is used in https://github.com/cc2qe/speedseq

* Batch XML validation at the command line.
  http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html

* freebayes-parallel uses GNU Parallel
  https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281

* Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2

* Speeding Up Grep Log Queries with GNU Parallel
  http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/

* How to run tbss_2_reg in parallel
  http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html

* GNU parallel example: blastn https://asciinema.org/a/8775

* Iterative DNS Brute Forcing
  http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/

* Ejecutando comandos en paralelo
  http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/

* Ejecutando en paralelo en bash (ejemplo con rsync)
  http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html

* Bug fixes and man page updates.


20140322

* Offical package for Alpine Linux now exists:
  http://alpinelinux.org/apk/main/x86/parallel

* GNU Parallel was cited in: Estimating uncertainties in statistics
  computed from direct numerical simulation
  http://dx.doi.org/10.1063/1.4866813

* GNU Parallel was cited in: Vehicle routing problems with time
  windows and multiple service workers: a systematic comparison
  between ACO and GRASP
  http://link.springer.com/article/10.1007/s10100-014-0341-z

* GNU Parallel, quick and easy
  http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/

* Using Multiple CPU Cores With Command Line Tools
  http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/

* Batch convert mp3 CBR to VBR
  http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/

* Running Behat in parallel with Selenium grid
  http://zalas.eu/running-behat-in-parallel-with-selenium-grid/

* Git-Mirror per cronjob aktuell halten
  https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/

* Пишем многопоточный скрипт на bash
  http://dafter.ru/duf/howto/130.html

* 如何利用多核CPU来加速你的Linux命令
  http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html

* Bug fixes and man page updates.


20140222

* --tollef has been retired.

* --compress has be redesigned due to bugs.

* Format of --eta and --joblog has changed slightly.

* GNU Parallel was cited in: Speaker Verification and Keyword Spotting
  Systems for Forensic Applications
  http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf

* GNU Parallel was cited in: Scaleable Code Clone Detection
  http://scg.unibe.ch/archive/phd/schwarz-phd.pdf

* GNU Parallel was cited in: Clone Detection that scales
  http://scg.unibe.ch/archive/masters/Vogt14a.pdf

* GNU Parallel was cited in: Scalable Positional Analysis for Studying
  Evolution of Nodes in Networks
  http://arxiv-web3.library.cornell.edu/pdf/1402.3797

* GNU Parallel was cited in: Aggregate Characterization of User
  Behavior in Twitter and Analysis of the Retweet Graph
  http://arxiv.org/pdf/1402.2671v1

* GNU Parallel was used (unfortunately without citation) in: Causal
  Network Models for Predicting Compound Targets and Driving Pathways
  in Cancer
  http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full

* GNU Parallel was used (unfortunately without citation) in:
  Performance and Energy Efficiency of Common Compression /
  Decompression Utilities
  http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf

* GNU Parallel was used (unfortunately without citation) in: SpringFS:
  Bridging Agility and Performance in Elastic Distributed Storage
  http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf

* GNU Parallel was recommended (without citation) in: Redesigning the
  Specificity of Protein-DNA Interactions with Rosetta
  http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17

* GNU Parallel is co-distributed with RepeatExplorer
  http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt

* Convert MP3 to a scrolling spectrum waterfall plot video
  http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html

* PHP wrapper class for the GNU Parallel tool
  https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master

* Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify

* Copias de archivos con rsync y parallel
  http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel

* Single-Thread-Programme auf Multicore-Rechnern parallelisieren
  http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren

* Распараллеливаем процессы для ускорения вычислений и выполнения
  заданий в Linux http://savepearlharbor.com/?p=210480

* Bug fixes and man page updates.


20140122

* GNU Parallel was cited in: On the likelihood of multiple bit upsets
  in logic circuits
  http://arxiv-web3.library.cornell.edu/pdf/1401.1003

* HaploClique uses GNU Parallel
  https://github.com/armintoepfer/haploclique

* Scraping NSScreencast
  https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/

* 30 Cool Open Source Software I Discovered in 2013
  http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/

* [Unix] 13. The power of doing things in Parallel
  http://leetaey.tistory.com/384

* Parallel the execution of a job that read from stdin
  http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin

* Mon Make à moi (6:38-11:50)
  http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html

* Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
  effizienter in der Shell arbeiten
  https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/

* Summary of GNU Parallel tutorial
  http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html

* Bug fixes and man page updates.


20131222

* GNU Parallel now has a motto: For people who live life in the
  parallel lane.

* Detect if the buffer dir $TMPDIR runs out of space. This changes a
  central piece of code, making this release alpha quality.

* --keep-order --(n)onall will sort according to the sshlogin.

* Detect the number of CPUs on DEC Tru64.

* GNU sql: --list-tables for sqlite3.

* GNU Parallel was cited in: Variational Message-Passing: Extension to
  Continuous Variables and Applications in Multi-Target Tracking
  http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf

* GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
  Related Genomes
  https://www.duo.uio.no/handle/10852/37431

* GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
  sediment samples
  http://repositorio.ul.pt/handle/10451/9436

* GNU Parallel was cited in: Diacritization, automatic segmentation
  and labeling for Levantine Arabic speech
  http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556

* GNU Parallel was cited in: Investigation of emotion classification
  using speech rhythm metrics
  http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591

* GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
  and Non-Native Speaking Styles
  http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf

* GNU Parallel was cited in: Evolutionary optimization of wetlands
  design
  http://dl.acm.org/citation.cfm?id=2480400

* GNU Parallel was cited (unfortunately with wrong citation) in:
  RDBMS vs NoSQL: Performance and Scaling Comparison
  http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf

* GNU Parallel was used (without proper citation) in: Comprehensive
  Analysis Pipeline for Discovery of Human Genetic Variation
  http://www.google.com/patents/US20130311106

* Encrypt and decrypt in parallel with GPG
  http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/

* Using GNU Parallel to create a SVM classifier 
  http://ivanyu.me/blog/2013/12/01/parallel/

* Parallel xz compression
  http://anthon.home.xs4all.nl/rants/2013/parallel_xz/

* Got CPUs to burn? Put 'em to work with GNU parallel
  http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html

* Parallel rsync
  http://pastebin.com/JmnB9ffq

* Gnu Parallel for fun and profit
  https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3

* Parallelization of Exploitation
  http://rantsideasstuff.com/parallelization-of-exploitation/

* Running assemblies in parallel
  https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html

* Procesando la contabilidad del PP
  http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html

* Mon make à moi (French)
  http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy

* Bug fixes and man page updates.


20131122

* A citation notice is printed on stderr only if stderr is a terminal,
  the user has not specified --no-notice and the user has not run
  --bibtex once. This makes the release alpha quality.

* --compress will compress temporary files. If the output is big and
  very compressible this will take up less disk space in $TMPDIR and
  possibly be faster due to less disk I/O.

* --compress-program comtrols which program to use for compressing
  temporary files.

* --bar show progress as a progress bar compatible with zenity.

* --resume can now be used with --result: Jobs already run will be
  skipped.

* --transfer and --basefile support paths relative to the --workdir by
  inserting /./ into the path. 

* GNU Parallel was cited in: fastphylo: Fast tools for phylogenetics
  http://www.biomedcentral.com/1471-2105/14/334/abstract

* Using GNU parallel
  http://davetang.org/muse/2013/11/18/using-gnu-parallel/

* Techlux - GNU - Parallel (German)
  https://techlux.de/blog/2013/11/07/gnu-parallel/

* awk, sed, bzip2, grep, wc на всех ядрах
  http://vk.com/page-30666517_45528467

* 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
  http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc

* GNU Parallel (Japanese)
  http://jarp.does.notwork.org/diary/201311b.html#20131117

* Bug fixes and man page updates.


20131022

* --transfer files with /./ in the path will copy the files relative
  to the --workdir.

* The maximal command length is now cached in a file halfing the
  startup time.

* GNU Parallel was cited in: Investigating speaker gender using rhythm
  metrics in Arabic dialects
  http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389

* GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
  lastensuojelun asiakaskertomuksista
  https://tampub.uta.fi/handle/10024/84978

* Some Additional Useful Bioinformatics Software
  http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html

* GNU Parallel Example Screen Cast (bil to Geotiff conversion)
  http://www.youtube.com/watch?v=PpF27eC7Mys

* Using GNU Parallel to roll-your-own Map Reduce!
  http://www.rankfocus.com/hello-world/

* Use multiple CPU Cores with your Linux commands
  http://www.rankfocus.com/use-cpu-cores-linux-commands/

* Using GNU Parallel at HPC @ Uni.lu
  https://hpc.uni.lu/users/use_cases/

* Scaling up with parallelization
  https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf

* How to teach yourself to be a technical tester
  http://infiniteundo.com/post/62421363463/qa-toc

* Faster Rasters For All
  http://2013.foss4g.org/conf/programme/presentations/52/

* Optimizing translated file downloads
  http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/

* EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
  http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/

* Best Practices for Amazon EMR
  http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf

* Computing checksums for backup
  https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg

* Un exemplu de utilizare a programului GNU parallel
  http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html

* 平行化你的工作
  http://www.slideshare.net/drakeguan/part1-23705978

* なんか気持ちよかです Gnu Parallel
  http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel

* Bug fixes and man page updates.


20130922

* PDF-files of documentation is now included.

* Cloning at warp speed 100 VMs in 1 minute using one command line
  http://www.beebotech.com.au/tag/command-line/

* Calcul Quebec's introduction to GNU Parallel
  https://wiki.calculquebec.ca/w/GNU_parallel

* Brincando com o GNU parallel
  http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/

* GNU Parallelで並列処理を行う 
  http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b

* Bug fixes and man page updates.


20130822

* A tutorial showing much of GNU Parallel's functionality. Spend an
  hour walking through the tutorial. Your commandline will love you
  for it. man parallel_tutorial

* --line-buffer will buffer output on line basis. --group keeps the
  output together for a whole job. --ungroup allows output to mixup
  with half a line coming from one job and half a line coming from
  another job. --line-buffer fits between these two; it prints a full
  line, but will allow for mixing lines of different jobs.

* --record-env records all variables and functions set. Useful to
  record the normal environment before using --env _.

* --env _ exports all functions and variables to the remote server
  except for the ones recorded.

* New signing key. Due to recommendations from NIST
  http://www.keylength.com/en/4/ the signing key was changed from
  1024D/ID:FFFFFFF1 to 9888R/ID:88888888.

* Agalma: an automated phylogenomics workflow
  http://arxiv.org/pdf/1307.6432

* Job ad asking for GNU Parallel expertise
  http://seattle.craigslist.org/est/sof/4006079352.html

* Transient Beowulf Clustering with GNU Parallel and SSHfs
  http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/

* Aligning to unique regions
  http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/

* Top 10 scripting tricks for basic bioinformatics
  http://students.washington.edu/bowmanjs/wordpress/?p=873

* Using GNU Parallel to speed up and simplify data analyzes
  http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/

* Compression of files in parallel using GNU parallel
  http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html

* Using GNU Parallel with Amazon
  media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf

* Some useful comments on GNU Parallel
  https://news.ycombinator.com/item?id=6209767

* Using GNU Parallel to count reads mapping to genes for multiple BAMs
  http://drduanehassane.com/blog/sequencing-resources

* TimeMachineっぽいバックアップスクリプト
  http://rio.tc/2013/07/timemachine-1.html

* GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
  http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab

* Bug fixes and man page updates.


20130722

* --round-robin with --pipe will write all blocks to already running
  jobs.

* --env can now transfer Bash function for remote execution. That is
  pretty cool!

* GNU Parallel was used (unfortunately with improper citation) in:
  Understanding the Impact of E-Commerce Software on the Adoption of
  Structured Data on the Web
  http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1

* GNU Parallel was used (unfortunately with improper citation) in:
  CWI at TREC 2012, KBA track and Session Track
  http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf

* Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
  Interactions through Optimal Wall Shaping.
  http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653

* Using GNU parallel to convert images.
  http://www.brunokim.com.br/blog/?p=18

* A quick way to parallelize.
  http://timotheepoisot.fr/2013/07/08/parallel/

* GNU Parallel 20130522 ('Rana Plaza') 发布，并行作业执行.
  http://www.open-open.com/news/view/371301

* Quite a few bug fixes and man page updates.


20130622

* --xapply now recycles arguments if an input source has more
  arguments than others.

* The sleep time between jobs is now both increased and decreased
  exponentially.

* 10 seconds installation check the signature using GnuPG if GnuPG is
  installed.

* Developer job asking for GNU Parallel expertise.
  http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central

* A small utility program to run youtube-dl in parallel.
  https://github.com/dlh/youtube-dl-parallel

* Parallelizing Freesurfer:
  http://blog.cogneurostats.com/?p=148

* Bug fixes and man page updates.


20130522

* --ctrlc is now default if --pipe is not used; thus making it
  possible to kill remotely started jobs simply by pressing Ctrl-C.

* --timeout 200% now means kill jobs that take more than twice the
  time of the median run time of a job.

* Jobs are now distributed round robin when having mulitiple
  --sshlogin instead of filling up one --sshlogin at a time.

* niceload: darwin version of --io --mem --swap. Thanks to Anders F
  Björklund.

* Bug fixes and man page updates.


20130422

* 10 seconds installation: wget -O - pi.dk/3 | sh

* HPUX CPU/core detection. Thanks to Javier Tarradas.

* CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.

* --ctrlc will send SIGINT to tasks running on remote computers and
  thus killing them.

* --load now uses 'ps' to see immediately see the number of running
  processes instead of 'uptime' thus making --load react much faster.

* Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
  bugs. Some of these required quite extensive changes making this
  release beta quality.

*  --retries works with --onall.

* The new --load computation now works on FreeBSD 7.

* --nice works under tcsh.

* GNU Parallel is officially supported in NetBSD.
  http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html

* GNU Parallel is accepted for openSUSE.
  http://software.opensuse.org/package/gnu_parallel

* GNU Parallel can be installed under Microsoft Windows (CygWin).
  http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx

* Excuses for not installing GNU Parallel.
  http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html

* Job advert that requires GNU Parallel competence.
  http://versium.com/about/careers/

* Parallelizing Batch Jobs for Fun and Profit.
  http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs

* Processing Transcription Start Sites(TSS) for the entire Mouse genome.
  http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/

* GNU parallel is used throughout Scrimer.
  http://scrimer.readthedocs.org/en/latest/

* GNU Parallel helped making public documents searchable.
  http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html

* Identifying big movie files (German).
  http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/

* Bug fixes and man page updates.


20130222

* --resume works with --pipe.

* --resume-failed will go through --joblog, redo the failed jobs and
  then continue like --resume.

* Negative positional arguments count from the end: {-1} means the
  last argument, {-2} the second to last.

* NetBSD CPU detection.

* --blocksize increases exponentially if it smaller than a full
  record.

* Processing n-line records (--pipe -L n) is now much faster.

* --tollef is obsoleted after discussion on the mailing list.

* GNU Parallel is the highest rated tool on:
  http://www.biostars.org/show/tools/?sort=votes&since=all%20time

* GNU Parallel was loved during FSFE's #ilovefs campaign.
  http://fsfe.org/news/2013/news-20130212-01.en.html

* Using GNU Parallel with s3cmd (Japanese).
  http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html

* Intro to GNU Parallel (Chinese).
  http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/

* Bug fixes and man page updates.


20130122

* --sshdelay Delay starting next ssh by secs seconds. GNU parallel
  will pause secs seconds after starting each ssh. secs can be less
  than 1 seconds.

* Official OpenBSD port:
  http://ftp.openbsd.org/ports/sysutils/parallel/

* Official DragonFlyBSD package:
  http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/

* Post about niceload in Hungarian:
  http://commandline.blog.hu/2013/01/02/niceload

* 自炊スキャンデータをKobo Gloに最適化
  http://interstadial.wordpress.com/2013/01/20/

* GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
  http://oshiire.to/archives/1686

* Bug fixes and man page updates.


20121222

* --shebang-wrap makes is possible to parallelize scripts by putting
  parallel in the shebang line (the first #! line in scripts).

* --delay puts in a delay after starting each job. Useful to avoid
  raceconditions and thundering herd problems.

* --results now uses / as separator instead of TAB and thus creates
  subdirs. Thanks to Drew Frank.

* parallel: OpenBSD CPU detection. Thanks to Michał Markowski.

* niceload --sensor allows for negative numbers to signify a lower
  number means the limit is lower.

* niceload --prg suspend a named program that is already running.

* niceload multiple --pid suspend process ids that are already running.

* Convertir des images avec find et imagemagick
  http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html

* Bug fixes and man page updates.


20121122

* niceload --sensor makes it possible to use a program to control if a
  program should be suspended.

* GNU Parallel was part of the justification for Nordic Free Software
  Award 2012
  https://fsfe.org/news/2012/news-20121112-01.html

* Dateien schneller packen und konvertieren mit GNU parallel
  http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel

* Processing images from Lunar Reconnaissance Orbiter Narrow Angle
  Camera http://lunokhod.org/?p=774

* GNU Parallel is used in types2: Type and Hapax Accumulation Curves
  http://www.cs.helsinki.fi/u/josuomel/types2/

* GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
  PCA-based system for Dictionary Learning and Encoding for Robust
  Speaker Recognition
  http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
  http://www.cse.iitm.ac.in/~mrsri/ppca.pdf

* Mapreduce avec parallel, cat et une redirection
  http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection

* GNU Parallel for Large Batches of Small Jobs
  https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf

* GNU Parallel used in black belt tip (8:50-10:12)
  https://aws.amazon.com/apac/awspodcast/episode20/

* Bug fixes and man page updates.


20121022

* --results structures output files so they can be imported using
  Pandas (http://pandas.pydata.org/). Useful when doing simulations to
  select output from some arguments.

* Use --env to transfer environment variables through ssh to remote
  machines.

* GNU Parallel is accepted for Ubuntu Quantal.
  http://packages.ubuntu.com/quantal/parallel

* GNU Parallel was requested for OpenSUSE (go vote!)
  https://features.opensuse.org/314461

* Kneth's Korner: Map/Reduce and GNU Parallel
  http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html

* Blog post in Japanese by Siguniang.
  https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
  (Siguniang mentions the logo is called 'The Cafe Wall Illusion')
  http://www.michaelbach.de/ot/ang_cafewall/index.html

* GNU Parallel, where have you been all my life?
  http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html

* Reference-free ddRADseq analysis tools uses GNU Parallel.
  https://github.com/brantp/rtd#readme

* When bash just isn’t quick enough.
  https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/

* Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
  http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html

* GNU Parallel Notes.
  http://xed.ch/help/parallel.html

* Bug fixes and man page updates.


20120822

* Due to a bugfix the main flow has changed. Making this release beta
  quality.

* Parallel Proxy Scraper & Checker Tool 
  https://www.youtube.com/watch?v=iXCeR_XsP6o

* Bug fixes and man page updates.


20120722

* GNU Parallel was presented at Chiang Mai Bar Camp
  http://barcampchiangmai.org/
  See write up here:
  http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/

* I don't always max out all my CPUs, but when I do, I do it with GNU
  Parallel.
  http://memegenerator.net/instance/22638454

* Bug fixes and man page updates.


20120622

* '-L n --pipe' will use records of n lines. This is useful when
  processing data that have fixed records with a fixed number of
  lines (e.g. fastq).

* --filter-hosts will remove down hosts. For each remote host: check
  that login through ssh works. If not: do not use this host.
  Currently you can not put --filter-hosts in a profile, $PARALLEL,
  /etc/parallel/config or similar. This is because GNU Parallel uses
  GNU Parallel to compute this, so you will get an infinite loop. This
  will likely be fixed in a later release.

* --pipe now uses fork() instead of busy wait. The performance should
  be better on computers with >10 cores while remaining the same on
  computers with few cores.

* GNU Parallel will be represented at Chiang Mai Bar Camp.
  http://barcampchiangmai.org/

* Indexing Big Data on Amazon AWS: The Screencast
  (Check out his T-shirt at 18:40-21:00).
  http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/

* biotoolbox uses GNU Parallel.
  https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper

* Spiceweasel uses GNU Parallel.
  https://github.com/mattray/spiceweasel

* GNU Parallel part of The Administrators Challenge.
  http://challenge.twistedrack.com/questions/qs3.php

* Finding Oldest Firefox Code using GNU Parallel.
  http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/

* Bug fixes (quite a few for remote job running) and man page updates.


20120522

* Timings in --joblog now with milliseconds.

* Thesis using GNU Parallel (correctly cited; hooray!).
  http://scholarworks.sjsu.edu/etd_projects/222/

* Package for AIX.
  http://www.perzl.org/aix/index.php?n=Main.Parallel

* Prokka uses GNU Parallel.
  http://bioinformatics.net.au/prokka-manual.html

* GNU Parallel was presented at MUUG.
  http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/

* Blog post: Manipulating many or large files with GNU parallel.
  http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html

* Blog post: Running commands in parallel using bash.
  http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html  

* Blog post in Hungarian.
  http://commandline.blog.hu/2012/05/03/gnu_parallel

* Popularity of GNU Parallel in Debian explodes.
  http://qa.debian.org/popcon-graph.php?packages=parallel

* Bug fixes and man page updates.


20120422

* A race condition bug caused restructuring of a central piece of the
  code. Thus this release of GNU Parallel should be considered beta
  quality.

* sql --dbsize will now list sizes of all databases if given no
  database.

* GNU Parallel is now in Debian Unstable.
  apt-get install parallel

* Article: Computational and experimental analyses of
  retrotransposon-associated minisatellite DNAs in the soybean genome.
  http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf

* Blog post: GNU parallel - the best thing since sliced bread.
  https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/

* Blog post: GNU Parallel makes everything faster.
  http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html

* Blog post (German): Howto: GNU parallel.
  http://d24m.de/2012/04/05/howto-gnu-parallel/

* Blog post: Running in Parallel
  http://interactivity.ifactory.com/2012/04/running-in-parallel/

* 20000 watched the first intro video.
  http://pi.dk/1

* The first 5 have received their GNU Parallel merchandise
  https://www.gnu.org/software/parallel/merchandise.html

* Bug fixes and man page updates.


20120322

* Parallel Process Database Dumps.
  http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html

* Using GNU Parallel to process images from Mars.
  http://lunokhod.org/?p=468

* Using GNU Parallel with bzgrep.
  http://filip.rembialkowski.net/did-you-know-gnu-parallel/

* Bug fixes and man page updates.


20120222

* --workdir . will use the current working dir. If the current working
  dir is beneath your home dir, the value . is treated as the relative
  path to your home dir. This means that if your home dir is different
  on remote computers (e.g. if your login is different) the relative
  path will still be relative to your home dir.

* A texinfo file is now generated from the POD file using pod2texi.

* The bioinformatics article "Fast large-scale clustering of protein
  structures using Gauss integrals" mentions GNU Parallel. They forgot
  to add the reference. Please remember --bibtex if you use GNU
  Parallel in an article.
  http://bioinformatics.oxfordjournals.org/content/28/4/510.short

* The first supporter received his merchandise. Did you order yours?
  https://www.gnu.org/software/parallel/merchandise.html

* How to use GNU Parallel with samtools.
  http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html

* How to use GNU Parallel for vacuuming PostgreSQL tables.
  http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/

* Converting e-books with Calibre and GNU Parallel.
  http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/

* Using GNU Parallel for tailing logfiles from multiple servers.
  http://silviud.blogspot.com/2012/02/shell-parallel-processing.html

* Bug fixes and man page updates.


20120122

* --header : uses the first input line as column names and you can
  then use {colname} as a replacement string in the command. This also
  works with multiple :::'s.

* --header <regexp> matches a header as a regular expression and
  repeats the header for each block with --pipe.

* --resume resumes from the last unfinished job. Useful if you stop
  GNU Parallel and restart it later with the same arguments.

* niceload now propagates exit status correctly.

* Show your support for GNU Parallel. For a limited time you can get a
  GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
  https://www.gnu.org/software/parallel/merchandise.html

* Options -g -B -T -U -W -Y are retired as warned 6 months ago.

* GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
  to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128

* Article in IEEE Software on GNU Parallel. Thanks to Diomidis
  Spinellis.  http://www.spinellis.gr/blog/20110911/

* An article on Narwhal which uses GNU Parallel. They forgot to add
  the reference. Please remember --bibtex if you use GNU Parallel in
  an article. 
  http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf

* Blog post on using GNU Parallel to speed up BLAST queries:
  http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html

* Video showing Wake-on-LAN with GNU Parallel.
  https://www.youtube.com/watch?v=0mB-yIyKFLQ

* Using GNU Parallel with Solr.
  http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html

* First job ad including GNU Parallel:
  http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex

* Bug fixes and man page updates.


20111222

* --timeout will now kill grandchildren.

* Interview in Hacker Public Radio.
  http://hackerpublicradio.org/eps.php?id=0860

* Blog post in Chinese.
  http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html

* Bug fixes and man page updates.


20111122

* GNU Parallel package for Fedora.
  https://admin.fedoraproject.org/pkgdb/acls/name/parallel

* Using GNU Parallel with Mozilla cross referencing.
  https://blog.mozilla.com/it/2011/11/15/mxr-improvements/

* Neat flash presentation of GNU Parallel.
  http://prezi.com/0nq74b2elgtx/about-gnu-parallel/

* How to create tar files of dirs in parallel.
  https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/

* Article in Admin Network&Security by Ben Martin.
  http://www.admin-magazine.com/HPC/Articles/GNU-Parallel

* Blog post in Polish.
  http://blog.tiger.com.pl/2011/01/05/gnu-parallel/

* Blog post on using GNU Parallel of Mac OS X.
  http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/

* Blog post in English by researcher.
  http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/

* Blog entry in Chinese.
  http://blog.csdn.net/tossense/article/details/6889026

* Blog entry in Japanese on managing many servers.
  http://hiroakis.com/blog/2011/11/13/gnu-parallel/

* GNU Parallel is now part of ppbs.
  http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html

* How to use GNU Parallel with MCX.
  http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster

* Bug fixes and man page updates.


20111022

* --tag prepends lines with the argument(s). If used with --(n)onall
  the line will be prepended with the sshlogin instead.

* --shellquote does not run the command but quotes it using \'s.
  Useful for making quoted composed commands.

* --profile can now be repeated merging multiple profiles.

* --bibtex now gives the BibTeX entry.
  Thanks to Aleksandr Levchuk for testing.

* Makefile for simple .deb package.
  cd packager/debian; make

* sql: --list-databases lists the databases.

* GNU Parallel officially in Fedora 16
  http://www.spinics.net/lists/fedora-package-announce/msg67130.html

* Blog post on recompression FLAC audio.
  http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html

* The most complex use of ::: I have seen so far.
  http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html

* Example of using GNU Parallel with sudo.
  http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files

* Use wget and gnu parallel to download mp3s at rocket speed.
  http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at

* First CV referring to GNU Parallel.
  http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602

* Cartwright labs usage of GNU Parallel.
  http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck

* Bug fixes and man page updates.


20110822

* --timeout implemented so that slow commands can be killed

* CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.

* Example of a parallel webcrawler in the man page.

* Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
  http://wirtel.be/2011/07/15/rsync_parallel/

* Blog post in Japanese.
  http://dminor11th.blogspot.com/2011/08/gnu-parallel.html

* Blog post about optimizing JPEGs. Thanks to Thomas Jost.
  http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/

* Bug fixes and man page updates.


20110722

* niceload: --hard will suspend a program if a limit is reached - as
  opposed to just slowing the program down.

* niceload: --soft will slow the program down - as opposed to
  suspending the program completely.

* niceload: --run-io will slow down a program if disk io goes above a
  certain limit.

* niceload: --run-load will slow down a program if loadaverage goes
  above a certain limit.

* niceload: --run-mem will slow down a program if free memory goes
  below a certain limit.

* niceload: --run-noswap will slow down a program if the computer is
  swapping.

* niceload: --start-io, --start-load, --start-mem, --start-noswap will
  defer starting a program until the system is below the limit.

* --io, --load, --mem, and --noswap sets both --run-* and --start-*.

* niceload got a major rewrite and is now object oriented.

* GNU Parallel was presented at Nordic Perl Workshop 2011.
  http://conferences.yapceurope.org/npw2011/talk/3416

* Blog post about zcat and GNU Parallel. Thanks to Dr. John.
  http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/

* 2 blog posts in Japanese. Thanks to Negima.
  http://d.hatena.ne.jp/negima1976/20110607/1307412660
  http://d.hatena.ne.jp/negima1976/20110628/1309252494

* Blog post for bioinformatics. Thanks to Chris Miller.
  http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/

* Bug fixes and man page updates.


20110622

* --onall will run all the jobs on all the computers. This is useful
  for systemadinistrators having multiple servers.

* --nonall runs like --onall but reads no arguments from stdin
  (standard input), so is possible to do:
  parallel --nonall -S computer1,computer2 uptime

* Context replace now works with multiple input sources:
  parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c

* --noswap do not start a job on a server that is swapping.

* Article: Parallel processing without Hadoop!
  http://www.solutionhacker.com/parallel-processing-without-hadoop/

* Article in Linux Magazine (Spanish). Thanks to Ben Martin.
  http://www.linux-magazine.es/issue/67/

* First blog post in Korean. Thanks to 민병국.
  http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#

* Blog post in Japanese. Thanks to Naoya Nakazawa.
  http://www.sssg.org/blogs/naoya/archives/2003

* Blog post in English. Thanks to Dagon.
  http://hekate.homeip.net/2011/05/29/

* Bug fixes and man page updates.


20110522

* Multiple ::: can be put on the command line and will be treated
  similar to contents from multiple -a's.

* ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
  refer to inputs from the different input sources.

* --xapply is now needed to get xapply's behaviour of reading one line
  from each of the input sources.

* Multiple input sources will cause all combinations of arguments from
  the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
  a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
  nested loops.

* Implemented {//} for the input line with the basename removed (dirname).

* New video showing the new ::: and :::: input sources.
  http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc

* GNU Parallel now has a logo.
  http://www.gnu.org/software/parallel/logo.png

* Article about GNU SQL in USENIX Magazine ;login: (print)
  http://www.usenix.org/publications/login/2011-04/

* Using GNU Parallel with EC2. Thanks to Kevin Wu.
  http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in

* Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
  http://d.hatena.ne.jp/ichii386/20110426

* Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
  http://www.hollenback.net/index.php/MacportsParallel

* Robert from Echo One discusses using processes instead of threads:
  http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/

* How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
  http://www.kevinstock.org/2011/04/using-the-ri-cluster/

* Short article about using GNU Parallel with lame:
  http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion

* Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
  http://blog.clouder.jp/archives/001140.html

* BBC Research & Development uses GNU Parallel:
  http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml

* Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
  http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/

* Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
  http://derek.chezmarcotte.ca/?p=286

* Bug fixes and man page updates.


20110422

* {#} now works as an alias for $PARALLEL_PID.

* --eta now estimates way more accurately.

* CPU detection code for AIX thanks to Christian Netrwal.

* --joblog contains exitcode.

* Thanks to Ævar Arnfjörð Bjarmason for reading my code.

* GNU Parallel was presented at:
  - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
  - OSAA.dk, Aarhus, 2011-04-12

* Blog entry in Japanese. Thanks to Riywo.
  http://blog.riywo.com/2011/04/19/022802

* Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
  J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel

* First example of using GNU Parallel in Hebrew. Thanks to omry.
  http://nd.gd/jk

* Intro video got past 10000 hits.
  http://www.youtube.com/watch?v=OpaiGYxkSuQ

* Bug fixes and man page updates.


20110322

* --tollef to be switch compatible with Tollef's parallel. This will
  cause -l to mean --load, and the argument separator will be --
  instead of :::

* --gnu will force GNU Parallel to behave like GNU Parallel even if
  --tollef is set.

* Site wide config file: /etc/parallel/config

  This should solve the issue with some packagers renaming GNU
  Parallel to gparallel to avoid the naming conflict.

  By putting --tollef in the site wide config file you can deinstall
  Tollef's parallel and install GNU Parallel instead without any
  change for users or scripts. This is useful for packagers that
  currently rename GNU Parallel or simply do not distribute GNU
  Parallel because the command name conflicts with Tollef's parallel.

* -L 0 -n 0, and -N 0 implemented. They will read one argument,
  but insert 0 arguments on the command line. Useful if you just want
  to run the same command with the same arguments a number of times.

* GNU Parallel is now in Fink. Thanks to Jesse Alama.
  http://pdb.finkproject.org/pdb/package.php/parallel

* Opscode Cookbook for Chef. Thanks to Joshua Timberman.
  https://github.com/opscode/cookbooks/tree/master/gnu_parallel

* Man page examples translated into Japanese. Thanks to Koshigoe.
  http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13

* GNU Parallel will be presented at:
  - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
  - OSAA.dk, Aarhus, 2011-04-12

* Video of presentation from FSCONS 2010-11-07. The presenter was
  _really_ hoarse that day (Something to do with loads of alcohol the
  night before). http://vimeo.com/20838834

* Review with examples in German. Thanks to M. Nieberg.
  http://kenntwas.de/2011/linux/gnu-parallel/

* A review of the --pipe option in German. Thanks to Mathias Huber.
  http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten

* A small example of grepping maillogs. Thanks to François Maillet.
  http://www.francoismaillet.com/blog/?p=399

* Using GNU Parallel instead of xargs. Thanks to James Cuff.
  http://blog.jcuff.net/2011/02/on-train-ride-in.html

* Bug fixes and man page updates.


20110205

* --pipe splits piped data into blocks. Each block is piped to a
  program for processing. The piping and the programs will be run in
  parallel. Useful if the data you want to process is data for a
  program and not arguments.

* --blocksize sets the blocksize in bytes for --pipe. The blocksize is
  approximate. It can deviate as much as the size of one record.
  Default is 1M.

* --recstart sets the string matching the start of a
  record. Default is "".

* --recend sets the string matching the end of a
  record. Default is '\n'. To specify none use --recend "".

  If both --recstart and --recend are set, the end of a record must be
  followed immediately by a start of a record. This is useful if
  either recend or recstart can occur in the middle of a record.

* --remove-rec-sep removes the string matched by --recstart and
  --recend.

* --regexp will make GNU Parallel treat --recstart and --recend as
  regular expressions.

* --output-as-files will put the output of the programs into files and
  instead of giving the output GNU Parallel will output the name of
  these files.

* -N if used with --pipe sets the number of records to read.

* New video showing --pipe at
  http://www.youtube.com/watch?v=1ntxT-47VPA

* GNU Parallel was presented at FOSDEM.

* Article in USENIX Magazine ;login: (print)
  http://www.usenix.org/publications/login/2011-02/

* GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
  https://www.ohloh.net/p/gnu-parallel

* Advanced recursive example. Thanks to Ruarí Ødegaard.
  http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu

* Small example on using GNU Parallel through 0install (German).
  http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/

* Bug fixes and man page updates.


20110122

* --joblog makes a simple log of completed jobs.

* -X now spreads arguments between job slots when reaching last
  argument. Use -j1 to avoid this.

* People on the email list have voted -j+0 to be the new default
  instead of -j9.

* First review in Polish. Thanks to Patryk Krawaczyński.
  http://nfsec.pl/root/2458

* Review in Spanish (in print).
  https://www.linux-magazine.es/issue/67/moreinfo.html

* Review in English. Thanks to Brian Gough.
  http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/

* Review in French. Thanks to Denis Dordoigne.
  http://linuxfr.org/2010/12/29/27715.html

* Review in Spanish.
  http://gufete.net/index.php?entry=entry110116-200022

* Article with advanced recursive example. Thanks to Ruarí Ødegaard
  http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel

* Use case for memcache.
  http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/

* Bug fixes and man page updates.


20101222

* GNU niceload is now part of GNU Parallel. GNU niceload slows down a
  program if the load average is above a certain limit.

* Implemented --tmpdir to buffer standard output and standard error in
  a different place.

* Implemented --load to wait until the load is below a limit before
  starting another job on that computer.

* Implemented --nice set the niceness of jobs running both locally and
  remotely.

* Implemented --dry-run to print the job without running it.

* Implemented --tty as the old default of assigning a tty to the first
  job causes problems.

* Review with focus on clusters. Thanks to Taylor Gillespie
  http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html

* Review with focus on protein similarity. 
  http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel

* Review in Spanish.
  http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux

* Quite a few bug fixes and man page updates.


20101202

* Implemented {/} for the input line with the path removed (basename).

* Implemented {/.} for the input line with extension and path removed
  (basename).

* Output from --progress is now sent to standard error instead of
  standard output.

* --eta was broken and counted down from 0. Now fixed.

* Standard output and standard error are flushed after every job so if
  standard output does not end with a newline it will still be grouped
  with the rest of standard output.

* --command, -c, --file, and -f are now removed as options. They were
  never used in practice.

* GetOptionsFromArray rewritten to work with old Perl libraries.

* The file COPYING now contains the GNU General Public License 3

* Major rewrite to make the code more object oriented and easier to
  maintain in the future.


20101113

* Using -j myfile the number of jobs can be changed while GNU Parallel
  is running simply by changing the content of myfile.

* Implemented --profile to use different .parallel/config for
  different situations.

* Ugly newlines in $PARALLEL and .parallel/config are no longer
  needed.  Instead you have to use \ in front of special shell
  characters.

* --workdir puts the files transferred to remote machines in a
  specified directory.

* $PARALLEL_PID is set to the process id of GNU Parallel.

* $PARALLEL_SEQ is set to the sequence number of the job.

* -v now only shows the command to run. Use -v -v to show the
   ssh/rsync wrapping.

* Slow spawning error is now only a warning.

* If stdin is a tty and input is read from stdin you now get a
  warning.

* GNU sql: \n and \x0a in arguments is replaced with newline.

* Patch for Debian package and spelling mistakes. Thanks to Rogério
  Brito <rbrito at ime dot usp dot br>

* Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
  palardy at gmail dot com>

* FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>

* Pardus package. Thanks to Fethican Coşkuner
  <fethicanc at gmail dot com>

* First review in Chinese. Thanks to 曾義峰:
  http://antbsd.twbbs.org/~ant/wordpress/?p=2876

* First review in print:
  http://www.linux-magazine.com/Issues/2010 Nov 2010

* First review in Spanish:
  http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando

* First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
  dot eu>:
  http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html

* Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
  http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life

* 5000 views of the intro video:
  http://www.youtube.com/watch?v=OpaiGYxkSuQ

* As usual a bunch of bugfixes and more usage examples in the man
  page.

* GNU Parallel was presented at FSCONS 2010-11-07:
  http://www.fscons.org/fs/gnu-parallel Hopefully the
  video will be online soon.


20100922

* See GNU Parallel live at FSCONS 2010-11-07:
  http://www.fscons.org/fs/gnu-parallel

* Untested Debian and xUbuntu packages available through OpenSUSE
  build service:
  https://build.opensuse.org/package/show?package=parallel&project=home%3Atange

* Using --retries a job will be retried on another computer if it
  fails. This is useful if some jobs fail for no apparent reason (such
  as network failure).

* BSD xargs -o (open /dev/tty) is now default for the job running in
  foreground. Useful for interactive commands like:
  ls | parallel -Xuj1 vi

* GNU sql now supports SQLite.

* Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.

* GNU sql now support --list-tables

* Alias for DBURL can contain '?query' part with %-quoting.


20100906

* Using --shebang GNU Parallel can be used as the parser for a script.
  E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
  hosts)

* First community generated bugfixes

* Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
  at altlinux dot org>

* Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
  <sunfreeware at gmail.com>

* Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
  available through OpenSUSE build service:
  https://build.opensuse.org/package/show?package=parallel&project=home%3Atange

* Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
  http://www.andrew-mcfague.com/linux/utilities-linux/
  commands-every-serious-nix-user-should-know/#parallel

* First 1000 views of the intro video

* sql - a small script to access sql bases from the command line which
  is a handy companion to parallel --colsep


20100822

* Counting semaphore functionality: start a job in the background. If
  N jobs are already running, wait for one to complete. Examples:
  sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
  sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait

* With --colsep a table can be used as input. Example:
  cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}

* --trim can remove white space around arguments.

* --sshloginfile '..' means use ~/.parallel/sshloginfile

* Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
  gmail dot com>

* OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
  de>

* NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>

* Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
  Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>

* Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
  Thanks to Phil Sung <psung at alum dot mit dot edu>


20100722

* Arguments can now be given on the command line. Example:
  parallel bzip2 ::: *.txt

* xapply like functionality. Example:
  parallel diff {1} {2} :::: filelist1 filelist2
  parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2

* Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>

* Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
  org>

* -L -l -n -s now implies -X unless -m is set


20100620

* New video showing the new options.
  http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
  http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/

* 100% options complete with xargs. All options for xargs can now be
  used in GNU Parallel - even the more exotic.

* --basefile for transferring basedata. When running jobs on remote
  computers --basefile will transfer files before the first jobs is
  run. It can be used to transfer data that remains the same for each
  job such as scripts or lookup tables.

* --progress shows progress. To see how many jobs is running on each
  server use --progress. It can be turned on even after GNU Parallel
  is started.

* --eta shows estimated time left in seconds.

* --halt-on-error stops if an error occurs. GNU Parallel will default
  to run all jobs - even if some of them fail. With --halt-on-error
  GNU Parallel can ignore errors, wait for the currently running jobs
  to finish, or stop immediately when an error occurs.


20100601

* GNU Parallel now has support for running jobs on remote machines

* Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
  http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech 


20100424

* GNU Parallel is now official GNU software