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1 ;;; ob-tangle.el --- Extract Source Code From Org Files -*- lexical-binding: t; -*-
3 ;; Copyright (C) 2009-2018 Free Software Foundation, Inc.
5 ;; Author: Eric Schulte
6 ;; Keywords: literate programming, reproducible research
7 ;; Homepage: https://orgmode.org
9 ;; This file is part of GNU Emacs.
11 ;; GNU Emacs is free software: you can redistribute it and/or modify
12 ;; it under the terms of the GNU General Public License as published by
13 ;; the Free Software Foundation, either version 3 of the License, or
14 ;; (at your option) any later version.
16 ;; GNU Emacs is distributed in the hope that it will be useful,
17 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
18 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
19 ;; GNU General Public License for more details.
21 ;; You should have received a copy of the GNU General Public License
22 ;; along with GNU Emacs. If not, see <https://www.gnu.org/licenses/>.
24 ;;; Commentary:
26 ;; Extract the code from source blocks out into raw source-code files.
28 ;;; Code:
30 (require 'cl-lib)
31 (require 'org-src)
32 (require 'org-macs)
34 (declare-function make-directory "files" (dir &optional parents))
35 (declare-function org-at-heading-p "org" (&optional ignored))
36 (declare-function org-babel-update-block-body "ob-core" (new-body))
37 (declare-function org-back-to-heading "org" (&optional invisible-ok))
38 (declare-function org-before-first-heading-p "org" ())
39 (declare-function org-element-at-point "org-element" ())
40 (declare-function org-element-type "org-element" (element))
41 (declare-function org-fill-template "org" (template alist))
42 (declare-function org-heading-components "org" ())
43 (declare-function org-in-commented-heading-p "org" (&optional no-inheritance))
44 (declare-function org-link-escape "org" (text &optional table merge))
45 (declare-function org-open-link-from-string "org" (s &optional arg reference-buffer))
46 (declare-function org-remove-indentation "org" (code &optional n))
47 (declare-function org-store-link "org" (arg))
48 (declare-function org-trim "org" (s &optional keep-lead))
49 (declare-function outline-previous-heading "outline" ())
50 (declare-function org-id-find "org-id" (id &optional markerp))
52 (defvar org-link-types-re)
54 (defcustom org-babel-tangle-lang-exts
55 '(("emacs-lisp" . "el")
56 ("elisp" . "el"))
57 "Alist mapping languages to their file extensions.
58 The key is the language name, the value is the string that should
59 be inserted as the extension commonly used to identify files
60 written in this language. If no entry is found in this list,
61 then the name of the language is used."
62 :group 'org-babel-tangle
63 :version "24.1"
64 :type '(repeat
65 (cons
66 (string "Language name")
67 (string "File Extension"))))
69 (defcustom org-babel-tangle-use-relative-file-links t
70 "Use relative path names in links from tangled source back the Org file."
71 :group 'org-babel-tangle
72 :type 'boolean)
74 (defcustom org-babel-post-tangle-hook nil
75 "Hook run in code files tangled by `org-babel-tangle'."
76 :group 'org-babel
77 :version "24.1"
78 :type 'hook)
80 (defcustom org-babel-pre-tangle-hook '(save-buffer)
81 "Hook run at the beginning of `org-babel-tangle'."
82 :group 'org-babel
83 :version "24.1"
84 :type 'hook)
86 (defcustom org-babel-tangle-body-hook nil
87 "Hook run over the contents of each code block body."
88 :group 'org-babel
89 :version "24.1"
90 :type 'hook)
92 (defcustom org-babel-tangle-comment-format-beg "[[%link][%source-name]]"
93 "Format of inserted comments in tangled code files.
94 The following format strings can be used to insert special
95 information into the output using `org-fill-template'.
96 %start-line --- the line number at the start of the code block
97 %file --------- the file from which the code block was tangled
98 %link --------- Org style link to the code block
99 %source-name -- name of the code block
101 Upon insertion the formatted comment will be commented out, and
102 followed by a newline. To inhibit this post-insertion processing
103 set the `org-babel-tangle-uncomment-comments' variable to a
104 non-nil value.
106 Whether or not comments are inserted during tangling is
107 controlled by the :comments header argument."
108 :group 'org-babel
109 :version "24.1"
110 :type 'string)
112 (defcustom org-babel-tangle-comment-format-end "%source-name ends here"
113 "Format of inserted comments in tangled code files.
114 The following format strings can be used to insert special
115 information into the output using `org-fill-template'.
116 %start-line --- the line number at the start of the code block
117 %file --------- the file from which the code block was tangled
118 %link --------- Org style link to the code block
119 %source-name -- name of the code block
121 Upon insertion the formatted comment will be commented out, and
122 followed by a newline. To inhibit this post-insertion processing
123 set the `org-babel-tangle-uncomment-comments' variable to a
124 non-nil value.
126 Whether or not comments are inserted during tangling is
127 controlled by the :comments header argument."
128 :group 'org-babel
129 :version "24.1"
130 :type 'string)
132 (defcustom org-babel-tangle-uncomment-comments nil
133 "Inhibits automatic commenting and addition of trailing newline
134 of tangle comments. Use `org-babel-tangle-comment-format-beg'
135 and `org-babel-tangle-comment-format-end' to customize the format
136 of tangled comments."
137 :group 'org-babel
138 :type 'boolean)
140 (defcustom org-babel-process-comment-text 'org-remove-indentation
141 "Function called to process raw Org text collected to be
142 inserted as comments in tangled source-code files. The function
143 should take a single string argument and return a string
144 result. The default value is `org-remove-indentation'."
145 :group 'org-babel
146 :version "24.1"
147 :type 'function)
149 (defun org-babel-find-file-noselect-refresh (file)
150 "Find file ensuring that the latest changes on disk are
151 represented in the file."
152 (find-file-noselect file 'nowarn)
153 (with-current-buffer (get-file-buffer file)
154 (revert-buffer t t t)))
156 (defmacro org-babel-with-temp-filebuffer (file &rest body)
157 "Open FILE into a temporary buffer execute BODY there like
158 `progn', then kill the FILE buffer returning the result of
159 evaluating BODY."
160 (declare (indent 1))
161 (let ((temp-path (make-symbol "temp-path"))
162 (temp-result (make-symbol "temp-result"))
163 (temp-file (make-symbol "temp-file"))
164 (visited-p (make-symbol "visited-p")))
165 `(let* ((,temp-path ,file)
166 (,visited-p (get-file-buffer ,temp-path))
167 ,temp-result ,temp-file)
168 (org-babel-find-file-noselect-refresh ,temp-path)
169 (setf ,temp-file (get-file-buffer ,temp-path))
170 (with-current-buffer ,temp-file
171 (setf ,temp-result (progn ,@body)))
172 (unless ,visited-p (kill-buffer ,temp-file))
173 ,temp-result)))
174 (def-edebug-spec org-babel-with-temp-filebuffer (form body))
176 ;;;###autoload
177 (defun org-babel-tangle-file (file &optional target-file lang)
178 "Extract the bodies of source code blocks in FILE.
179 Source code blocks are extracted with `org-babel-tangle'.
180 Optional argument TARGET-FILE can be used to specify a default
181 export file for all source blocks. Optional argument LANG can be
182 used to limit the exported source code blocks by language.
183 Return a list whose CAR is the tangled file name."
184 (interactive "fFile to tangle: \nP")
185 (let ((visited-p (get-file-buffer (expand-file-name file)))
186 to-be-removed)
187 (prog1
188 (save-window-excursion
189 (find-file file)
190 (setq to-be-removed (current-buffer))
191 (mapcar #'expand-file-name (org-babel-tangle nil target-file lang)))
192 (unless visited-p
193 (kill-buffer to-be-removed)))))
195 (defun org-babel-tangle-publish (_ filename pub-dir)
196 "Tangle FILENAME and place the results in PUB-DIR."
197 (unless (file-exists-p pub-dir)
198 (make-directory pub-dir t))
199 (setq pub-dir (file-name-as-directory pub-dir))
200 (mapc (lambda (el) (copy-file el pub-dir t)) (org-babel-tangle-file filename)))
202 ;;;###autoload
203 (defun org-babel-tangle (&optional arg target-file lang)
204 "Write code blocks to source-specific files.
205 Extract the bodies of all source code blocks from the current
206 file into their own source-specific files.
207 With one universal prefix argument, only tangle the block at point.
208 When two universal prefix arguments, only tangle blocks for the
209 tangle file of the block at point.
210 Optional argument TARGET-FILE can be used to specify a default
211 export file for all source blocks. Optional argument LANG can be
212 used to limit the exported source code blocks by language."
213 (interactive "P")
214 (run-hooks 'org-babel-pre-tangle-hook)
215 ;; Possibly Restrict the buffer to the current code block
216 (save-restriction
217 (save-excursion
218 (when (equal arg '(4))
219 (let ((head (org-babel-where-is-src-block-head)))
220 (if head
221 (goto-char head)
222 (user-error "Point is not in a source code block"))))
223 (let ((block-counter 0)
224 (org-babel-default-header-args
225 (if target-file
226 (org-babel-merge-params org-babel-default-header-args
227 (list (cons :tangle target-file)))
228 org-babel-default-header-args))
229 (tangle-file
230 (when (equal arg '(16))
231 (or (cdr (assq :tangle (nth 2 (org-babel-get-src-block-info 'light))))
232 (user-error "Point is not in a source code block"))))
233 path-collector)
234 (mapc ;; map over all languages
235 (lambda (by-lang)
236 (let* ((lang (car by-lang))
237 (specs (cdr by-lang))
238 (ext (or (cdr (assoc lang org-babel-tangle-lang-exts)) lang))
239 (lang-f (intern
240 (concat
241 (or (and (cdr (assoc lang org-src-lang-modes))
242 (symbol-name
243 (cdr (assoc lang org-src-lang-modes))))
244 lang)
245 "-mode")))
246 she-banged)
247 (mapc
248 (lambda (spec)
249 (let ((get-spec (lambda (name) (cdr (assoc name (nth 4 spec))))))
250 (let* ((tangle (funcall get-spec :tangle))
251 (she-bang (let ((sheb (funcall get-spec :shebang)))
252 (when (> (length sheb) 0) sheb)))
253 (tangle-mode (funcall get-spec :tangle-mode))
254 (base-name (cond
255 ((string= "yes" tangle)
256 (file-name-sans-extension
257 (nth 1 spec)))
258 ((string= "no" tangle) nil)
259 ((> (length tangle) 0) tangle)))
260 (file-name (when base-name
261 ;; decide if we want to add ext to base-name
262 (if (and ext (string= "yes" tangle))
263 (concat base-name "." ext) base-name))))
264 (when file-name
265 ;; Possibly create the parent directories for file.
266 (let ((m (funcall get-spec :mkdirp))
267 (fnd (file-name-directory file-name)))
268 (and m fnd (not (string= m "no"))
269 (make-directory fnd 'parents)))
270 ;; delete any old versions of file
271 (and (file-exists-p file-name)
272 (not (member file-name (mapcar #'car path-collector)))
273 (delete-file file-name))
274 ;; drop source-block to file
275 (with-temp-buffer
276 (when (fboundp lang-f) (ignore-errors (funcall lang-f)))
277 (when (and she-bang (not (member file-name she-banged)))
278 (insert (concat she-bang "\n"))
279 (setq she-banged (cons file-name she-banged)))
280 (org-babel-spec-to-string spec)
281 ;; We avoid append-to-file as it does not work with tramp.
282 (let ((content (buffer-string)))
283 (with-temp-buffer
284 (when (file-exists-p file-name)
285 (insert-file-contents file-name))
286 (goto-char (point-max))
287 ;; Handle :padlines unless first line in file
288 (unless (or (string= "no" (cdr (assq :padline (nth 4 spec))))
289 (= (point) (point-min)))
290 (insert "\n"))
291 (insert content)
292 (write-region nil nil file-name))))
293 ;; if files contain she-bangs, then make the executable
294 (when she-bang
295 (unless tangle-mode (setq tangle-mode #o755)))
296 ;; update counter
297 (setq block-counter (+ 1 block-counter))
298 (unless (assoc file-name path-collector)
299 (push (cons file-name tangle-mode) path-collector))))))
300 specs)))
301 (if (equal arg '(4))
302 (org-babel-tangle-single-block 1 t)
303 (org-babel-tangle-collect-blocks lang tangle-file)))
304 (message "Tangled %d code block%s from %s" block-counter
305 (if (= block-counter 1) "" "s")
306 (file-name-nondirectory
307 (buffer-file-name
308 (or (buffer-base-buffer) (current-buffer)))))
309 ;; run `org-babel-post-tangle-hook' in all tangled files
310 (when org-babel-post-tangle-hook
311 (mapc
312 (lambda (file)
313 (org-babel-with-temp-filebuffer file
314 (run-hooks 'org-babel-post-tangle-hook)))
315 (mapcar #'car path-collector)))
316 ;; set permissions on tangled files
317 (mapc (lambda (pair)
318 (when (cdr pair) (set-file-modes (car pair) (cdr pair))))
319 path-collector)
320 (mapcar #'car path-collector)))))
322 (defun org-babel-tangle-clean ()
323 "Remove comments inserted by `org-babel-tangle'.
324 Call this function inside of a source-code file generated by
325 `org-babel-tangle' to remove all comments inserted automatically
326 by `org-babel-tangle'. Warning, this comment removes any lines
327 containing constructs which resemble Org file links or noweb
328 references."
329 (interactive)
330 (goto-char (point-min))
331 (while (or (re-search-forward "\\[\\[file:.*\\]\\[.*\\]\\]" nil t)
332 (re-search-forward (org-babel-noweb-wrap) nil t))
333 (delete-region (save-excursion (beginning-of-line 1) (point))
334 (save-excursion (end-of-line 1) (forward-char 1) (point)))))
336 (defvar org-stored-links)
337 (defvar org-bracket-link-regexp)
338 (defun org-babel-spec-to-string (spec)
339 "Insert SPEC into the current file.
341 Insert the source-code specified by SPEC into the current source
342 code file. This function uses `comment-region' which assumes
343 that the appropriate major-mode is set. SPEC has the form:
345 (start-line file link source-name params body comment)"
346 (pcase-let*
347 ((`(,start ,file ,link ,source ,info ,body ,comment) spec)
348 (comments (cdr (assq :comments info)))
349 (link? (or (string= comments "both") (string= comments "link")
350 (string= comments "yes") (string= comments "noweb")))
351 (link-data `(("start-line" . ,(number-to-string start))
352 ("file" . ,file)
353 ("link" . ,link)
354 ("source-name" . ,source)))
355 (insert-comment (lambda (text)
356 (when (and comments
357 (not (string= comments "no"))
358 (org-string-nw-p text))
359 (if org-babel-tangle-uncomment-comments
360 ;; Plain comments: no processing.
361 (insert text)
362 ;; Ensure comments are made to be
363 ;; comments, and add a trailing newline.
364 ;; Also ignore invisible characters when
365 ;; commenting.
366 (comment-region
367 (point)
368 (progn (insert (org-no-properties text))
369 (point)))
370 (end-of-line)
371 (insert "\n"))))))
372 (when comment (funcall insert-comment comment))
373 (when link?
374 (funcall insert-comment
375 (org-fill-template
376 org-babel-tangle-comment-format-beg link-data)))
377 (insert body "\n")
378 (when link?
379 (funcall insert-comment
380 (org-fill-template
381 org-babel-tangle-comment-format-end link-data)))))
383 (defun org-babel-tangle-collect-blocks (&optional language tangle-file)
384 "Collect source blocks in the current Org file.
385 Return an association list of source-code block specifications of
386 the form used by `org-babel-spec-to-string' grouped by language.
387 Optional argument LANGUAGE can be used to limit the collected
388 source code blocks by language. Optional argument TANGLE-FILE
389 can be used to limit the collected code blocks by target file."
390 (let ((counter 0) last-heading-pos blocks)
391 (org-babel-map-src-blocks (buffer-file-name)
392 (let ((current-heading-pos
393 (org-with-wide-buffer
394 (org-with-limited-levels (outline-previous-heading)))))
395 (if (eq last-heading-pos current-heading-pos) (cl-incf counter)
396 (setq counter 1)
397 (setq last-heading-pos current-heading-pos)))
398 (unless (org-in-commented-heading-p)
399 (let* ((info (org-babel-get-src-block-info 'light))
400 (src-lang (nth 0 info))
401 (src-tfile (cdr (assq :tangle (nth 2 info)))))
402 (unless (or (string= src-tfile "no")
403 (and tangle-file (not (equal tangle-file src-tfile)))
404 (and language (not (string= language src-lang))))
405 ;; Add the spec for this block to blocks under its
406 ;; language.
407 (let ((by-lang (assoc src-lang blocks))
408 (block (org-babel-tangle-single-block counter)))
409 (if by-lang (setcdr by-lang (cons block (cdr by-lang)))
410 (push (cons src-lang (list block)) blocks)))))))
411 ;; Ensure blocks are in the correct order.
412 (mapcar (lambda (b) (cons (car b) (nreverse (cdr b)))) blocks)))
414 (defun org-babel-tangle-single-block (block-counter &optional only-this-block)
415 "Collect the tangled source for current block.
416 Return the list of block attributes needed by
417 `org-babel-tangle-collect-blocks'. When ONLY-THIS-BLOCK is
418 non-nil, return the full association list to be used by
419 `org-babel-tangle' directly."
420 (let* ((info (org-babel-get-src-block-info))
421 (start-line
422 (save-restriction (widen)
423 (+ 1 (line-number-at-pos (point)))))
424 (file (buffer-file-name (buffer-base-buffer)))
425 (src-lang (nth 0 info))
426 (params (nth 2 info))
427 (extra (nth 3 info))
428 (cref-fmt (or (and (string-match "-l \"\\(.+\\)\"" extra)
429 (match-string 1 extra))
430 org-coderef-label-format))
431 (link (let ((l (org-no-properties (org-store-link nil))))
432 (and (string-match org-bracket-link-regexp l)
433 (match-string 1 l))))
434 (source-name
435 (or (nth 4 info)
436 (format "%s:%d"
437 (or (ignore-errors (nth 4 (org-heading-components)))
438 "No heading")
439 block-counter)))
440 (expand-cmd (intern (concat "org-babel-expand-body:" src-lang)))
441 (assignments-cmd
442 (intern (concat "org-babel-variable-assignments:" src-lang)))
443 (body
444 ;; Run the tangle-body-hook.
445 (let ((body (if (org-babel-noweb-p params :tangle)
446 (org-babel-expand-noweb-references info)
447 (nth 1 info))))
448 (with-temp-buffer
449 (insert
450 ;; Expand body in language specific manner.
451 (cond ((assq :no-expand params) body)
452 ((fboundp expand-cmd) (funcall expand-cmd body params))
454 (org-babel-expand-body:generic
455 body params (and (fboundp assignments-cmd)
456 (funcall assignments-cmd params))))))
457 (when (string-match "-r" extra)
458 (goto-char (point-min))
459 (while (re-search-forward
460 (replace-regexp-in-string "%s" ".+" cref-fmt) nil t)
461 (replace-match "")))
462 (run-hooks 'org-babel-tangle-body-hook)
463 (buffer-string))))
464 (comment
465 (when (or (string= "both" (cdr (assq :comments params)))
466 (string= "org" (cdr (assq :comments params))))
467 ;; From the previous heading or code-block end
468 (funcall
469 org-babel-process-comment-text
470 (buffer-substring
471 (max (condition-case nil
472 (save-excursion
473 (org-back-to-heading t) ; Sets match data
474 (match-end 0))
475 (error (point-min)))
476 (save-excursion
477 (if (re-search-backward
478 org-babel-src-block-regexp nil t)
479 (match-end 0)
480 (point-min))))
481 (point)))))
482 (result
483 (list start-line
484 (if org-babel-tangle-use-relative-file-links
485 (file-relative-name file)
486 file)
487 (if (and org-babel-tangle-use-relative-file-links
488 (string-match org-link-types-re link)
489 (string= (match-string 0 link) "file"))
490 (concat "file:"
491 (file-relative-name (match-string 1 link)
492 (file-name-directory
493 (cdr (assq :tangle params)))))
494 link)
495 source-name
496 params
497 (if org-src-preserve-indentation
498 (org-trim body t)
499 (org-trim (org-remove-indentation body)))
500 comment)))
501 (if only-this-block
502 (list (cons src-lang (list result)))
503 result)))
505 (defun org-babel-tangle-comment-links (&optional info)
506 "Return a list of begin and end link comments for the code block at point."
507 (let ((link-data
508 `(("start-line" . ,(number-to-string
509 (org-babel-where-is-src-block-head)))
510 ("file" . ,(buffer-file-name))
511 ("link" . ,(org-link-escape
512 (progn
513 (call-interactively #'org-store-link)
514 (org-no-properties (car (pop org-stored-links))))))
515 ("source-name" .
516 ,(nth 4 (or info (org-babel-get-src-block-info 'light)))))))
517 (list (org-fill-template org-babel-tangle-comment-format-beg link-data)
518 (org-fill-template org-babel-tangle-comment-format-end link-data))))
520 ;; de-tangling functions
521 (defvar org-bracket-link-analytic-regexp)
522 (defun org-babel-detangle (&optional source-code-file)
523 "Propagate changes in source file back original to Org file.
524 This requires that code blocks were tangled with link comments
525 which enable the original code blocks to be found."
526 (interactive)
527 (save-excursion
528 (when source-code-file (find-file source-code-file))
529 (goto-char (point-min))
530 (let ((counter 0) new-body end)
531 (while (re-search-forward org-bracket-link-analytic-regexp nil t)
532 (when (re-search-forward
533 (concat " " (regexp-quote (match-string 5)) " ends here"))
534 (setq end (match-end 0))
535 (forward-line -1)
536 (save-excursion
537 (when (setq new-body (org-babel-tangle-jump-to-org))
538 (org-babel-update-block-body new-body)))
539 (setq counter (+ 1 counter)))
540 (goto-char end))
541 (prog1 counter (message "Detangled %d code blocks" counter)))))
543 (defun org-babel-tangle-jump-to-org ()
544 "Jump from a tangled code file to the related Org mode file."
545 (interactive)
546 (let ((mid (point))
547 start body-start end
548 target-buffer target-char link path block-name body)
549 (save-window-excursion
550 (save-excursion
551 (while (and (re-search-backward org-bracket-link-analytic-regexp nil t)
552 (not ; ever wider searches until matching block comments
553 (and (setq start (line-beginning-position))
554 (setq body-start (line-beginning-position 2))
555 (setq link (match-string 0))
556 (setq path (match-string 3))
557 (setq block-name (match-string 5))
558 (save-excursion
559 (save-match-data
560 (re-search-forward
561 (concat " " (regexp-quote block-name)
562 " ends here") nil t)
563 (setq end (line-beginning-position))))))))
564 (unless (and start (< start mid) (< mid end))
565 (error "Not in tangled code"))
566 (setq body (buffer-substring body-start end)))
567 (when (string-match "::" path)
568 (setq path (substring path 0 (match-beginning 0))))
569 (find-file (or (car (org-id-find path)) path))
570 (setq target-buffer (current-buffer))
571 ;; Go to the beginning of the relative block in Org file.
572 (org-open-link-from-string link)
573 (if (string-match "[^ \t\n\r]:\\([[:digit:]]+\\)" block-name)
574 (let ((n (string-to-number (match-string 1 block-name))))
575 (if (org-before-first-heading-p) (goto-char (point-min))
576 (org-back-to-heading t))
577 ;; Do not skip the first block if it begins at point min.
578 (cond ((or (org-at-heading-p)
579 (not (eq (org-element-type (org-element-at-point))
580 'src-block)))
581 (org-babel-next-src-block n))
582 ((= n 1))
583 (t (org-babel-next-src-block (1- n)))))
584 (org-babel-goto-named-src-block block-name))
585 (goto-char (org-babel-where-is-src-block-head))
586 ;; Preserve location of point within the source code in tangled
587 ;; code file.
588 (forward-line 1)
589 (forward-char (- mid body-start))
590 (setq target-char (point)))
591 (org-src-switch-to-buffer target-buffer t)
592 (goto-char target-char)
593 body))
595 (provide 'ob-tangle)
597 ;; Local variables:
598 ;; generated-autoload-file: "org-loaddefs.el"
599 ;; End:
601 ;;; ob-tangle.el ends here