5 * Bug fixes and man page updates.
7 News about GNU Parallel:
9 * The first version of Parallel will be 20 years on 2022-01-06
11 * HerrComp Intro HPC gnu parallel
12 https://www.youtube.com/watch?v=tcgjKWfgWQY
15 https://qiita.com/toramili/items/44a770cfb9ef1edc9e26
17 * How To Install parallel on Ubuntu 20.04
18 https://installati.one/ubuntu/20.04/parallel/
20 * Distributing embarrassingly parallel tasks GNU Parallel
21 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
28 * Bug fixes and man page updates.
30 News about GNU Parallel:
32 * Otimizando o seu Hacking com o GNU Parallel - Mateus Buogo
33 https://www.youtube.com/watch?v=xIpPPZXDKGU
35 * SMACK 12 - Do it faster! Simple ways to use all those cores (and
36 GPUs) efficiently. https://www.youtube.com/watch?v=lXDGY7NvOYk
43 * Don't postpone output until $jobslots jobs have been started.
45 * Bug fixes and man page updates.
47 News about GNU Parallel:
49 * How to Install GNU Parallel using Anaconda | Linux
50 https://www.youtube.com/watch?v=UwDNVP-L0qA
52 * Install GNU Parallel from source code | Linux
53 https://www.youtube.com/watch?v=PIyJH4ben5o
55 * Compiling GNU Parallel on CentOS-7
56 https://thelinuxcluster.com/2021/10/19/compiling-gnu-parallel-on-centos-7/
63 * Bug fixes and man page updates.
65 News about GNU Parallel:
67 * 3 Programs that will Level Up your Bash Game
68 https://medium.com/codex/3-programs-that-will-level-up-your-bash-game-bf14e17e2291
70 * I Summarized 100+ Command-Line Tools for Data Scientists in 15
72 https://towardsdatascience.com/i-summarized-100-command-line-tools-for-data-scientists-in-15-minutes-976def544ffe
74 * Speed up Your Builds by Parallelizing
75 https://www.incredibuild.com/blog/speed-up-your-builds-by-parallelizing
77 * Bash: GNU Parallel with Curl
78 https://gist.github.com/dinh/93b936a55de9a331199d6582bc2921d2
85 * --ctag/--ctagstring colors the tag in different colors for each job.
87 * You can use unit prefixes (k, m, g, etc) with -n -N -L.
89 * Bug fixes and man page updates.
91 News about GNU Parallel:
93 * Parallelising jobs with GNU parallel
94 https://blog.ronin.cloud/gnu-parallel/
96 * Use multiple CPU Cores with your Linux commands - awk, sed, bzip2,
97 grep, wc, etc. https://cdmana.com/2021/07/20210728132344693t.html
99 * How to execute commands in parallel in Linux
100 https://net2.com/how-to-execute-commands-in-parallel-in-linux/
107 * --results no longer prints the result to standard output (stdout) as
109 https://lists.gnu.org/archive/html/parallel/2020-12/msg00003.html
111 * parset supports associative arrays in bash, ksh, zsh.
113 * Online HTML is now generated by Sphinx.
115 * Bug fixes and man page updates.
117 News about GNU Parallel:
119 * Cleaning Up Scanned Documents with Open Source Tools
120 https://kaerumy.medium.com/cleaning-up-scanned-documents-with-open-source-tools-9d87e15305b
127 * Bug fixes and man page updates.
129 News about GNU Parallel:
131 * How to use GNU Parallel
132 https://techtipbits.com/linux/how-to-use-gnu-parallel/
134 * How to Speed Up Bash Scripts with Multithreading and GNU Parallel
135 https://adamtheautomator.com/how-to-speed-up-bash-scripts-with-multithreading-and-gnu-parallel/
137 * Use Parallel to split by line
138 https://madflex.de/use-parallel-to-split-by-line/
140 * Optimizing long batch processes or ETL by using buff/cache properly
141 II (parallelizing network operations)
142 http://www.elsotanillo.net/2021/06/optimizing-long-batch-processes-or-etl-by-using-buff-cache-properly-ii-parallelizing-network-operations/
144 * Parallelization 3: GNU Parallel https://www.youtube.com/watch?v=Rl06WD60afA
151 * --plus includes {%%regexp} and {##regexp}.
153 * Bug fixes and man page updates.
155 News about GNU Parallel:
157 * Batch Calculate and Verify MD5 Checksum With GNU Parallel
158 https://omicx.cc/posts/2021-04-28-calculate-and-verify-md5-checksum-with-gnu-parallel/
160 * HerrComp Gnu parallel, c++11 threads 2021 04 28
161 https://www.youtube.com/watch?v=wDd9F9nn0qA
163 * Distributing embarrassingly parallel tasks GNU Parallel
164 https://ulhpc-tutorials.readthedocs.io/en/latest/sequential/gnu-parallel/
166 * Job Parallelization on Niagara
167 https://www.maryamdaryalal.com/post/job-parallelization-on-niagara
169 * Use Parallel to split by line
170 https://madflex.de/use-parallel-to-split-by-line/
172 * m1 multi-core batch convert with gpu parallel + ffmpeg
173 https://www.youtube.com/watch?v=hAuc0YsXv6A
180 * Bug fixes and man page updates.
182 News about GNU Parallel:
184 * Bioinformatics tutorials - linux and shell advanced - parallel
185 https://www.youtube.com/watch?v=5leL8pyl0XA
187 * GNU Parallel for quick gains
188 https://edbennett.github.io/high-performance-python/04-gnu-parallel/index.html
190 * Processing Linux Commands in Parallel
191 https://www.baeldung.com/linux/processing-commands-in-parallel
194 https://docs-research-it.berkeley.edu/services/high-performance-computing/user-guide/running-your-jobs/gnu-parallel/
196 * GNU Parallel 활용 가이드https://genoglobe.com/kribb/gnu_parallel
198 * Parallel Grep and Awk
199 https://www.highonscience.com/blog/2021/03/21/parallel-grep/
201 * Getting things done with shell scripting
202 https://doma.dev/blog/get-things-done-with-bash/
207 * Bug fixes and man page updates.
209 News about GNU Parallel:
211 * The very first version of Parallel dated 2002-01-06 was found in an
222 (".PHONY : job$jobnr\n",
226 unshift @makefile, "all : ",(map { "job$_ " } 1 .. $jobnr),"\n";
228 open (MAKE, "| make -k -f - -j $processes") || die;
229 print MAKE @makefile;
232 * Introduction to GNU Parallel
233 https://www.youtube.com/watch?v=Kj-6JkAqw-8
235 * Using GNU Parallel with GooseSLURM
236 https://readthedocs.org/projects/gooseslurm/downloads/pdf/latest/#chapter.7
239 https://github.com/lijingbu/omics/blob/main/why_gnu_parallel.md
244 * --filter only run jobs where the filter is true. The filter can
245 contain replacement strings and Perl code such as: '{1} < {2}+1'
247 * --template takes a text file as a template with replacement
248 strings. Then it replaces the replacement strings and saves it
249 under a new filename.
251 * --plus implements {0%} {0#} replacement string for zero padded slot
254 * Warn that you probably mean -d '\r\n' if the first 3 values end in
257 * {= perlexpression =} must return the same value, if run twice on the
260 * Man pages available as .rst-format.
262 * Bug fixes and man page updates.
264 News about GNU Parallel:
266 * A short tutorial on Gnu Parallel
267 https://www.polarmicrobes.org/a-short-tutorial-on-gnu-parallel/
269 * 5 reasons why I love coding on Linux
270 https://opensource.com/article/21/2/linux-programming
272 * Simple Tutorial to install & use GNU Parallel
273 https://medium.com/analytics-vidhya/simple-tutorial-to-install-use-gnu-parallel-79251120d618
275 * LiDO3 - first contact
276 https://www.lido.tu-dortmund.de/cms/de/LiDO3/LiDO3_first_contact_handout.pdf
278 * Rill Stage 2-1: Ways of command-line data analysis
279 https://blog.jastix.biz/post/rill-stage-2-1-cli-data-analysis/
281 * Introduction to GNU Parallel
282 https://blog.knoldus.com/introduction-to-gnu-parallel/
284 * GNU Parallel https://www.hahwul.com/cullinan/parallel/
289 * --memsuspend suspends jobs when there is little memory free. This
290 way you can run jobs in parallel that added up potentially will take
291 up more RAM than is available.
293 * $PARALLEL_ARGHOSTGROUPS and the replacement string {agrp} will give
294 the hostgroup given on the argument when using --hostgroup.
296 * Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss()
297 yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm()
298 yyyymmdd() hash($str)
300 * Bug fixes and man page updates.
302 News about GNU Parallel:
304 * Software Engineering For Scientists
305 https://canvas.stanford.edu/courses/133091
307 * Optional Individual Submission 4 Job Handling - GNU Parallel
308 https://www.youtube.com/watch?v=-tX0bFAYAxM
310 * 关于gnu parallel:GnuParallel:在集群上并行化脚本,脚本将文件写入主
311 节点https://www.codenong.com/25172209/
314 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
319 * --pipe engine changed making --pipe alpha quality.
321 * --results -.json outputs results as JSON objects on stdout (standard
324 * --delay 123auto will auto-adjust --delay. If jobs fail due to being
325 spawned too quickly, --delay will exponentially increase.
327 * --plus sets {hgrp} that gives the intersection of the hostgroups of
328 the job and the sshlogin that the job is run on.
330 * Bug fixes and man page updates.
332 News about GNU Parallel:
334 * Best practices for accelerating data migrations using AWS Snowball
336 https://aws.amazon.com/blogs/storage/best-practices-for-accelerating-data-migrations-using-aws-snowball-edge/
338 * Pass the Output of a Command as an Argument for Another
339 https://www.baeldung.com/linux/pass-cmd-output-as-an-argument
341 * Warwick RSE Drop-in - Workflow Management Part 2 - GNU Parallel
342 https://www.youtube.com/watch?v=t_v2Otgt87g
347 * Bug fixes and man page updates.
349 News about GNU Parallel:
351 * https://bash-prompt.net/guides/gnu-parallel-multi-server/
356 * --termseq now works for jobs running remotely.
358 * parsort: Performance optimized for 64-core machines.
360 * Bug fixes and man page updates.
362 News about GNU Parallel:
364 * Juan Sierra Pons has made a testimonial:
365 http://www.elsotanillo.net/wp-content/uploads/GnuParallel_JuanSierraPons.mp4
367 * 「翻译」在生物信息学中使用 GNU-Parallel
368 https://cloud.tencent.com/developer/article/1705499
373 * New CPU detection for GNU/Linux.
375 * Bug fixes and man page updates.
377 News about GNU Parallel:
379 * Aug 21, 2020 - More Unix tools
380 https://floki.blog/2020/08/more_unix_tools
387 * Max command line length is changed for MacOS - making this version
388 beta quality for MacOS.
390 * Bug fixes and man page updates.
397 * No new functionality
399 * Bug fixes and man page updates.
401 News about GNU Parallel:
403 * Tips for Running Jobs on your VM
404 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
406 * Introduction to GNU Parallel: Parallelizing Massive Individual Tasks
407 https://www.youtube.com/watch?v=QSFLTEyCKvo
410 http://www.hpc.lsu.edu/training/weekly-materials/2020-Spring/GNUParallel_Spring_2020.pdf
412 * Linux-Fu: Parallel Universe
413 https://hackaday.com/2020/06/29/linux-fu-parallel-universe/
415 * Resumable batch jobs with gnu parallel https://igor.io/parallel/
417 * Introducing Parallel into Shell
418 https://www.petelawson.com/post/parallel-in-shell/
420 * AV1 encoding parallelization with GNU Parallel
421 https://www.reddit.com/r/AV1/comments/fjvqp9/av1_encoding_parallelization_with_gnu_parallel/
423 * Beschleunigte Befehlsbearbeitung mit GNU Parallel
424 https://www.linux-community.de/ausgaben/linuxuser/2013/06/beschleunigte-befehlsbearbeitung-mit-gnu-parallel/
431 * No new functionality
433 * Bug fixes and man page updates.
435 News about GNU Parallel:
437 * GNU Parallel is used at NERSC:
438 https://www.nersc.gov/assets/Uploads/08-Workflows-20200616.pdf
440 * Resumable batch jobs with GNU Parallel https://igor.io/parallel/
442 * Lab Meeting technical talk
443 https://www.slideshare.net/hoffmanlab/gnu-parallel-194030490
445 * Open Sky Software Website Credits
446 https://www.openskysoftware.com/site-credits.htm
448 * Speed up your Python Scripts using Ubuntu and GNU Parallel
449 https://ecce.esri.ca/wpecce/2019/12/24/speed-up-your-python-scripts-using-ubuntu-and-gnu-parallel/
451 * Indispensable command-line tools
452 https://negfeedback.blogspot.com/2020/05/indispensable-command-line-tools.html
454 * GNU Parallel for simulations
455 http://pdebuyl.be/blog/2020/gnu-parallel-for-simulations.html
457 * Introduction to GNU parallel
458 https://bioinformaticsworkbook.org/Appendix/GNUparallel/GNU_parallel_examples.html
465 * While running a job $PARALLEL_JOBSLOT is the jobslot of the job. It
466 is equal to {%} unless the job is being retried. See {%} for
469 * While running a job $PARALLEL_SSHLOGIN is the sshlogin line with
470 number of cores removed. E.g. '4//usr/bin/specialssh user@host'
471 becomes: '/usr/bin/specialssh user@host'
473 * While running a job $PARALLEL_SSHHOST is the host part of an
474 sshlogin line. E.g. '4//usr/bin/specialssh user@host' becomes:
477 * --plus activates the replacement strings {slot} = $PARALLEL_JOBSLOT,
478 {sshlogin} = $PARALLEL_SSHLOGIN, {host} = $PARALLEL_SSHHOST
480 * Bug fixes and man page updates.
482 News about GNU Parallel:
484 * Portable Batch System (PBS) & GNU Parallel - Running a Program
485 Multiple Times in Parallel
486 https://www.youtube.com/watch?v=6ccbWu6Befo
488 * GNU Parallel przykład https://www.youtube.com/watch?v=gs_wG4Kt2G4
490 * Demo of LINUX APP - GNU PARALLEL - running multiple Gstreamer webcam
491 .sh scripts with only 1 command
492 https://www.youtube.com/watch?v=trQuA_wmWjg
497 This release celebrates GNU Parallel's 10 years as a GNU tool:
499 > commit ed2dfb1043768154d4e7678e01e10287155fa834
500 > Author: Ole Tange <ole@tange.dk>
501 > Date: Thu Apr 22 01:23:00 2010 +0200
503 > Name change: Parallel is now GNU Parallel.
504 > Basic structure for sshlogin and sshloginfile.
508 * parsort makes GNU sort run faster for files with more than 1M lines.
510 * Bug fixes and man page updates.
512 News about GNU Parallel:
514 * Several clusters have updated their documentation of GNU Parallel:
515 https://www.grid5000.fr/w/GNU_Parallel
516 https://research-it.berkeley.edu/virtual-training-running-jobs-parallel-savio
517 http://www.hpc.lsu.edu/training/archive/tutorials.php
519 * add_pho uses GNU Parallel: https://github.com/SeedlingsBabylab/add_pho
521 * GNU parallel使用笔记https://zhuanlan.zhihu.com/p/37340011
523 * Virtual Workshop: Running Jobs in Parallel on Savio
524 https://ais.berkeley.edu/events/virtual-workshop-running-jobs-parallel-savio/2020-04-20
526 * Free Concurrency with GNU Parallel
527 https://phili.pe/posts/free-concurrency-with-gnu-parallel/
532 * Bug fixes and man page updates.
534 News about GNU Parallel:
536 * The GNU Parallel course in Copenhagen is cancelled
537 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
539 * The GNU Parallel course in Århus is cancelled
540 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
542 * The 10 year anniversary may be cancelled, see
543 https://www.gnu.org/software/parallel/10-years-anniversary.html
545 * Running shell commands in parallel, via GNU Parallel
546 https://dev.to/saveriomiroddi/running-shell-commands-in-parallel-via-gnu-parallel-3a72
548 * Faster nmap scanning with the help of GNU parallel
549 https://badshah.io/experiment/faster-nmap-scanning-with-the-help-of-gnu-parallel/
554 * Bug fixes and man page updates.
559 * --blocktimeout dur - Time out for reading block when using
560 --pipe. If it takes longer than dur to read a full block, use the
561 partial block read so far.
563 * Bug fixes and man page updates.
565 News about GNU Parallel:
567 * GNU Parallel course in Copenhagen
568 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
570 * GNU Parallel course in Århus
571 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
573 * GNU Parallel pour accélérer vos process sous Linux
574 https://www.yvonh.com/gnu-parallel-pour-accelerer-vos-process-sous-linux/
576 * How to copy a file to multiple directories in Linux
577 https://net2.com/how-to-copy-a-file-to-multiple-directories-in-linux/
579 * Running linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
584 * GNU Parallel course in Copenhagen
585 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-med-ole-tange/
587 * GNU Parallel course in Århus
588 https://www.prosa.dk/nc/arrangementer/arrangement/gnu-parallel-og-parallelisering-i-unix-shellen/
590 * GNU Parallel is used in
591 https://github.com/JeffersonLab/rfw_tsf_extractor
593 * Bug fixes and man page updates.
598 * GNU Parallel was presented at Driving IT. Slides:
599 cloud.prosa.dk/s/drivingit
601 * Restarting supervisord processes in parallel
602 https://blog.naderman.de/2019/11/14/restarting-supervisord-processes-in-parallel/
604 * Using GNU Parallel to Create Archives Faster
605 https://www.reddit.com/r/DataHoarder/comments/dsgmhc/parallel_archiving_techniques/
607 * Bug fixes and man page updates.
612 * --tee will use --output-error=warn-nopipe if supported by tee.
614 * GNU Parallel will be presented at Driving IT 2019:
615 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
617 * UMN Duluth: Job parallelization with task arrays and GNU parallel
618 https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
620 * Genome updater uses GNU Parallel
621 https://github.com/pirovc/genome_updater
623 * Using GNU-Parallel for bioinformatics
624 https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
626 * Speeding up PostgreSQL ETL pipeline with the help of GODS
627 https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
629 * Runing linux commands in parallel
630 https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
632 * Research Computing University of Colorado Boulder contains an intro
634 https://readthedocs.org/projects/curc/downloads/pdf/latest/
636 * 如何使用Parallel在Shell中并行执行命令
637 https://www.myfreax.com/gnu-parallel/
639 * 如何测试 Amazon Elastic File System
640 https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
642 * Bug fixes and man page updates.
647 * --nice is now inherited by the nice level that GNU Parallel is
648 started at. So 'nice -n10 parallel' will also cause remote jobs to
649 be run at nice level 10.
651 * --delay is now accurate to within 10 ms
653 * GNU Parallel will be presented at Driving IT 2019:
654 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
656 * Greenland Ice Sheet solid ice discharge from 1986 through 2017
657 https://www.earth-syst-sci-data.net/11/769/2019/essd-11-769-2019.pdf
659 * App Center Cloud Build Machines > Installed Software > Utilities
660 https://docs.microsoft.com/en-us/appcenter/build/software
662 * Curryfinger - SNI & Host header spoofing utility
663 https://dualuse.io/blog/curryfinger/
666 https://wiki.cac.washington.edu/display/hyakusers/Hyak+parallel-sql
668 * A meditation on analysing data with Perl in parallel using GNU Parallel
669 https://www.reddit.com/r/perl/comments/cyo2qc/a_meditation_on_analysing_data_with_perl_in/
671 * Accélérer ses tâches avec GNU Parallel et les lots de tâches (UL)
672 https://www.eventbrite.ca/e/inscription-accelerer-ses-taches-avec-gnu-parallel-et-les-lots-de-taches-ul-71412840729
674 * RMACC Summit GNU Parallel
675 https://curc.readthedocs.io/en/latest/software/GNUParallel.html
677 * Introducing Parallel into Shell
678 https://petelawson.com/post/parallel-in-shell/
680 * Linux Productivity Tools
681 https://www.usenix.org/conference/lisa19/presentation/maheshwari
683 * Gnu/parallel + Nfs 实现共享文件网络的并发计算等操作
684 http://atomicer.cn/2018/01/18/gnu-parallel-nfs-%E5%AE%9E%E7%8E%B0%E5%85%B1%E4%BA%AB%E6%96%87%E4%BB%B6%E7%BD%91%E7%BB%9C%E7%9A%84%E5%B9%B6%E5%8F%91%E8%AE%A1%E7%AE%97%E7%AD%89%E6%93%8D%E4%BD%9C/#more
686 * Bug fixes and man page updates.
691 * GNU Parallel will be presented at Driving IT 2019:
692 https://ida.dk/arrangementer-og-kurser/konferencer/driving-it#beskrivelse
694 * Linux Productivity Tools
695 https://www.usenix.org/conference/lisa19/presentation/maheshwari
697 * Improve your reconnaissance performance by using GNU Parallel
698 https://mailchi.mp/3f46ceb46357/improve-your-reconnaissance-performance-by-using-gnu-parallel
700 * Paralel İşler / İşlemler / Programlar Bash’de Nasıl Çalıştırılır?
701 https://kaleinfo.com/2019/07/29/paralel-isler-islemler-programlar-bashde-nasil-calistirilir-2/
703 * Use POLYBAR to change WALLPAPER with GNU Parallel
704 https://www.youtube.com/watch?v=rjYg-b_eiRU
706 * Finding the Balance Between Speed & Accuracy During an Internet-wide
708 https://captmeelo.com/pentest/2019/07/29/port-scanning.html
710 * GNU Parallel Ryugu released
711 https://linuxreviews.org/GNU_Parallel_Ryugu_released
713 * CO2017 - CW1 - Operating Systems & Networks - Shell scripting
714 http://www.7daixie.com/2019071646302396.html
716 * Bug fixes and man page updates.
721 * {= uq; =} causes the replacement string to be unquoted. Example:
722 parallel echo '{=uq;=}.jpg' ::: '*'
724 * --tagstring {=...=} is now evaluated for each line with --linebuffer.
726 * Use -J ./profile to read a profile in current dir.
728 * Speedup of startup by 40%: Find the parent shell differently on
729 GNU/Linux, cache information about the CPU and which setpgrp method
730 to use to make GNU Parallel start 40% faster.
732 * $PARALLEL_SSHLOGIN can be used in the command line.
734 * Occasionally sane: Simple usage of GNU parallel
735 https://vfoley.xyz/parallel/
737 * How to run multiple bash scripts in parallel
738 https://techieroop.com/how-to-run-multiple-bash-scripts-in-parallel/
740 * Announcing Oracle Solaris 11.4 SRU10
741 https://blogs.oracle.com/solaris/announcing-oracle-solaris-114-sru10
743 * Руководство по использованию GNU Parallel https://zalinux.ru/?p=2623
745 * Bug fixes and man page updates.
750 * --shard can now take a column name and optionally a perl
751 expression. Similar to --group-by and replacement strings.
753 * Using AWK and R to parse 25tb
754 https://livefreeordichotomize.com/2019/06/04/using_awk_and_r_to_parse_25tb/
756 * Parallel and Visual testing with Behat
757 http://parallelandvisualtestingwithbehat.blogspot.com/p/blog-page.html
759 * 维基百科,自由的百科全书https://zh.wikipedia.org/wiki/GNU_parallel
761 * Bug fixes and man page updates.
766 * --group-by groups lines depending on value of a column. The value
769 * How to compress (bzip / gzip) a very large text quickly?
770 https://medium.com/@gchandra/how-to-compress-bzip-gzip-a-very-large-text-quickly-27c11f4c6681
772 * Simple tutorial to install & use GNU Parallel
773 https://medium.com/@gchandra/simple-tutorial-to-install-use-gnu-parallel-79251120d618
775 * Introducing Parallel into Shell
776 https://petelawson.com/post/parallel-in-shell/
778 * Bug fixes and man page updates.
783 * Invitation to the 10 years anniversary next year.
785 * Bug fixes and man page updates.
790 * SIGTERM is changed to SIGHUP, so sending SIGHUP will make GNU
791 Parallel start no more jobs, but wait for running jobs to finish.
793 * SIGTERM SIGTERM is changed to SIGTERM, so sending SIGTERM will make
794 GNU Parallel kill all running jobs.
796 * GNU Parallel now includes a cheat sheet: parallel_cheat.pdf
798 * High Throughput Computing on RMACC Summit and Beyond
799 https://calendar.colorado.edu/event/high_throughput_computing_on_rmacc_summit_and_beyond#.XH2NBhB7mV4
801 * GNU Parallel Cheat Sheet by cpriest
802 https://www.cheatography.com/cpriest/cheat-sheets/gnu-parallel/
804 * Use Multiple CPU Cores(Parallelize) with Single Threaded Linux
806 http://xensoft.com/use-multiple-cpu-cores-parallelize-with-single-threaded-linux-commands/
808 * Bug fixes and man page updates.
813 * --shard makes it possible to send input to a the same jobslot based
814 on the value in one column of the input. It is similar to sharding
817 * --shellquote --shellquote will shell quote the input twice.
819 * GNU Parallel is available in Termux
820 https://github.com/termux/termux-packages/tree/master/packages/parallel
822 * Linux, command line & MetaCentrum
823 https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf
825 * How to supercharge your bash workflows with GNU parallel
826 https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141
828 * GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI
830 * Parallelizing Freesurfer blog.cogneurostats.com/?p=148
832 * FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw
834 * FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/
836 * Come ridimensionare 10k foto con la riga di comando
837 https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
839 * 并行处理 – Gnu Parallel:嵌套并行
840 https://codeday.me/bug/20190122/552902.html
842 * シェルスクリプトでコマンドを並列実行する方法
843 https://www.kwbtblog.com/entry/2019/01/12/020423
845 * Bug fixes and man page updates.
850 * 'env_parallel --end-session' makes it possible to nest 'env_parallel
853 * Using GNU Parallel in pentesting https://youtu.be/mZ0OUJmkIlA?t=873
855 * Supercomputer Workshop: Feb 1&7
856 http://www.ece.unm.edu/featured-students/supercomputer-workshop-feb-17.html
858 * Bug fixes and man page updates.
863 * Better /proc/cpuinfo parser.
865 * Simpler job scheduling flow.
867 * MPGI Workshop: Job Parallelization with Task Arrays and GNU Parallel
868 https://www.msi.umn.edu/tutorials/mpgi-workshop-module-4
870 * CONCOCT uses GNU Parallel
871 https://media.readthedocs.org/pdf/concoct/latest/concoct.pdf
873 * If you use SLURM read
874 https://wiki.hpc.uconn.edu/index.php/Advanced_SLURM
877 https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
879 * Bug fixes and man page updates.
884 * Experimental simpler job flow control.
886 * 時間がかかるコマンドを GNU parallel で 並列実行する
887 https://qiita.com//grohiro/items/4db3fa951a4778c5c479
889 * Bug fixes and man page updates.
894 * env_parallel.fish: --session support (alpha quality)
896 * GNU Parallel was cited in: High-throughput sequencing of murine
897 immunoglobulin heavy chain repertoires using single side unique
898 molecular identifiers on an Ion Torrent PGM
899 https://doi.org/10.18632/oncotarget.25493
901 * GNU parallel in Japanese Wikipedia
902 https://ja.wikipedia.org/wiki/GNU_parallel
904 * Outils de paramétrisation des tâches: lots de tâches, GNU Parallel
905 https://www.eventbrite.ca/e/inscription-outils-de-parametrisation-des-taches-lots-de-taches-gnu-parallel-et-bqtools-midi-conference-de-50271076142
907 * Bug fixes and man page updates.
912 * Minix is supported again.
914 * Updated graph showing GNU Parallel's overhead per job for each
915 version. https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
917 * Intro to Computing at CARC includes introduction to GNU Parallel
918 http://carc.unm.edu/education--training/workshops-and-seminars.html
920 * Fast-GBS uses GNU Parallel https://bitbucket.org/jerlar73/fast-gbs/wiki/Home
922 * Belgium at 10 m resolution in July 2018 http://www.cesbio.ups-tlse.fr/multitemp/?p=14116
924 * Bug fixes and man page updates.
929 * parset sets exit code.
931 * How to install GNU Parallel
932 https://www.techrepublic.com/videos/how-to-install-gnu-parallel/
934 * Bug fixes and man page updates.
939 * The quoting engine has been changed. Instead of using \-quoting GNU
940 Parallel now uses '-quoting in bash/ash/dash/ksh. This should
941 improve compatibility with different locales. This is a big change
942 causing this release to be alpha quality.
944 * The CPU calculation has changed. By default GNU Parallel uses the
945 number of CPU threads as the number of CPUs. This can be changed to
946 the number of CPU cores or number of CPU sockets with
947 --use-cores-instead-of-threads or --use-sockets-instead-of-threads.
949 * The detected number of sockets, cores, and threads can be shown with
950 --number-of-sockets, --number-of-cores, and --number-of-threads.
952 * env_parallel now support mksh using env_parallel.mksh.
954 * GNU Parallel is distributed as part of Snippy
955 https://github.com/tseemann/snippy
957 * GNU Parallel: Ejecutar comandos simultáneamente en Linux
958 https://esgeeks.com/gnu-parallel-ejecutar-comandos-simultaneo-linux/
960 * Parallel download genomic data with GNU-Parallel
961 https://digibio.blogspot.com/search/label/GNU-Parallel
963 * Bug fixes and man page updates.
968 * Deal better with multibyte chars by forcing LC_ALL=C.
970 * GNU Parallel was introduced in Pincount Podcast:
971 https://pincountpodcast.com/episodes/29.html
973 * GNU Parallel was shown on Danish national news for 1.7 seconds: dr.dk
975 * How to run Linux commands simultaneously with GNU Parallel
976 https://www.techrepublic.com/article/how-to-run-commands-simultaneously-with-gnu-parallel/#ftag=RSS56d97e7
978 * Easy parallelization with GNU parallel
979 http://mpharrigan.com/2016/08/02/parallel.html
981 * GNU Parallel for mutlithreaded tasks
982 http://slhogle.github.io/2016/gnu-parallel/
984 * A GNU Parallel Clustering Demo
985 https://www.crowdsupply.com/ground-electronics/circumference/updates/a-gnu-parallel-clustering-demo
987 * 使用 GNU Parallel 提高 Linux 命令行执行效率
988 https://linux.cn/article-9718-1.html
990 * Ejecutando tareas desde consola simultáneamente con GNU Parallel
991 https://poesiabinaria.net/2018/06/ejecutando-tareas-desde-consola-simultaneamente-gnu-parallel/
993 * Cómo ejecutar varias tareas simultáneamente en el terminal con GNU
995 https://www.ubuntizando.com/como-ejecutar-varias-tareas-simultaneamente-en-el-terminal-con-gnu-parallel/
997 * GNU Parallel 활용 가이드 http://genoglobe.kr/kribb/gnu_parallel
999 * Bug fixes and man page updates.
1004 * --tty allows for more programs accessing /dev/tty in parallel. Some
1005 programs require tty access without using it.
1007 * env_parallel --session will record names in current environment in
1008 $PARALLEL_IGNORED_NAMES and exit. It is only used with env_parallel,
1009 and can work like --record-env but in a single session.
1011 * 35 day course: Linux shell scripting and text processing for big
1012 data https://comquest.in/training
1014 * How To Use Your Entire CPU In Bash With Parallel
1015 https://bash-prompt.net/guides/parallell-bash/
1017 * An easy way to run parallel jobs on Stampede2
1018 https://blog.uta.edu/xus/2017/09/29/an-easy-way-to-run-parallel-jobs-on-stampede2/
1020 * Get more done at the Linux command line with GNU Parallel
1021 https://opensource.com/article/18/5/gnu-parallel
1023 * Save Time with Modern Search Techniques
1024 https://www.sans.org/summit-archives/file/summit-archive-1524582079.pdf
1026 * GNU Parallel: haz más cosas simultáneamente en el terminal
1027 https://blog.desdelinux.net/gnu-parallel-haz-mas-cosas-simultaneamente-en-el-terminal/
1029 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
1030 https://www.slideshare.net/koji_matsuda/gnu-parallel
1032 * Bug fixes and man page updates.
1037 * --csv makes GNU Parallel parse the input sources as CSV. When used
1038 with --pipe it only passes full CSV-records.
1040 * Time in --bar is printed as 1d02h03m04s.
1042 * Optimization of --tee: It spawns a process less per value.
1044 * The GNU Parallel 2018 book is now available:
1045 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
1047 * Modern pentest tricks for faster, wider, greater engagement (15)
1048 https://conference.hitb.org/hitbsecconf2018ams/materials/D1%20COMMSEC%20-%20Thomas%20Debize%20-%20Modern%20Pentest%20Tricks%20for%20Faster,%20Wider,%20Greater%20Engagements.pdf
1050 * Running many serial jobs efficiently
1051 https://userinfo.surfsara.nl/documentation/running-many-serial-jobs-efficiently
1053 * GNU Parallel: как сохранить результаты нескольких команд для
1054 переменной? http://fliplinux.com/gnu-parallel-6.html
1056 * Running Multiple Commands in Parallel on a GNU Linux
1057 https://www.youtube.com/watch?v=sHpTywpb4_4
1059 * Klaatu covers the documentation of GNU parallel in episode 12x15
1060 http://gnuworldorder.info/
1062 * Bug fixes and man page updates.
1067 * niceload -p can now take multiple pids separated by comma
1069 * --timeout gives a warning when killing processes
1071 * --embed now uses the same code for all supported shells
1073 * --delay can now take arguments like 1h12m07s
1075 * Parallel. Straight from your command line
1076 https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee
1078 * GNU Parallel was used in POAP-Parallelized Open Babel & Autodock
1079 suite Pipeline https://github.com/inpacdb/POAP
1081 * Pi Cluster Parallel Script First Fire
1082 https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/
1084 * How to Restore MySQL Logical Backup at Maximum Speed
1085 https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/
1087 * Bug fixes and man page updates.
1092 * --embed makes it possible to embed GNU parallel in a shell
1093 script. This is useful if you need to distribute your script to
1094 someone who does not want to install GNU parallel.
1096 * Parallelize Your Large Batches of Small Jobs
1097 https://amito.me/2018/02/Parallelize-Your-Large-Batches-of-Small-Jobs/
1099 * Klaatu expounds upon xargs and talks GNU parallel in episode 12x6
1100 http://gnuworldorder.info/
1102 * How to use parallel to speed up your work
1103 https://mike42.me/blog/how-to-use-parallel-to-speed-up-your-work
1105 * Transient compute clustering with GNU Parallel and sshfs
1106 https://dennismungai.wordpress.com/2018/02/06/transient-compute-clustering-with-gnu-parallel-and-sshfs/
1108 * Useful Examples of ffmpeg and GNU parallel on the command-line
1109 https://dennismungai.wordpress.com/2018/02/06/useful-examples-of-ffmpeg-and-gnu-parallel-on-the-command-line/
1111 * Data Science at the Command Line (Chapter 8.3)
1112 https://www.datascienceatthecommandline.com/
1114 * Bug fixes and man page updates.
1119 * bash / 병렬 https://code.i-harness.com/ko/docs/bash/2a1a
1121 * 15分钟神器gnu parallel 入门观止
1122 http://www.ezilin.com/2018/01/15gnu-parallel.html
1124 * How To Run Multiple Commands In Parallel on Linux
1125 https://www.slashroot.in/how-run-multiple-commands-parallel-linux
1127 * Bug fixes and man page updates.
1132 * env_parset for ash, dash, ksh, sh, zsh
1134 * Automatically create hostgroups if argument ends in @sshlogin
1136 * Tips for running jobs on your VM
1137 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1139 * Node-local scheduling
1140 https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
1142 * GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
1144 * GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
1146 * Using GNU Parallel
1147 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1149 * Bug fixes and man page updates.
1154 * Using GNU Parallel to speed up Google Cloud Infrastructure
1156 https://medium.com/@pczarkowski/using-gnu-parallel-to-speed-up-google-cloud-infrastructure-management-53e5c555ec05
1158 * What is gnu parallel
1159 http://wiki.chpc.ac.za/howto:bioinformatics:gnu-parallel
1161 * Parallel, Scripts, Clusters, & Easy Use
1162 https://chiefio.wordpress.com/2017/11/10/parallel-scripts-clusters-easy-use/
1164 * Bug fixes and man page updates.
1169 * Initial support for XDG Base Directory $XDG_* environment variables.
1171 * Validating half a million TIFF files. Part
1173 https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1175 * Turing data science class: Cluster computing
1176 https://www.turing.ac.uk/events/masterclass-cluster-computing/
1178 * Butlin:Unix for Bioinformatics - advanced tutorial
1179 https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
1181 * พยายามใช้ CPU ให้ครบทุก CORE
1182 https://veer66.wordpress.com/2017/09/02/use-multi-core/
1184 * Examples on using GNU Parallel
1185 https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
1187 * Bug fixes and man page updates.
1192 * Use '--limit myprog' to make a dynamic job limit. Just return 0 to
1193 spawn another job, 1 to not spawn another job, and 2 to kill the
1196 * PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
1199 * Download all of humble bundle books in parallel
1200 https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel
1202 * Bug fixes and man page updates.
1207 * --line-buffer no longer uses tempfiles. This is faster and makes it
1208 possible for a single process to output more data than there is free
1211 * Vote for GNU Parallel's community ads on
1212 http://meta.unix.stackexchange.com/a/4356/2972
1213 http://meta.askubuntu.com/a/16750/22307
1214 http://meta.serverfault.com/a/9040/45704
1216 * Edit images with GNU Parallel and ImageMagick
1217 https://fedoramagazine.org/edit-images-parallel-imagemagick/
1219 * Running Bash Commands in Parallel
1220 https://dzone.com/articles/running-bash-commands-in-parallel-1
1222 * Today I Learned: GNU parallel, plate tectonics
1223 https://medium.com/@nornagon/today-i-learned-gnu-parallel-plate-tectonics-9fcf24045e63
1225 * GNU Parallel Tutorial
1226 https://www.upf.edu/web/sct-sit/gnu-parallel-tutorial
1228 * Validating half a million TIFF files
1229 http://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
1231 * Blender and GNU Parallel
1232 https://www.blendernation.com/2017/08/16/blender-gnu-parallel/
1234 * Quick Introduction to GNU Parallel
1235 https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1237 * A simple distributed animation render example using GNU Parallel
1238 https://gitlab.com/skororu/scripts
1240 * Do stuff on things, in parallel
1241 http://blogs.fluidinfo.com/terry/2017/08/05/do-stuff-on-things-in-parallel/
1243 * Bash And GNU Parallel NGS Bidniz
1244 http://ino.pm/outreach/presentations/2014/03/genomics-wranglers/index.html
1246 * Using for loop vs Gnu parallel for BLAST
1247 http://www.ettemalab.org/using-for-loop-vs-gnu-parallel-for-blast/
1249 * 并行rsync https://gxnotes.com/article/175866.html
1251 * Bug fixes and man page updates.
1256 * Vote for GNU Parallel's community ads on
1257 http://meta.unix.stackexchange.com/a/4356/2972
1258 http://meta.askubuntu.com/a/16750/22307
1259 http://meta.serverfault.com/a/9040/45704
1261 * GNU Parallel was cited in: Hayabusa: Simple and Fast Full-Text
1262 Search Engine for Massive System Log Data
1263 http://dl.acm.org/citation.cfm?id=3095788
1265 * コマンドの並列化を行える『GNU parallel』の個人的使い方まとめ
1266 https://orebibou.com/2017/07/%E3%82%B3%E3%83%9E%E3%83%B3%E3%83%89%E3%81%AE%E4%B8%A6%E5%88%97%E5%8C%96%E3%82%92%E8%A1%8C%E3%81%88%E3%82%8B%E3%80%8Egnu-parallel%E3%80%8F%E3%81%AE%E5%80%8B%E4%BA%BA%E7%9A%84%E4%BD%BF%E3%81%84/
1268 * How to play and play with thousands of digitized 78rpm records
1269 https://blog.archive.org/2017/07/10/how-to-play-and-play-with-78rpm-record-transfers/
1271 * 并行一个for循环 https://gxnotes.com/article/130363.html
1273 * RFC 8142: GeoJSON Text Sequences
1274 https://sgillies.net/2017/05/18/rfc-8142-geojson-text-sequences.html
1276 * Git auto fetch script I run every day
1277 https://lukas.zapletalovi.com/2017/07/git-auto-fetch-script-i-run-every-day.html
1279 * cores, cpus and threads
1280 http://crazyhottommy.blogspot.de/2017/07/cores-cpus-and-threads.html
1282 * Bug fixes and man page updates.
1287 * The command line can now contain \257 (Macron) or UTF characters
1290 * Vote for GNU Parallel's community ads on
1291 http://meta.unix.stackexchange.com/a/4356/2972
1292 http://meta.askubuntu.com/a/16750/22307
1293 http://meta.serverfault.com/a/9040/45704
1295 * Graph for overhead for 1000 jobs has been updated. It remains
1296 steadily at 3.5 ms per job on a 1.7 GHz machine
1297 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1299 * GNU Parallel was cited in: The topology of the directed clique
1300 complex as a network invariant
1301 https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
1303 * GNU Parallel was cited in: Improving Optical Character Recognition
1304 of Finnish Historical Newspapers with a Combination of Fraktur &
1305 Antiqua Models and Image
1306 http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
1308 * GNU Parallel was cited in: Parallel Execution of Structural Mechanic
1309 Tasks with Use of Small Supercomputers
1310 http://www.sciencedirect.com/science/article/pii/S1877705817324815
1312 * GNU Parallel was cited in: Integration of a Multilingual Preordering
1313 Component into a Commercial SMT Platform
1314 https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
1316 * Tips For Running Jobs On Your VM
1317 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
1319 * Speed up ML model development with GNU Parallel
1320 https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
1322 * Parallelizing a Python Function for the Extremely Lazy
1323 http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
1326 http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
1328 * Bug fixes and man page updates.
1333 * --timeout can now use s=second,m=minute,h=hour,d=day.
1335 * --dr is now an alias for --dry-run.
1337 * Vote for GNU Parallel's community ads on
1338 http://meta.unix.stackexchange.com/a/4356/2972
1339 http://meta.askubuntu.com/a/16750/22307
1340 http://meta.serverfault.com/a/9040/45704
1342 * GNU Parallel was cited in: Feature Detection in Visual Cortex during
1343 Different Functional States
1344 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
1346 * GNU Parallel was cited in: From genotype to phenotype: inferring
1347 relationships between microbial traits and genomic components
1348 https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
1350 * GNU Parallel was cited in: Designing fecal microbiota transplant
1351 trials that account for differences in donor stool efficacy
1352 http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
1354 * GNU Parallel was cited in: Assessing the predictability of
1355 anharmonic vibrational modes at the example of hydroxyl groups - ad
1356 hoc construction of localised modes and the influence of structural
1357 solute–solvent motifs
1358 http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
1360 * GNU Parallel was cited in: Mapping Environmental Influences on
1362 ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
1364 * GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
1365 Glass Transition in One Dimension
1366 https://arxiv.org/pdf/1704.02257.pdf
1368 * GNU Parallel was cited in: Online Automatic Post-editing for MT in a
1369 Multi-Domain Translation Environment
1370 https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
1372 * GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
1373 moderate-resolution reflective solar bands against MODIS Aqua over
1375 http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
1377 * GNU Parallel was cited in: Scattering Networks: Efficient 2D
1378 Implementation And Application To Melanoma Classification
1379 http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
1381 * GNU Parallel was cited in: Genome-scale detection of positive
1382 selection in 9 primates predicts human-virus evolutionary conflicts
1383 http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
1385 * GNU Parallel is used in: Creates a speech dataset for deep learning
1386 https://github.com/jupiter126/Create_Speech_Dataset
1388 * GNU Parallel is used in: Parse and process the demixing secrets
1389 dataset (DSD100) https://github.com/faroit/dsdtools
1391 * First glance at the gnu parallel utility
1392 https://ibiscybernetics.com/blog/2017-04-05.html
1394 * Installing parallel from source
1395 https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
1397 * How to run command or code in parallel in bash shell under Linux or
1399 https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
1401 * Parallel Serial Jobs Using GNU Parallel
1402 http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
1404 * GNU Parallel or How to list millions of S3 objects
1405 https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
1407 * Which Is the Best Tool for Copying a Large Directory Tree Locally?
1408 http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
1410 * Bug fixes and man page updates.
1415 * --halt supports done in addition to success and fail.
1417 * parset will set variables in parallel in Bash.
1419 * Perl 5.6 on Irix is no longer supported.
1421 * Vote for GNU Parallel's community ads on
1422 http://meta.unix.stackexchange.com/a/4356/2972
1423 http://meta.askubuntu.com/a/16750/22307
1424 http://meta.serverfault.com/a/9040/45704
1426 * GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
1427 from transcriptomic data using MapReduce
1428 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
1430 * GNU Parallel was cited in: StrAuto: automation and parallelization
1431 of STRUCTURE analysis
1432 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
1434 * GNU Parallel was cited in: Trespassing the Boundaries: Labeling
1435 Temporal Bounds for Object Interactions in Egocentric Video
1436 https://128.84.21.199/pdf/1703.09026.pdf
1438 * GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
1440 * Using GNU Parallel
1441 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
1443 * Find and xargs and parallel
1444 http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
1446 * Quick Introduction to GNU Parallel
1447 https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
1449 * Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
1451 * Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
1453 * Bug fixes and man page updates.
1458 * --rpl can now take arguments by adding '(regexp)' in the replacement
1461 * Vote for GNU Parallel's community ads on
1462 http://meta.unix.stackexchange.com/a/4356/2972
1463 http://meta.askubuntu.com/a/16750/22307
1464 http://meta.serverfault.com/a/9040/45704
1466 * GNU Parallel was cited in: shmlast: An improved implementation of
1467 Conditional Reciprocal Best Hits with LAST and Python
1468 https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
1470 * GNU Parallel was cited in: Prediction of relativistic electron flux
1471 in the Earth’s outer radiation belt at geostationary orbit by
1473 https://link.springer.com/article/10.1134/S0016793217010108
1475 * GNU Parallel was cited in: Higher likelihood of multiple bit-flips
1476 due to neutron-induced strikes on logic gates
1477 https://arxiv.org/pdf/1612.08239.pdf
1479 * GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
1480 Calculation of Hybrid Classical and Quantum Free Energies
1481 http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
1483 * GNU Parallel was cited in: Learning string distance with smoothing
1484 for OCR spelling correction
1485 https://link.springer.com/article/10.1007/s11042-016-4185-5
1487 * GNU Parallel was cited in: The Breakdown of String Perturbation
1488 Theory for Many External Particles
1489 https://arxiv.org/pdf/1611.08003.pdf
1491 * GNU Parallel was cited in: Operations Research Applications in
1493 https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
1495 * GNU Parallel was cited in: Parallel Computing: GNU Parallel
1496 http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
1498 * Stig Sandbeck Mathisen: Change All The Passwords (Again)
1499 http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
1501 * Trabalhando como Paralelismo no Bash usando o GNU Parallel
1502 http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
1504 * GNU parallel と SQL*Loader 組み合わせ実行例
1505 https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
1507 * Bug fixes and man page updates.
1512 * env_parallel now supports /bin/sh, ash, dash.
1514 * --tee will pipe all data to all jobs. Used with --pipe/--pipepart
1515 and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
1516 {} | wc -l' ::: {0..9}
1518 * If --results {replstr} ends in /: save in dir. Otherwise save as
1519 file. Example: parallel --results {} echo {} ::: a b c
1521 * Vote for GNU Parallel's community ads on
1522 http://meta.unix.stackexchange.com/a/4356/2972
1523 http://meta.askubuntu.com/a/16750/22307
1524 http://meta.serverfault.com/a/9040/45704
1526 * GNU Parallel was cited in: Low-delay forwarding with multiple
1527 candidates for VANETs using multi-criteria decision making
1528 http://ieeexplore.ieee.org/document/7835961/
1530 * GNU Parallel was cited in: An Integrated Simulator and Dataset that
1531 Combines Grasping and Vision for Deep Learning
1532 https://arxiv.org/pdf/1702.02103.pdf
1534 * GNU Parallel was cited in: A Bayesian model selection approach for
1535 identifying differentially expressed transcripts from RNA sequencing
1536 data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
1538 * GNU Parallel was cited in: The impact of copy number variation on
1539 gout, and the apple genome
1540 https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
1542 * GNU Parallel was cited in: Reaction rates for reaction-diffusion
1543 kinetics on unstructured meshes
1544 http://aip.scitation.org/doi/10.1063/1.4975167
1546 * GNU Parallel was cited in: Modeling prediction error improves power
1547 of transcriptome-wide association studies
1548 http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
1550 * GNU Parallel was cited in: Proper experimental design requires
1551 randomization/balancing of molecular ecology experiments
1552 http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
1554 * GNU Parallel was cited in: Experiment-based thermal micromagnetic
1555 simulations of the magnetization reversal for ns-range clocked
1557 http://aip.scitation.org/doi/full/10.1063/1.4974021
1559 * GNU Parallel was cited in: The University of Edinburgh’s systems
1560 submission to the MT task at IWSLT
1561 http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
1563 * Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
1565 * Job: DevOps Engineer/Senior Systems Administrator in New York, New
1567 http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
1569 * Training in GNU Parallel:
1570 https://www.carc.unm.edu/education-outreach/workshops--training/
1572 * Training in GNU Parallel:
1573 http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
1575 * Batch Convert Images from PNG to JPEG
1576 http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
1578 * Accelerating Oxford Nanopore Basecalling
1579 http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
1581 * parallel и imagemagick в loop на bash
1582 https://www.linux.org.ru/forum/development/13190247
1584 * Bug fixes and man page updates.
1594 * sql now uses a temporary credentials file for MySQL to avoid
1597 * --sqlmaster and --sqlworker have been reworked.
1599 * --sqlworker only reads from the DBURL: any command and any arguments
1602 * --sqlmaster +DBURL will append different commands to the DBURL and
1603 not erase the table.
1605 * If --results contain a replacement string, no tree structure with
1606 args will be generated.
1608 * --fg --tmux or --fg --tmuxpane will connect to the tmux.
1610 * GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
1611 Classification, and Measurement
1612 https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
1614 * GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
1615 Social and Solitary Wild Bees Detects Associations with Eukaryote
1616 Parasites and New Viruses
1617 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
1619 * GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
1620 of Metric Temporal Logic
1621 http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
1623 * 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
1625 * GNU Parallel as a queuing system:
1626 http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
1628 * AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
1630 http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
1631 and https://youtu.be/PlTuJx4VnGw?t=30m16s
1633 * Bug fixes and man page updates.
1638 * --results foo.csv will save output as a CSV-file. Can be directly
1639 imported into R or LibreCalc.
1641 * When using --pipepart a negative --block-size is not interpreted as
1642 a block size but as the number of blocks each jobslot should have.
1644 * --sqlmaster/--sqlandworker will append jobs to the DBURL if the
1645 DBURL is prepended with +.
1647 * GNU Parallel was cited in: A cloud-based workflow to quantify
1648 transcript-expression levels in public cancer compendia
1649 http://www.nature.com/articles/srep39259
1651 * GNU Parallel was cited in: Determination of crystal structures of
1652 proteins of unknown identity using a marathon molecular replacement
1653 procedure: Structure of Stenotrophomonas maltophilia
1654 phosphate-binding protein
1655 https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
1657 * GNU Parallel was cited in: Large-scale benchmarking reveals false
1658 discoveries and count transformation sensitivity in 16S rRNA gene
1659 amplicon data analysis methods used in microbiome studies
1660 http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
1662 * GNU Parallel was cited in: Decomposing Images into Layers via
1664 https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
1666 * Transient compute clustering with GNU Parallel and sshfs
1667 https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
1669 * 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
1670 http://www.tecmint.com/linux-image-conversion-tools/
1672 * All's Fair in Love and Distributed Storage
1673 http://cohesity.com/blog/alls-fair-love-distributed-storage/
1675 * How can I use GNU Parallel to run a lot of commands in parallel
1676 https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
1678 * 정해영의 블로그 - JEONG Haeyoung's blog
1679 http://blog.genoglobe.com/2016/11/gnu-parallel.html
1681 * 在Linux下将PNG和JPG批量互转的四种方法
1682 http://os.51cto.com/art/201612/524182.htm
1684 * Running in parallel http://tomkimpson.com/howto/gnuparallel/
1686 * Taco Bell Parallel Programming
1687 https://giorgos.sealabs.net/taco-bell-parallel-programming.html
1689 * Bug fixes and man page updates.
1694 * --record-env can now be used with env_parallel for bash, ksh, pdksh,
1697 * GNU Parallel was cited in: An improved implementation of Conditional
1698 Reciprocal Best Hits with LAST and Python
1699 https://pypi.python.org/pypi/shmlast/1.0.3
1701 * GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
1703 http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
1705 * GNU/Parallel – Run multiple commands simultaneously
1706 https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
1708 * Tutorial: Parallel web scraping with CasperJS and GNU Parallel
1709 http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
1711 * Bug fixes and man page updates.
1716 * First command no longer gets stdin as it causes unpredictable issues.
1718 * GNU Parallel was cited in: Efficiently parallelized modeling of
1719 tightly focused, large bandwidth laser pulses
1720 https://arxiv.org/pdf/1609.08146v1.pdf
1722 * How to crunch lots of geodata in parallel
1723 http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
1725 * GNU parallel is my new toaster
1726 http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
1728 * Bug fixes and man page updates.
1733 * parcat - cat files or fifos in parallel
1735 * GNU Parallel was cited in: Velocity: A Netflow Based Optimized
1737 https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
1739 * GNU Parallel was cited in: Viral deep sequencing needs an adaptive
1740 approach: IRMA, the iterative refinement meta-assembler
1741 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
1743 * Using GNU Parallel and ImageMagick for Conversions
1744 https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
1746 * Training in GNU Parallel
1747 http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
1749 * Chown Ceph OSD data directory using GNU Parallel
1750 http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
1752 * FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
1754 * dDocent: A guide to ddRAD sequencing
1755 https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
1757 * SOFTWARE GNU Parallel
1758 http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
1760 * Bug fixes and man page updates.
1765 * --tmuxpane opens jobs in panes in tmux. Useful if you want to
1766 monitor progress of less than 100 simultaneous jobs.
1768 * --linebuffer now treats \r as line ending, too.
1770 * Perl changes forces use of floats to be given with leading zero, so
1773 * --xapply renamed to --link.
1775 * Support for pdksh will fade until someone packages it for Ubuntu 16.
1777 * GNU Parallel was cited in: Exome sequencing of geographically
1778 diverse barley landraces and wild relatives gives insights into
1779 environmental adaptation
1780 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
1782 * GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
1783 Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
1785 * Easy parallelization with GNU parallel
1786 http://mpharrigan.com/2016/08/02/parallel.html
1788 * Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
1790 http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
1793 http://www.manitou-mail.org/blog/2016/07/parallel-import/
1795 * Large file batch processing using NodeJs and GNU Parallel
1796 http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
1798 * Bug fixes and man page updates.
1803 * env_parallel is now ready for wider testing. It is still beta
1806 * env_parallel is heavily modified for all shells and testing has been
1809 * Selectively choosing what to export using --env now works for
1810 env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
1812 * --round-robin now gives more work to a job that processes faster
1813 instead of same amount to all jobs.
1815 * --pipepart works on block devices on GNU/Linux.
1817 * GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
1818 Introns for Phylogenetics from High-Throughput Sequencing Reads
1819 Using Target Enrichment
1820 http://www.bioone.org/doi/full/10.3732/apps.1600016
1822 * GNU Parallel was cited in: StrAuto - Automation and Parallelization
1823 of STRUCTURE Analysis
1824 http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
1826 * GNU Parallel was cited in: Tools and techniques for computational
1828 http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
1830 * GNU Parallel was cited in: FlashPCA: fast sparse canonical
1831 correlation analysis of genomic data
1832 http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
1834 * GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
1835 Fine-tuning Query Expansion and Unification Strategies
1836 http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
1838 * GNU Parallel was cited in: The Evolution and Fate of
1839 Super-Chandrasekhar Mass White Dwarf Merger Remnants
1840 http://arxiv.org/pdf/1606.02300.pdf
1842 * GNU Parallel was cited in: Evaluation of Coastal Scatterometer
1844 https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
1846 * GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
1848 * The iconv slurp misfeature
1849 http://www.openfusion.net/linux/iconv_slurp_misfeature
1851 * แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
1853 * Bug fixes and man page updates.
1858 * $PATH can now be exported using --env PATH. Useful if GNU Parallel
1859 is not in your path on remote machines.
1861 * If --block is left out, --pipepart will use a block size that will
1862 result in 10 jobs per jobslot.
1864 * The cookie from 2016-01-04 was won by Morgan Rodgers on the
1865 2016-06-06 after 5 months.
1867 * Vote for GNU Parallel's community ad on
1868 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
1870 * GNU Parallel was cited in: Genotypic Resistance Tests Sequences
1871 Reveal the Role of Marginalized Populations in HIV-1 Transmission in
1872 Switzerland http://www.nature.com/articles/srep27580
1874 * GNU Parallel was cited in: A Deep-Learning Approach for Operation of
1875 an Automated Realtime Flare Forecast
1876 https://arxiv.org/pdf/1606.01587.pdf
1878 * Unix parallel: Populating all the USB sticks
1879 http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
1881 * GNU Parallel is a fantastic utility https://www.dray.be/parallel/
1883 * Combining a large number of VCF files
1884 https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
1886 * Useful Scraping Techniques
1887 http://blog.apps.npr.org/2016/06/17/scraping-tips.html
1889 * Tools of the trade
1890 http://onox.com.br/2015/05/tools-of-the-trade/#more-198
1892 * Armslist scraper https://github.com/nprapps/armslist-scraper/
1894 * Bug fixes and man page updates.
1899 * niceload --net pauses the program if the internet connection is
1902 * Vote for GNU Parallel's community ad on
1903 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
1905 * Updated speed comparison between versions
1906 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1908 * GNU Parallel was cited in: Improving computation efficiency by
1909 parallel programming
1910 http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
1912 * GNU Parallel was cited in: A supernova feedback implementation for
1913 the astrophysical simulation software Arepo
1914 https://arxiv.org/abs/1604.06071
1916 * GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
1917 resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
1919 * GNU Parallel was cited in: Host-pathogen co-evolution and the
1920 emergence of broadly neutralizing antibodies in chronic infections
1921 https://arxiv.org/abs/1512.06296
1923 * GNU Parallel was cited in: Pacific People, Metabolic Disease and
1924 Evolutionary Processes: a mitochondrial DNA study
1925 https://otago.ourarchive.ac.nz/handle/10523/6340
1927 * GNU Parallel was cited in: The effect of domain modeling on
1928 efficiency of planning: Lessons from the Nomystery domain
1929 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
1931 * GNU Parallel was cited in: Oops, my tests broke the build: An
1932 analysis of Travis CI builds with GitHub
1933 https://peerj.com/preprints/1984/
1935 * GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
1936 Distinct Set of Genomic Properties Over 40 Million Years of
1937 Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
1939 * GNU Parallel was cited in: An Empirical Comparison of Neural
1940 Architectures for Reinforcement Learning in Partially Observable
1942 http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
1944 * GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
1945 Management in Requester-wins Hardware Transactional Memory
1946 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
1948 * GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
1949 Mutation-Induced Stability Changes with Feature-Based Multiple
1951 http://www.sciencedirect.com/science/article/pii/S0022283616000310
1953 * GNU Parallel was cited in: A new orthology assessment method for
1954 phylogenomic data: Unrooted Phylogenetic Orthology
1955 http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
1956 https://github.com/ballesterus/UPhO
1958 * GNU Parallel was cited in: Distinctive Interest Point Selection for
1959 Efficient Near-duplicate Image Retrieval
1960 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
1962 * GNU Parallel was cited in: The Evolution of C Programming Practices:
1963 A Study of the Unix Operating System 1973–2015
1964 https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
1965 thumbnail graphs I have ever seen scattered all over the text)
1967 * GNU Parallel was cited in: Data processing pipeline for serial
1968 femtosecond crystallography at SACLA
1969 http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
1971 * GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
1972 Dynamics http://arxiv.org/pdf/1512.01460.pdf
1974 * GNU Parallel was cited in: Genomic legacy of the African cheetah,
1976 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
1978 * GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
1979 Characterization of IPv6 Network Security Policy
1980 http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
1982 * GNU Parallel was cited in: Comprehensive Annotation of the
1983 Parastagonospora nodorum Reference Genome Using Next-Generation
1984 Genomics, Transcriptomics and Proteogenomics
1985 http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
1987 * GNU Parallel was cited in: How attention influences perceptual
1988 decision making: Single-trial EEG correlates of drift-diffusion
1989 model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
1991 * GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
1992 Using High-Throughput Sequencing Reads
1993 http://repository.upenn.edu/edissertations/1460/
1995 * GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
1996 Processing with Associative Transducers
1997 http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
1999 * GNU Parallel was cited in: PVAIR: Partial Variable Assignment
2000 InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
2002 * GNU Parallel was cited in: Comparative Cladistics: Fossils,
2003 Morphological Data Partitions and Lost Branches in the Fossil Tree
2004 of Life http://opus.bath.ac.uk/43955/
2006 * GNU Parallel was cited in: Shannon: An Information-Optimal de
2007 NovoRNA-Seq Assembler
2008 http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
2010 * GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
2011 Estimation for Coastal Ocean Modeling
2012 https://repositories.lib.utexas.edu/handle/2152/32435
2014 * GNU Parallel was cited in: Computational Design of DNA-Binding
2016 http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
2018 * GNU Parallel was cited in: Reference genotype and exome data from an
2019 Australian Aboriginal population for health-based research
2020 http://www.nature.com/articles/sdata201623
2022 * GNU Parallel was cited in: Do aye-ayes echolocate?
2023 http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
2025 * GNU Parallel was cited in: Functional enrichments of disease
2026 variants across thousands of independent loci in eight diseases
2027 http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
2029 * GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
2030 microbial trait analyzer
2031 http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
2033 * GNU Parallel was mentioned in: Fast Playback Framework for Analysis
2034 of Ground-Based Doppler Radar Observations Using MapReduce
2036 http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
2038 * NCBI blast tutorial
2039 https://github.com/enormandeau/ncbi_blast_tutorial
2041 * Distributed Preservation Made Simple
2042 https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
2044 * Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
2046 * Bug fixes and man page updates.
2051 * :::+ and ::::+ work like ::: and :::: but links this input source to
2052 the previous input source in a --xapply fashion. Contrary to
2053 --xapply values do not wrap: The shortest input source determines
2056 * --line-buffer --keep-order now outputs continously from the oldest
2057 job still running. This is more what you would expect than the
2058 earlier behaviour where --keep-order had no effect with
2061 * env_parallel supports tcsh, csh, pdksh. In fish it now supports
2062 arrays. In csh/tcsh it now supports variables, aliases, and arrays
2063 with no special chars. In pdksh it supports aliases, functions,
2064 variables, and arrays.
2066 * Function exporting on Mac OS X works around old Bash version.
2068 * Better CPU detection on OpenIndiana.
2070 * GNU Parallel was cited in: Automatic Methods for Assisted
2072 https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
2074 * GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
2075 for Natural SUSY with a R-Sneutrino LSP
2076 http://arxiv.org/pdf/1603.06130.pdf
2078 * GNU Parallel was cited in: An Operational Radiometric Landsat
2079 Preprocessing Framework for Large-Area Time Series Applications
2080 https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
2082 * A basic demo of how GNU Parallel can speed up execution of commands
2083 https://www.youtube.com/watch?v=kl8LO2jcvMc
2085 * qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
2087 * FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
2089 * Parallel Processing with Catmandu
2090 https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
2093 http://staypython.blogspot.dk/2016/04/gnu-parallel.html
2095 * Bug fixes and man page updates.
2100 * env_parallel is a function that exports the environment (functions,
2101 aliases, variables, and arrays) to GNU Parallel. Run 'man
2102 env_parallel' for details.
2104 * niceload --prg now searches for substrings if no process with the
2107 * GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
2108 Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
2110 * GNU Parallel was mentioned (with wrong citation) in: Dual Level
2111 Parallel Computations for LargeScale High-Fidelity Database to
2112 Design Aerospace Vehicles
2113 http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
2115 * Using ‘Parallel’ in Unix
2116 https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
2118 * JPEG Squish uses (and co-distributes) GNU Parallel:
2119 http://dantidswell.co.uk/jpeg-squish/
2121 * Bug fixes and man page updates.
2126 * Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
2127 http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
2128 http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
2129 http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
2131 * Daily Quick Tip: parallel
2132 https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
2134 * Downloading a list of URLs
2135 http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
2137 * Using GNU Parallel and ImageMagick for Conversions
2138 http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
2140 * Running bash commands in parallel
2141 http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
2143 * parallel processing in PDAL
2144 https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
2146 * A Million Text Files And A Single Laptop
2147 http://randyzwitch.com/gnu-parallel-medium-data/
2149 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
2150 http://www.slideshare.net/koji_matsuda/gnu-parallel
2152 * Bug fixes and man page updates.
2157 * --sql DBURL uses DBURL as storage for jobs and output. It does not
2158 run any jobs so it requires at least one --sqlworker. DBURL must
2161 * --sqlworker DBURL gets jobs from DBURL and stores the result back to
2164 * --sqlandworker is a shorthand for --sql and --sqlworker.
2166 * --sqlworker requires the output of a single job to fit in memory.
2168 * --results now also saves a file called 'seq' containing the sequence
2171 * If $PARALLEL_ENV is a file, then that file will be read into
2174 * man parallel_tutorial has been given an overhaul.
2176 * --workdir now accepts replacementstrings.
2178 * GNU Parallel was cited in: Possum - A Framework for
2179 Three-Dimensional Reconstruction of Brain Images from Serial
2180 Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
2182 * GNU Parallel was cited in: A Genetic Algorithm for the selection of
2183 structural MRI features for classification of Mild Cognitive
2184 Impairment and Alzheimer's Disease
2185 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
2187 * GNU Parallel was cited in: The Effect of Domain Modeling on
2188 Performance of Planning Algorithms
2189 http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
2191 * Plotting time tables for jobs run by GNU Parallel
2192 https://github.com/ziotom78/plot_joblog
2194 * GNU Parallel was used in: Mission Impossible: you have 1 minute to
2195 analyze the Ebola Genome https://www.biostars.org/p/119397
2197 * GNU Parallel is used in LAST: http://last.cbrc.jp/
2199 * Distributed Log Search Using GNU Parallel
2200 http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
2202 * Bug fixes and man page updates.
2207 * --transfer is now an alias for --transferfile {}.
2209 * --transferfile works like --transfer, but takes an argument like
2210 --return. This makes it possible to combine transferring files
2211 with multiple input sources: parallel -S server --tf {1} wc {2}
2212 {1} ::: * ::: -l -w -c
2214 * total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
2215 $_=total_jobs() =}' ::: {1..50}
2217 * GNU Parallel was cited in: Evolution and Learning in Heterogeneous
2219 http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
2221 * GNU Parallel was cited in: Achieving Consistent Doppler Measurements
2222 from SDO/HMI Vector Field Inversions
2223 http://arxiv.org/pdf/1511.06500.pdf
2225 * Flo uses GNU Parallel: https://github.com/wurmlab/flo
2227 * 使用 GNU parallel 來平行運算
2228 http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
2230 * Bug fixes and man page updates.
2235 * GNU Parallel packaged for CERN CentOS:
2236 http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
2238 * GNU Parallel was cited in: The Outer Solar System Origins Survey:
2239 I. Design and First-Quarter Discoveries
2240 http://arxiv.org/pdf/1511.02895.pdf
2242 * GNU Parallel was cited in: Contrasting genetic architectures of
2243 schizophrenia and other complex diseases using fast
2244 variance-components analysis
2245 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
2247 * GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
2248 using Support Vector Machines
2249 http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
2251 * GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
2252 Using Brownian Dynamics, Molecular Dynamics and Milestoning
2253 http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
2255 * GNU Parallel was cited in: A Detailed Characterization of Errors in
2256 Logic Circuits due to Single-Event Transients
2257 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
2259 * GNU Parallel was cited in: Arabic Speaker Emotion Classification
2260 Using Rhythm Metrics and Neural Networks
2261 http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
2263 * GNU Parallel was cited in: Stride Search: a general algorithm for
2264 storm detection in high resolution climate data
2265 http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
2267 * GNU Parallel was cited in: Decomposing Digital Paintings into Layers
2268 via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
2270 * GNU Parallel was cited in: Structure and evolutionary history of a
2271 large family of NLR proteins in the zebrafish
2272 http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
2274 * GNU Parallel was cited in: Evolution of movement strategies under
2275 competitive interactions
2276 http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
2278 * Automating large numbers of tasks
2279 https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
2281 * Max out your IOPs with GNU Parallel
2282 http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
2284 * Bug fixes and man page updates.
2289 * --plus makes it possible to use {##} as a shorthand for
2290 {= $_=$Global::JobQueue->total_jobs() =} which gives the the number
2291 of jobs to run in total.
2293 * {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
2296 * GNU Parallel is now mostly compatible with lsh
2297 (http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
2298 autossh (http://www.harding.motd.ca/autossh/).
2300 * --workdir ... now also works when run locally.
2302 * GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
2303 regular graph http://arxiv.org/pdf/1509.05933.pdf
2305 * GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
2307 http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html
2309 * GNU Parallel is used in TraitAR:
2310 https://testpypi.python.org/pypi/traitar/0.1.4
2312 * A parallel and fast way to download multiple files
2313 http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html
2315 * Usar GNU Parallel para aumentar el rendimiento de tus scripts
2316 http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/
2318 * Bug fixes and man page updates.
2323 * GNU Parallel was cited in: Flexible Modeling of Epidemics with an
2324 Empirical Bayes Framework
2325 http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382
2327 * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
2328 https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf
2330 * GNU Parallel was cited in: A Scalable Parallel Implementation of
2331 Evolutionary Algorithms for Multi-Objective Optimization on GPUs
2332 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074
2334 * GNU Parallel was cited in: How Can We Measure the Similarity Between
2335 Résumés of Selected Candidates for a Job?
2336 https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job
2338 * GNU Parallel was cited in: Interplay of cell dynamics and epithelial
2339 tension during morphogenesis of the Drosophila pupal wing
2340 http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf
2342 * Third-party selling GNU Parallel T-shirts
2343 http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html
2345 * Joys of gnu parallel
2346 http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/
2348 * Crop and resize images with bash and ImageMagick
2349 https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/
2351 * Three Ways to Script Processes in Parallel
2352 http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/
2354 * What It Looks Like to Process 3.5 Million Books
2355 http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/
2357 * Bug fixes and man page updates.
2362 * If $job->skip() is called in {= =} the job will not be run.
2364 * @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
2365 $_="j" =}' ::: 1 2 3 ::: 4 5 6
2367 * Version of GNU Parallel that uses PostgreSQL as backend
2368 https://github.com/stephen-fralich/parallel-sql/
2370 * SpeedSeq: ultra-fast personal genome analysis and interpretation
2371 http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html
2373 * GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep
2375 * Who actually reads the code?
2376 http://www.fsf.org/blogs/community/who-actually-reads-the-code
2378 * Introduction to GNU Parallel
2379 http://erictleung.com/2015/08/06/intro-to-gnu-parallel/
2381 * ¿Alguien se lee el código?
2382 http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html
2384 * ¿Quién se lee el código fuente?
2385 https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/
2387 * Distribution des traitements avec GNU Parallel
2388 http://blog.inovia-conseil.fr/?p=226#4
2390 * Эксперимент по проверке, читают ли код открытых проектов
2391 http://www.opennet.ru/opennews/art.shtml?num=42718
2393 * 多核心主機搭配 GNU parallel
2394 http://blog.zeroplex.tw/2015/08/gnu-parallel.html
2396 * Bug fixes and man page updates.
2401 * If a record fits in a block, --block only reads upto the size of
2402 --block. If not: --block reads a full --block more.
2404 * Due to widely spread distributions still using --tollef even after a
2405 year of being retired following a year of being obsolete, --tollef
2406 now gives an error unless used with --gnu.
2408 * --nice now uses a perl wrapper instead of the nice command.
2410 * Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
2413 * A parser for GNU Parallel --joblog files:
2414 https://github.com/harryjubb/joblog
2416 * GNU Parallel was cited in: Dynamical formation & scattering of
2417 hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
2418 collisions http://arxiv.org/pdf/1507.03593.pdf
2420 * GNU Parallel was cited in: A Fast Compiler for NetKAT
2421 http://arxiv.org/pdf/1506.06378.pdf
2423 * GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
2425 http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
2427 * GNU Parallel was used in: Somatic mutation calling from the matched
2428 tumor-normal exome-sequencing
2429 http://fafner.meb.ki.se/biostatwiki/somac/
2431 * Parallel Processing from the Command Line
2432 https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
2434 * Using GNU Parallel to speed up network operations
2435 http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
2437 * Crawl faster with "parallel" - but how fast?
2438 http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
2440 * Simultaneously benchmark many URLs with ApacheBench and GNU parallel
2441 https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
2443 * Bug fixes and man page updates.
2448 * --halt has been rewritten completely. You can now combine
2449 percentages with success or fail. See the man page.
2451 * Exit values 102..254 have been removed. 101 means more than 100 jobs
2454 * Killing through --timeout, --memfree, or --halt is now done as a
2457 * --termseq determines which signals are sent when a job is killed.
2459 * An empty argument would previously cause no string to be
2460 inserted. This is now changed to '' being inserted, thus prepending
2461 a space to the output of: parallel echo {} b ::: ''
2463 * $PARALLEL_ENV can now be set to an environment prepending the
2464 command. Used in env_parallel as mentioned in the manpage.
2466 * --retry-failed will retry all failed jobs in a joblog. It will
2467 ignore any command given.
2469 * --ssh and $PARALLEL_SSH can be used to set the command used for
2470 ssh. The command is assumed to behave the same way as ssh.
2472 * --fifo now works in csh, too.
2474 * Q(...) can be used in {= =} to shell quote a string.
2476 * GNU Parallel was cited in: DockBench: An Integrated Informatic
2477 Platform Bridging the Gap between the Robust Validation of Docking
2478 Protocols and Virtual Screening Simulations
2479 http://www.mdpi.com/1420-3049/20/6/9977
2481 * GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
2483 http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
2485 * GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
2486 scattering and resonance calculations
2487 http://arxiv.org/pdf/1505.07691.pdf
2489 * GNU Parallel was cited in: A quantitative assessment of the Hadoop
2490 framework for analyzing massively parallel DNA sequencing data
2491 http://link.springer.com/article/10.1186/s13742-015-0058-5
2493 * GNU Parallel was cited in: A composite genome approach to identify
2494 phylogenetically informative data from next-generation sequencing
2495 http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
2497 * GNU Parallel is used in: taxator-tk
2498 http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
2500 * GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
2502 * GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
2504 * GNU Parallel is used in: A Fingerprint Identification System
2505 https://curve.carleton.ca/system/files/theses/28733.pdf
2507 * Job ad asking for GNU Parallel experience:
2508 http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
2510 * Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
2512 * Bug fixes and man page updates.
2517 * Security: The security issue for --sshlogin + --fifo/--cat has been
2518 fixed. Thereby all issues with
2519 http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
2522 * Security: After further security analysis the issue fixed in
2523 20150422 also fixed the problem for --tmux.
2525 * GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
2526 coordinated transcriptional regulation in gene expression
2528 http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
2530 * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
2531 Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
2532 Metagenomics and RNA-seq
2533 http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
2535 * GNU Parallel was cited in: Sequencing the cap-snatching repertoire
2536 of H1N1 influenza provides insight into the mechanism of viral
2537 transcription initiation
2538 http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
2540 * GNU Parallel was cited in: Genome assembly using Nanopore-guided
2541 long and error-free DNA reads
2542 http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
2544 * GNU Parallel was used (unfortunately with wrong citation) in:
2545 Comparing the CarbonTracker and TM5-4DVar data assimilation systems
2546 for CO2 surface flux inversions
2547 http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
2549 * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
2550 https://bitbucket.org/srp33/gsoa
2552 * A Quick and Neat :) Orchestrator using GNU Parallel
2553 http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
2555 * Execute commands on multiple computers using GNU Parallel (setting
2556 up a cluster on the cheap)
2557 https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
2559 * Functions and GNU parallel for effective cluster load management
2560 http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
2562 * Use parallel processing to save time importing databases
2563 http://drupalsun.com/node/41854
2565 * Run multiple ssh commands in parallel with GNU Parallel
2566 http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
2568 * Importing huge databases faster
2569 https://www.lullabot.com/blog/article/importing-huge-databases-faster
2571 * Parallel? Gnu parallel! https://debian.pro/1834
2573 * Bug fixes and man page updates.
2578 New in this release:
2580 * Security fix. An attacker on the local system could make you
2581 overwrite one of your own files with a single byte. The problem
2582 exist when you use --compress or --tmux or --pipe or --cat or
2583 --fifo. The attacker must figure out the randomly chosen file name
2584 and create a symlink within a time window of 15 ms.
2586 * --shuf will generate all jobs, and shuffle them before running
2587 them. This is useful to get a quick preview of the results before
2588 running the full batch.
2590 * GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
2592 * GNU Parallel was cited in: Scaling Machine Learning for Target
2593 Prediction in Drug Discovery using Apache Spark
2594 https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
2596 * GNU Parallel was cited in: Bayesian inference of protein structure
2597 from chemical shift data https://peerj.com/articles/861/
2599 * GNU Parallel was cited in: Toward Enhanced Metadata Quality of
2600 Large-Scale Digital Libraries: Estimating Volume Time Range
2601 https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
2603 * GNU Parallel was cited in: Experimental study on the Wind Farm
2604 Substation Cable Installation Problem
2605 http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
2607 * GNU Parallel was used in: https://github.com/KAPPS-/landsat-gifworks
2609 * GNU Parallel was used in: https://github.com/exascience/elprep
2611 * GNU Parallel was used in:
2612 http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
2614 * GNU Parallel was used in:
2615 http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
2617 * GNU Parallel was used in: Rapid haploid SNP calling
2618 https://github.com/tseemann/snippy
2620 * Pictures and Metadata
2621 http://www.ozzy.no/2015/02/05/pictures-and-metadata/
2623 * Task automation with bash and parallel
2624 https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
2626 * How To: Speed Up File Transfers in Linux using RSync with GNU
2628 http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
2630 * Mirroring a Git Repository
2631 https://avacariu.me/articles/mirroring-a-git-repository.html
2633 * Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
2634 https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
2637 http://www.zhihu.com/question/29257300
2639 * Bug fixes and man page updates.
2644 New in this release:
2646 * --number-of-cores respects 'taskset' on GNU/Linux.
2648 * --joblog --pipe gives the data send and received in the log.
2650 * GNU Parallel was tested to support 100 GB sized records in --pipe. A
2651 few bugs was fixed to support >2 GB records. It works, but is rather
2654 * GNU Parallel was cited in: RIG: Recalibration and Interrelation of
2655 genomic sequence data with the GATK
2656 http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
2658 * GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
2659 Improving metagenomic analysis with high performance classification
2660 and wide taxonomic attachment
2661 http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
2663 * GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
2664 shaped by declining effective population size
2665 http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
2667 * GNU Parallel was cited in: Evidence for DCO+ as a probe of
2668 ionization in the warm disk surface
2669 http://arxiv.org/pdf/1503.02659.pdf
2671 * GNU Parallel was cited in: De novo assembly and annotation of the
2672 Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
2673 from raw genomic reads and comparative analysis with the yellow
2674 fever mosquito (Aedes aegypti)
2675 http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
2677 * GNU Parallel was cited in: A General Approach to Network
2678 Configuration Analysis
2679 http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
2681 * GNU Parallel was cited in: Scrimer: designing primers from
2683 http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
2685 * GNU Parallel was cited in: Efficient Retrieval of Key Material for
2686 Inspecting Potentially Malicious Traffic in the Cloud
2687 http://sacko.uk/pdf/2015.1.pdf
2689 * GNU Parallel will be presented at Strataconf: Poor Man's Parallel
2691 http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
2693 * GNU Parallel was used in:
2694 https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
2696 * GNU Parallel was used in: https://github.com/martymac/fpart
2698 * GNU Parallel was used in:
2699 https://github.com/hoytak/diabetic-retinopathy-code
2701 * GNU Parallel was used in:
2702 https://github.com/mehmattski/HybSeqPipeline
2704 * GNU Parallel was used in:
2705 http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
2707 * Using GNU Parallel on a Raspberry Pi cluster:
2708 http://www.dcglug.org.uk/cluster-progress/
2710 * An introduction to vector tiling and map reduce in postgis:
2711 http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
2713 * Running scripts in parallel with GNU Parallel:
2714 http://code.jasonbhill.com/2015/03/
2716 * Mahout: Parallelising the creation of DecisionTrees:
2717 http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
2719 * High-Performance Scientific Computing: Running serial jobs in
2721 https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
2723 * Parallel cardinality on your laptop
2724 https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
2726 * Experiments about a better locate using grep
2727 http://a3nm.net/blog/better_locate.html
2729 * Homework with GNU Parallel:
2730 https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
2732 * Parallel - Jobs in Skripten parallelisieren:
2733 https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
2735 * GNU Parallel, czyli 100% użycia procesora
2736 http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
2738 * Bug fixes and man page updates.
2743 * --tmux has gotten a major overhaul.
2745 * GNU Parallel was cited in: RaftLib: A C++ Template Library for High
2746 Performance Stream Parallel Processing
2747 http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
2749 * GNU Parallel was cited in: Quantifying properties of hot and dense
2750 QCD matter through systematic model-to-data comparison
2751 http://arxiv.org/pdf/1502.00339.pdf
2753 * GNU Parallel was cited in: Towards Collaborative Exploration and
2754 Analysis of Big Data from Mars: A Noachis Terra Case Study
2755 http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
2757 * GNU Parallel was used (unfortunately with wrong citation) in:
2758 Performance and Scaling Comparison Study of RDBMS and NoSQL
2760 http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
2762 * GNU Parallel was used (unfortunately without citation) in: Parallel
2763 Implementation of Big Data Pre-Processing Algorithms for Sentiment
2764 Analysis of Social Networking Data
2765 http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
2767 * GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
2768 Ultra-fast personal genome analysis and interpretation
2769 http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
2771 * Zip Folders with GNU Parallel
2772 http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
2774 * Using GNU Parallel with Freesurfer
2775 http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
2777 * GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
2779 * Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
2781 * Bug fixes and man page updates.
2786 * Remote jobs now send stderr (standard error) to stderr (standard
2787 error) instead of stdout (standard output).
2789 * Remote execution command is now packed using base64 encoded
2790 bzip2. This means that big environments (app. 100 KB) can be
2791 transferred. This change makes remote execution alpha quality.
2793 * --semaphoretimeout now takes a negative value. This means give up if
2794 the semaphore is not gotten within the timeout.
2796 * --halt -1 and -2 now means halt if a job succeeds (so the opposite
2799 * --no-keep-order will reverse --keep-order.
2801 * Bash's second fix of shellshock caused --env to break again when
2802 exporting functions. This has been fixed again.
2804 * A semibig refactoring of big functions. All non-trivial functions
2805 are now less than 100 lines. The refactoring makes this release beta
2808 * A description of the design decisions for GNU Parallel can be found
2809 in 'man parallel_design'.
2811 * A bug fix in replacement strings caused rewrite of the replacement
2812 function. This makes use of replacement strings alpha quality.
2814 * GNU Parallel was cited in: Improving Energy and Performance with
2815 Spintronics Caches in Multicore Systems
2816 http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
2818 * GNU Parallel was cited in: Parallel post-processing with MPI-Bash
2819 http://dl.acm.org/citation.cfm?id=2691137
2821 * GNU Parallel was cited in: Distinguishing cause from effect using
2822 observational data: methods and benchmarks
2823 http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
2825 * GNU Parallel was cited in: Data Science at the Command Line
2826 http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
2828 * GNU Parallel was cited in: Resolution of Genetic Map Expansion
2829 Caused by Excess Heterozygosity in Plant Recombinant Inbred
2830 Populations http://www.g3journal.org/content/4/10/1963.full.pdf
2832 * GNU Parallel was cited in: Bayesian Inference of Protein Structure
2833 from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
2835 * GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
2836 in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
2838 * GNU Parallel was cited in: Computação Verde na Camada de Aplicação
2839 https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
2841 * GNU Parallel was cited in: Frameshift alignment: statistics and
2842 post-genomic applications
2843 http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
2845 * GNU Parallel was cited in: Towards Recommender Engineering Tools and
2846 Experiments for Identifying Recommender Differences
2847 http://elehack.net/research/thesis/mde-thesis.pdf
2849 * GNU Parallel was cited in: Speaker Environment Classification Using
2850 Rhythm Metrics in Levantine Arabic Dialect
2851 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
2853 * GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
2854 http://arxiv.org/pdf/1501.02155.pdf
2856 * GNU Parallel was cited in: Allocation Policy Analysis for Cache
2857 Coherence Protocols for STT-MRAM-based caches
2858 http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
2860 * GNU Parallel was cited in: Using Trusted Platform Module for
2861 securing virtual environment access in Cloud
2862 http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
2864 * GNU Parallel was cited in: Weakly Supervised Learning for
2865 Compositional Sentiment Recognition
2866 http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
2868 * GNU Parallel was cited in: Agility and Performance in Elastic
2869 Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
2871 * GNU Parallel was used (unfortunately without citation) in: Large
2872 Scale Author Name Disambiguation in Digital Libraries
2873 http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
2875 * GNU Parallel is used in BEDOPS:
2876 https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
2878 * Job ad asking for GNU Parallel skills:
2879 http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
2881 * GNU Parallel: Open Source For You (OSFY) magazine, October 2013
2883 http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
2885 * Multithreaded Encryption and Compression
2886 http://www.krazyworks.com/multithreaded-encryption-and-compression/
2888 * GNU Parallel on OSX and Linux
2889 https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
2891 * How to build gnu parallel from source on Ubuntu PC?
2892 http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
2894 * GNU parallel for openaddr-process-one
2895 https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
2897 * From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
2899 * Software Development Tooling
2900 http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
2902 * コマンドを並列に実行するGNU parallelがとても便利
2903 http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
2905 * Bug fixes and man page updates.
2910 * Remote systems can be divided into hostgroups (e.g. web and db) by
2911 prepending '@groupname/' to the sshlogin. Multiple groups can be
2912 given by separating groups with '+'. E.g. @web/www1 @web+db/www2
2915 * Remote execution can be restricted to servers that are part of one
2916 or more groups by '@groupname' as an sshlogin. Multiple groups can
2917 be given by separating groups with '+'. E.g. -S @web or -S @db+web
2919 * With --hostgroup you can restrict arguments to certain hostgroups by
2920 appending '@groupname' to the argument. Multiple groups can be
2921 given by separating groups with '+'. E.g. my_web_arg@web
2922 db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
2923 developing a prototype for this.
2925 * GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
2926 Massively Parallel Sequencing Data Analysis using Hadoop
2927 http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
2929 * GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
2930 the Histological Quantification of Whole Slide Images
2931 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
2933 * GNU Parallel was cited in: Exploring a multiprocessor design space
2934 to analyze the impact of using STT-RAM in the memory hierarchy
2935 http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
2937 * Command-Line OCR with Tesseract on Mac OS X
2938 https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
2940 * Bug fixes and man page updates.
2945 * --env was changed to deal with Bash's new way of exporting a function.
2947 * GNU Parallel was cited in: Exclusion of cosmic rays in
2948 protoplanetary disks. II. Chemical gradients and observational
2949 signatures http://iopscience.iop.org/0004-637X/794/2/123/article
2951 * GNU Parallel was cited in: Application of Machine Learning to
2952 Algorithm Selection for TSP
2953 http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
2955 * GNU Parallel was cited in: Performance Models for LTE-Advanced
2957 http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
2959 * GNU Parallel was used (unfortunately without citation) in: De Novo
2960 Insertions and Deletions of Predominantly Paternal Origin Are
2961 Associated with Autism Spectrum Disorder
2962 http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
2964 * GNU Parallel was determined 'popular' by Statistical Analysis of
2965 Popular Open Source Software Projects and Their Communities
2966 http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
2968 * GNU Parallel is demonstrated in: Data Science at the Command Line:
2969 Facing the Future with Time-Tested Tools
2971 * GNU Parallel was covered in a talk at Sydney Perl Mongers group
2972 http://www.openfusion.net/talks/pwp/#24
2974 * GNU Parallel and how to get started with it
2975 http://www.jduck.net/blog/2014/09/30/gnu-paralell/
2977 * Behat/Selenium/Parallel
2978 http://jaffamonkey.com/behat-selenium-parallel/
2980 * Comparing Golang, Scala, Elixir and Ruby for ETL
2981 http://www.dimroc.com/2014/09/29/etl-language-showdown/
2983 * Assemble a list of which of these hosts are up or down
2984 http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
2986 * Running commands on many nodes simultaneously
2987 http://opsfun.wordpress.com/2014/03/31/19/
2989 * Ubuntu 13.04でGNU ParallelをGNUモードで動かす
2990 http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
2992 * Bug fixes and man page updates.
2997 * If the file given as --sshloginfile is changed it will be re-read
2998 when a job finishes though at most once per second. This makes it
2999 possible to add and remove hosts while running.
3001 * Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
3003 * OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
3005 * GNU Parallel was presented at Balti and Bioinformatics "On-Air"
3006 http://youtu.be/UtXlr19xTh8?t=2h5m0s
3008 * Pleiades Plus uses GNU Parallel
3009 https://github.com/ryanfb/pleiades-plus
3011 * Imagemagick and GNU Parallel
3012 http://deepdish.io/2014/09/15/gnu-parallel/
3014 * GNU Parallel (Sebuah Uji Coba)
3015 http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
3017 * GNU Parallel: 并行执行Linux命令
3018 http://blog.csdn.net/xzz_hust/article/details/39183837
3023 * GNU Parallel now uses the same shell it was started from as the
3024 command shell for local jobs. So if GNU Parallel is started from
3025 tcsh it will use tcsh as its shell even if the login $SHELL is
3026 different. For remote jobs the login $SHELL will be used.
3028 * The whole current environment in bash can be copied by using a shell
3029 wrapper function (Search manual for env_parallel).
3031 * --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
3032 {...} {/..} {/...}. The idea being that '+foo' matches the opposite
3033 of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
3034 = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
3036 * GNU Parallel now deals correctly with the combination
3037 rsync-3.1.X-client and rsync-2.5.7-server
3039 * GNU Parallel was cited in: A Web Service for Scholarly Big Data
3040 Information Extraction
3041 http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
3043 * Comparison of the speed of different GNU Parallel versions:
3044 http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
3046 * GNU Parallel was covered in the webcast 2014-08-20: Data Science at
3047 the Command Line http://www.oreilly.com/pub/e/3115
3049 * Distributed processing with GNU parallel
3050 http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
3052 * A Peek into GNU Parallel
3053 http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
3055 * Сборка GNU parallel для CentOS/RHEL
3056 http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
3058 * Bug fixes and man page updates.
3063 * {= perl expression =} can be used as replacement string. The
3064 expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
3065 the string. This makes replacement strings extremely flexible.
3067 * Positional perl expressions (similar to {2}) are given as {=2 perl
3068 expression=} where 2 is the position.
3070 * One small backwards incompatibility: {1}_{2} will replace {2} with
3071 the empty string if there is only one argument. Previously {2} would
3072 have been left untouched.
3074 * Replacement strings can be defined using --rpl. E.g. parallel --rpl
3075 '{.gz} s/\.gz$//' echo {.gz} ::: *.gz
3077 * The parenthesis around {= perl expression =} can be changed with
3080 * --tmux will direct the output to a tmux session instead of
3081 files. Each running jobs will be in its own window.
3083 * --halt 10% will stop spawning new jobs if 10% failed so far.
3085 * GNU Parallel was cited in: bammds: A tool for assessing the ancestry
3086 of low depth whole genome data using multidimensional scaling (MDS)
3087 http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
3089 * GNU Parallel was cited in: Molecular ferroelectric contributions to
3090 anomalous hysteresis in hybrid perovskite solar cells
3091 http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
3093 * GNU Parallel was cited in: Energy Sorghum-a genetic model for the
3094 design of C4 grass bioenergy crops
3095 http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
3097 * GNU Parallel was cited in: Web-scale Content Reuse Detection
3098 www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
3100 * Tell your friends to sign up for the Webcast at 2014-08-20 covering
3101 GNU Parallel: Data Science at the Command Line
3102 http://www.oreilly.com/pub/e/3115
3104 * GNU Parallel all the things!
3105 http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
3107 * Shell command composition and dispatch
3108 http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
3110 * Parallelising plink (or anything else) the easy way
3111 http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
3113 * Easy and cheap cluster building on AWS
3114 https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
3116 * Paralelizace běžných činností v konzoli pomocí GNU Parallel
3117 http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
3119 * [原] Ubuntu 下使用 parallel 命令的注意事项
3120 http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
3122 * 简单的并行, 可使用GNU parallel
3123 http://jerkwin.github.io/2014/06/10/GNU-parallel/
3125 * Bug fixes and man page updates.
3130 * --shebang and --shebang-wrap now works on FreeBSD.
3132 * --pipepart works with --header, --regexp, --cat and --fifo.
3134 * ./configure --disable-documentation will not build documentation.
3136 * {%} works as job slot.
3138 * GNU Parallel was cited in: Energy Efficient, High-speed
3139 Communication in WSNs
3140 https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
3142 * GNU Parallel was cited in: Ferroelectric contributions to anomalous
3143 hysteresis in hybrid perovskite solar cells
3144 http://arxiv.org/pdf/1405.5810.pdf
3146 * Processes Paralleling to Speed up Computing and Tasks Execution in
3148 http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
3150 * Moving / Copying lots of s3 files quickly using gnu parallel
3151 http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
3153 * Speeding up grep log queries with GNU Parallel
3154 http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
3156 * Ubuntu - Gnu parallel - It's awesome
3157 http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
3159 * Export quicklooks with vector overlay using TuiView
3160 http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
3162 * GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
3164 * GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
3166 * Bug fixes and man page updates.
3171 * Use --semaphoretimeout to ignore the semaphore lock after a while.
3173 * {%} introduced as job slot replacement string. It has known bugs.
3175 * --slotreplace changes slot replacement string.
3177 * GNU Parallel officially in Solaris 11.2beta
3178 https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
3180 * GNU Parallel was cited in: A Comparison of Antenna Placement
3181 Algorithms http://abhinavjauhri.com/publications/eap.pdf
3183 * Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
3184 https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
3186 * BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
3188 * Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
3190 * Convert FLAC to MP3 with GNU parallel
3191 http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
3193 * JD Edwards Business Function Documentation
3194 http://www.azertech.net/content/jd-edwards-business-function-documentation
3196 * Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
3198 * How I start a bioinformatics project
3199 http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
3201 * No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
3203 * Bug fixes and man page updates.
3208 * --pipepart is a highly efficient alternative to --pipe if the input
3209 is a real file and not a pipe.
3211 * If using --cat or --fifo with --pipe the {} in the command will be
3212 replaced with the name of a physical file and a fifo respectively
3213 containing the block from --pipe. Useful for commands that cannot
3214 read from standard input (stdin).
3216 * --controlmaster has gotten an overhaul and is no longer
3219 * --env is now copied when determining CPUs on remote system. Useful
3220 for copying $PATH if parallel is not in the normal path.
3222 * --results now chops the argument if the argument is longer than the
3223 allowed path length.
3225 * Build now survives if pod2* are not installed.
3227 * The git repository now contains tags of releases.
3229 * GNU Parallel was cited in: Proactive System for Digital Forensic
3231 http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
3233 * GNU Parallel was cited in: Beyond MAP estimation with the
3234 track-oriented multiple hypothesis tracker
3235 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
3237 * GNU Parallel was cited in: Prokka: rapid prokaryotic genome
3239 http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
3241 * GNU Parallel was used (unfortunately with improper citation) in:
3242 Perspectives in magnetic resonance: NMR in the post-FFT era
3243 http://www.sciencedirect.com/science/article/pii/S1090780713003054
3245 * GNU Parallel is used in https://github.com/cc2qe/speedseq
3247 * Batch XML validation at the command line.
3248 http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
3250 * freebayes-parallel uses GNU Parallel
3251 https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
3253 * Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
3255 * Speeding Up Grep Log Queries with GNU Parallel
3256 http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
3258 * How to run tbss_2_reg in parallel
3259 http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
3261 * GNU parallel example: blastn https://asciinema.org/a/8775
3263 * Iterative DNS Brute Forcing
3264 http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
3266 * Ejecutando comandos en paralelo
3267 http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
3269 * Ejecutando en paralelo en bash (ejemplo con rsync)
3270 http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
3272 * Bug fixes and man page updates.
3277 * Offical package for Alpine Linux now exists:
3278 http://alpinelinux.org/apk/main/x86/parallel
3280 * GNU Parallel was cited in: Estimating uncertainties in statistics
3281 computed from direct numerical simulation
3282 http://dx.doi.org/10.1063/1.4866813
3284 * GNU Parallel was cited in: Vehicle routing problems with time
3285 windows and multiple service workers: a systematic comparison
3286 between ACO and GRASP
3287 http://link.springer.com/article/10.1007/s10100-014-0341-z
3289 * GNU Parallel, quick and easy
3290 http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
3292 * Using Multiple CPU Cores With Command Line Tools
3293 http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
3295 * Batch convert mp3 CBR to VBR
3296 http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
3298 * Running Behat in parallel with Selenium grid
3299 http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
3301 * Git-Mirror per cronjob aktuell halten
3302 https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
3304 * Пишем многопоточный скрипт на bash
3305 http://dafter.ru/duf/howto/130.html
3307 * 如何利用多核CPU来加速你的Linux命令
3308 http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
3310 * Bug fixes and man page updates.
3315 * --tollef has been retired.
3317 * --compress has be redesigned due to bugs.
3319 * Format of --eta and --joblog has changed slightly.
3321 * GNU Parallel was cited in: Speaker Verification and Keyword Spotting
3322 Systems for Forensic Applications
3323 http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
3325 * GNU Parallel was cited in: Scaleable Code Clone Detection
3326 http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
3328 * GNU Parallel was cited in: Clone Detection that scales
3329 http://scg.unibe.ch/archive/masters/Vogt14a.pdf
3331 * GNU Parallel was cited in: Scalable Positional Analysis for Studying
3332 Evolution of Nodes in Networks
3333 http://arxiv-web3.library.cornell.edu/pdf/1402.3797
3335 * GNU Parallel was cited in: Aggregate Characterization of User
3336 Behavior in Twitter and Analysis of the Retweet Graph
3337 http://arxiv.org/pdf/1402.2671v1
3339 * GNU Parallel was used (unfortunately without citation) in: Causal
3340 Network Models for Predicting Compound Targets and Driving Pathways
3342 http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
3344 * GNU Parallel was used (unfortunately without citation) in:
3345 Performance and Energy Efficiency of Common Compression /
3346 Decompression Utilities
3347 http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
3349 * GNU Parallel was used (unfortunately without citation) in: SpringFS:
3350 Bridging Agility and Performance in Elastic Distributed Storage
3351 http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
3353 * GNU Parallel was recommended (without citation) in: Redesigning the
3354 Specificity of Protein-DNA Interactions with Rosetta
3355 http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
3357 * GNU Parallel is co-distributed with RepeatExplorer
3358 http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
3360 * Convert MP3 to a scrolling spectrum waterfall plot video
3361 http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
3363 * PHP wrapper class for the GNU Parallel tool
3364 https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
3366 * Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
3368 * Copias de archivos con rsync y parallel
3369 http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
3371 * Single-Thread-Programme auf Multicore-Rechnern parallelisieren
3372 http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
3374 * Распараллеливаем процессы для ускорения вычислений и выполнения
3375 заданий в Linux http://savepearlharbor.com/?p=210480
3377 * Bug fixes and man page updates.
3382 * GNU Parallel was cited in: On the likelihood of multiple bit upsets
3384 http://arxiv-web3.library.cornell.edu/pdf/1401.1003
3386 * HaploClique uses GNU Parallel
3387 https://github.com/armintoepfer/haploclique
3389 * Scraping NSScreencast
3390 https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
3392 * 30 Cool Open Source Software I Discovered in 2013
3393 http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
3395 * [Unix] 13. The power of doing things in Parallel
3396 http://leetaey.tistory.com/384
3398 * Parallel the execution of a job that read from stdin
3399 http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
3401 * Mon Make à moi (6:38-11:50)
3402 http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
3404 * Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
3405 effizienter in der Shell arbeiten
3406 https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
3408 * Summary of GNU Parallel tutorial
3409 http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
3411 * Bug fixes and man page updates.
3416 * GNU Parallel now has a motto: For people who live life in the
3419 * Detect if the buffer dir $TMPDIR runs out of space. This changes a
3420 central piece of code, making this release alpha quality.
3422 * --keep-order --(n)onall will sort according to the sshlogin.
3424 * Detect the number of CPUs on DEC Tru64.
3426 * GNU sql: --list-tables for sqlite3.
3428 * GNU Parallel was cited in: Variational Message-Passing: Extension to
3429 Continuous Variables and Applications in Multi-Target Tracking
3430 http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
3432 * GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
3434 https://www.duo.uio.no/handle/10852/37431
3436 * GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
3438 http://repositorio.ul.pt/handle/10451/9436
3440 * GNU Parallel was cited in: Diacritization, automatic segmentation
3441 and labeling for Levantine Arabic speech
3442 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
3444 * GNU Parallel was cited in: Investigation of emotion classification
3445 using speech rhythm metrics
3446 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
3448 * GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
3449 and Non-Native Speaking Styles
3450 http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
3452 * GNU Parallel was cited in: Evolutionary optimization of wetlands
3454 http://dl.acm.org/citation.cfm?id=2480400
3456 * GNU Parallel was cited (unfortunately with wrong citation) in:
3457 RDBMS vs NoSQL: Performance and Scaling Comparison
3458 http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
3460 * GNU Parallel was used (without proper citation) in: Comprehensive
3461 Analysis Pipeline for Discovery of Human Genetic Variation
3462 http://www.google.com/patents/US20130311106
3464 * Encrypt and decrypt in parallel with GPG
3465 http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
3467 * Using GNU Parallel to create a SVM classifier
3468 http://ivanyu.me/blog/2013/12/01/parallel/
3470 * Parallel xz compression
3471 http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
3473 * Got CPUs to burn? Put 'em to work with GNU parallel
3474 http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
3477 http://pastebin.com/JmnB9ffq
3479 * Gnu Parallel for fun and profit
3480 https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
3482 * Parallelization of Exploitation
3483 http://rantsideasstuff.com/parallelization-of-exploitation/
3485 * Running assemblies in parallel
3486 https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
3488 * Procesando la contabilidad del PP
3489 http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
3491 * Mon make à moi (French)
3492 http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
3494 * Bug fixes and man page updates.
3499 * A citation notice is printed on stderr only if stderr is a terminal,
3500 the user has not specified --no-notice and the user has not run
3501 --bibtex once. This makes the release alpha quality.
3503 * --compress will compress temporary files. If the output is big and
3504 very compressible this will take up less disk space in $TMPDIR and
3505 possibly be faster due to less disk I/O.
3507 * --compress-program comtrols which program to use for compressing
3510 * --bar show progress as a progress bar compatible with zenity.
3512 * --resume can now be used with --result: Jobs already run will be
3515 * --transfer and --basefile support paths relative to the --workdir by
3516 inserting /./ into the path.
3518 * GNU Parallel was cited in: fastphylo: Fast tools for phylogenetics
3519 http://www.biomedcentral.com/1471-2105/14/334/abstract
3521 * Using GNU parallel
3522 http://davetang.org/muse/2013/11/18/using-gnu-parallel/
3524 * Techlux - GNU - Parallel (German)
3525 https://techlux.de/blog/2013/11/07/gnu-parallel/
3527 * awk, sed, bzip2, grep, wc на всех ядрах
3528 http://vk.com/page-30666517_45528467
3530 * 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
3531 http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
3533 * GNU Parallel (Japanese)
3534 http://jarp.does.notwork.org/diary/201311b.html#20131117
3536 * Bug fixes and man page updates.
3541 * --transfer files with /./ in the path will copy the files relative
3544 * The maximal command length is now cached in a file halfing the
3547 * GNU Parallel was cited in: Investigating speaker gender using rhythm
3548 metrics in Arabic dialects
3549 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
3551 * GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
3552 lastensuojelun asiakaskertomuksista
3553 https://tampub.uta.fi/handle/10024/84978
3555 * Some Additional Useful Bioinformatics Software
3556 http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
3558 * GNU Parallel Example Screen Cast (bil to Geotiff conversion)
3559 http://www.youtube.com/watch?v=PpF27eC7Mys
3561 * Using GNU Parallel to roll-your-own Map Reduce!
3562 http://www.rankfocus.com/hello-world/
3564 * Use multiple CPU Cores with your Linux commands
3565 http://www.rankfocus.com/use-cpu-cores-linux-commands/
3567 * Using GNU Parallel at HPC @ Uni.lu
3568 https://hpc.uni.lu/users/use_cases/
3570 * Scaling up with parallelization
3571 https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
3573 * How to teach yourself to be a technical tester
3574 http://infiniteundo.com/post/62421363463/qa-toc
3576 * Faster Rasters For All
3577 http://2013.foss4g.org/conf/programme/presentations/52/
3579 * Optimizing translated file downloads
3580 http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
3582 * EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
3583 http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
3585 * Best Practices for Amazon EMR
3586 http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
3588 * Computing checksums for backup
3589 https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
3591 * Un exemplu de utilizare a programului GNU parallel
3592 http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
3595 http://www.slideshare.net/drakeguan/part1-23705978
3597 * なんか気持ちよかです Gnu Parallel
3598 http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
3600 * Bug fixes and man page updates.
3605 * PDF-files of documentation is now included.
3607 * Cloning at warp speed 100 VMs in 1 minute using one command line
3608 http://www.beebotech.com.au/tag/command-line/
3610 * Calcul Quebec's introduction to GNU Parallel
3611 https://wiki.calculquebec.ca/w/GNU_parallel
3613 * Brincando com o GNU parallel
3614 http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
3616 * GNU Parallelで並列処理を行う
3617 http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
3619 * Bug fixes and man page updates.
3624 * A tutorial showing much of GNU Parallel's functionality. Spend an
3625 hour walking through the tutorial. Your commandline will love you
3626 for it. man parallel_tutorial
3628 * --line-buffer will buffer output on line basis. --group keeps the
3629 output together for a whole job. --ungroup allows output to mixup
3630 with half a line coming from one job and half a line coming from
3631 another job. --line-buffer fits between these two; it prints a full
3632 line, but will allow for mixing lines of different jobs.
3634 * --record-env records all variables and functions set. Useful to
3635 record the normal environment before using --env _.
3637 * --env _ exports all functions and variables to the remote server
3638 except for the ones recorded.
3640 * New signing key. Due to recommendations from NIST
3641 http://www.keylength.com/en/4/ the signing key was changed from
3642 1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
3644 * Agalma: an automated phylogenomics workflow
3645 http://arxiv.org/pdf/1307.6432
3647 * Job ad asking for GNU Parallel expertise
3648 http://seattle.craigslist.org/est/sof/4006079352.html
3650 * Transient Beowulf Clustering with GNU Parallel and SSHfs
3651 http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/
3653 * Aligning to unique regions
3654 http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/
3656 * Top 10 scripting tricks for basic bioinformatics
3657 http://students.washington.edu/bowmanjs/wordpress/?p=873
3659 * Using GNU Parallel to speed up and simplify data analyzes
3660 http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/
3662 * Compression of files in parallel using GNU parallel
3663 http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html
3665 * Using GNU Parallel with Amazon
3666 media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
3668 * Some useful comments on GNU Parallel
3669 https://news.ycombinator.com/item?id=6209767
3671 * Using GNU Parallel to count reads mapping to genes for multiple BAMs
3672 http://drduanehassane.com/blog/sequencing-resources
3674 * TimeMachineっぽいバックアップスクリプト
3675 http://rio.tc/2013/07/timemachine-1.html
3677 * GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
3678 http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab
3680 * Bug fixes and man page updates.
3685 * --round-robin with --pipe will write all blocks to already running
3688 * --env can now transfer Bash function for remote execution. That is
3691 * GNU Parallel was used (unfortunately with improper citation) in:
3692 Understanding the Impact of E-Commerce Software on the Adoption of
3693 Structured Data on the Web
3694 http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1
3696 * GNU Parallel was used (unfortunately with improper citation) in:
3697 CWI at TREC 2012, KBA track and Session Track
3698 http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf
3700 * Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
3701 Interactions through Optimal Wall Shaping.
3702 http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653
3704 * Using GNU parallel to convert images.
3705 http://www.brunokim.com.br/blog/?p=18
3707 * A quick way to parallelize.
3708 http://timotheepoisot.fr/2013/07/08/parallel/
3710 * GNU Parallel 20130522 ('Rana Plaza') 发布,并行作业执行.
3711 http://www.open-open.com/news/view/371301
3713 * Quite a few bug fixes and man page updates.
3718 * --xapply now recycles arguments if an input source has more
3719 arguments than others.
3721 * The sleep time between jobs is now both increased and decreased
3724 * 10 seconds installation check the signature using GnuPG if GnuPG is
3727 * Developer job asking for GNU Parallel expertise.
3728 http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central
3730 * A small utility program to run youtube-dl in parallel.
3731 https://github.com/dlh/youtube-dl-parallel
3733 * Parallelizing Freesurfer:
3734 http://blog.cogneurostats.com/?p=148
3736 * Bug fixes and man page updates.
3741 * --ctrlc is now default if --pipe is not used; thus making it
3742 possible to kill remotely started jobs simply by pressing Ctrl-C.
3744 * --timeout 200% now means kill jobs that take more than twice the
3745 time of the median run time of a job.
3747 * Jobs are now distributed round robin when having mulitiple
3748 --sshlogin instead of filling up one --sshlogin at a time.
3750 * niceload: darwin version of --io --mem --swap. Thanks to Anders F
3753 * Bug fixes and man page updates.
3758 * 10 seconds installation: wget -O - pi.dk/3 | sh
3760 * HPUX CPU/core detection. Thanks to Javier Tarradas.
3762 * CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
3764 * --ctrlc will send SIGINT to tasks running on remote computers and
3767 * --load now uses 'ps' to see immediately see the number of running
3768 processes instead of 'uptime' thus making --load react much faster.
3770 * Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
3771 bugs. Some of these required quite extensive changes making this
3772 release beta quality.
3774 * --retries works with --onall.
3776 * The new --load computation now works on FreeBSD 7.
3778 * --nice works under tcsh.
3780 * GNU Parallel is officially supported in NetBSD.
3781 http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html
3783 * GNU Parallel is accepted for openSUSE.
3784 http://software.opensuse.org/package/gnu_parallel
3786 * GNU Parallel can be installed under Microsoft Windows (CygWin).
3787 http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx
3789 * Excuses for not installing GNU Parallel.
3790 http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html
3792 * Job advert that requires GNU Parallel competence.
3793 http://versium.com/about/careers/
3795 * Parallelizing Batch Jobs for Fun and Profit.
3796 http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
3798 * Processing Transcription Start Sites(TSS) for the entire Mouse genome.
3799 http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/
3801 * GNU parallel is used throughout Scrimer.
3802 http://scrimer.readthedocs.org/en/latest/
3804 * GNU Parallel helped making public documents searchable.
3805 http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html
3807 * Identifying big movie files (German).
3808 http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/
3810 * Bug fixes and man page updates.
3815 * --resume works with --pipe.
3817 * --resume-failed will go through --joblog, redo the failed jobs and
3818 then continue like --resume.
3820 * Negative positional arguments count from the end: {-1} means the
3821 last argument, {-2} the second to last.
3823 * NetBSD CPU detection.
3825 * --blocksize increases exponentially if it smaller than a full
3828 * Processing n-line records (--pipe -L n) is now much faster.
3830 * --tollef is obsoleted after discussion on the mailing list.
3832 * GNU Parallel is the highest rated tool on:
3833 http://www.biostars.org/show/tools/?sort=votes&since=all%20time
3835 * GNU Parallel was loved during FSFE's #ilovefs campaign.
3836 http://fsfe.org/news/2013/news-20130212-01.en.html
3838 * Using GNU Parallel with s3cmd (Japanese).
3839 http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html
3841 * Intro to GNU Parallel (Chinese).
3842 http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/
3844 * Bug fixes and man page updates.
3849 * --sshdelay Delay starting next ssh by secs seconds. GNU parallel
3850 will pause secs seconds after starting each ssh. secs can be less
3853 * Official OpenBSD port:
3854 http://ftp.openbsd.org/ports/sysutils/parallel/
3856 * Official DragonFlyBSD package:
3857 http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/
3859 * Post about niceload in Hungarian:
3860 http://commandline.blog.hu/2013/01/02/niceload
3862 * 自炊スキャンデータをKobo Gloに最適化
3863 http://interstadial.wordpress.com/2013/01/20/
3865 * GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
3866 http://oshiire.to/archives/1686
3868 * Bug fixes and man page updates.
3873 * --shebang-wrap makes is possible to parallelize scripts by putting
3874 parallel in the shebang line (the first #! line in scripts).
3876 * --delay puts in a delay after starting each job. Useful to avoid
3877 raceconditions and thundering herd problems.
3879 * --results now uses / as separator instead of TAB and thus creates
3880 subdirs. Thanks to Drew Frank.
3882 * parallel: OpenBSD CPU detection. Thanks to Michał Markowski.
3884 * niceload --sensor allows for negative numbers to signify a lower
3885 number means the limit is lower.
3887 * niceload --prg suspend a named program that is already running.
3889 * niceload multiple --pid suspend process ids that are already running.
3891 * Convertir des images avec find et imagemagick
3892 http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html
3894 * Bug fixes and man page updates.
3899 * niceload --sensor makes it possible to use a program to control if a
3900 program should be suspended.
3902 * GNU Parallel was part of the justification for Nordic Free Software
3904 https://fsfe.org/news/2012/news-20121112-01.html
3906 * Dateien schneller packen und konvertieren mit GNU parallel
3907 http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel
3909 * Processing images from Lunar Reconnaissance Orbiter Narrow Angle
3910 Camera http://lunokhod.org/?p=774
3912 * GNU Parallel is used in types2: Type and Hapax Accumulation Curves
3913 http://www.cs.helsinki.fi/u/josuomel/types2/
3915 * GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
3916 PCA-based system for Dictionary Learning and Encoding for Robust
3918 http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
3919 http://www.cse.iitm.ac.in/~mrsri/ppca.pdf
3921 * Mapreduce avec parallel, cat et une redirection
3922 http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection
3924 * GNU Parallel for Large Batches of Small Jobs
3925 https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf
3927 * GNU Parallel used in black belt tip (8:50-10:12)
3928 https://aws.amazon.com/apac/awspodcast/episode20/
3930 * Bug fixes and man page updates.
3935 * --results structures output files so they can be imported using
3936 Pandas (http://pandas.pydata.org/). Useful when doing simulations to
3937 select output from some arguments.
3939 * Use --env to transfer environment variables through ssh to remote
3942 * GNU Parallel is accepted for Ubuntu Quantal.
3943 http://packages.ubuntu.com/quantal/parallel
3945 * GNU Parallel was requested for OpenSUSE (go vote!)
3946 https://features.opensuse.org/314461
3948 * Kneth's Korner: Map/Reduce and GNU Parallel
3949 http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html
3951 * Blog post in Japanese by Siguniang.
3952 https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
3953 (Siguniang mentions the logo is called 'The Cafe Wall Illusion')
3954 http://www.michaelbach.de/ot/ang_cafewall/index.html
3956 * GNU Parallel, where have you been all my life?
3957 http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
3959 * Reference-free ddRADseq analysis tools uses GNU Parallel.
3960 https://github.com/brantp/rtd#readme
3962 * When bash just isn’t quick enough.
3963 https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
3965 * Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
3966 http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
3968 * GNU Parallel Notes.
3969 http://xed.ch/help/parallel.html
3971 * Bug fixes and man page updates.
3976 * Due to a bugfix the main flow has changed. Making this release beta
3979 * Parallel Proxy Scraper & Checker Tool
3980 https://www.youtube.com/watch?v=iXCeR_XsP6o
3982 * Bug fixes and man page updates.
3987 * GNU Parallel was presented at Chiang Mai Bar Camp
3988 http://barcampchiangmai.org/
3990 http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/
3992 * I don't always max out all my CPUs, but when I do, I do it with GNU
3994 http://memegenerator.net/instance/22638454
3996 * Bug fixes and man page updates.
4001 * '-L n --pipe' will use records of n lines. This is useful when
4002 processing data that have fixed records with a fixed number of
4005 * --filter-hosts will remove down hosts. For each remote host: check
4006 that login through ssh works. If not: do not use this host.
4007 Currently you can not put --filter-hosts in a profile, $PARALLEL,
4008 /etc/parallel/config or similar. This is because GNU Parallel uses
4009 GNU Parallel to compute this, so you will get an infinite loop. This
4010 will likely be fixed in a later release.
4012 * --pipe now uses fork() instead of busy wait. The performance should
4013 be better on computers with >10 cores while remaining the same on
4014 computers with few cores.
4016 * GNU Parallel will be represented at Chiang Mai Bar Camp.
4017 http://barcampchiangmai.org/
4019 * Indexing Big Data on Amazon AWS: The Screencast
4020 (Check out his T-shirt at 18:40-21:00).
4021 http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/
4023 * biotoolbox uses GNU Parallel.
4024 https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper
4026 * Spiceweasel uses GNU Parallel.
4027 https://github.com/mattray/spiceweasel
4029 * GNU Parallel part of The Administrators Challenge.
4030 http://challenge.twistedrack.com/questions/qs3.php
4032 * Finding Oldest Firefox Code using GNU Parallel.
4033 http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/
4035 * Bug fixes (quite a few for remote job running) and man page updates.
4040 * Timings in --joblog now with milliseconds.
4042 * Thesis using GNU Parallel (correctly cited; hooray!).
4043 http://scholarworks.sjsu.edu/etd_projects/222/
4046 http://www.perzl.org/aix/index.php?n=Main.Parallel
4048 * Prokka uses GNU Parallel.
4049 http://bioinformatics.net.au/prokka-manual.html
4051 * GNU Parallel was presented at MUUG.
4052 http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/
4054 * Blog post: Manipulating many or large files with GNU parallel.
4055 http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html
4057 * Blog post: Running commands in parallel using bash.
4058 http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html
4060 * Blog post in Hungarian.
4061 http://commandline.blog.hu/2012/05/03/gnu_parallel
4063 * Popularity of GNU Parallel in Debian explodes.
4064 http://qa.debian.org/popcon-graph.php?packages=parallel
4066 * Bug fixes and man page updates.
4071 * A race condition bug caused restructuring of a central piece of the
4072 code. Thus this release of GNU Parallel should be considered beta
4075 * sql --dbsize will now list sizes of all databases if given no
4078 * GNU Parallel is now in Debian Unstable.
4079 apt-get install parallel
4081 * Article: Computational and experimental analyses of
4082 retrotransposon-associated minisatellite DNAs in the soybean genome.
4083 http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf
4085 * Blog post: GNU parallel - the best thing since sliced bread.
4086 https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/
4088 * Blog post: GNU Parallel makes everything faster.
4089 http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html
4091 * Blog post (German): Howto: GNU parallel.
4092 http://d24m.de/2012/04/05/howto-gnu-parallel/
4094 * Blog post: Running in Parallel
4095 http://interactivity.ifactory.com/2012/04/running-in-parallel/
4097 * 20000 watched the first intro video.
4100 * The first 5 have received their GNU Parallel merchandise
4101 https://www.gnu.org/software/parallel/merchandise.html
4103 * Bug fixes and man page updates.
4108 * Parallel Process Database Dumps.
4109 http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html
4111 * Using GNU Parallel to process images from Mars.
4112 http://lunokhod.org/?p=468
4114 * Using GNU Parallel with bzgrep.
4115 http://filip.rembialkowski.net/did-you-know-gnu-parallel/
4117 * Bug fixes and man page updates.
4122 * --workdir . will use the current working dir. If the current working
4123 dir is beneath your home dir, the value . is treated as the relative
4124 path to your home dir. This means that if your home dir is different
4125 on remote computers (e.g. if your login is different) the relative
4126 path will still be relative to your home dir.
4128 * A texinfo file is now generated from the POD file using pod2texi.
4130 * The bioinformatics article "Fast large-scale clustering of protein
4131 structures using Gauss integrals" mentions GNU Parallel. They forgot
4132 to add the reference. Please remember --bibtex if you use GNU
4133 Parallel in an article.
4134 http://bioinformatics.oxfordjournals.org/content/28/4/510.short
4136 * The first supporter received his merchandise. Did you order yours?
4137 https://www.gnu.org/software/parallel/merchandise.html
4139 * How to use GNU Parallel with samtools.
4140 http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html
4142 * How to use GNU Parallel for vacuuming PostgreSQL tables.
4143 http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/
4145 * Converting e-books with Calibre and GNU Parallel.
4146 http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/
4148 * Using GNU Parallel for tailing logfiles from multiple servers.
4149 http://silviud.blogspot.com/2012/02/shell-parallel-processing.html
4151 * Bug fixes and man page updates.
4156 * --header : uses the first input line as column names and you can
4157 then use {colname} as a replacement string in the command. This also
4158 works with multiple :::'s.
4160 * --header <regexp> matches a header as a regular expression and
4161 repeats the header for each block with --pipe.
4163 * --resume resumes from the last unfinished job. Useful if you stop
4164 GNU Parallel and restart it later with the same arguments.
4166 * niceload now propagates exit status correctly.
4168 * Show your support for GNU Parallel. For a limited time you can get a
4169 GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
4170 https://www.gnu.org/software/parallel/merchandise.html
4172 * Options -g -B -T -U -W -Y are retired as warned 6 months ago.
4174 * GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
4175 to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128
4177 * Article in IEEE Software on GNU Parallel. Thanks to Diomidis
4178 Spinellis. http://www.spinellis.gr/blog/20110911/
4180 * An article on Narwhal which uses GNU Parallel. They forgot to add
4181 the reference. Please remember --bibtex if you use GNU Parallel in
4183 http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf
4185 * Blog post on using GNU Parallel to speed up BLAST queries:
4186 http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html
4188 * Video showing Wake-on-LAN with GNU Parallel.
4189 https://www.youtube.com/watch?v=0mB-yIyKFLQ
4191 * Using GNU Parallel with Solr.
4192 http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html
4194 * First job ad including GNU Parallel:
4195 http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex
4197 * Bug fixes and man page updates.
4202 * --timeout will now kill grandchildren.
4204 * Interview in Hacker Public Radio.
4205 http://hackerpublicradio.org/eps.php?id=0860
4207 * Blog post in Chinese.
4208 http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html
4210 * Bug fixes and man page updates.
4215 * GNU Parallel package for Fedora.
4216 https://admin.fedoraproject.org/pkgdb/acls/name/parallel
4218 * Using GNU Parallel with Mozilla cross referencing.
4219 https://blog.mozilla.com/it/2011/11/15/mxr-improvements/
4221 * Neat flash presentation of GNU Parallel.
4222 http://prezi.com/0nq74b2elgtx/about-gnu-parallel/
4224 * How to create tar files of dirs in parallel.
4225 https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/
4227 * Article in Admin Network&Security by Ben Martin.
4228 http://www.admin-magazine.com/HPC/Articles/GNU-Parallel
4230 * Blog post in Polish.
4231 http://blog.tiger.com.pl/2011/01/05/gnu-parallel/
4233 * Blog post on using GNU Parallel of Mac OS X.
4234 http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/
4236 * Blog post in English by researcher.
4237 http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/
4239 * Blog entry in Chinese.
4240 http://blog.csdn.net/tossense/article/details/6889026
4242 * Blog entry in Japanese on managing many servers.
4243 http://hiroakis.com/blog/2011/11/13/gnu-parallel/
4245 * GNU Parallel is now part of ppbs.
4246 http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html
4248 * How to use GNU Parallel with MCX.
4249 http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster
4251 * Bug fixes and man page updates.
4256 * --tag prepends lines with the argument(s). If used with --(n)onall
4257 the line will be prepended with the sshlogin instead.
4259 * --shellquote does not run the command but quotes it using \'s.
4260 Useful for making quoted composed commands.
4262 * --profile can now be repeated merging multiple profiles.
4264 * --bibtex now gives the BibTeX entry.
4265 Thanks to Aleksandr Levchuk for testing.
4267 * Makefile for simple .deb package.
4268 cd packager/debian; make
4270 * sql: --list-databases lists the databases.
4272 * GNU Parallel officially in Fedora 16
4273 http://www.spinics.net/lists/fedora-package-announce/msg67130.html
4275 * Blog post on recompression FLAC audio.
4276 http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html
4278 * The most complex use of ::: I have seen so far.
4279 http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html
4281 * Example of using GNU Parallel with sudo.
4282 http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files
4284 * Use wget and gnu parallel to download mp3s at rocket speed.
4285 http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at
4287 * First CV referring to GNU Parallel.
4288 http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602
4290 * Cartwright labs usage of GNU Parallel.
4291 http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck
4293 * Bug fixes and man page updates.
4298 * --timeout implemented so that slow commands can be killed
4300 * CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.
4302 * Example of a parallel webcrawler in the man page.
4304 * Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
4305 http://wirtel.be/2011/07/15/rsync_parallel/
4307 * Blog post in Japanese.
4308 http://dminor11th.blogspot.com/2011/08/gnu-parallel.html
4310 * Blog post about optimizing JPEGs. Thanks to Thomas Jost.
4311 http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/
4313 * Bug fixes and man page updates.
4318 * niceload: --hard will suspend a program if a limit is reached - as
4319 opposed to just slowing the program down.
4321 * niceload: --soft will slow the program down - as opposed to
4322 suspending the program completely.
4324 * niceload: --run-io will slow down a program if disk io goes above a
4327 * niceload: --run-load will slow down a program if loadaverage goes
4328 above a certain limit.
4330 * niceload: --run-mem will slow down a program if free memory goes
4331 below a certain limit.
4333 * niceload: --run-noswap will slow down a program if the computer is
4336 * niceload: --start-io, --start-load, --start-mem, --start-noswap will
4337 defer starting a program until the system is below the limit.
4339 * --io, --load, --mem, and --noswap sets both --run-* and --start-*.
4341 * niceload got a major rewrite and is now object oriented.
4343 * GNU Parallel was presented at Nordic Perl Workshop 2011.
4344 http://conferences.yapceurope.org/npw2011/talk/3416
4346 * Blog post about zcat and GNU Parallel. Thanks to Dr. John.
4347 http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/
4349 * 2 blog posts in Japanese. Thanks to Negima.
4350 http://d.hatena.ne.jp/negima1976/20110607/1307412660
4351 http://d.hatena.ne.jp/negima1976/20110628/1309252494
4353 * Blog post for bioinformatics. Thanks to Chris Miller.
4354 http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/
4356 * Bug fixes and man page updates.
4361 * --onall will run all the jobs on all the computers. This is useful
4362 for systemadinistrators having multiple servers.
4364 * --nonall runs like --onall but reads no arguments from stdin
4365 (standard input), so is possible to do:
4366 parallel --nonall -S computer1,computer2 uptime
4368 * Context replace now works with multiple input sources:
4369 parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c
4371 * --noswap do not start a job on a server that is swapping.
4373 * Article: Parallel processing without Hadoop!
4374 http://www.solutionhacker.com/parallel-processing-without-hadoop/
4376 * Article in Linux Magazine (Spanish). Thanks to Ben Martin.
4377 http://www.linux-magazine.es/issue/67/
4379 * First blog post in Korean. Thanks to 민병국.
4380 http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#
4382 * Blog post in Japanese. Thanks to Naoya Nakazawa.
4383 http://www.sssg.org/blogs/naoya/archives/2003
4385 * Blog post in English. Thanks to Dagon.
4386 http://hekate.homeip.net/2011/05/29/
4388 * Bug fixes and man page updates.
4393 * Multiple ::: can be put on the command line and will be treated
4394 similar to contents from multiple -a's.
4396 * ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
4397 refer to inputs from the different input sources.
4399 * --xapply is now needed to get xapply's behaviour of reading one line
4400 from each of the input sources.
4402 * Multiple input sources will cause all combinations of arguments from
4403 the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
4404 a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
4407 * Implemented {//} for the input line with the basename removed (dirname).
4409 * New video showing the new ::: and :::: input sources.
4410 http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc
4412 * GNU Parallel now has a logo.
4413 http://www.gnu.org/software/parallel/logo.png
4415 * Article about GNU SQL in USENIX Magazine ;login: (print)
4416 http://www.usenix.org/publications/login/2011-04/
4418 * Using GNU Parallel with EC2. Thanks to Kevin Wu.
4419 http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in
4421 * Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
4422 http://d.hatena.ne.jp/ichii386/20110426
4424 * Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
4425 http://www.hollenback.net/index.php/MacportsParallel
4427 * Robert from Echo One discusses using processes instead of threads:
4428 http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/
4430 * How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
4431 http://www.kevinstock.org/2011/04/using-the-ri-cluster/
4433 * Short article about using GNU Parallel with lame:
4434 http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion
4436 * Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
4437 http://blog.clouder.jp/archives/001140.html
4439 * BBC Research & Development uses GNU Parallel:
4440 http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml
4442 * Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
4443 http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/
4445 * Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
4446 http://derek.chezmarcotte.ca/?p=286
4448 * Bug fixes and man page updates.
4453 * {#} now works as an alias for $PARALLEL_PID.
4455 * --eta now estimates way more accurately.
4457 * CPU detection code for AIX thanks to Christian Netrwal.
4459 * --joblog contains exitcode.
4461 * Thanks to Ævar Arnfjörð Bjarmason for reading my code.
4463 * GNU Parallel was presented at:
4464 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4465 - OSAA.dk, Aarhus, 2011-04-12
4467 * Blog entry in Japanese. Thanks to Riywo.
4468 http://blog.riywo.com/2011/04/19/022802
4470 * Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
4471 J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel
4473 * First example of using GNU Parallel in Hebrew. Thanks to omry.
4476 * Intro video got past 10000 hits.
4477 http://www.youtube.com/watch?v=OpaiGYxkSuQ
4479 * Bug fixes and man page updates.
4484 * --tollef to be switch compatible with Tollef's parallel. This will
4485 cause -l to mean --load, and the argument separator will be --
4488 * --gnu will force GNU Parallel to behave like GNU Parallel even if
4491 * Site wide config file: /etc/parallel/config
4493 This should solve the issue with some packagers renaming GNU
4494 Parallel to gparallel to avoid the naming conflict.
4496 By putting --tollef in the site wide config file you can deinstall
4497 Tollef's parallel and install GNU Parallel instead without any
4498 change for users or scripts. This is useful for packagers that
4499 currently rename GNU Parallel or simply do not distribute GNU
4500 Parallel because the command name conflicts with Tollef's parallel.
4502 * -L 0 -n 0, and -N 0 implemented. They will read one argument,
4503 but insert 0 arguments on the command line. Useful if you just want
4504 to run the same command with the same arguments a number of times.
4506 * GNU Parallel is now in Fink. Thanks to Jesse Alama.
4507 http://pdb.finkproject.org/pdb/package.php/parallel
4509 * Opscode Cookbook for Chef. Thanks to Joshua Timberman.
4510 https://github.com/opscode/cookbooks/tree/master/gnu_parallel
4512 * Man page examples translated into Japanese. Thanks to Koshigoe.
4513 http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13
4515 * GNU Parallel will be presented at:
4516 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
4517 - OSAA.dk, Aarhus, 2011-04-12
4519 * Video of presentation from FSCONS 2010-11-07. The presenter was
4520 _really_ hoarse that day (Something to do with loads of alcohol the
4521 night before). http://vimeo.com/20838834
4523 * Review with examples in German. Thanks to M. Nieberg.
4524 http://kenntwas.de/2011/linux/gnu-parallel/
4526 * A review of the --pipe option in German. Thanks to Mathias Huber.
4527 http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten
4529 * A small example of grepping maillogs. Thanks to François Maillet.
4530 http://www.francoismaillet.com/blog/?p=399
4532 * Using GNU Parallel instead of xargs. Thanks to James Cuff.
4533 http://blog.jcuff.net/2011/02/on-train-ride-in.html
4535 * Bug fixes and man page updates.
4540 * --pipe splits piped data into blocks. Each block is piped to a
4541 program for processing. The piping and the programs will be run in
4542 parallel. Useful if the data you want to process is data for a
4543 program and not arguments.
4545 * --blocksize sets the blocksize in bytes for --pipe. The blocksize is
4546 approximate. It can deviate as much as the size of one record.
4549 * --recstart sets the string matching the start of a
4550 record. Default is "".
4552 * --recend sets the string matching the end of a
4553 record. Default is '\n'. To specify none use --recend "".
4555 If both --recstart and --recend are set, the end of a record must be
4556 followed immediately by a start of a record. This is useful if
4557 either recend or recstart can occur in the middle of a record.
4559 * --remove-rec-sep removes the string matched by --recstart and
4562 * --regexp will make GNU Parallel treat --recstart and --recend as
4563 regular expressions.
4565 * --output-as-files will put the output of the programs into files and
4566 instead of giving the output GNU Parallel will output the name of
4569 * -N if used with --pipe sets the number of records to read.
4571 * New video showing --pipe at
4572 http://www.youtube.com/watch?v=1ntxT-47VPA
4574 * GNU Parallel was presented at FOSDEM.
4576 * Article in USENIX Magazine ;login: (print)
4577 http://www.usenix.org/publications/login/2011-02/
4579 * GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
4580 https://www.ohloh.net/p/gnu-parallel
4582 * Advanced recursive example. Thanks to Ruarí Ødegaard.
4583 http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu
4585 * Small example on using GNU Parallel through 0install (German).
4586 http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/
4588 * Bug fixes and man page updates.
4593 * --joblog makes a simple log of completed jobs.
4595 * -X now spreads arguments between job slots when reaching last
4596 argument. Use -j1 to avoid this.
4598 * People on the email list have voted -j+0 to be the new default
4601 * First review in Polish. Thanks to Patryk Krawaczyński.
4602 http://nfsec.pl/root/2458
4604 * Review in Spanish (in print).
4605 https://www.linux-magazine.es/issue/67/moreinfo.html
4607 * Review in English. Thanks to Brian Gough.
4608 http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/
4610 * Review in French. Thanks to Denis Dordoigne.
4611 http://linuxfr.org/2010/12/29/27715.html
4613 * Review in Spanish.
4614 http://gufete.net/index.php?entry=entry110116-200022
4616 * Article with advanced recursive example. Thanks to Ruarí Ødegaard
4617 http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel
4619 * Use case for memcache.
4620 http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/
4622 * Bug fixes and man page updates.
4627 * GNU niceload is now part of GNU Parallel. GNU niceload slows down a
4628 program if the load average is above a certain limit.
4630 * Implemented --tmpdir to buffer standard output and standard error in
4633 * Implemented --load to wait until the load is below a limit before
4634 starting another job on that computer.
4636 * Implemented --nice set the niceness of jobs running both locally and
4639 * Implemented --dry-run to print the job without running it.
4641 * Implemented --tty as the old default of assigning a tty to the first
4642 job causes problems.
4644 * Review with focus on clusters. Thanks to Taylor Gillespie
4645 http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html
4647 * Review with focus on protein similarity.
4648 http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel
4650 * Review in Spanish.
4651 http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux
4653 * Quite a few bug fixes and man page updates.
4658 * Implemented {/} for the input line with the path removed (basename).
4660 * Implemented {/.} for the input line with extension and path removed
4663 * Output from --progress is now sent to standard error instead of
4666 * --eta was broken and counted down from 0. Now fixed.
4668 * Standard output and standard error are flushed after every job so if
4669 standard output does not end with a newline it will still be grouped
4670 with the rest of standard output.
4672 * --command, -c, --file, and -f are now removed as options. They were
4673 never used in practice.
4675 * GetOptionsFromArray rewritten to work with old Perl libraries.
4677 * The file COPYING now contains the GNU General Public License 3
4679 * Major rewrite to make the code more object oriented and easier to
4680 maintain in the future.
4685 * Using -j myfile the number of jobs can be changed while GNU Parallel
4686 is running simply by changing the content of myfile.
4688 * Implemented --profile to use different .parallel/config for
4689 different situations.
4691 * Ugly newlines in $PARALLEL and .parallel/config are no longer
4692 needed. Instead you have to use \ in front of special shell
4695 * --workdir puts the files transferred to remote machines in a
4696 specified directory.
4698 * $PARALLEL_PID is set to the process id of GNU Parallel.
4700 * $PARALLEL_SEQ is set to the sequence number of the job.
4702 * -v now only shows the command to run. Use -v -v to show the
4705 * Slow spawning error is now only a warning.
4707 * If stdin is a tty and input is read from stdin you now get a
4710 * GNU sql: \n and \x0a in arguments is replaced with newline.
4712 * Patch for Debian package and spelling mistakes. Thanks to Rogério
4713 Brito <rbrito at ime dot usp dot br>
4715 * Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
4716 palardy at gmail dot com>
4718 * FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>
4720 * Pardus package. Thanks to Fethican Coşkuner
4721 <fethicanc at gmail dot com>
4723 * First review in Chinese. Thanks to 曾義峰:
4724 http://antbsd.twbbs.org/~ant/wordpress/?p=2876
4726 * First review in print:
4727 http://www.linux-magazine.com/Issues/2010 Nov 2010
4729 * First review in Spanish:
4730 http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando
4732 * First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
4734 http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html
4736 * Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
4737 http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life
4739 * 5000 views of the intro video:
4740 http://www.youtube.com/watch?v=OpaiGYxkSuQ
4742 * As usual a bunch of bugfixes and more usage examples in the man
4745 * GNU Parallel was presented at FSCONS 2010-11-07:
4746 http://www.fscons.org/fs/gnu-parallel Hopefully the
4747 video will be online soon.
4752 * See GNU Parallel live at FSCONS 2010-11-07:
4753 http://www.fscons.org/fs/gnu-parallel
4755 * Untested Debian and xUbuntu packages available through OpenSUSE
4757 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
4759 * Using --retries a job will be retried on another computer if it
4760 fails. This is useful if some jobs fail for no apparent reason (such
4761 as network failure).
4763 * BSD xargs -o (open /dev/tty) is now default for the job running in
4764 foreground. Useful for interactive commands like:
4765 ls | parallel -Xuj1 vi
4767 * GNU sql now supports SQLite.
4769 * Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.
4771 * GNU sql now support --list-tables
4773 * Alias for DBURL can contain '?query' part with %-quoting.
4778 * Using --shebang GNU Parallel can be used as the parser for a script.
4779 E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
4782 * First community generated bugfixes
4784 * Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
4785 at altlinux dot org>
4787 * Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
4788 <sunfreeware at gmail.com>
4790 * Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
4791 available through OpenSUSE build service:
4792 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
4794 * Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
4795 http://www.andrew-mcfague.com/linux/utilities-linux/
4796 commands-every-serious-nix-user-should-know/#parallel
4798 * First 1000 views of the intro video
4800 * sql - a small script to access sql bases from the command line which
4801 is a handy companion to parallel --colsep
4806 * Counting semaphore functionality: start a job in the background. If
4807 N jobs are already running, wait for one to complete. Examples:
4808 sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
4809 sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait
4811 * With --colsep a table can be used as input. Example:
4812 cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}
4814 * --trim can remove white space around arguments.
4816 * --sshloginfile '..' means use ~/.parallel/sshloginfile
4818 * Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
4821 * OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
4824 * NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>
4826 * Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
4827 Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>
4829 * Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
4830 Thanks to Phil Sung <psung at alum dot mit dot edu>
4835 * Arguments can now be given on the command line. Example:
4836 parallel bzip2 ::: *.txt
4838 * xapply like functionality. Example:
4839 parallel diff {1} {2} :::: filelist1 filelist2
4840 parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2
4842 * Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>
4844 * Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
4847 * -L -l -n -s now implies -X unless -m is set
4852 * New video showing the new options.
4853 http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
4854 http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/
4856 * 100% options complete with xargs. All options for xargs can now be
4857 used in GNU Parallel - even the more exotic.
4859 * --basefile for transferring basedata. When running jobs on remote
4860 computers --basefile will transfer files before the first jobs is
4861 run. It can be used to transfer data that remains the same for each
4862 job such as scripts or lookup tables.
4864 * --progress shows progress. To see how many jobs is running on each
4865 server use --progress. It can be turned on even after GNU Parallel
4868 * --eta shows estimated time left in seconds.
4870 * --halt-on-error stops if an error occurs. GNU Parallel will default
4871 to run all jobs - even if some of them fail. With --halt-on-error
4872 GNU Parallel can ignore errors, wait for the currently running jobs
4873 to finish, or stop immediately when an error occurs.
4878 * GNU Parallel now has support for running jobs on remote machines
4880 * Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
4881 http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech
4886 * GNU Parallel is now official GNU software