5 * Experimental simpler job flow control.
7 * 時間がかかるコマンドを GNU parallel で 並列実行する
8 https://qiita.com//grohiro/items/4db3fa951a4778c5c479
10 * Bug fixes and man page updates.
15 * env_parallel.fish: --session support (alpha quality)
17 * GNU Parallel was cited in: High-throughput sequencing of murine
18 immunoglobulin heavy chain repertoires using single side unique
19 molecular identifiers on an Ion Torrent PGM
20 https://doi.org/10.18632/oncotarget.25493
22 * GNU parallel in Japanese Wikipedia
23 https://ja.wikipedia.org/wiki/GNU_parallel
25 * Outils de paramétrisation des tâches: lots de tâches, GNU Parallel
26 https://www.eventbrite.ca/e/inscription-outils-de-parametrisation-des-taches-lots-de-taches-gnu-parallel-et-bqtools-midi-conference-de-50271076142
28 * Bug fixes and man page updates.
33 * Minix is supported again.
35 * Updated graph showing GNU Parallel's overhead per job for each
36 version. https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
38 * Intro to Computing at CARC includes introduction to GNU Parallel
39 http://carc.unm.edu/education--training/workshops-and-seminars.html
41 * Fast-GBS uses GNU Parallel https://bitbucket.org/jerlar73/fast-gbs/wiki/Home
43 * Belgium at 10 m resolution in July 2018 http://www.cesbio.ups-tlse.fr/multitemp/?p=14116
45 * Bug fixes and man page updates.
50 * parset sets exit code.
52 * How to install GNU Parallel
53 https://www.techrepublic.com/videos/how-to-install-gnu-parallel/
55 * Bug fixes and man page updates.
58 >>>>>>> 8286e771ec57e60ee17aee87741fe96790880db7
61 * The quoting engine has been changed. Instead of using \-quoting GNU
62 Parallel now uses '-quoting in bash/ash/dash/ksh. This should
63 improve compatibility with different locales. This is a big change
64 causing this release to be alpha quality.
66 * The CPU calculation has changed. By default GNU Parallel uses the
67 number of CPU threads as the number of CPUs. This can be changed to
68 the number of CPU cores or number of CPU sockets with
69 --use-cores-instead-of-threads or --use-sockets-instead-of-threads.
71 * The detected number of sockets, cores, and threads can be shown with
72 --number-of-sockets, --number-of-cores, and --number-of-threads.
74 * env_parallel now support mksh using env_parallel.mksh.
76 * GNU Parallel is distributed as part of Snippy
77 https://github.com/tseemann/snippy
79 * GNU Parallel: Ejecutar comandos simultáneamente en Linux
80 https://esgeeks.com/gnu-parallel-ejecutar-comandos-simultaneo-linux/
82 * Parallel download genomic data with GNU-Parallel
83 https://digibio.blogspot.com/search/label/GNU-Parallel
87 * Bug fixes and man page updates.
89 >>>>>>> 8286e771ec57e60ee17aee87741fe96790880db7
93 * Deal better with multibyte chars by forcing LC_ALL=C.
95 * GNU Parallel was introduced in Pincount Podcast:
96 https://pincountpodcast.com/episodes/29.html
98 * GNU Parallel was shown on Danish national news for 1.7 seconds: dr.dk
100 * How to run Linux commands simultaneously with GNU Parallel
101 https://www.techrepublic.com/article/how-to-run-commands-simultaneously-with-gnu-parallel/#ftag=RSS56d97e7
103 * Easy parallelization with GNU parallel
104 http://mpharrigan.com/2016/08/02/parallel.html
106 * GNU Parallel for mutlithreaded tasks
107 http://slhogle.github.io/2016/gnu-parallel/
109 * A GNU Parallel Clustering Demo
110 https://www.crowdsupply.com/ground-electronics/circumference/updates/a-gnu-parallel-clustering-demo
112 * 使用 GNU Parallel 提高 Linux 命令行执行效率
113 https://linux.cn/article-9718-1.html
115 * Ejecutando tareas desde consola simultáneamente con GNU Parallel
116 https://poesiabinaria.net/2018/06/ejecutando-tareas-desde-consola-simultaneamente-gnu-parallel/
118 * Cómo ejecutar varias tareas simultáneamente en el terminal con GNU
120 https://www.ubuntizando.com/como-ejecutar-varias-tareas-simultaneamente-en-el-terminal-con-gnu-parallel/
122 * GNU Parallel 활용 가이드 http://genoglobe.kr/kribb/gnu_parallel
124 * Bug fixes and man page updates.
129 * --tty allows for more programs accessing /dev/tty in parallel. Some
130 programs require tty access without using it.
132 * env_parallel --session will record names in current environment in
133 $PARALLEL_IGNORED_NAMES and exit. It is only used with env_parallel,
134 and can work like --record-env but in a single session.
136 * 35 day course: Linux shell scripting and text processing for big
137 data https://comquest.in/training
139 * How To Use Your Entire CPU In Bash With Parallel
140 https://bash-prompt.net/guides/parallell-bash/
142 * An easy way to run parallel jobs on Stampede2
143 https://blog.uta.edu/xus/2017/09/29/an-easy-way-to-run-parallel-jobs-on-stampede2/
145 * Get more done at the Linux command line with GNU Parallel
146 https://opensource.com/article/18/5/gnu-parallel
148 * Save Time with Modern Search Techniques
149 https://www.sans.org/summit-archives/file/summit-archive-1524582079.pdf
151 * GNU Parallel: haz más cosas simultáneamente en el terminal
152 https://blog.desdelinux.net/gnu-parallel-haz-mas-cosas-simultaneamente-en-el-terminal/
154 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
155 https://www.slideshare.net/koji_matsuda/gnu-parallel
157 * Bug fixes and man page updates.
162 * --csv makes GNU Parallel parse the input sources as CSV. When used
163 with --pipe it only passes full CSV-records.
165 * Time in --bar is printed as 1d02h03m04s.
167 * Optimization of --tee: It spawns a process less per value.
169 * The GNU Parallel 2018 book is now available:
170 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
172 * Modern pentest tricks for faster, wider, greater engagement (15)
173 https://conference.hitb.org/hitbsecconf2018ams/materials/D1%20COMMSEC%20-%20Thomas%20Debize%20-%20Modern%20Pentest%20Tricks%20for%20Faster,%20Wider,%20Greater%20Engagements.pdf
175 * Running many serial jobs efficiently
176 https://userinfo.surfsara.nl/documentation/running-many-serial-jobs-efficiently
178 * GNU Parallel: как сохранить результаты нескольких команд для
179 переменной? http://fliplinux.com/gnu-parallel-6.html
181 * Running Multiple Commands in Parallel on a GNU Linux
182 https://www.youtube.com/watch?v=sHpTywpb4_4
184 * Klaatu covers the documentation of GNU parallel in episode 12x15
185 http://gnuworldorder.info/
187 * Bug fixes and man page updates.
192 * niceload -p can now take multiple pids separated by comma
194 * --timeout gives a warning when killing processes
196 * --embed now uses the same code for all supported shells
198 * --delay can now take arguments like 1h12m07s
200 * Parallel. Straight from your command line
201 https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee
203 * GNU Parallel was used in POAP-Parallelized Open Babel & Autodock
204 suite Pipeline https://github.com/inpacdb/POAP
206 * Pi Cluster Parallel Script First Fire
207 https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/
209 * How to Restore MySQL Logical Backup at Maximum Speed
210 https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/
212 * Bug fixes and man page updates.
217 * --embed makes it possible to embed GNU parallel in a shell
218 script. This is useful if you need to distribute your script to
219 someone who does not want to install GNU parallel.
221 * Parallelize Your Large Batches of Small Jobs
222 https://amito.me/2018/02/Parallelize-Your-Large-Batches-of-Small-Jobs/
224 * Klaatu expounds upon xargs and talks GNU parallel in episode 12x6
225 http://gnuworldorder.info/
227 * How to use parallel to speed up your work
228 https://mike42.me/blog/how-to-use-parallel-to-speed-up-your-work
230 * Transient compute clustering with GNU Parallel and sshfs
231 https://dennismungai.wordpress.com/2018/02/06/transient-compute-clustering-with-gnu-parallel-and-sshfs/
233 * Useful Examples of ffmpeg and GNU parallel on the command-line
234 https://dennismungai.wordpress.com/2018/02/06/useful-examples-of-ffmpeg-and-gnu-parallel-on-the-command-line/
236 * Data Science at the Command Line (Chapter 8.3)
237 https://www.datascienceatthecommandline.com/
239 * Bug fixes and man page updates.
244 * bash / 병렬 https://code.i-harness.com/ko/docs/bash/2a1a
246 * 15分钟神器gnu parallel 入门观止
247 http://www.ezilin.com/2018/01/15gnu-parallel.html
249 * How To Run Multiple Commands In Parallel on Linux
250 https://www.slashroot.in/how-run-multiple-commands-parallel-linux
252 * Bug fixes and man page updates.
257 * env_parset for ash, dash, ksh, sh, zsh
259 * Automatically create hostgroups if argument ends in @sshlogin
261 * Tips for running jobs on your VM
262 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
264 * Node-local scheduling
265 https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
267 * GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
269 * GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
272 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
274 * Bug fixes and man page updates.
279 * Using GNU Parallel to speed up Google Cloud Infrastructure
281 https://medium.com/@pczarkowski/using-gnu-parallel-to-speed-up-google-cloud-infrastructure-management-53e5c555ec05
283 * What is gnu parallel
284 http://wiki.chpc.ac.za/howto:bioinformatics:gnu-parallel
286 * Parallel, Scripts, Clusters, & Easy Use
287 https://chiefio.wordpress.com/2017/11/10/parallel-scripts-clusters-easy-use/
289 * Bug fixes and man page updates.
294 * Initial support for XDG Base Directory $XDG_* environment variables.
296 * Validating half a million TIFF files. Part Two
297 https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
299 * Turing data science class: Cluster computing
300 https://www.turing.ac.uk/events/masterclass-cluster-computing/
302 * Butlin:Unix for Bioinformatics - advanced tutorial
303 https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
305 * พยายามใช้ CPU ให้ครบทุก CORE
306 https://veer66.wordpress.com/2017/09/02/use-multi-core/
308 * Examples on using GNU Parallel
309 https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
311 * Bug fixes and man page updates.
316 * Use '--limit myprog' to make a dynamic job limit. Just return 0 to
317 spawn another job, 1 to not spawn another job, and 2 to kill the
320 * PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
323 * Download all of humble bundle books in parallel
324 https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel
326 * Bug fixes and man page updates.
331 * --line-buffer no longer uses tempfiles. This is faster and makes it
332 possible for a single process to output more data than there is free
335 * Vote for GNU Parallel's community ads on
336 http://meta.unix.stackexchange.com/a/4356/2972
337 http://meta.askubuntu.com/a/16750/22307
338 http://meta.serverfault.com/a/9040/45704
340 * Edit images with GNU Parallel and ImageMagick
341 https://fedoramagazine.org/edit-images-parallel-imagemagick/
343 * Running Bash Commands in Parallel
344 https://dzone.com/articles/running-bash-commands-in-parallel-1
346 * Today I Learned: GNU parallel, plate tectonics
347 https://medium.com/@nornagon/today-i-learned-gnu-parallel-plate-tectonics-9fcf24045e63
349 * GNU Parallel Tutorial
350 https://www.upf.edu/web/sct-sit/gnu-parallel-tutorial
352 * Validating half a million TIFF files
353 http://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
355 * Blender and GNU Parallel
356 https://www.blendernation.com/2017/08/16/blender-gnu-parallel/
358 * Quick Introduction to GNU Parallel
359 https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
361 * A simple distributed animation render example using GNU Parallel
362 https://gitlab.com/skororu/scripts
364 * Do stuff on things, in parallel
365 http://blogs.fluidinfo.com/terry/2017/08/05/do-stuff-on-things-in-parallel/
367 * Bash And GNU Parallel NGS Bidniz
368 http://ino.pm/outreach/presentations/2014/03/genomics-wranglers/index.html
370 * Using for loop vs Gnu parallel for BLAST
371 http://www.ettemalab.org/using-for-loop-vs-gnu-parallel-for-blast/
373 * 并行rsync https://gxnotes.com/article/175866.html
375 * Bug fixes and man page updates.
380 * Vote for GNU Parallel's community ads on
381 http://meta.unix.stackexchange.com/a/4356/2972
382 http://meta.askubuntu.com/a/16750/22307
383 http://meta.serverfault.com/a/9040/45704
385 * GNU Parallel was cited in: Hayabusa: Simple and Fast Full-Text
386 Search Engine for Massive System Log Data
387 http://dl.acm.org/citation.cfm?id=3095788
389 * コマンドの並列化を行える『GNU parallel』の個人的使い方まとめ
390 https://orebibou.com/2017/07/%E3%82%B3%E3%83%9E%E3%83%B3%E3%83%89%E3%81%AE%E4%B8%A6%E5%88%97%E5%8C%96%E3%82%92%E8%A1%8C%E3%81%88%E3%82%8B%E3%80%8Egnu-parallel%E3%80%8F%E3%81%AE%E5%80%8B%E4%BA%BA%E7%9A%84%E4%BD%BF%E3%81%84/
392 * How to play and play with thousands of digitized 78rpm records
393 https://blog.archive.org/2017/07/10/how-to-play-and-play-with-78rpm-record-transfers/
395 * 并行一个for循环 https://gxnotes.com/article/130363.html
397 * RFC 8142: GeoJSON Text Sequences
398 https://sgillies.net/2017/05/18/rfc-8142-geojson-text-sequences.html
400 * Git auto fetch script I run every day
401 https://lukas.zapletalovi.com/2017/07/git-auto-fetch-script-i-run-every-day.html
403 * cores, cpus and threads
404 http://crazyhottommy.blogspot.de/2017/07/cores-cpus-and-threads.html
406 * Bug fixes and man page updates.
411 * The command line can now contain \257 (Macron) or UTF characters
414 * Vote for GNU Parallel's community ads on
415 http://meta.unix.stackexchange.com/a/4356/2972
416 http://meta.askubuntu.com/a/16750/22307
417 http://meta.serverfault.com/a/9040/45704
419 * Graph for overhead for 1000 jobs has been updated. It remains
420 steadily at 3.5 ms per job on a 1.7 GHz machine
421 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
423 * GNU Parallel was cited in: The topology of the directed clique
424 complex as a network invariant
425 https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
427 * GNU Parallel was cited in: Improving Optical Character Recognition
428 of Finnish Historical Newspapers with a Combination of Fraktur &
429 Antiqua Models and Image
430 http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
432 * GNU Parallel was cited in: Parallel Execution of Structural Mechanic
433 Tasks with Use of Small Supercomputers
434 http://www.sciencedirect.com/science/article/pii/S1877705817324815
436 * GNU Parallel was cited in: Integration of a Multilingual Preordering
437 Component into a Commercial SMT Platform
438 https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
440 * Tips For Running Jobs On Your VM
441 https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
443 * Speed up ML model development with GNU Parallel
444 https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
446 * Parallelizing a Python Function for the Extremely Lazy
447 http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
450 http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
452 * Bug fixes and man page updates.
457 * --timeout can now use s=second,m=minute,h=hour,d=day.
459 * --dr is now an alias for --dry-run.
461 * Vote for GNU Parallel's community ads on
462 http://meta.unix.stackexchange.com/a/4356/2972
463 http://meta.askubuntu.com/a/16750/22307
464 http://meta.serverfault.com/a/9040/45704
466 * GNU Parallel was cited in: Feature Detection in Visual Cortex during
467 Different Functional States
468 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
470 * GNU Parallel was cited in: From genotype to phenotype: inferring
471 relationships between microbial traits and genomic components
472 https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
474 * GNU Parallel was cited in: Designing fecal microbiota transplant
475 trials that account for differences in donor stool efficacy
476 http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
478 * GNU Parallel was cited in: Assessing the predictability of
479 anharmonic vibrational modes at the example of hydroxyl groups - ad
480 hoc construction of localised modes and the influence of structural
481 solute–solvent motifs
482 http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
484 * GNU Parallel was cited in: Mapping Environmental Influences on
486 ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
488 * GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
489 Glass Transition in One Dimension
490 https://arxiv.org/pdf/1704.02257.pdf
492 * GNU Parallel was cited in: Online Automatic Post-editing for MT in a
493 Multi-Domain Translation Environment
494 https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
496 * GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
497 moderate-resolution reflective solar bands against MODIS Aqua over
499 http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
501 * GNU Parallel was cited in: Scattering Networks: Efficient 2D
502 Implementation And Application To Melanoma Classification
503 http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
505 * GNU Parallel was cited in: Genome-scale detection of positive
506 selection in 9 primates predicts human-virus evolutionary conflicts
507 http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
509 * GNU Parallel is used in: Creates a speech dataset for deep learning
510 https://github.com/jupiter126/Create_Speech_Dataset
512 * GNU Parallel is used in: Parse and process the demixing secrets
513 dataset (DSD100) https://github.com/faroit/dsdtools
515 * First glance at the gnu parallel utility
516 https://ibiscybernetics.com/blog/2017-04-05.html
518 * Installing parallel from source
519 https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
521 * How to run command or code in parallel in bash shell under Linux or
523 https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
525 * Parallel Serial Jobs Using GNU Parallel
526 http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
528 * GNU Parallel or How to list millions of S3 objects
529 https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
531 * Which Is the Best Tool for Copying a Large Directory Tree Locally?
532 http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
534 * Bug fixes and man page updates.
539 * --halt supports done in addition to success and fail.
541 * parset will set variables in parallel in Bash.
543 * Perl 5.6 on Irix is no longer supported.
545 * Vote for GNU Parallel's community ads on
546 http://meta.unix.stackexchange.com/a/4356/2972
547 http://meta.askubuntu.com/a/16750/22307
548 http://meta.serverfault.com/a/9040/45704
550 * GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
551 from transcriptomic data using MapReduce
552 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
554 * GNU Parallel was cited in: StrAuto: automation and parallelization
555 of STRUCTURE analysis
556 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
558 * GNU Parallel was cited in: Trespassing the Boundaries: Labeling
559 Temporal Bounds for Object Interactions in Egocentric Video
560 https://128.84.21.199/pdf/1703.09026.pdf
562 * GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
565 https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
567 * Find and xargs and parallel
568 http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
570 * Quick Introduction to GNU Parallel
571 https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
573 * Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
575 * Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
577 * Bug fixes and man page updates.
582 * --rpl can now take arguments by adding '(regexp)' in the replacement
585 * Vote for GNU Parallel's community ads on
586 http://meta.unix.stackexchange.com/a/4356/2972
587 http://meta.askubuntu.com/a/16750/22307
588 http://meta.serverfault.com/a/9040/45704
590 * GNU Parallel was cited in: shmlast: An improved implementation of
591 Conditional Reciprocal Best Hits with LAST and Python
592 https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
594 * GNU Parallel was cited in: Prediction of relativistic electron flux
595 in the Earth’s outer radiation belt at geostationary orbit by
597 https://link.springer.com/article/10.1134/S0016793217010108
599 * GNU Parallel was cited in: Higher likelihood of multiple bit-flips
600 due to neutron-induced strikes on logic gates
601 https://arxiv.org/pdf/1612.08239.pdf
603 * GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
604 Calculation of Hybrid Classical and Quantum Free Energies
605 http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
607 * GNU Parallel was cited in: Learning string distance with smoothing
608 for OCR spelling correction
609 https://link.springer.com/article/10.1007/s11042-016-4185-5
611 * GNU Parallel was cited in: The Breakdown of String Perturbation
612 Theory for Many External Particles
613 https://arxiv.org/pdf/1611.08003.pdf
615 * GNU Parallel was cited in: Operations Research Applications in
617 https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
619 * GNU Parallel was cited in: Parallel Computing: GNU Parallel
620 http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
622 * Stig Sandbeck Mathisen: Change All The Passwords (Again)
623 http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
625 * Trabalhando como Paralelismo no Bash usando o GNU Parallel
626 http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
628 * GNU parallel と SQL*Loader 組み合わせ実行例
629 https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
631 * Bug fixes and man page updates.
636 * env_parallel now supports /bin/sh, ash, dash.
638 * --tee will pipe all data to all jobs. Used with --pipe/--pipepart
639 and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
640 {} | wc -l' ::: {0..9}
642 * If --results {replstr} ends in /: save in dir. Otherwise save as
643 file. Example: parallel --results {} echo {} ::: a b c
645 * Vote for GNU Parallel's community ads on
646 http://meta.unix.stackexchange.com/a/4356/2972
647 http://meta.askubuntu.com/a/16750/22307
648 http://meta.serverfault.com/a/9040/45704
650 * GNU Parallel was cited in: Low-delay forwarding with multiple
651 candidates for VANETs using multi-criteria decision making
652 http://ieeexplore.ieee.org/document/7835961/
654 * GNU Parallel was cited in: An Integrated Simulator and Dataset that
655 Combines Grasping and Vision for Deep Learning
656 https://arxiv.org/pdf/1702.02103.pdf
658 * GNU Parallel was cited in: A Bayesian model selection approach for
659 identifying differentially expressed transcripts from RNA sequencing
660 data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
662 * GNU Parallel was cited in: The impact of copy number variation on
663 gout, and the apple genome
664 https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
666 * GNU Parallel was cited in: Reaction rates for reaction-diffusion
667 kinetics on unstructured meshes
668 http://aip.scitation.org/doi/10.1063/1.4975167
670 * GNU Parallel was cited in: Modeling prediction error improves power
671 of transcriptome-wide association studies
672 http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
674 * GNU Parallel was cited in: Proper experimental design requires
675 randomization/balancing of molecular ecology experiments
676 http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
678 * GNU Parallel was cited in: Experiment-based thermal micromagnetic
679 simulations of the magnetization reversal for ns-range clocked
681 http://aip.scitation.org/doi/full/10.1063/1.4974021
683 * GNU Parallel was cited in: The University of Edinburgh’s systems
684 submission to the MT task at IWSLT
685 http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
687 * Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
689 * Job: DevOps Engineer/Senior Systems Administrator in New York, New
691 http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
693 * Training in GNU Parallel:
694 https://www.carc.unm.edu/education-outreach/workshops--training/
696 * Training in GNU Parallel:
697 http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
699 * Batch Convert Images from PNG to JPEG
700 http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
702 * Accelerating Oxford Nanopore Basecalling
703 http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
705 * parallel и imagemagick в loop на bash
706 https://www.linux.org.ru/forum/development/13190247
708 * Bug fixes and man page updates.
718 * sql now uses a temporary credentials file for MySQL to avoid
721 * --sqlmaster and --sqlworker have been reworked.
723 * --sqlworker only reads from the DBURL: any command and any arguments
726 * --sqlmaster +DBURL will append different commands to the DBURL and
729 * If --results contain a replacement string, no tree structure with
730 args will be generated.
732 * --fg --tmux or --fg --tmuxpane will connect to the tmux.
734 * GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
735 Classification, and Measurement
736 https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
738 * GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
739 Social and Solitary Wild Bees Detects Associations with Eukaryote
740 Parasites and New Viruses
741 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
743 * GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
744 of Metric Temporal Logic
745 http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
747 * 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
749 * GNU Parallel as a queuing system:
750 http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
752 * AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
754 http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
755 and https://youtu.be/PlTuJx4VnGw?t=30m16s
757 * Bug fixes and man page updates.
762 * --results foo.csv will save output as a CSV-file. Can be directly
763 imported into R or LibreCalc.
765 * When using --pipepart a negative --block-size is not interpreted as
766 a block size but as the number of blocks each jobslot should have.
768 * --sqlmaster/--sqlandworker will append jobs to the DBURL if the
769 DBURL is prepended with +.
771 * GNU Parallel was cited in: A cloud-based workflow to quantify
772 transcript-expression levels in public cancer compendia
773 http://www.nature.com/articles/srep39259
775 * GNU Parallel was cited in: Determination of crystal structures of
776 proteins of unknown identity using a marathon molecular replacement
777 procedure: Structure of Stenotrophomonas maltophilia
778 phosphate-binding protein
779 https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
781 * GNU Parallel was cited in: Large-scale benchmarking reveals false
782 discoveries and count transformation sensitivity in 16S rRNA gene
783 amplicon data analysis methods used in microbiome studies
784 http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
786 * GNU Parallel was cited in: Decomposing Images into Layers via
788 https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
790 * Transient compute clustering with GNU Parallel and sshfs
791 https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
793 * 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
794 http://www.tecmint.com/linux-image-conversion-tools/
796 * All's Fair in Love and Distributed Storage
797 http://cohesity.com/blog/alls-fair-love-distributed-storage/
799 * How can I use GNU Parallel to run a lot of commands in parallel
800 https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
802 * 정해영의 블로그 - JEONG Haeyoung's blog
803 http://blog.genoglobe.com/2016/11/gnu-parallel.html
805 * 在Linux下将PNG和JPG批量互转的四种方法
806 http://os.51cto.com/art/201612/524182.htm
808 * Running in parallel http://tomkimpson.com/howto/gnuparallel/
810 * Taco Bell Parallel Programming
811 https://giorgos.sealabs.net/taco-bell-parallel-programming.html
813 * Bug fixes and man page updates.
818 * --record-env can now be used with env_parallel for bash, ksh, pdksh,
821 * GNU Parallel was cited in: An improved implementation of Conditional
822 Reciprocal Best Hits with LAST and Python
823 https://pypi.python.org/pypi/shmlast/1.0.3
825 * GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
827 http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
829 * GNU/Parallel – Run multiple commands simultaneously
830 https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
832 * Tutorial: Parallel web scraping with CasperJS and GNU Parallel
833 http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
835 * Bug fixes and man page updates.
840 * First command no longer gets stdin as it causes unpredictable issues.
842 * GNU Parallel was cited in: Efficiently parallelized modeling of
843 tightly focused, large bandwidth laser pulses
844 https://arxiv.org/pdf/1609.08146v1.pdf
846 * How to crunch lots of geodata in parallel
847 http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
849 * GNU parallel is my new toaster
850 http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
852 * Bug fixes and man page updates.
857 * parcat - cat files or fifos in parallel
859 * GNU Parallel was cited in: Velocity: A Netflow Based Optimized
861 https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
863 * GNU Parallel was cited in: Viral deep sequencing needs an adaptive
864 approach: IRMA, the iterative refinement meta-assembler
865 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
867 * Using GNU Parallel and ImageMagick for Conversions
868 https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
870 * Training in GNU Parallel
871 http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
873 * Chown Ceph OSD data directory using GNU Parallel
874 http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
876 * FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
878 * dDocent: A guide to ddRAD sequencing
879 https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
881 * SOFTWARE GNU Parallel
882 http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
884 * Bug fixes and man page updates.
889 * --tmuxpane opens jobs in panes in tmux. Useful if you want to
890 monitor progress of less than 100 simultaneous jobs.
892 * --linebuffer now treats \r as line ending, too.
894 * Perl changes forces use of floats to be given with leading zero, so
897 * --xapply renamed to --link.
899 * Support for pdksh will fade until someone packages it for Ubuntu 16.
901 * GNU Parallel was cited in: Exome sequencing of geographically
902 diverse barley landraces and wild relatives gives insights into
903 environmental adaptation
904 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
906 * GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
907 Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
909 * Easy parallelization with GNU parallel
910 http://mpharrigan.com/2016/08/02/parallel.html
912 * Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
914 http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
917 http://www.manitou-mail.org/blog/2016/07/parallel-import/
919 * Large file batch processing using NodeJs and GNU Parallel
920 http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
922 * Bug fixes and man page updates.
927 * env_parallel is now ready for wider testing. It is still beta
930 * env_parallel is heavily modified for all shells and testing has been
933 * Selectively choosing what to export using --env now works for
934 env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
936 * --round-robin now gives more work to a job that processes faster
937 instead of same amount to all jobs.
939 * --pipepart works on block devices on GNU/Linux.
941 * GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
942 Introns for Phylogenetics from High-Throughput Sequencing Reads
943 Using Target Enrichment
944 http://www.bioone.org/doi/full/10.3732/apps.1600016
946 * GNU Parallel was cited in: StrAuto - Automation and Parallelization
947 of STRUCTURE Analysis
948 http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
950 * GNU Parallel was cited in: Tools and techniques for computational
952 http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
954 * GNU Parallel was cited in: FlashPCA: fast sparse canonical
955 correlation analysis of genomic data
956 http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
958 * GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
959 Fine-tuning Query Expansion and Unification Strategies
960 http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
962 * GNU Parallel was cited in: The Evolution and Fate of
963 Super-Chandrasekhar Mass White Dwarf Merger Remnants
964 http://arxiv.org/pdf/1606.02300.pdf
966 * GNU Parallel was cited in: Evaluation of Coastal Scatterometer
968 https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
970 * GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
972 * The iconv slurp misfeature
973 http://www.openfusion.net/linux/iconv_slurp_misfeature
975 * แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
977 * Bug fixes and man page updates.
982 * $PATH can now be exported using --env PATH. Useful if GNU Parallel
983 is not in your path on remote machines.
985 * If --block is left out, --pipepart will use a block size that will
986 result in 10 jobs per jobslot.
988 * The cookie from 2016-01-04 was won by Morgan Rodgers on the
989 2016-06-06 after 5 months.
991 * Vote for GNU Parallel's community ad on
992 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
994 * GNU Parallel was cited in: Genotypic Resistance Tests Sequences
995 Reveal the Role of Marginalized Populations in HIV-1 Transmission in
996 Switzerland http://www.nature.com/articles/srep27580
998 * GNU Parallel was cited in: A Deep-Learning Approach for Operation of
999 an Automated Realtime Flare Forecast
1000 https://arxiv.org/pdf/1606.01587.pdf
1002 * Unix parallel: Populating all the USB sticks
1003 http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
1005 * GNU Parallel is a fantastic utility https://www.dray.be/parallel/
1007 * Combining a large number of VCF files
1008 https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
1010 * Useful Scraping Techniques
1011 http://blog.apps.npr.org/2016/06/17/scraping-tips.html
1013 * Tools of the trade
1014 http://onox.com.br/2015/05/tools-of-the-trade/#more-198
1016 * Armslist scraper https://github.com/nprapps/armslist-scraper/
1018 * Bug fixes and man page updates.
1023 * niceload --net pauses the program if the internet connection is
1026 * Vote for GNU Parallel's community ad on
1027 https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
1029 * Updated speed comparison between versions
1030 https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
1032 * GNU Parallel was cited in: Improving computation efficiency by
1033 parallel programming
1034 http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
1036 * GNU Parallel was cited in: A supernova feedback implementation for
1037 the astrophysical simulation software Arepo
1038 https://arxiv.org/abs/1604.06071
1040 * GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
1041 resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
1043 * GNU Parallel was cited in: Host-pathogen co-evolution and the
1044 emergence of broadly neutralizing antibodies in chronic infections
1045 https://arxiv.org/abs/1512.06296
1047 * GNU Parallel was cited in: Pacific People, Metabolic Disease and
1048 Evolutionary Processes: a mitochondrial DNA study
1049 https://otago.ourarchive.ac.nz/handle/10523/6340
1051 * GNU Parallel was cited in: The effect of domain modeling on
1052 efficiency of planning: Lessons from the Nomystery domain
1053 http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
1055 * GNU Parallel was cited in: Oops, my tests broke the build: An
1056 analysis of Travis CI builds with GitHub
1057 https://peerj.com/preprints/1984/
1059 * GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
1060 Distinct Set of Genomic Properties Over 40 Million Years of
1061 Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
1063 * GNU Parallel was cited in: An Empirical Comparison of Neural
1064 Architectures for Reinforcement Learning in Partially Observable
1066 http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
1068 * GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
1069 Management in Requester-wins Hardware Transactional Memory
1070 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
1072 * GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
1073 Mutation-Induced Stability Changes with Feature-Based Multiple
1075 http://www.sciencedirect.com/science/article/pii/S0022283616000310
1077 * GNU Parallel was cited in: A new orthology assessment method for
1078 phylogenomic data: Unrooted Phylogenetic Orthology
1079 http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
1080 https://github.com/ballesterus/UPhO
1082 * GNU Parallel was cited in: Distinctive Interest Point Selection for
1083 Efficient Near-duplicate Image Retrieval
1084 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
1086 * GNU Parallel was cited in: The Evolution of C Programming Practices:
1087 A Study of the Unix Operating System 1973–2015
1088 https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
1089 thumbnail graphs I have ever seen scattered all over the text)
1091 * GNU Parallel was cited in: Data processing pipeline for serial
1092 femtosecond crystallography at SACLA
1093 http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
1095 * GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
1096 Dynamics http://arxiv.org/pdf/1512.01460.pdf
1098 * GNU Parallel was cited in: Genomic legacy of the African cheetah,
1100 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
1102 * GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
1103 Characterization of IPv6 Network Security Policy
1104 http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
1106 * GNU Parallel was cited in: Comprehensive Annotation of the
1107 Parastagonospora nodorum Reference Genome Using Next-Generation
1108 Genomics, Transcriptomics and Proteogenomics
1109 http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
1111 * GNU Parallel was cited in: How attention influences perceptual
1112 decision making: Single-trial EEG correlates of drift-diffusion
1113 model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
1115 * GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
1116 Using High-Throughput Sequencing Reads
1117 http://repository.upenn.edu/edissertations/1460/
1119 * GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
1120 Processing with Associative Transducers
1121 http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
1123 * GNU Parallel was cited in: PVAIR: Partial Variable Assignment
1124 InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
1126 * GNU Parallel was cited in: Comparative Cladistics: Fossils,
1127 Morphological Data Partitions and Lost Branches in the Fossil Tree
1128 of Life http://opus.bath.ac.uk/43955/
1130 * GNU Parallel was cited in: Shannon: An Information-Optimal de
1131 NovoRNA-Seq Assembler
1132 http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
1134 * GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
1135 Estimation for Coastal Ocean Modeling
1136 https://repositories.lib.utexas.edu/handle/2152/32435
1138 * GNU Parallel was cited in: Computational Design of DNA-Binding
1140 http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
1142 * GNU Parallel was cited in: Reference genotype and exome data from an
1143 Australian Aboriginal population for health-based research
1144 http://www.nature.com/articles/sdata201623
1146 * GNU Parallel was cited in: Do aye-ayes echolocate?
1147 http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
1149 * GNU Parallel was cited in: Functional enrichments of disease
1150 variants across thousands of independent loci in eight diseases
1151 http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
1153 * GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
1154 microbial trait analyzer
1155 http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
1157 * GNU Parallel was mentioned in: Fast Playback Framework for Analysis
1158 of Ground-Based Doppler Radar Observations Using MapReduce
1160 http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
1162 * NCBI blast tutorial
1163 https://github.com/enormandeau/ncbi_blast_tutorial
1165 * Distributed Preservation Made Simple
1166 https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
1168 * Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
1170 * Bug fixes and man page updates.
1175 * :::+ and ::::+ work like ::: and :::: but links this input source to
1176 the previous input source in a --xapply fashion. Contrary to
1177 --xapply values do not wrap: The shortest input source determines
1180 * --line-buffer --keep-order now outputs continously from the oldest
1181 job still running. This is more what you would expect than the
1182 earlier behaviour where --keep-order had no effect with
1185 * env_parallel supports tcsh, csh, pdksh. In fish it now supports
1186 arrays. In csh/tcsh it now supports variables, aliases, and arrays
1187 with no special chars. In pdksh it supports aliases, functions,
1188 variables, and arrays.
1190 * Function exporting on Mac OS X works around old Bash version.
1192 * Better CPU detection on OpenIndiana.
1194 * GNU Parallel was cited in: Automatic Methods for Assisted
1196 https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
1198 * GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
1199 for Natural SUSY with a R-Sneutrino LSP
1200 http://arxiv.org/pdf/1603.06130.pdf
1202 * GNU Parallel was cited in: An Operational Radiometric Landsat
1203 Preprocessing Framework for Large-Area Time Series Applications
1204 https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
1206 * A basic demo of how GNU Parallel can speed up execution of commands
1207 https://www.youtube.com/watch?v=kl8LO2jcvMc
1209 * qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
1211 * FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
1213 * Parallel Processing with Catmandu
1214 https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
1217 http://staypython.blogspot.dk/2016/04/gnu-parallel.html
1219 * Bug fixes and man page updates.
1224 * env_parallel is a function that exports the environment (functions,
1225 aliases, variables, and arrays) to GNU Parallel. Run 'man
1226 env_parallel' for details.
1228 * niceload --prg now searches for substrings if no process with the
1231 * GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
1232 Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
1234 * GNU Parallel was mentioned (with wrong citation) in: Dual Level
1235 Parallel Computations for LargeScale High-Fidelity Database to
1236 Design Aerospace Vehicles
1237 http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
1239 * Using ‘Parallel’ in Unix
1240 https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
1242 * JPEG Squish uses (and co-distributes) GNU Parallel:
1243 http://dantidswell.co.uk/jpeg-squish/
1245 * Bug fixes and man page updates.
1250 * Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
1251 http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
1252 http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
1253 http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
1255 * Daily Quick Tip: parallel
1256 https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
1258 * Downloading a list of URLs
1259 http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
1261 * Using GNU Parallel and ImageMagick for Conversions
1262 http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
1264 * Running bash commands in parallel
1265 http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
1267 * parallel processing in PDAL
1268 https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
1270 * A Million Text Files And A Single Laptop
1271 http://randyzwitch.com/gnu-parallel-medium-data/
1273 * 「今日から使い切る」ための GNU Parallelによる並列処理入門
1274 http://www.slideshare.net/koji_matsuda/gnu-parallel
1276 * Bug fixes and man page updates.
1281 * --sql DBURL uses DBURL as storage for jobs and output. It does not
1282 run any jobs so it requires at least one --sqlworker. DBURL must
1285 * --sqlworker DBURL gets jobs from DBURL and stores the result back to
1288 * --sqlandworker is a shorthand for --sql and --sqlworker.
1290 * --sqlworker requires the output of a single job to fit in memory.
1292 * --results now also saves a file called 'seq' containing the sequence
1295 * If $PARALLEL_ENV is a file, then that file will be read into
1298 * man parallel_tutorial has been given an overhaul.
1300 * --workdir now accepts replacementstrings.
1302 * GNU Parallel was cited in: Possum - A Framework for
1303 Three-Dimensional Reconstruction of Brain Images from Serial
1304 Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
1306 * GNU Parallel was cited in: A Genetic Algorithm for the selection of
1307 structural MRI features for classification of Mild Cognitive
1308 Impairment and Alzheimer's Disease
1309 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
1311 * GNU Parallel was cited in: The Effect of Domain Modeling on
1312 Performance of Planning Algorithms
1313 http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
1315 * Plotting time tables for jobs run by GNU Parallel
1316 https://github.com/ziotom78/plot_joblog
1318 * GNU Parallel was used in: Mission Impossible: you have 1 minute to
1319 analyze the Ebola Genome https://www.biostars.org/p/119397
1321 * GNU Parallel is used in LAST: http://last.cbrc.jp/
1323 * Distributed Log Search Using GNU Parallel
1324 http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
1326 * Bug fixes and man page updates.
1331 * --transfer is now an alias for --transferfile {}.
1333 * --transferfile works like --transfer, but takes an argument like
1334 --return. This makes it possible to combine transferring files
1335 with multiple input sources: parallel -S server --tf {1} wc {2}
1336 {1} ::: * ::: -l -w -c
1338 * total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
1339 $_=total_jobs() =}' ::: {1..50}
1341 * GNU Parallel was cited in: Evolution and Learning in Heterogeneous
1343 http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
1345 * GNU Parallel was cited in: Achieving Consistent Doppler Measurements
1346 from SDO/HMI Vector Field Inversions
1347 http://arxiv.org/pdf/1511.06500.pdf
1349 * Flo uses GNU Parallel: https://github.com/wurmlab/flo
1351 * 使用 GNU parallel 來平行運算
1352 http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
1354 * Bug fixes and man page updates.
1359 * GNU Parallel packaged for CERN CentOS:
1360 http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
1362 * GNU Parallel was cited in: The Outer Solar System Origins Survey:
1363 I. Design and First-Quarter Discoveries
1364 http://arxiv.org/pdf/1511.02895.pdf
1366 * GNU Parallel was cited in: Contrasting genetic architectures of
1367 schizophrenia and other complex diseases using fast
1368 variance-components analysis
1369 http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
1371 * GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
1372 using Support Vector Machines
1373 http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
1375 * GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
1376 Using Brownian Dynamics, Molecular Dynamics and Milestoning
1377 http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
1379 * GNU Parallel was cited in: A Detailed Characterization of Errors in
1380 Logic Circuits due to Single-Event Transients
1381 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
1383 * GNU Parallel was cited in: Arabic Speaker Emotion Classification
1384 Using Rhythm Metrics and Neural Networks
1385 http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
1387 * GNU Parallel was cited in: Stride Search: a general algorithm for
1388 storm detection in high resolution climate data
1389 http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
1391 * GNU Parallel was cited in: Decomposing Digital Paintings into Layers
1392 via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
1394 * GNU Parallel was cited in: Structure and evolutionary history of a
1395 large family of NLR proteins in the zebrafish
1396 http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
1398 * GNU Parallel was cited in: Evolution of movement strategies under
1399 competitive interactions
1400 http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
1402 * Automating large numbers of tasks
1403 https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
1405 * Max out your IOPs with GNU Parallel
1406 http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
1408 * Bug fixes and man page updates.
1413 * --plus makes it possible to use {##} as a shorthand for
1414 {= $_=$Global::JobQueue->total_jobs() =} which gives the the number
1415 of jobs to run in total.
1417 * {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
1420 * GNU Parallel is now mostly compatible with lsh
1421 (http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
1422 autossh (http://www.harding.motd.ca/autossh/).
1424 * --workdir ... now also works when run locally.
1426 * GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
1427 regular graph http://arxiv.org/pdf/1509.05933.pdf
1429 * GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
1431 http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html
1433 * GNU Parallel is used in TraitAR:
1434 https://testpypi.python.org/pypi/traitar/0.1.4
1436 * A parallel and fast way to download multiple files
1437 http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html
1439 * Usar GNU Parallel para aumentar el rendimiento de tus scripts
1440 http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/
1442 * Bug fixes and man page updates.
1447 * GNU Parallel was cited in: Flexible Modeling of Epidemics with an
1448 Empirical Bayes Framework
1449 http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382
1451 * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
1452 https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf
1454 * GNU Parallel was cited in: A Scalable Parallel Implementation of
1455 Evolutionary Algorithms for Multi-Objective Optimization on GPUs
1456 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074
1458 * GNU Parallel was cited in: How Can We Measure the Similarity Between
1459 Résumés of Selected Candidates for a Job?
1460 https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job
1462 * GNU Parallel was cited in: Interplay of cell dynamics and epithelial
1463 tension during morphogenesis of the Drosophila pupal wing
1464 http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf
1466 * Third-party selling GNU Parallel T-shirts
1467 http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html
1469 * Joys of gnu parallel
1470 http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/
1472 * Crop and resize images with bash and ImageMagick
1473 https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/
1475 * Three Ways to Script Processes in Parallel
1476 http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/
1478 * What It Looks Like to Process 3.5 Million Books
1479 http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/
1481 * Bug fixes and man page updates.
1486 * If $job->skip() is called in {= =} the job will not be run.
1488 * @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
1489 $_="j" =}' ::: 1 2 3 ::: 4 5 6
1491 * Version of GNU Parallel that uses PostgreSQL as backend
1492 https://github.com/stephen-fralich/parallel-sql/
1494 * SpeedSeq: ultra-fast personal genome analysis and interpretation
1495 http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html
1497 * GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep
1499 * Who actually reads the code?
1500 http://www.fsf.org/blogs/community/who-actually-reads-the-code
1502 * Introduction to GNU Parallel
1503 http://erictleung.com/2015/08/06/intro-to-gnu-parallel/
1505 * ¿Alguien se lee el código?
1506 http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html
1508 * ¿Quién se lee el código fuente?
1509 https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/
1511 * Distribution des traitements avec GNU Parallel
1512 http://blog.inovia-conseil.fr/?p=226#4
1514 * Эксперимент по проверке, читают ли код открытых проектов
1515 http://www.opennet.ru/opennews/art.shtml?num=42718
1517 * 多核心主機搭配 GNU parallel
1518 http://blog.zeroplex.tw/2015/08/gnu-parallel.html
1520 * Bug fixes and man page updates.
1525 * If a record fits in a block, --block only reads upto the size of
1526 --block. If not: --block reads a full --block more.
1528 * Due to widely spread distributions still using --tollef even after a
1529 year of being retired following a year of being obsolete, --tollef
1530 now gives an error unless used with --gnu.
1532 * --nice now uses a perl wrapper instead of the nice command.
1534 * Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
1537 * A parser for GNU Parallel --joblog files:
1538 https://github.com/harryjubb/joblog
1540 * GNU Parallel was cited in: Dynamical formation & scattering of
1541 hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
1542 collisions http://arxiv.org/pdf/1507.03593.pdf
1544 * GNU Parallel was cited in: A Fast Compiler for NetKAT
1545 http://arxiv.org/pdf/1506.06378.pdf
1547 * GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
1549 http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
1551 * GNU Parallel was used in: Somatic mutation calling from the matched
1552 tumor-normal exome-sequencing
1553 http://fafner.meb.ki.se/biostatwiki/somac/
1555 * Parallel Processing from the Command Line
1556 https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
1558 * Using GNU Parallel to speed up network operations
1559 http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
1561 * Crawl faster with "parallel" - but how fast?
1562 http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
1564 * Simultaneously benchmark many URLs with ApacheBench and GNU parallel
1565 https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
1567 * Bug fixes and man page updates.
1572 * --halt has been rewritten completely. You can now combine
1573 percentages with success or fail. See the man page.
1575 * Exit values 102..254 have been removed. 101 means more than 100 jobs
1578 * Killing through --timeout, --memfree, or --halt is now done as a
1581 * --termseq determines which signals are sent when a job is killed.
1583 * An empty argument would previously cause no string to be
1584 inserted. This is now changed to '' being inserted, thus prepending
1585 a space to the output of: parallel echo {} b ::: ''
1587 * $PARALLEL_ENV can now be set to an environment prepending the
1588 command. Used in env_parallel as mentioned in the manpage.
1590 * --retry-failed will retry all failed jobs in a joblog. It will
1591 ignore any command given.
1593 * --ssh and $PARALLEL_SSH can be used to set the command used for
1594 ssh. The command is assumed to behave the same way as ssh.
1596 * --fifo now works in csh, too.
1598 * Q(...) can be used in {= =} to shell quote a string.
1600 * GNU Parallel was cited in: DockBench: An Integrated Informatic
1601 Platform Bridging the Gap between the Robust Validation of Docking
1602 Protocols and Virtual Screening Simulations
1603 http://www.mdpi.com/1420-3049/20/6/9977
1605 * GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
1607 http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
1609 * GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
1610 scattering and resonance calculations
1611 http://arxiv.org/pdf/1505.07691.pdf
1613 * GNU Parallel was cited in: A quantitative assessment of the Hadoop
1614 framework for analyzing massively parallel DNA sequencing data
1615 http://link.springer.com/article/10.1186/s13742-015-0058-5
1617 * GNU Parallel was cited in: A composite genome approach to identify
1618 phylogenetically informative data from next-generation sequencing
1619 http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
1621 * GNU Parallel is used in: taxator-tk
1622 http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
1624 * GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
1626 * GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
1628 * GNU Parallel is used in: A Fingerprint Identification System
1629 https://curve.carleton.ca/system/files/theses/28733.pdf
1631 * Job ad asking for GNU Parallel experience:
1632 http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
1634 * Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
1636 * Bug fixes and man page updates.
1641 * Security: The security issue for --sshlogin + --fifo/--cat has been
1642 fixed. Thereby all issues with
1643 http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
1646 * Security: After further security analysis the issue fixed in
1647 20150422 also fixed the problem for --tmux.
1649 * GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
1650 coordinated transcriptional regulation in gene expression
1652 http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
1654 * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
1655 Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
1656 Metagenomics and RNA-seq
1657 http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
1659 * GNU Parallel was cited in: Sequencing the cap-snatching repertoire
1660 of H1N1 influenza provides insight into the mechanism of viral
1661 transcription initiation
1662 http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
1664 * GNU Parallel was cited in: Genome assembly using Nanopore-guided
1665 long and error-free DNA reads
1666 http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
1668 * GNU Parallel was used (unfortunately with wrong citation) in:
1669 Comparing the CarbonTracker and TM5-4DVar data assimilation systems
1670 for CO2 surface flux inversions
1671 http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
1673 * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
1674 https://bitbucket.org/srp33/gsoa
1676 * A Quick and Neat :) Orchestrator using GNU Parallel
1677 http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
1679 * Execute commands on multiple computers using GNU Parallel (setting
1680 up a cluster on the cheap)
1681 https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
1683 * Functions and GNU parallel for effective cluster load management
1684 http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
1686 * Use parallel processing to save time importing databases
1687 http://drupalsun.com/node/41854
1689 * Run multiple ssh commands in parallel with GNU Parallel
1690 http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
1692 * Importing huge databases faster
1693 https://www.lullabot.com/blog/article/importing-huge-databases-faster
1695 * Parallel? Gnu parallel! https://debian.pro/1834
1697 * Bug fixes and man page updates.
1702 New in this release:
1704 * Security fix. An attacker on the local system could make you
1705 overwrite one of your own files with a single byte. The problem
1706 exist when you use --compress or --tmux or --pipe or --cat or
1707 --fifo. The attacker must figure out the randomly chosen file name
1708 and create a symlink within a time window of 15 ms.
1710 * --shuf will generate all jobs, and shuffle them before running
1711 them. This is useful to get a quick preview of the results before
1712 running the full batch.
1714 * GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
1716 * GNU Parallel was cited in: Scaling Machine Learning for Target
1717 Prediction in Drug Discovery using Apache Spark
1718 https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
1720 * GNU Parallel was cited in: Bayesian inference of protein structure
1721 from chemical shift data https://peerj.com/articles/861/
1723 * GNU Parallel was cited in: Toward Enhanced Metadata Quality of
1724 Large-Scale Digital Libraries: Estimating Volume Time Range
1725 https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
1727 * GNU Parallel was cited in: Experimental study on the Wind Farm
1728 Substation Cable Installation Problem
1729 http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
1731 * GNU Parallel was used in: https://github.com/KAPPS-/landsat-gifworks
1733 * GNU Parallel was used in: https://github.com/exascience/elprep
1735 * GNU Parallel was used in:
1736 http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
1738 * GNU Parallel was used in:
1739 http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
1741 * GNU Parallel was used in: Rapid haploid SNP calling
1742 https://github.com/tseemann/snippy
1744 * Pictures and Metadata
1745 http://www.ozzy.no/2015/02/05/pictures-and-metadata/
1747 * Task automation with bash and parallel
1748 https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
1750 * How To: Speed Up File Transfers in Linux using RSync with GNU
1752 http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
1754 * Mirroring a Git Repository
1755 https://avacariu.me/articles/mirroring-a-git-repository.html
1757 * Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
1758 https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
1761 http://www.zhihu.com/question/29257300
1763 * Bug fixes and man page updates.
1768 New in this release:
1770 * --number-of-cores respects 'taskset' on GNU/Linux.
1772 * --joblog --pipe gives the data send and received in the log.
1774 * GNU Parallel was tested to support 100 GB sized records in --pipe. A
1775 few bugs was fixed to support >2 GB records. It works, but is rather
1778 * GNU Parallel was cited in: RIG: Recalibration and Interrelation of
1779 genomic sequence data with the GATK
1780 http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
1782 * GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
1783 Improving metagenomic analysis with high performance classification
1784 and wide taxonomic attachment
1785 http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
1787 * GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
1788 shaped by declining effective population size
1789 http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
1791 * GNU Parallel was cited in: Evidence for DCO+ as a probe of
1792 ionization in the warm disk surface
1793 http://arxiv.org/pdf/1503.02659.pdf
1795 * GNU Parallel was cited in: De novo assembly and annotation of the
1796 Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
1797 from raw genomic reads and comparative analysis with the yellow
1798 fever mosquito (Aedes aegypti)
1799 http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
1801 * GNU Parallel was cited in: A General Approach to Network
1802 Configuration Analysis
1803 http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
1805 * GNU Parallel was cited in: Scrimer: designing primers from
1807 http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
1809 * GNU Parallel was cited in: Efficient Retrieval of Key Material for
1810 Inspecting Potentially Malicious Traffic in the Cloud
1811 http://sacko.uk/pdf/2015.1.pdf
1813 * GNU Parallel will be presented at Strataconf: Poor Man's Parallel
1815 http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
1817 * GNU Parallel was used in:
1818 https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
1820 * GNU Parallel was used in: https://github.com/martymac/fpart
1822 * GNU Parallel was used in:
1823 https://github.com/hoytak/diabetic-retinopathy-code
1825 * GNU Parallel was used in:
1826 https://github.com/mehmattski/HybSeqPipeline
1828 * GNU Parallel was used in:
1829 http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
1831 * Using GNU Parallel on a Raspberry Pi cluster:
1832 http://www.dcglug.org.uk/cluster-progress/
1834 * An introduction to vector tiling and map reduce in postgis:
1835 http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
1837 * Running scripts in parallel with GNU Parallel:
1838 http://code.jasonbhill.com/2015/03/
1840 * Mahout: Parallelising the creation of DecisionTrees:
1841 http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
1843 * High-Performance Scientific Computing: Running serial jobs in
1845 https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
1847 * Parallel cardinality on your laptop
1848 https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
1850 * Experiments about a better locate using grep
1851 http://a3nm.net/blog/better_locate.html
1853 * Homework with GNU Parallel:
1854 https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
1856 * Parallel - Jobs in Skripten parallelisieren:
1857 https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
1859 * GNU Parallel, czyli 100% użycia procesora
1860 http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
1862 * Bug fixes and man page updates.
1867 * --tmux has gotten a major overhaul.
1869 * GNU Parallel was cited in: RaftLib: A C++ Template Library for High
1870 Performance Stream Parallel Processing
1871 http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
1873 * GNU Parallel was cited in: Quantifying properties of hot and dense
1874 QCD matter through systematic model-to-data comparison
1875 http://arxiv.org/pdf/1502.00339.pdf
1877 * GNU Parallel was cited in: Towards Collaborative Exploration and
1878 Analysis of Big Data from Mars: A Noachis Terra Case Study
1879 http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
1881 * GNU Parallel was used (unfortunately with wrong citation) in:
1882 Performance and Scaling Comparison Study of RDBMS and NoSQL
1884 http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
1886 * GNU Parallel was used (unfortunately without citation) in: Parallel
1887 Implementation of Big Data Pre-Processing Algorithms for Sentiment
1888 Analysis of Social Networking Data
1889 http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
1891 * GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
1892 Ultra-fast personal genome analysis and interpretation
1893 http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
1895 * Zip Folders with GNU Parallel
1896 http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
1898 * Using GNU Parallel with Freesurfer
1899 http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
1901 * GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
1903 * Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
1905 * Bug fixes and man page updates.
1910 * Remote jobs now send stderr (standard error) to stderr (standard
1911 error) instead of stdout (standard output).
1913 * Remote execution command is now packed using base64 encoded
1914 bzip2. This means that big environments (app. 100 KB) can be
1915 transferred. This change makes remote execution alpha quality.
1917 * --semaphoretimeout now takes a negative value. This means give up if
1918 the semaphore is not gotten within the timeout.
1920 * --halt -1 and -2 now means halt if a job succeeds (so the opposite
1923 * --no-keep-order will reverse --keep-order.
1925 * Bash's second fix of shellshock caused --env to break again when
1926 exporting functions. This has been fixed again.
1928 * A semibig refactoring of big functions. All non-trivial functions
1929 are now less than 100 lines. The refactoring makes this release beta
1932 * A description of the design decisions for GNU Parallel can be found
1933 in 'man parallel_design'.
1935 * A bug fix in replacement strings caused rewrite of the replacement
1936 function. This makes use of replacement strings alpha quality.
1938 * GNU Parallel was cited in: Improving Energy and Performance with
1939 Spintronics Caches in Multicore Systems
1940 http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
1942 * GNU Parallel was cited in: Parallel post-processing with MPI-Bash
1943 http://dl.acm.org/citation.cfm?id=2691137
1945 * GNU Parallel was cited in: Distinguishing cause from effect using
1946 observational data: methods and benchmarks
1947 http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
1949 * GNU Parallel was cited in: Data Science at the Command Line
1950 http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
1952 * GNU Parallel was cited in: Resolution of Genetic Map Expansion
1953 Caused by Excess Heterozygosity in Plant Recombinant Inbred
1954 Populations http://www.g3journal.org/content/4/10/1963.full.pdf
1956 * GNU Parallel was cited in: Bayesian Inference of Protein Structure
1957 from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
1959 * GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
1960 in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
1962 * GNU Parallel was cited in: Computação Verde na Camada de Aplicação
1963 https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
1965 * GNU Parallel was cited in: Frameshift alignment: statistics and
1966 post-genomic applications
1967 http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
1969 * GNU Parallel was cited in: Towards Recommender Engineering Tools and
1970 Experiments for Identifying Recommender Differences
1971 http://elehack.net/research/thesis/mde-thesis.pdf
1973 * GNU Parallel was cited in: Speaker Environment Classification Using
1974 Rhythm Metrics in Levantine Arabic Dialect
1975 http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
1977 * GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
1978 http://arxiv.org/pdf/1501.02155.pdf
1980 * GNU Parallel was cited in: Allocation Policy Analysis for Cache
1981 Coherence Protocols for STT-MRAM-based caches
1982 http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
1984 * GNU Parallel was cited in: Using Trusted Platform Module for
1985 securing virtual environment access in Cloud
1986 http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
1988 * GNU Parallel was cited in: Weakly Supervised Learning for
1989 Compositional Sentiment Recognition
1990 http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
1992 * GNU Parallel was cited in: Agility and Performance in Elastic
1993 Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
1995 * GNU Parallel was used (unfortunately without citation) in: Large
1996 Scale Author Name Disambiguation in Digital Libraries
1997 http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
1999 * GNU Parallel is used in BEDOPS:
2000 https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
2002 * Job ad asking for GNU Parallel skills:
2003 http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
2005 * GNU Parallel: Open Source For You (OSFY) magazine, October 2013
2007 http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
2009 * Multithreaded Encryption and Compression
2010 http://www.krazyworks.com/multithreaded-encryption-and-compression/
2012 * GNU Parallel on OSX and Linux
2013 https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
2015 * How to build gnu parallel from source on Ubuntu PC?
2016 http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
2018 * GNU parallel for openaddr-process-one
2019 https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
2021 * From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
2023 * Software Development Tooling
2024 http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
2026 * コマンドを並列に実行するGNU parallelがとても便利
2027 http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
2029 * Bug fixes and man page updates.
2034 * Remote systems can be divided into hostgroups (e.g. web and db) by
2035 prepending '@groupname/' to the sshlogin. Multiple groups can be
2036 given by separating groups with '+'. E.g. @web/www1 @web+db/www2
2039 * Remote execution can be restricted to servers that are part of one
2040 or more groups by '@groupname' as an sshlogin. Multiple groups can
2041 be given by separating groups with '+'. E.g. -S @web or -S @db+web
2043 * With --hostgroup you can restrict arguments to certain hostgroups by
2044 appending '@groupname' to the argument. Multiple groups can be
2045 given by separating groups with '+'. E.g. my_web_arg@web
2046 db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
2047 developing a prototype for this.
2049 * GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
2050 Massively Parallel Sequencing Data Analysis using Hadoop
2051 http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
2053 * GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
2054 the Histological Quantification of Whole Slide Images
2055 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
2057 * GNU Parallel was cited in: Exploring a multiprocessor design space
2058 to analyze the impact of using STT-RAM in the memory hierarchy
2059 http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
2061 * Command-Line OCR with Tesseract on Mac OS X
2062 https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
2064 * Bug fixes and man page updates.
2069 * --env was changed to deal with Bash's new way of exporting a function.
2071 * GNU Parallel was cited in: Exclusion of cosmic rays in
2072 protoplanetary disks. II. Chemical gradients and observational
2073 signatures http://iopscience.iop.org/0004-637X/794/2/123/article
2075 * GNU Parallel was cited in: Application of Machine Learning to
2076 Algorithm Selection for TSP
2077 http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
2079 * GNU Parallel was cited in: Performance Models for LTE-Advanced
2081 http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
2083 * GNU Parallel was used (unfortunately without citation) in: De Novo
2084 Insertions and Deletions of Predominantly Paternal Origin Are
2085 Associated with Autism Spectrum Disorder
2086 http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
2088 * GNU Parallel was determined 'popular' by Statistical Analysis of
2089 Popular Open Source Software Projects and Their Communities
2090 http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
2092 * GNU Parallel is demonstrated in: Data Science at the Command Line:
2093 Facing the Future with Time-Tested Tools
2095 * GNU Parallel was covered in a talk at Sydney Perl Mongers group
2096 http://www.openfusion.net/talks/pwp/#24
2098 * GNU Parallel and how to get started with it
2099 http://www.jduck.net/blog/2014/09/30/gnu-paralell/
2101 * Behat/Selenium/Parallel
2102 http://jaffamonkey.com/behat-selenium-parallel/
2104 * Comparing Golang, Scala, Elixir and Ruby for ETL
2105 http://www.dimroc.com/2014/09/29/etl-language-showdown/
2107 * Assemble a list of which of these hosts are up or down
2108 http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
2110 * Running commands on many nodes simultaneously
2111 http://opsfun.wordpress.com/2014/03/31/19/
2113 * Ubuntu 13.04でGNU ParallelをGNUモードで動かす
2114 http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
2116 * Bug fixes and man page updates.
2121 * If the file give as --sshloginfile is changed it will be re-read
2122 when a job finishes though at most once per second. This makes it
2123 possible to add and remove hosts while running.
2125 * Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
2127 * OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
2129 * GNU Parallel was presented at Balti and Bioinformatics "On-Air"
2130 http://youtu.be/UtXlr19xTh8?t=2h5m0s
2132 * Pleiades Plus uses GNU Parallel
2133 https://github.com/ryanfb/pleiades-plus
2135 * Imagemagick and GNU Parallel
2136 http://deepdish.io/2014/09/15/gnu-parallel/
2138 * GNU Parallel (Sebuah Uji Coba)
2139 http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
2141 * GNU Parallel: 并行执行Linux命令
2142 http://blog.csdn.net/xzz_hust/article/details/39183837
2147 * GNU Parallel now uses the same shell it was started from as the
2148 command shell for local jobs. So if GNU Parallel is started from
2149 tcsh it will use tcsh as its shell even if the login $SHELL is
2150 different. For remote jobs the login $SHELL will be used.
2152 * The whole current environment in bash can be copied by using a shell
2153 wrapper function (Search manual for env_parallel).
2155 * --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
2156 {...} {/..} {/...}. The idea being that '+foo' matches the opposite
2157 of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
2158 = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
2160 * GNU Parallel now deals correctly with the combination
2161 rsync-3.1.X-client and rsync-2.5.7-server
2163 * GNU Parallel was cited in: A Web Service for Scholarly Big Data
2164 Information Extraction
2165 http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
2167 * Comparison of the speed of different GNU Parallel versions:
2168 http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
2170 * GNU Parallel was covered in the webcast 2014-08-20: Data Science at
2171 the Command Line http://www.oreilly.com/pub/e/3115
2173 * Distributed processing with GNU parallel
2174 http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
2176 * A Peek into GNU Parallel
2177 http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
2179 * Сборка GNU parallel для CentOS/RHEL
2180 http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
2182 * Bug fixes and man page updates.
2187 * {= perl expression =} can be used as replacement string. The
2188 expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
2189 the string. This makes replacement strings extremely flexible.
2191 * Positional perl expressions (similar to {2}) are given as {=2 perl
2192 expression=} where 2 is the position.
2194 * One small backwards incompatibility: {1}_{2} will replace {2} with
2195 the empty string if there is only one argument. Previously {2} would
2196 have been left untouched.
2198 * Replacement strings can be defined using --rpl. E.g. parallel --rpl
2199 '{.gz} s/\.gz$//' echo {.gz} ::: *.gz
2201 * The parenthesis around {= perl expression =} can be changed with
2204 * --tmux will direct the output to a tmux session instead of
2205 files. Each running jobs will be in its own window.
2207 * --halt 10% will stop spawning new jobs if 10% failed so far.
2209 * GNU Parallel was cited in: bammds: A tool for assessing the ancestry
2210 of low depth whole genome data using multidimensional scaling (MDS)
2211 http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
2213 * GNU Parallel was cited in: Molecular ferroelectric contributions to
2214 anomalous hysteresis in hybrid perovskite solar cells
2215 http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
2217 * GNU Parallel was cited in: Energy Sorghum-a genetic model for the
2218 design of C4 grass bioenergy crops
2219 http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
2221 * GNU Parallel was cited in: Web-scale Content Reuse Detection
2222 www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
2224 * Tell your friends to sign up for the Webcast at 2014-08-20 covering
2225 GNU Parallel: Data Science at the Command Line
2226 http://www.oreilly.com/pub/e/3115
2228 * GNU Parallel all the things!
2229 http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
2231 * Shell command composition and dispatch
2232 http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
2234 * Parallelising plink (or anything else) the easy way
2235 http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
2237 * Easy and cheap cluster building on AWS
2238 https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
2240 * Paralelizace běžných činností v konzoli pomocí GNU Parallel
2241 http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
2243 * [原] Ubuntu 下使用 parallel 命令的注意事项
2244 http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
2246 * 简单的并行, 可使用GNU parallel
2247 http://jerkwin.github.io/2014/06/10/GNU-parallel/
2249 * Bug fixes and man page updates.
2254 * --shebang and --shebang-wrap now works on FreeBSD.
2256 * --pipepart works with --header, --regexp, --cat and --fifo.
2258 * ./configure --disable-documentation will not build documentation.
2260 * {%} works as job slot.
2262 * GNU Parallel was cited in: Energy Efficient, High-speed
2263 Communication in WSNs
2264 https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
2266 * GNU Parallel was cited in: Ferroelectric contributions to anomalous
2267 hysteresis in hybrid perovskite solar cells
2268 http://arxiv.org/pdf/1405.5810.pdf
2270 * Processes Paralleling to Speed up Computing and Tasks Execution in
2272 http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
2274 * Moving / Copying lots of s3 files quickly using gnu parallel
2275 http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
2277 * Speeding up grep log queries with GNU Parallel
2278 http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
2280 * Ubuntu - Gnu parallel - It's awesome
2281 http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
2283 * Export quicklooks with vector overlay using TuiView
2284 http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
2286 * GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
2288 * GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
2290 * Bug fixes and man page updates.
2295 * Use --semaphoretimeout to ignore the semaphore lock after a while.
2297 * {%} introduced as job slot replacement string. It has known bugs.
2299 * --slotreplace changes slot replacement string.
2301 * GNU Parallel officially in Solaris 11.2beta
2302 https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
2304 * GNU Parallel was cited in: A Comparison of Antenna Placement
2305 Algorithms http://abhinavjauhri.com/publications/eap.pdf
2307 * Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
2308 https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
2310 * BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
2312 * Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
2314 * Convert FLAC to MP3 with GNU parallel
2315 http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
2317 * JD Edwards Business Function Documentation
2318 http://www.azertech.net/content/jd-edwards-business-function-documentation
2320 * Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
2322 * How I start a bioinformatics project
2323 http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
2325 * No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
2327 * Bug fixes and man page updates.
2332 * --pipepart is a highly efficient alternative to --pipe if the input
2333 is a real file and not a pipe.
2335 * If using --cat or --fifo with --pipe the {} in the command will be
2336 replaced with the name of a physical file and a fifo respectively
2337 containing the block from --pipe. Useful for commands that cannot
2338 read from standard input (stdin).
2340 * --controlmaster has gotten an overhaul and is no longer
2343 * --env is now copied when determining CPUs on remote system. Useful
2344 for copying $PATH if parallel is not in the normal path.
2346 * --results now chops the argument if the argument is longer than the
2347 allowed path length.
2349 * Build now survives if pod2* are not installed.
2351 * The git repository now contains tags of releases.
2353 * GNU Parallel was cited in: Proactive System for Digital Forensic
2355 http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
2357 * GNU Parallel was cited in: Beyond MAP estimation with the
2358 track-oriented multiple hypothesis tracker
2359 http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
2361 * GNU Parallel was cited in: Prokka: rapid prokaryotic genome
2363 http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
2365 * GNU Parallel was used (unfortunately with improper citation) in:
2366 Perspectives in magnetic resonance: NMR in the post-FFT era
2367 http://www.sciencedirect.com/science/article/pii/S1090780713003054
2369 * GNU Parallel is used in https://github.com/cc2qe/speedseq
2371 * Batch XML validation at the command line.
2372 http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
2374 * freebayes-parallel uses GNU Parallel
2375 https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
2377 * Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
2379 * Speeding Up Grep Log Queries with GNU Parallel
2380 http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
2382 * How to run tbss_2_reg in parallel
2383 http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
2385 * GNU parallel example: blastn https://asciinema.org/a/8775
2387 * Iterative DNS Brute Forcing
2388 http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
2390 * Ejecutando comandos en paralelo
2391 http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
2393 * Ejecutando en paralelo en bash (ejemplo con rsync)
2394 http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
2396 * Bug fixes and man page updates.
2401 * Offical package for Alpine Linux now exists:
2402 http://alpinelinux.org/apk/main/x86/parallel
2404 * GNU Parallel was cited in: Estimating uncertainties in statistics
2405 computed from direct numerical simulation
2406 http://dx.doi.org/10.1063/1.4866813
2408 * GNU Parallel was cited in: Vehicle routing problems with time
2409 windows and multiple service workers: a systematic comparison
2410 between ACO and GRASP
2411 http://link.springer.com/article/10.1007/s10100-014-0341-z
2413 * GNU Parallel, quick and easy
2414 http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
2416 * Using Multiple CPU Cores With Command Line Tools
2417 http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
2419 * Batch convert mp3 CBR to VBR
2420 http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
2422 * Running Behat in parallel with Selenium grid
2423 http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
2425 * Git-Mirror per cronjob aktuell halten
2426 https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
2428 * Пишем многопоточный скрипт на bash
2429 http://dafter.ru/duf/howto/130.html
2431 * 如何利用多核CPU来加速你的Linux命令
2432 http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
2434 * Bug fixes and man page updates.
2439 * --tollef has been retired.
2441 * --compress has be redesigned due to bugs.
2443 * Format of --eta and --joblog has changed slightly.
2445 * GNU Parallel was cited in: Speaker Verification and Keyword Spotting
2446 Systems for Forensic Applications
2447 http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
2449 * GNU Parallel was cited in: Scaleable Code Clone Detection
2450 http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
2452 * GNU Parallel was cited in: Clone Detection that scales
2453 http://scg.unibe.ch/archive/masters/Vogt14a.pdf
2455 * GNU Parallel was cited in: Scalable Positional Analysis for Studying
2456 Evolution of Nodes in Networks
2457 http://arxiv-web3.library.cornell.edu/pdf/1402.3797
2459 * GNU Parallel was cited in: Aggregate Characterization of User
2460 Behavior in Twitter and Analysis of the Retweet Graph
2461 http://arxiv.org/pdf/1402.2671v1
2463 * GNU Parallel was used (unfortunately without citation) in: Causal
2464 Network Models for Predicting Compound Targets and Driving Pathways
2466 http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
2468 * GNU Parallel was used (unfortunately without citation) in:
2469 Performance and Energy Efficiency of Common Compression /
2470 Decompression Utilities
2471 http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
2473 * GNU Parallel was used (unfortunately without citation) in: SpringFS:
2474 Bridging Agility and Performance in Elastic Distributed Storage
2475 http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
2477 * GNU Parallel was recommended (without citation) in: Redesigning the
2478 Specificity of Protein-DNA Interactions with Rosetta
2479 http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
2481 * GNU Parallel is co-distributed with RepeatExplorer
2482 http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
2484 * Convert MP3 to a scrolling spectrum waterfall plot video
2485 http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
2487 * PHP wrapper class for the GNU Parallel tool
2488 https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
2490 * Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
2492 * Copias de archivos con rsync y parallel
2493 http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
2495 * Single-Thread-Programme auf Multicore-Rechnern parallelisieren
2496 http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
2498 * Распараллеливаем процессы для ускорения вычислений и выполнения
2499 заданий в Linux http://savepearlharbor.com/?p=210480
2501 * Bug fixes and man page updates.
2506 * GNU Parallel was cited in: On the likelihood of multiple bit upsets
2508 http://arxiv-web3.library.cornell.edu/pdf/1401.1003
2510 * HaploClique uses GNU Parallel
2511 https://github.com/armintoepfer/haploclique
2513 * Scraping NSScreencast
2514 https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
2516 * 30 Cool Open Source Software I Discovered in 2013
2517 http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
2519 * [Unix] 13. The power of doing things in Parallel
2520 http://leetaey.tistory.com/384
2522 * Parallel the execution of a job that read from stdin
2523 http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
2525 * Mon Make à moi (6:38-11:50)
2526 http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
2528 * Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
2529 effizienter in der Shell arbeiten
2530 https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
2532 * Summary of GNU Parallel tutorial
2533 http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
2535 * Bug fixes and man page updates.
2540 * GNU Parallel now has a motto: For people who live life in the
2543 * Detect if the buffer dir $TMPDIR runs out of space. This changes a
2544 central piece of code, making this release alpha quality.
2546 * --keep-order --(n)onall will sort according to the sshlogin.
2548 * Detect the number of CPUs on DEC Tru64.
2550 * GNU sql: --list-tables for sqlite3.
2552 * GNU Parallel was cited in: Variational Message-Passing: Extension to
2553 Continuous Variables and Applications in Multi-Target Tracking
2554 http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
2556 * GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
2558 https://www.duo.uio.no/handle/10852/37431
2560 * GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
2562 http://repositorio.ul.pt/handle/10451/9436
2564 * GNU Parallel was cited in: Diacritization, automatic segmentation
2565 and labeling for Levantine Arabic speech
2566 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
2568 * GNU Parallel was cited in: Investigation of emotion classification
2569 using speech rhythm metrics
2570 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
2572 * GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
2573 and Non-Native Speaking Styles
2574 http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
2576 * GNU Parallel was cited in: Evolutionary optimization of wetlands
2578 http://dl.acm.org/citation.cfm?id=2480400
2580 * GNU Parallel was cited (unfortunately with wrong citation) in:
2581 RDBMS vs NoSQL: Performance and Scaling Comparison
2582 http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
2584 * GNU Parallel was used (without proper citation) in: Comprehensive
2585 Analysis Pipeline for Discovery of Human Genetic Variation
2586 http://www.google.com/patents/US20130311106
2588 * Encrypt and decrypt in parallel with GPG
2589 http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
2591 * Using GNU Parallel to create a SVM classifier
2592 http://ivanyu.me/blog/2013/12/01/parallel/
2594 * Parallel xz compression
2595 http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
2597 * Got CPUs to burn? Put 'em to work with GNU parallel
2598 http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
2601 http://pastebin.com/JmnB9ffq
2603 * Gnu Parallel for fun and profit
2604 https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
2606 * Parallelization of Exploitation
2607 http://rantsideasstuff.com/parallelization-of-exploitation/
2609 * Running assemblies in parallel
2610 https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
2612 * Procesando la contabilidad del PP
2613 http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
2615 * Mon make à moi (French)
2616 http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
2618 * Bug fixes and man page updates.
2623 * A citation notice is printed on stderr only if stderr is a terminal,
2624 the user has not specified --no-notice and the user has not run
2625 --bibtex once. This makes the release alpha quality.
2627 * --compress will compress temporary files. If the output is big and
2628 very compressible this will take up less disk space in $TMPDIR and
2629 possibly be faster due to less disk I/O.
2631 * --compress-program comtrols which program to use for compressing
2634 * --bar show progress as a progress bar compatible with zenity.
2636 * --resume can now be used with --result: Jobs already run will be
2639 * --transfer and --basefile support paths relative to the --workdir by
2640 inserting /./ into the path.
2642 * GNU Parallel was cited in: fastphylo: Fast tools for phylogenetics
2643 http://www.biomedcentral.com/1471-2105/14/334/abstract
2645 * Using GNU parallel
2646 http://davetang.org/muse/2013/11/18/using-gnu-parallel/
2648 * Techlux - GNU - Parallel (German)
2649 https://techlux.de/blog/2013/11/07/gnu-parallel/
2651 * awk, sed, bzip2, grep, wc на всех ядрах
2652 http://vk.com/page-30666517_45528467
2654 * 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
2655 http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
2657 * GNU Parallel (Japanese)
2658 http://jarp.does.notwork.org/diary/201311b.html#20131117
2660 * Bug fixes and man page updates.
2665 * --transfer files with /./ in the path will copy the files relative
2668 * The maximal command length is now cached in a file halfing the
2671 * GNU Parallel was cited in: Investigating speaker gender using rhythm
2672 metrics in Arabic dialects
2673 http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
2675 * GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
2676 lastensuojelun asiakaskertomuksista
2677 https://tampub.uta.fi/handle/10024/84978
2679 * Some Additional Useful Bioinformatics Software
2680 http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
2682 * GNU Parallel Example Screen Cast (bil to Geotiff conversion)
2683 http://www.youtube.com/watch?v=PpF27eC7Mys
2685 * Using GNU Parallel to roll-your-own Map Reduce!
2686 http://www.rankfocus.com/hello-world/
2688 * Use multiple CPU Cores with your Linux commands
2689 http://www.rankfocus.com/use-cpu-cores-linux-commands/
2691 * Using GNU Parallel at HPC @ Uni.lu
2692 https://hpc.uni.lu/users/use_cases/
2694 * Scaling up with parallelization
2695 https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
2697 * How to teach yourself to be a technical tester
2698 http://infiniteundo.com/post/62421363463/qa-toc
2700 * Faster Rasters For All
2701 http://2013.foss4g.org/conf/programme/presentations/52/
2703 * Optimizing translated file downloads
2704 http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
2706 * EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
2707 http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
2709 * Best Practices for Amazon EMR
2710 http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
2712 * Computing checksums for backup
2713 https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
2715 * Un exemplu de utilizare a programului GNU parallel
2716 http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
2719 http://www.slideshare.net/drakeguan/part1-23705978
2721 * なんか気持ちよかです Gnu Parallel
2722 http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
2724 * Bug fixes and man page updates.
2729 * PDF-files of documentation is now included.
2731 * Cloning at warp speed 100 VMs in 1 minute using one command line
2732 http://www.beebotech.com.au/tag/command-line/
2734 * Calcul Quebec's introduction to GNU Parallel
2735 https://wiki.calculquebec.ca/w/GNU_parallel
2737 * Brincando com o GNU parallel
2738 http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
2740 * GNU Parallelで並列処理を行う
2741 http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
2743 * Bug fixes and man page updates.
2748 * A tutorial showing much of GNU Parallel's functionality. Spend an
2749 hour walking through the tutorial. Your commandline will love you
2750 for it. man parallel_tutorial
2752 * --line-buffer will buffer output on line basis. --group keeps the
2753 output together for a whole job. --ungroup allows output to mixup
2754 with half a line coming from one job and half a line coming from
2755 another job. --line-buffer fits between these two; it prints a full
2756 line, but will allow for mixing lines of different jobs.
2758 * --record-env records all variables and functions set. Useful to
2759 record the normal environment before using --env _.
2761 * --env _ exports all functions and variables to the remote server
2762 except for the ones recorded.
2764 * New signing key. Due to recommendations from NIST
2765 http://www.keylength.com/en/4/ the signing key was changed from
2766 1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
2768 * Agalma: an automated phylogenomics workflow
2769 http://arxiv.org/pdf/1307.6432
2771 * Job ad asking for GNU Parallel expertise
2772 http://seattle.craigslist.org/est/sof/4006079352.html
2774 * Transient Beowulf Clustering with GNU Parallel and SSHfs
2775 http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/
2777 * Aligning to unique regions
2778 http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/
2780 * Top 10 scripting tricks for basic bioinformatics
2781 http://students.washington.edu/bowmanjs/wordpress/?p=873
2783 * Using GNU Parallel to speed up and simplify data analyzes
2784 http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/
2786 * Compression of files in parallel using GNU parallel
2787 http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html
2789 * Using GNU Parallel with Amazon
2790 media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
2792 * Some useful comments on GNU Parallel
2793 https://news.ycombinator.com/item?id=6209767
2795 * Using GNU Parallel to count reads mapping to genes for multiple BAMs
2796 http://drduanehassane.com/blog/sequencing-resources
2798 * TimeMachineっぽいバックアップスクリプト
2799 http://rio.tc/2013/07/timemachine-1.html
2801 * GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
2802 http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab
2804 * Bug fixes and man page updates.
2809 * --round-robin with --pipe will write all blocks to already running
2812 * --env can now transfer Bash function for remote execution. That is
2815 * GNU Parallel was used (unfortunately with improper citation) in:
2816 Understanding the Impact of E-Commerce Software on the Adoption of Structured Data on the Web
2817 http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1
2819 * GNU Parallel was used (unfortunately with improper citation) in:
2820 CWI at TREC 2012, KBA track and Session Track
2821 http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf
2823 * Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
2824 Interactions through Optimal Wall Shaping.
2825 http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653
2827 * Using GNU parallel to convert images.
2828 http://www.brunokim.com.br/blog/?p=18
2830 * A quick way to parallelize.
2831 http://timotheepoisot.fr/2013/07/08/parallel/
2833 * GNU Parallel 20130522 ('Rana Plaza') 发布,并行作业执行.
2834 http://www.open-open.com/news/view/371301
2836 * Quite a few bug fixes and man page updates.
2841 * --xapply now recycles arguments if an input source has more
2842 arguments than others.
2844 * The sleep time between jobs is now both increased and decreased
2847 * 10 seconds installation check the signature using GnuPG if GnuPG is
2850 * Developer job asking for GNU Parallel expertise.
2851 http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central
2853 * A small utility program to run youtube-dl in parallel.
2854 https://github.com/dlh/youtube-dl-parallel
2856 * Parallelizing Freesurfer:
2857 http://blog.cogneurostats.com/?p=148
2859 * Bug fixes and man page updates.
2864 * --ctrlc is now default if --pipe is not used; thus making it
2865 possible to kill remotely started jobs simply by pressing Ctrl-C.
2867 * --timeout 200% now means kill jobs that take more than twice the
2868 time of the median run time of a job.
2870 * Jobs are now distributed round robin when having mulitiple
2871 --sshlogin instead of filling up one --sshlogin at a time.
2873 * niceload: darwin version of --io --mem --swap. Thanks to Anders F
2876 * Bug fixes and man page updates.
2881 * 10 seconds installation: wget -O - pi.dk/3 | sh
2883 * HPUX CPU/core detection. Thanks to Javier Tarradas.
2885 * CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
2887 * --ctrlc will send SIGINT to tasks running on remote computers and
2890 * --load now uses 'ps' to see immediately see the number of running
2891 processes instead of 'uptime' thus making --load react much faster.
2893 * Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
2894 bugs. Some of these required quite extensive changes making this
2895 release beta quality.
2897 * --retries works with --onall.
2899 * The new --load computation now works on FreeBSD 7.
2901 * --nice works under tcsh.
2903 * GNU Parallel is officially supported in NetBSD.
2904 http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html
2906 * GNU Parallel is accepted for openSUSE.
2907 http://software.opensuse.org/package/gnu_parallel
2909 * GNU Parallel can be installed under Microsoft Windows (CygWin).
2910 http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx
2912 * Excuses for not installing GNU Parallel.
2913 http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html
2915 * Job advert that requires GNU Parallel competence.
2916 http://versium.com/about/careers/
2918 * Parallelizing Batch Jobs for Fun and Profit.
2919 http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
2921 * Processing Transcription Start Sites(TSS) for the entire Mouse genome.
2922 http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/
2924 * GNU parallel is used throughout Scrimer.
2925 http://scrimer.readthedocs.org/en/latest/
2927 * GNU Parallel helped making public documents searchable.
2928 http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html
2930 * Identifying big movie files (German).
2931 http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/
2933 * Bug fixes and man page updates.
2938 * --resume works with --pipe.
2940 * --resume-failed will go through --joblog, redo the failed jobs and
2941 then continue like --resume.
2943 * Negative positional arguments count from the end: {-1} means the
2944 last argument, {-2} the second to last.
2946 * NetBSD CPU detection.
2948 * --blocksize increases exponentially if it smaller than a full
2951 * Processing n-line records (--pipe -L n) is now much faster.
2953 * --tollef is obsoleted after discussion on the mailing list.
2955 * GNU Parallel is the highest rated tool on:
2956 http://www.biostars.org/show/tools/?sort=votes&since=all%20time
2958 * GNU Parallel was loved during FSFE's #ilovefs campaign.
2959 http://fsfe.org/news/2013/news-20130212-01.en.html
2961 * Using GNU Parallel with s3cmd (Japanese).
2962 http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html
2964 * Intro to GNU Parallel (Chinese).
2965 http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/
2967 * Bug fixes and man page updates.
2972 * --sshdelay Delay starting next ssh by secs seconds. GNU parallel
2973 will pause secs seconds after starting each ssh. secs can be less
2976 * Official OpenBSD port:
2977 http://ftp.openbsd.org/ports/sysutils/parallel/
2979 * Official DragonFlyBSD package:
2980 http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/
2982 * Post about niceload in Hungarian:
2983 http://commandline.blog.hu/2013/01/02/niceload
2985 * 自炊スキャンデータをKobo Gloに最適化
2986 http://interstadial.wordpress.com/2013/01/20/
2988 * GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
2989 http://oshiire.to/archives/1686
2991 * Bug fixes and man page updates.
2996 * --shebang-wrap makes is possible to parallelize scripts by putting
2997 parallel in the shebang line (the first #! line in scripts).
2999 * --delay puts in a delay after starting each job. Useful to avoid
3000 raceconditions and thundering herd problems.
3002 * --results now uses / as separator instead of TAB and thus creates
3003 subdirs. Thanks to Drew Frank.
3005 * parallel: OpenBSD CPU detection. Thanks to Michał Markowski.
3007 * niceload --sensor allows for negative numbers to signify a lower
3008 number means the limit is lower.
3010 * niceload --prg suspend a named program that is already running.
3012 * niceload multiple --pid suspend process ids that are already running.
3014 * Convertir des images avec find et imagemagick
3015 http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html
3017 * Bug fixes and man page updates.
3022 * niceload --sensor makes it possible to use a program to control if a
3023 program should be suspended.
3025 * GNU Parallel was part of the justification for Nordic Free Software
3027 https://fsfe.org/news/2012/news-20121112-01.html
3029 * Dateien schneller packen und konvertieren mit GNU parallel
3030 http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel
3032 * Processing images from Lunar Reconnaissance Orbiter Narrow Angle
3033 Camera http://lunokhod.org/?p=774
3035 * GNU Parallel is used in types2: Type and Hapax Accumulation Curves
3036 http://www.cs.helsinki.fi/u/josuomel/types2/
3038 * GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
3039 PCA-based system for Dictionary Learning and Encoding for Robust
3041 http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
3042 http://www.cse.iitm.ac.in/~mrsri/ppca.pdf
3044 * Mapreduce avec parallel, cat et une redirection
3045 http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection
3047 * GNU Parallel for Large Batches of Small Jobs
3048 https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf
3050 * GNU Parallel used in black belt tip (8:50-10:12)
3051 https://aws.amazon.com/apac/awspodcast/episode20/
3053 * Bug fixes and man page updates.
3058 * --results structures output files so they can be imported using
3059 Pandas (http://pandas.pydata.org/). Useful when doing simulations to
3060 select output from some arguments.
3062 * Use --env to transfer environment variables through ssh to remote
3065 * GNU Parallel is accepted for Ubuntu Quantal.
3066 http://packages.ubuntu.com/quantal/parallel
3068 * GNU Parallel was requested for OpenSUSE (go vote!)
3069 https://features.opensuse.org/314461
3071 * Kneth's Korner: Map/Reduce and GNU Parallel
3072 http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html
3074 * Blog post in Japanese by Siguniang.
3075 https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
3076 (Siguniang mentions the logo is called 'The Cafe Wall Illusion')
3077 http://www.michaelbach.de/ot/ang_cafewall/index.html
3079 * GNU Parallel, where have you been all my life?
3080 http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
3082 * Reference-free ddRADseq analysis tools uses GNU Parallel.
3083 https://github.com/brantp/rtd#readme
3085 * When bash just isn’t quick enough.
3086 https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
3088 * Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
3089 http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
3091 * GNU Parallel Notes.
3092 http://xed.ch/help/parallel.html
3094 * Bug fixes and man page updates.
3099 * Due to a bugfix the main flow has changed. Making this release beta
3102 * Parallel Proxy Scraper & Checker Tool
3103 https://www.youtube.com/watch?v=iXCeR_XsP6o
3105 * Bug fixes and man page updates.
3110 * GNU Parallel was presented at Chiang Mai Bar Camp
3111 http://barcampchiangmai.org/
3113 http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/
3115 * I don't always max out all my CPUs, but when I do, I do it with GNU
3117 http://memegenerator.net/instance/22638454
3119 * Bug fixes and man page updates.
3124 * '-L n --pipe' will use records of n lines. This is useful when
3125 processing data that have fixed records with a fixed number of
3128 * --filter-hosts will remove down hosts. For each remote host: check
3129 that login through ssh works. If not: do not use this host.
3130 Currently you can not put --filter-hosts in a profile, $PARALLEL,
3131 /etc/parallel/config or similar. This is because GNU Parallel uses
3132 GNU Parallel to compute this, so you will get an infinite loop. This
3133 will likely be fixed in a later release.
3135 * --pipe now uses fork() instead of busy wait. The performance should
3136 be better on computers with >10 cores while remaining the same on
3137 computers with few cores.
3139 * GNU Parallel will be represented at Chiang Mai Bar Camp.
3140 http://barcampchiangmai.org/
3142 * Indexing Big Data on Amazon AWS: The Screencast
3143 (Check out his T-shirt at 18:40-21:00).
3144 http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/
3146 * biotoolbox uses GNU Parallel.
3147 https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper
3149 * Spiceweasel uses GNU Parallel.
3150 https://github.com/mattray/spiceweasel
3152 * GNU Parallel part of The Administrators Challenge.
3153 http://challenge.twistedrack.com/questions/qs3.php
3155 * Finding Oldest Firefox Code using GNU Parallel.
3156 http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/
3158 * Bug fixes (quite a few for remote job running) and man page updates.
3163 * Timings in --joblog now with milliseconds.
3165 * Thesis using GNU Parallel (correctly cited; hooray!).
3166 http://scholarworks.sjsu.edu/etd_projects/222/
3169 http://www.perzl.org/aix/index.php?n=Main.Parallel
3171 * Prokka uses GNU Parallel.
3172 http://bioinformatics.net.au/prokka-manual.html
3174 * GNU Parallel was presented at MUUG.
3175 http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/
3177 * Blog post: Manipulating many or large files with GNU parallel.
3178 http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html
3180 * Blog post: Running commands in parallel using bash.
3181 http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html
3183 * Blog post in Hungarian.
3184 http://commandline.blog.hu/2012/05/03/gnu_parallel
3186 * Popularity of GNU Parallel in Debian explodes.
3187 http://qa.debian.org/popcon-graph.php?packages=parallel
3189 * Bug fixes and man page updates.
3194 * A race condition bug caused restructuring of a central piece of the
3195 code. Thus this release of GNU Parallel should be considered beta
3198 * sql --dbsize will now list sizes of all databases if given no
3201 * GNU Parallel is now in Debian Unstable.
3202 apt-get install parallel
3204 * Article: Computational and experimental analyses of
3205 retrotransposon-associated minisatellite DNAs in the soybean genome.
3206 http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf
3208 * Blog post: GNU parallel - the best thing since sliced bread.
3209 https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/
3211 * Blog post: GNU Parallel makes everything faster.
3212 http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html
3214 * Blog post (German): Howto: GNU parallel.
3215 http://d24m.de/2012/04/05/howto-gnu-parallel/
3217 * Blog post: Running in Parallel
3218 http://interactivity.ifactory.com/2012/04/running-in-parallel/
3220 * 20000 watched the first intro video.
3223 * The first 5 have received their GNU Parallel merchandise
3224 https://www.gnu.org/software/parallel/merchandise.html
3226 * Bug fixes and man page updates.
3231 * Parallel Process Database Dumps.
3232 http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html
3234 * Using GNU Parallel to process images from Mars.
3235 http://lunokhod.org/?p=468
3237 * Using GNU Parallel with bzgrep.
3238 http://filip.rembialkowski.net/did-you-know-gnu-parallel/
3240 * Bug fixes and man page updates.
3245 * --workdir . will use the current working dir. If the current working
3246 dir is beneath your home dir, the value . is treated as the relative
3247 path to your home dir. This means that if your home dir is different
3248 on remote computers (e.g. if your login is different) the relative
3249 path will still be relative to your home dir.
3251 * A texinfo file is now generated from the POD file using pod2texi.
3253 * The bioinformatics article "Fast large-scale clustering of protein
3254 structures using Gauss integrals" mentions GNU Parallel. They forgot
3255 to add the reference. Please remember --bibtex if you use GNU
3256 Parallel in an article.
3257 http://bioinformatics.oxfordjournals.org/content/28/4/510.short
3259 * The first supporter received his merchandise. Did you order yours?
3260 https://www.gnu.org/software/parallel/merchandise.html
3262 * How to use GNU Parallel with samtools.
3263 http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html
3265 * How to use GNU Parallel for vacuuming PostgreSQL tables.
3266 http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/
3268 * Converting e-books with Calibre and GNU Parallel.
3269 http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/
3271 * Using GNU Parallel for tailing logfiles from multiple servers.
3272 http://silviud.blogspot.com/2012/02/shell-parallel-processing.html
3274 * Bug fixes and man page updates.
3279 * --header : uses the first input line as column names and you can
3280 then use {colname} as a replacement string in the command. This also
3281 works with multiple :::'s.
3283 * --header <regexp> matches a header as a regular expression and
3284 repeats the header for each block with --pipe.
3286 * --resume resumes from the last unfinished job. Useful if you stop
3287 GNU Parallel and restart it later with the same arguments.
3289 * niceload now propagates exit status correctly.
3291 * Show your support for GNU Parallel. For a limited time you can get a
3292 GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
3293 https://www.gnu.org/software/parallel/merchandise.html
3295 * Options -g -B -T -U -W -Y are retired as warned 6 months ago.
3297 * GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
3298 to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128
3300 * Article in IEEE Software on GNU Parallel. Thanks to Diomidis
3301 Spinellis. http://www.spinellis.gr/blog/20110911/
3303 * An article on Narwhal which uses GNU Parallel. They forgot to add
3304 the reference. Please remember --bibtex if you use GNU Parallel in
3306 http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf
3308 * Blog post on using GNU Parallel to speed up BLAST queries:
3309 http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html
3311 * Video showing Wake-on-LAN with GNU Parallel.
3312 https://www.youtube.com/watch?v=0mB-yIyKFLQ
3314 * Using GNU Parallel with Solr.
3315 http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html
3317 * First job ad including GNU Parallel:
3318 http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex
3320 * Bug fixes and man page updates.
3325 * --timeout will now kill grandchildren.
3327 * Interview in Hacker Public Radio.
3328 http://hackerpublicradio.org/eps.php?id=0860
3330 * Blog post in Chinese.
3331 http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html
3333 * Bug fixes and man page updates.
3338 * GNU Parallel package for Fedora.
3339 https://admin.fedoraproject.org/pkgdb/acls/name/parallel
3341 * Using GNU Parallel with Mozilla cross referencing.
3342 https://blog.mozilla.com/it/2011/11/15/mxr-improvements/
3344 * Neat flash presentation of GNU Parallel.
3345 http://prezi.com/0nq74b2elgtx/about-gnu-parallel/
3347 * How to create tar files of dirs in parallel.
3348 https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/
3350 * Article in Admin Network&Security by Ben Martin.
3351 http://www.admin-magazine.com/HPC/Articles/GNU-Parallel
3353 * Blog post in Polish.
3354 http://blog.tiger.com.pl/2011/01/05/gnu-parallel/
3356 * Blog post on using GNU Parallel of Mac OS X.
3357 http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/
3359 * Blog post in English by researcher.
3360 http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/
3362 * Blog entry in Chinese.
3363 http://blog.csdn.net/tossense/article/details/6889026
3365 * Blog entry in Japanese on managing many servers.
3366 http://hiroakis.com/blog/2011/11/13/gnu-parallel/
3368 * GNU Parallel is now part of ppbs.
3369 http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html
3371 * How to use GNU Parallel with MCX.
3372 http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster
3374 * Bug fixes and man page updates.
3379 * --tag prepends lines with the argument(s). If used with --(n)onall
3380 the line will be prepended with the sshlogin instead.
3382 * --shellquote does not run the command but quotes it using \'s.
3383 Useful for making quoted composed commands.
3385 * --profile can now be repeated merging multiple profiles.
3387 * --bibtex now gives the BibTeX entry.
3388 Thanks to Aleksandr Levchuk for testing.
3390 * Makefile for simple .deb package.
3391 cd packager/debian; make
3393 * sql: --list-databases lists the databases.
3395 * GNU Parallel officially in Fedora 16
3396 http://www.spinics.net/lists/fedora-package-announce/msg67130.html
3398 * Blog post on recompression FLAC audio.
3399 http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html
3401 * The most complex use of ::: I have seen so far.
3402 http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html
3404 * Example of using GNU Parallel with sudo.
3405 http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files
3407 * Use wget and gnu parallel to download mp3s at rocket speed.
3408 http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at
3410 * First CV referring to GNU Parallel.
3411 http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602
3413 * Cartwright labs usage of GNU Parallel.
3414 http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck
3416 * Bug fixes and man page updates.
3421 * --timeout implemented so that slow commands can be killed
3423 * CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.
3425 * Example of a parallel webcrawler in the man page.
3427 * Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
3428 http://wirtel.be/2011/07/15/rsync_parallel/
3430 * Blog post in Japanese.
3431 http://dminor11th.blogspot.com/2011/08/gnu-parallel.html
3433 * Blog post about optimizing JPEGs. Thanks to Thomas Jost.
3434 http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/
3436 * Bug fixes and man page updates.
3441 * niceload: --hard will suspend a program if a limit is reached - as
3442 opposed to just slowing the program down.
3444 * niceload: --soft will slow the program down - as opposed to
3445 suspending the program completely.
3447 * niceload: --run-io will slow down a program if disk io goes above a
3450 * niceload: --run-load will slow down a program if loadaverage goes
3451 above a certain limit.
3453 * niceload: --run-mem will slow down a program if free memory goes
3454 below a certain limit.
3456 * niceload: --run-noswap will slow down a program if the computer is
3459 * niceload: --start-io, --start-load, --start-mem, --start-noswap will
3460 defer starting a program until the system is below the limit.
3462 * --io, --load, --mem, and --noswap sets both --run-* and --start-*.
3464 * niceload got a major rewrite and is now object oriented.
3466 * GNU Parallel was presented at Nordic Perl Workshop 2011.
3467 http://conferences.yapceurope.org/npw2011/talk/3416
3469 * Blog post about zcat and GNU Parallel. Thanks to Dr. John.
3470 http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/
3472 * 2 blog posts in Japanese. Thanks to Negima.
3473 http://d.hatena.ne.jp/negima1976/20110607/1307412660
3474 http://d.hatena.ne.jp/negima1976/20110628/1309252494
3476 * Blog post for bioinformatics. Thanks to Chris Miller.
3477 http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/
3479 * Bug fixes and man page updates.
3484 * --onall will run all the jobs on all the computers. This is useful
3485 for systemadinistrators having multiple servers.
3487 * --nonall runs like --onall but reads no arguments from stdin
3488 (standard input), so is possible to do:
3489 parallel --nonall -S computer1,computer2 uptime
3491 * Context replace now works with multiple input sources:
3492 parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c
3494 * --noswap do not start a job on a server that is swapping.
3496 * Article: Parallel processing without Hadoop!
3497 http://www.solutionhacker.com/parallel-processing-without-hadoop/
3499 * Article in Linux Magazine (Spanish). Thanks to Ben Martin.
3500 http://www.linux-magazine.es/issue/67/
3502 * First blog post in Korean. Thanks to 민병국.
3503 http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#
3505 * Blog post in Japanese. Thanks to Naoya Nakazawa.
3506 http://www.sssg.org/blogs/naoya/archives/2003
3508 * Blog post in English. Thanks to Dagon.
3509 http://hekate.homeip.net/2011/05/29/
3511 * Bug fixes and man page updates.
3516 * Multiple ::: can be put on the command line and will be treated
3517 similar to contents from multiple -a's.
3519 * ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
3520 refer to inputs from the different input sources.
3522 * --xapply is now needed to get xapply's behaviour of reading one line
3523 from each of the input sources.
3525 * Multiple input sources will cause all combinations of arguments from
3526 the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
3527 a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
3530 * Implemented {//} for the input line with the basename removed (dirname).
3532 * New video showing the new ::: and :::: input sources.
3533 http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc
3535 * GNU Parallel now has a logo.
3536 http://www.gnu.org/software/parallel/logo.png
3538 * Article about GNU SQL in USENIX Magazine ;login: (print)
3539 http://www.usenix.org/publications/login/2011-04/
3541 * Using GNU Parallel with EC2. Thanks to Kevin Wu.
3542 http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in
3544 * Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
3545 http://d.hatena.ne.jp/ichii386/20110426
3547 * Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
3548 http://www.hollenback.net/index.php/MacportsParallel
3550 * Robert from Echo One discusses using processes instead of threads:
3551 http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/
3553 * How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
3554 http://www.kevinstock.org/2011/04/using-the-ri-cluster/
3556 * Short article about using GNU Parallel with lame:
3557 http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion
3559 * Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
3560 http://blog.clouder.jp/archives/001140.html
3562 * BBC Research & Development uses GNU Parallel:
3563 http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml
3565 * Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
3566 http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/
3568 * Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
3569 http://derek.chezmarcotte.ca/?p=286
3571 * Bug fixes and man page updates.
3576 * {#} now works as an alias for $PARALLEL_PID.
3578 * --eta now estimates way more accurately.
3580 * CPU detection code for AIX thanks to Christian Netrwal.
3582 * --joblog contains exitcode.
3584 * Thanks to Ævar Arnfjörð Bjarmason for reading my code.
3586 * GNU Parallel was presented at:
3587 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
3588 - OSAA.dk, Aarhus, 2011-04-12
3590 * Blog entry in Japanese. Thanks to Riywo.
3591 http://blog.riywo.com/2011/04/19/022802
3593 * Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
3594 J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel
3596 * First example of using GNU Parallel in Hebrew. Thanks to omry.
3599 * Intro video got past 10000 hits.
3600 http://www.youtube.com/watch?v=OpaiGYxkSuQ
3602 * Bug fixes and man page updates.
3607 * --tollef to be switch compatible with Tollef's parallel. This will
3608 cause -l to mean --load, and the argument separator will be --
3611 * --gnu will force GNU Parallel to behave like GNU Parallel even if
3614 * Site wide config file: /etc/parallel/config
3616 This should solve the issue with some packagers renaming GNU
3617 Parallel to gparallel to avoid the naming conflict.
3619 By putting --tollef in the site wide config file you can deinstall
3620 Tollef's parallel and install GNU Parallel instead without any
3621 change for users or scripts. This is useful for packagers that
3622 currently rename GNU Parallel or simply do not distribute GNU
3623 Parallel because the command name conflicts with Tollef's parallel.
3625 * -L 0 -n 0, and -N 0 implemented. They will read one argument,
3626 but insert 0 arguments on the command line. Useful if you just want
3627 to run the same command with the same arguments a number of times.
3629 * GNU Parallel is now in Fink. Thanks to Jesse Alama.
3630 http://pdb.finkproject.org/pdb/package.php/parallel
3632 * Opscode Cookbook for Chef. Thanks to Joshua Timberman.
3633 https://github.com/opscode/cookbooks/tree/master/gnu_parallel
3635 * Man page examples translated into Japanese. Thanks to Koshigoe.
3636 http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13
3638 * GNU Parallel will be presented at:
3639 - LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
3640 - OSAA.dk, Aarhus, 2011-04-12
3642 * Video of presentation from FSCONS 2010-11-07. The presenter was
3643 _really_ hoarse that day (Something to do with loads of alcohol the
3644 night before). http://vimeo.com/20838834
3646 * Review with examples in German. Thanks to M. Nieberg.
3647 http://kenntwas.de/2011/linux/gnu-parallel/
3649 * A review of the --pipe option in German. Thanks to Mathias Huber.
3650 http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten
3652 * A small example of grepping maillogs. Thanks to François Maillet.
3653 http://www.francoismaillet.com/blog/?p=399
3655 * Using GNU Parallel instead of xargs. Thanks to James Cuff.
3656 http://blog.jcuff.net/2011/02/on-train-ride-in.html
3658 * Bug fixes and man page updates.
3663 * --pipe splits piped data into blocks. Each block is piped to a
3664 program for processing. The piping and the programs will be run in
3665 parallel. Useful if the data you want to process is data for a
3666 program and not arguments.
3668 * --blocksize sets the blocksize in bytes for --pipe. The blocksize is
3669 approximate. It can deviate as much as the size of one record.
3672 * --recstart sets the string matching the start of a
3673 record. Default is "".
3675 * --recend sets the string matching the end of a
3676 record. Default is '\n'. To specify none use --recend "".
3678 If both --recstart and --recend are set, the end of a record must be
3679 followed immediately by a start of a record. This is useful if
3680 either recend or recstart can occur in the middle of a record.
3682 * --remove-rec-sep removes the string matched by --recstart and
3685 * --regexp will make GNU Parallel treat --recstart and --recend as
3686 regular expressions.
3688 * --output-as-files will put the output of the programs into files and
3689 instead of giving the output GNU Parallel will output the name of
3692 * -N if used with --pipe sets the number of records to read.
3694 * New video showing --pipe at
3695 http://www.youtube.com/watch?v=1ntxT-47VPA
3697 * GNU Parallel was presented at FOSDEM.
3699 * Article in USENIX Magazine ;login: (print)
3700 http://www.usenix.org/publications/login/2011-02/
3702 * GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
3703 https://www.ohloh.net/p/gnu-parallel
3705 * Advanced recursive example. Thanks to Ruarí Ødegaard.
3706 http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu
3708 * Small example on using GNU Parallel through 0install (German).
3709 http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/
3711 * Bug fixes and man page updates.
3716 * --joblog makes a simple log of completed jobs.
3718 * -X now spreads arguments between job slots when reaching last
3719 argument. Use -j1 to avoid this.
3721 * People on the email list have voted -j+0 to be the new default
3724 * First review in Polish. Thanks to Patryk Krawaczyński.
3725 http://nfsec.pl/root/2458
3727 * Review in Spanish (in print).
3728 https://www.linux-magazine.es/issue/67/moreinfo.html
3730 * Review in English. Thanks to Brian Gough.
3731 http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/
3733 * Review in French. Thanks to Denis Dordoigne.
3734 http://linuxfr.org/2010/12/29/27715.html
3736 * Review in Spanish.
3737 http://gufete.net/index.php?entry=entry110116-200022
3739 * Article with advanced recursive example. Thanks to Ruarí Ødegaard
3740 http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel
3742 * Use case for memcache.
3743 http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/
3745 * Bug fixes and man page updates.
3750 * GNU niceload is now part of GNU Parallel. GNU niceload slows down a
3751 program if the load average is above a certain limit.
3753 * Implemented --tmpdir to buffer standard output and standard error in
3756 * Implemented --load to wait until the load is below a limit before
3757 starting another job on that computer.
3759 * Implemented --nice set the niceness of jobs running both locally and
3762 * Implemented --dry-run to print the job without running it.
3764 * Implemented --tty as the old default of assigning a tty to the first
3765 job causes problems.
3767 * Review with focus on clusters. Thanks to Taylor Gillespie
3768 http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html
3770 * Review with focus on protein similarity.
3771 http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel
3773 * Review in Spanish.
3774 http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux
3776 * Quite a few bug fixes and man page updates.
3781 * Implemented {/} for the input line with the path removed (basename).
3783 * Implemented {/.} for the input line with extension and path removed
3786 * Output from --progress is now sent to standard error instead of
3789 * --eta was broken and counted down from 0. Now fixed.
3791 * Standard output and standard error are flushed after every job so if
3792 standard output does not end with a newline it will still be grouped
3793 with the rest of standard output.
3795 * --command, -c, --file, and -f are now removed as options. They were
3796 never used in practice.
3798 * GetOptionsFromArray rewritten to work with old Perl libraries.
3800 * The file COPYING now contains the GNU General Public License 3
3802 * Major rewrite to make the code more object oriented and easier to
3803 maintain in the future.
3808 * Using -j myfile the number of jobs can be changed while GNU Parallel
3809 is running simply by changing the content of myfile.
3811 * Implemented --profile to use different .parallel/config for
3812 different situations.
3814 * Ugly newlines in $PARALLEL and .parallel/config are no longer
3815 needed. Instead you have to use \ in front of special shell
3818 * --workdir puts the files transferred to remote machines in a
3819 specified directory.
3821 * $PARALLEL_PID is set to the process id of GNU Parallel.
3823 * $PARALLEL_SEQ is set to the sequence number of the job.
3825 * -v now only shows the command to run. Use -v -v to show the
3828 * Slow spawning error is now only a warning.
3830 * If stdin is a tty and input is read from stdin you now get a
3833 * GNU sql: \n and \x0a in arguments is replaced with newline.
3835 * Patch for Debian package and spelling mistakes. Thanks to Rogério
3836 Brito <rbrito at ime dot usp dot br>
3838 * Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
3839 palardy at gmail dot com>
3841 * FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>
3843 * Pardus package. Thanks to Fethican Coşkuner
3844 <fethicanc at gmail dot com>
3846 * First review in Chinese. Thanks to 曾義峰:
3847 http://antbsd.twbbs.org/~ant/wordpress/?p=2876
3849 * First review in print:
3850 http://www.linux-magazine.com/Issues/2010 Nov 2010
3852 * First review in Spanish:
3853 http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando
3855 * First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
3857 http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html
3859 * Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
3860 http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life
3862 * 5000 views of the intro video:
3863 http://www.youtube.com/watch?v=OpaiGYxkSuQ
3865 * As usual a bunch of bugfixes and more usage examples in the man
3868 * GNU Parallel was presented at FSCONS 2010-11-07:
3869 http://www.fscons.org/fs/gnu-parallel Hopefully the
3870 video will be online soon.
3875 * See GNU Parallel live at FSCONS 2010-11-07:
3876 http://www.fscons.org/fs/gnu-parallel
3878 * Untested Debian and xUbuntu packages available through OpenSUSE
3880 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
3882 * Using --retries a job will be retried on another computer if it
3883 fails. This is useful if some jobs fail for no apparent reason (such
3884 as network failure).
3886 * BSD xargs -o (open /dev/tty) is now default for the job running in
3887 foreground. Useful for interactive commands like:
3888 ls | parallel -Xuj1 vi
3890 * GNU sql now supports SQLite.
3892 * Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.
3894 * GNU sql now support --list-tables
3896 * Alias for DBURL can contain '?query' part with %-quoting.
3901 * Using --shebang GNU Parallel can be used as the parser for a script.
3902 E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
3905 * First community generated bugfixes
3907 * Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
3908 at altlinux dot org>
3910 * Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
3911 <sunfreeware at gmail.com>
3913 * Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
3914 available through OpenSUSE build service:
3915 https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
3917 * Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
3918 http://www.andrew-mcfague.com/linux/utilities-linux/
3919 commands-every-serious-nix-user-should-know/#parallel
3921 * First 1000 views of the intro video
3923 * sql - a small script to access sql bases from the command line which
3924 is a handy companion to parallel --colsep
3929 * Counting semaphore functionality: start a job in the background. If
3930 N jobs are already running, wait for one to complete. Examples:
3931 sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
3932 sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait
3934 * With --colsep a table can be used as input. Example:
3935 cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}
3937 * --trim can remove white space around arguments.
3939 * --sshloginfile '..' means use ~/.parallel/sshloginfile
3941 * Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
3944 * OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
3947 * NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>
3949 * Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
3950 Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>
3952 * Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
3953 Thanks to Phil Sung <psung at alum dot mit dot edu>
3958 * Arguments can now be given on the command line. Example:
3959 parallel bzip2 ::: *.txt
3961 * xapply like functionality. Example:
3962 parallel diff {1} {2} :::: filelist1 filelist2
3963 parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2
3965 * Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>
3967 * Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
3970 * -L -l -n -s now implies -X unless -m is set
3975 * New video showing the new options.
3976 http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
3977 http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/
3979 * 100% options complete with xargs. All options for xargs can now be
3980 used in GNU Parallel - even the more exotic.
3982 * --basefile for transferring basedata. When running jobs on remote
3983 computers --basefile will transfer files before the first jobs is
3984 run. It can be used to transfer data that remains the same for each
3985 job such as scripts or lookup tables.
3987 * --progress shows progress. To see how many jobs is running on each
3988 server use --progress. It can be turned on even after GNU Parallel
3991 * --eta shows estimated time left in seconds.
3993 * --halt-on-error stops if an error occurs. GNU Parallel will default
3994 to run all jobs - even if some of them fail. With --halt-on-error
3995 GNU Parallel can ignore errors, wait for the currently running jobs
3996 to finish, or stop immediately when an error occurs.
4001 * GNU Parallel now has support for running jobs on remote machines
4003 * Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
4004 http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech
4009 * GNU Parallel is now official GNU software