1 ;;; ob.el --- working with code blocks in org-mode
3 ;; Copyright (C) 2009-2011 Free Software Foundation, Inc.
5 ;; Author: Eric Schulte
7 ;; Keywords: literate programming, reproducible research
8 ;; Homepage: http://orgmode.org
10 ;; This file is part of GNU Emacs.
12 ;; GNU Emacs is free software: you can redistribute it and/or modify
13 ;; it under the terms of the GNU General Public License as published by
14 ;; the Free Software Foundation, either version 3 of the License, or
15 ;; (at your option) any later version.
17 ;; GNU Emacs is distributed in the hope that it will be useful,
18 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
19 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
20 ;; GNU General Public License for more details.
22 ;; You should have received a copy of the GNU General Public License
23 ;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>.
31 (defvar org-babel-call-process-region-original
)
32 (defvar org-src-lang-modes
)
33 (defvar org-babel-library-of-babel
)
34 (declare-function show-all
"outline" ())
35 (declare-function tramp-compat-make-temp-file
"tramp-compat"
36 (filename &optional dir-flag
))
37 (declare-function tramp-dissect-file-name
"tramp" (name &optional nodefault
))
38 (declare-function tramp-file-name-user
"tramp" (vec))
39 (declare-function tramp-file-name-host
"tramp" (vec))
40 (declare-function with-parsed-tramp-file-name
"tramp" (filename var
&rest body
))
41 (declare-function org-icompleting-read
"org" (&rest args
))
42 (declare-function org-edit-src-code
"org-src"
43 (&optional context code edit-buffer-name quietp
))
44 (declare-function org-edit-src-exit
"org-src" (&optional context
))
45 (declare-function org-open-at-point
"org" (&optional in-emacs reference-buffer
))
46 (declare-function org-save-outline-visibility
"org" (use-markers &rest body
))
47 (declare-function org-outline-overlay-data
"org" (&optional use-markers
))
48 (declare-function org-set-outline-overlay-data
"org" (data))
49 (declare-function org-narrow-to-subtree
"org" ())
50 (declare-function org-entry-get
"org"
51 (pom property
&optional inherit literal-nil
))
52 (declare-function org-make-options-regexp
"org" (kwds &optional extra
))
53 (declare-function org-do-remove-indentation
"org" (&optional n
))
54 (declare-function org-show-context
"org" (&optional key
))
55 (declare-function org-at-table-p
"org" (&optional table-type
))
56 (declare-function org-cycle
"org" (&optional arg
))
57 (declare-function org-uniquify
"org" (list))
58 (declare-function org-current-level
"org" ())
59 (declare-function org-table-import
"org-table" (file arg
))
60 (declare-function org-add-hook
"org-compat"
61 (hook function
&optional append local
))
62 (declare-function org-table-align
"org-table" ())
63 (declare-function org-table-end
"org-table" (&optional table-type
))
64 (declare-function orgtbl-to-generic
"org-table" (table params
))
65 (declare-function orgtbl-to-orgtbl
"org-table" (table params
))
66 (declare-function org-babel-tangle-comment-links
"ob-tangle" (&optional info
))
67 (declare-function org-babel-lob-get-info
"ob-lob" nil
)
68 (declare-function org-babel-ref-split-args
"ob-ref" (arg-string))
69 (declare-function org-babel-ref-parse
"ob-ref" (assignment))
70 (declare-function org-babel-ref-resolve
"ob-ref" (ref))
71 (declare-function org-babel-ref-goto-headline-id
"ob-ref" (id))
72 (declare-function org-babel-ref-headline-body
"ob-ref" ())
73 (declare-function org-babel-lob-execute-maybe
"ob-lob" ())
74 (declare-function org-babel-map-call-lines
"ob-lob" (file &rest body
))
75 (declare-function org-number-sequence
"org-compat" (from &optional to inc
))
76 (declare-function org-at-item-p
"org-list" ())
77 (declare-function org-list-parse-list
"org-list" (&optional delete
))
78 (declare-function org-list-to-generic
"org-list" (LIST PARAMS
))
79 (declare-function org-list-struct
"org-list" ())
80 (declare-function org-list-prevs-alist
"org-list" (struct))
81 (declare-function org-list-get-list-end
"org-list" (item struct prevs
))
83 (defgroup org-babel nil
84 "Code block evaluation and management in `org-mode' documents."
88 (defcustom org-confirm-babel-evaluate t
89 "Confirm before evaluation.
90 Require confirmation before interactively evaluating code
91 blocks in Org-mode buffers. The default value of this variable
92 is t, meaning confirmation is required for any code block
93 evaluation. This variable can be set to nil to inhibit any
94 future confirmation requests. This variable can also be set to a
95 function which takes two arguments the language of the code block
96 and the body of the code block. Such a function should then
97 return a non-nil value if the user should be prompted for
98 execution or nil if no prompt is required.
100 Warning: Disabling confirmation may result in accidental
101 evaluation of potentially harmful code. It may be advisable
102 remove code block execution from C-c C-c as further protection
103 against accidental code block evaluation. The
104 `org-babel-no-eval-on-ctrl-c-ctrl-c' variable can be used to
105 remove code block execution from the C-c C-c keybinding."
107 :type
'(choice boolean function
))
108 ;; don't allow this variable to be changed through file settings
109 (put 'org-confirm-babel-evaluate
'safe-local-variable
(lambda (x) (eq x t
)))
111 (defcustom org-babel-no-eval-on-ctrl-c-ctrl-c nil
112 "Remove code block evaluation from the C-c C-c key binding."
116 (defvar org-babel-src-name-regexp
117 "^[ \t]*#\\+name:[ \t]*"
118 "Regular expression used to match a source name line.")
120 (defvar org-babel-multi-line-header-regexp
121 "^[ \t]*#\\+headers?:[ \t]*\\([^\n]*\\)$"
122 "Regular expression used to match multi-line header arguments.")
124 (defvar org-babel-src-name-w-name-regexp
125 (concat org-babel-src-name-regexp
127 org-babel-multi-line-header-regexp
129 "\\([^ ()\f\t\n\r\v]+\\)\\(\(\\(.*\\)\)\\|\\)")
130 "Regular expression matching source name lines with a name.")
132 (defvar org-babel-src-block-regexp
134 ;; (1) indentation (2) lang
135 "^\\([ \t]*\\)#\\+begin_src[ \t]+\\([^ \f\t\n\r\v]+\\)[ \t]*"
137 "\\([^\":\n]*\"[^\"\n*]*\"[^\":\n]*\\|[^\":\n]*\\)"
138 ;; (4) header arguments
141 "\\([^\000]*?\n\\)?[ \t]*#\\+end_src")
142 "Regexp used to identify code blocks.")
144 (defvar org-babel-inline-src-block-regexp
146 ;; (1) replacement target (2) lang
147 "\\(?:^\\|[^-[:alnum:]]\\)\\(src_\\([^ \f\t\n\r\v]+\\)"
148 ;; (3,4) (unused, headers)
149 "\\(\\|\\[\\(.*?\\)\\]\\)"
151 "{\\([^\f\n\r\v]+?\\)}\\)")
152 "Regexp used to identify inline src-blocks.")
154 (defun org-babel-get-header (params key
&optional others
)
155 "Select only header argument of type KEY from a list.
156 Optional argument OTHERS indicates that only the header that do
157 not match KEY should be returned."
160 (lambda (p) (when (funcall (if others
#'not
#'identity
) (eq (car p
) key
)) p
))
163 (defun org-babel-get-inline-src-block-matches()
164 "Set match data if within body of an inline source block.
165 Returns non-nil if match-data set"
166 (let ((src-at-0-p (save-excursion
167 (beginning-of-line 1)
168 (string= "src" (thing-at-point 'word
))))
169 (first-line-p (= 1 (line-number-at-pos)))
171 (let ((search-for (cond ((and src-at-0-p first-line-p
"src_"))
172 (first-line-p "[ \t]src_")
173 (t "[ \f\t\n\r\v]src_")))
174 (lower-limit (if first-line-p
176 (- (point-at-bol) 1))))
178 (when (or (and src-at-0-p
(bobp))
179 (and (re-search-forward "}" (point-at-eol) t
)
180 (re-search-backward search-for lower-limit t
)
182 (when (looking-at org-babel-inline-src-block-regexp
)
185 (defvar org-babel-inline-lob-one-liner-regexp
)
186 (defun org-babel-get-lob-one-liner-matches()
187 "Set match data if on line of an lob one liner.
188 Returns non-nil if match-data set"
190 (unless (= (point) (point-at-bol)) ;; move before inline block
191 (re-search-backward "[ \f\t\n\r\v]" nil t
))
192 (if (looking-at org-babel-inline-lob-one-liner-regexp
)
196 (defun org-babel-get-src-block-info (&optional light
)
197 "Get information on the current source block.
199 Optional argument LIGHT does not resolve remote variable
200 references; a process which could likely result in the execution
201 of other code blocks.
204 (language body header-arguments-alist switches name indent)."
205 (let ((case-fold-search t
) head info name indent
)
207 (if (setq head
(org-babel-where-is-src-block-head))
210 (setq info
(org-babel-parse-src-block-match))
211 (setq indent
(car (last info
)))
212 (setq info
(butlast info
))
213 (while (and (forward-line -
1)
214 (looking-at org-babel-multi-line-header-regexp
))
216 (org-babel-merge-params
218 (org-babel-parse-header-arguments (match-string 1)))))
219 (when (looking-at org-babel-src-name-w-name-regexp
)
220 (setq name
(org-babel-clean-text-properties (match-string 3)))
221 (when (and (match-string 5) (> (length (match-string 5)) 0))
222 (setf (nth 2 info
) ;; merge functional-syntax vars and header-args
223 (org-babel-merge-params
225 (lambda (ref) (cons :var ref
))
227 (lambda (var) ;; check that each variable is initialized
228 (if (string-match ".+=.+" var
)
231 "variable \"%s\"%s must be assigned a default value"
232 var
(if name
(format " in block \"%s\"" name
) ""))))
233 (org-babel-ref-split-args (match-string 5))))
235 ;; inline source block
236 (when (org-babel-get-inline-src-block-matches)
237 (setq info
(org-babel-parse-inline-src-block-match))))
238 ;; resolve variable references and add summary parameters
239 (when (and info
(not light
))
240 (setf (nth 2 info
) (org-babel-process-params (nth 2 info
))))
241 (when info
(append info
(list name indent
)))))
243 (defun org-babel-confirm-evaluate (info)
244 "Confirm evaluation of the code block INFO.
245 This behavior can be suppressed by setting the value of
246 `org-confirm-babel-evaluate' to nil, in which case all future
247 interactive code block evaluations will proceed without any
248 confirmation from the user.
250 Note disabling confirmation may result in accidental evaluation
251 of potentially harmful code."
252 (let* ((eval (or (cdr (assoc :eval
(nth 2 info
)))
253 (when (assoc :noeval
(nth 2 info
)) "no")))
254 (query (cond ((equal eval
"query") t
)
255 ((and org-current-export-file
256 (equal eval
"query-export")) t
)
257 ((functionp org-confirm-babel-evaluate
)
258 (funcall org-confirm-babel-evaluate
259 (nth 0 info
) (nth 1 info
)))
260 (t org-confirm-babel-evaluate
))))
261 (if (or (equal eval
"never") (equal eval
"no")
262 (and org-current-export-file
(or (equal eval
"no-export")
263 (equal eval
"never-export")))
266 (format "Evaluate this%scode block%son your system? "
267 (if info
(format " %s " (nth 0 info
)) " ")
269 (format " (%s) " (nth 4 info
)) " "))))))
270 (prog1 nil
(message "Evaluation %s"
271 (if (or (equal eval
"never") (equal eval
"no")
272 (equal eval
"no-export")
273 (equal eval
"never-export"))
274 "Disabled" "Aborted")))
278 (defun org-babel-execute-safely-maybe ()
279 (unless org-babel-no-eval-on-ctrl-c-ctrl-c
280 (org-babel-execute-maybe)))
282 (add-hook 'org-ctrl-c-ctrl-c-hook
'org-babel-execute-safely-maybe
)
285 (defun org-babel-execute-maybe ()
287 (or (org-babel-execute-src-block-maybe)
288 (org-babel-lob-execute-maybe)))
290 (defun org-babel-execute-src-block-maybe ()
291 "Conditionally execute a source block.
292 Detect if this is context for a Babel src-block and if so
293 then run `org-babel-execute-src-block'."
295 (let ((info (org-babel-get-src-block-info)))
297 (progn (org-babel-eval-wipe-error-buffer)
298 (org-babel-execute-src-block current-prefix-arg info
) t
) nil
)))
301 (defun org-babel-view-src-block-info ()
302 "Display information on the current source block.
303 This includes header arguments, language and name, and is largely
304 a window into the `org-babel-get-src-block-info' function."
306 (let ((info (org-babel-get-src-block-info 'light
)))
307 (flet ((full (it) (> (length it
) 0))
308 (printf (fmt &rest args
) (princ (apply #'format fmt args
))))
310 (with-help-window (help-buffer)
311 (let ((name (nth 4 info
))
313 (switches (nth 3 info
))
314 (header-args (nth 2 info
)))
315 (when name
(printf "Name: %s\n" name
))
316 (when lang
(printf "Lang: %s\n" lang
))
317 (when (full switches
) (printf "Switches: %s\n" switches
))
318 (printf "Header Arguments:\n")
319 (dolist (pair (sort header-args
320 (lambda (a b
) (string< (symbol-name (car a
))
321 (symbol-name (car b
))))))
322 (when (full (cdr pair
))
323 (printf "\t%S%s\t%s\n"
325 (if (> (length (format "%S" (car pair
))) 7) "" "\t")
329 (defun org-babel-expand-src-block-maybe ()
330 "Conditionally expand a source block.
331 Detect if this is context for a org-babel src-block and if so
332 then run `org-babel-expand-src-block'."
334 (let ((info (org-babel-get-src-block-info)))
336 (progn (org-babel-expand-src-block current-prefix-arg info
) t
)
340 (defun org-babel-load-in-session-maybe ()
341 "Conditionally load a source block in a session.
342 Detect if this is context for a org-babel src-block and if so
343 then run `org-babel-load-in-session'."
345 (let ((info (org-babel-get-src-block-info)))
347 (progn (org-babel-load-in-session current-prefix-arg info
) t
)
350 (add-hook 'org-metaup-hook
'org-babel-load-in-session-maybe
)
353 (defun org-babel-pop-to-session-maybe ()
354 "Conditionally pop to a session.
355 Detect if this is context for a org-babel src-block and if so
356 then run `org-babel-pop-to-session'."
358 (let ((info (org-babel-get-src-block-info)))
359 (if info
(progn (org-babel-pop-to-session current-prefix-arg info
) t
) nil
)))
361 (add-hook 'org-metadown-hook
'org-babel-pop-to-session-maybe
)
363 (defconst org-babel-common-header-args-w-values
364 '((cache .
((no yes
)))
366 (colnames .
((nil no yes
)))
367 (comments .
((no link yes org both noweb
)))
369 (eval .
((never query
)))
370 (exports .
((code results both none
)))
372 (hlines .
((no yes
)))
373 (mkdirp .
((yes no
)))
376 (noweb .
((yes no tangle
)))
378 (padline .
((yes no
)))
379 (results .
((file list vector table scalar verbatim
)
380 (raw org html latex code pp wrap
)
381 (replace silent append prepend
)
383 (rownames .
((no yes
)))
387 (tangle .
((tangle yes no
:any
)))
390 (defconst org-babel-header-arg-names
391 (mapcar #'car org-babel-common-header-args-w-values
)
392 "Common header arguments used by org-babel.
393 Note that individual languages may define their own language
394 specific header arguments as well.")
396 (defvar org-babel-default-header-args
397 '((:session .
"none") (:results .
"replace") (:exports .
"code")
398 (:cache .
"no") (:noweb .
"no") (:hlines .
"no") (:tangle .
"no")
399 (:padnewline .
"yes"))
400 "Default arguments to use when evaluating a source block.")
402 (defvar org-babel-default-inline-header-args
403 '((:session .
"none") (:results .
"replace") (:exports .
"results"))
404 "Default arguments to use when evaluating an inline source block.")
406 (defvar org-babel-data-names
'("TBLNAME" "RESULTS" "NAME"))
408 (defvar org-babel-result-regexp
409 (concat "^[ \t]*#\\+"
410 (regexp-opt org-babel-data-names t
)
411 "\\(\\[\\([[:alnum:]]+\\)\\]\\)?\\:[ \t]*")
412 "Regular expression used to match result lines.
413 If the results are associated with a hash key then the hash will
414 be saved in the second match data.")
416 (defvar org-babel-result-w-name-regexp
417 (concat org-babel-result-regexp
418 "\\([^ ()\f\t\n\r\v]+\\)\\(\(\\(.*\\)\)\\|\\)"))
420 (defvar org-babel-min-lines-for-block-output
10
421 "The minimum number of lines for block output.
422 If number of lines of output is equal to or exceeds this
423 value, the output is placed in a #+begin_example...#+end_example
424 block. Otherwise the output is marked as literal by inserting
425 colons at the starts of the lines. This variable only takes
426 effect if the :results output option is in effect.")
428 (defvar org-babel-noweb-error-langs nil
429 "Languages for which Babel will raise literate programming errors.
430 List of languages for which errors should be raised when the
431 source code block satisfying a noweb reference in this language
432 can not be resolved.")
434 (defvar org-babel-hash-show
4
435 "Number of initial characters to show of a hidden results hash.")
437 (defvar org-babel-after-execute-hook nil
438 "Hook for functions to be called after `org-babel-execute-src-block'")
440 (defun org-babel-named-src-block-regexp-for-name (name)
441 "This generates a regexp used to match a src block named NAME."
442 (concat org-babel-src-name-regexp
(regexp-quote name
)
443 "\\([ \t]\\|$\\|(\\)" ".*[\r\n]"
444 (substring org-babel-src-block-regexp
1)))
446 (defun org-babel-named-data-regexp-for-name (name)
447 "This generates a regexp used to match data named NAME."
448 (concat org-babel-result-regexp
(regexp-quote name
) "\\([ \t]\\|$\\)"))
451 (defvar call-process-region
)
454 (defun org-babel-execute-src-block (&optional arg info params
)
455 "Execute the current source code block.
456 Insert the results of execution into the buffer. Source code
457 execution and the collection and formatting of results can be
458 controlled through a variety of header arguments.
460 With prefix argument ARG, force re-execution even if an existing
461 result cached in the buffer would otherwise have been returned.
463 Optionally supply a value for INFO in the form returned by
464 `org-babel-get-src-block-info'.
466 Optionally supply a value for PARAMS which will be merged with
467 the header arguments specified at the front of the source code
470 (let ((info (or info
(org-babel-get-src-block-info))))
471 (when (org-babel-confirm-evaluate info
)
472 (let* ((lang (nth 0 info
))
474 (org-babel-process-params
475 (org-babel-merge-params (nth 2 info
) params
))
477 (cache?
(and (not arg
) (cdr (assoc :cache params
))
478 (string= "yes" (cdr (assoc :cache params
)))))
479 (result-params (cdr (assoc :result-params params
)))
480 (new-hash (when cache?
(org-babel-sha1-hash info
)))
481 (old-hash (when cache?
(org-babel-current-result-hash)))
482 (body (setf (nth 1 info
)
483 (let ((noweb (cdr (assoc :noweb params
))))
485 (or (string= "yes" noweb
)
486 (string= "tangle" noweb
)))
487 (org-babel-expand-noweb-references info
)
489 (dir (cdr (assoc :dir params
)))
491 (or (and dir
(file-name-as-directory dir
)) default-directory
))
492 (org-babel-call-process-region-original
493 (if (boundp 'org-babel-call-process-region-original
)
494 org-babel-call-process-region-original
495 (symbol-function 'call-process-region
)))
496 (indent (car (last info
)))
499 (flet ((call-process-region (&rest args
)
500 (apply 'org-babel-tramp-handle-call-process-region args
)))
501 (flet ((lang-check (f)
502 (let ((f (intern (concat "org-babel-execute:" f
))))
503 (when (fboundp f
) f
))))
505 (or (lang-check lang
)
506 (lang-check (symbol-name
507 (cdr (assoc lang org-src-lang-modes
))))
508 (error "No org-babel-execute function for %s!" lang
))))
509 (if (and (not arg
) new-hash
(equal new-hash old-hash
))
510 (save-excursion ;; return cached result
511 (goto-char (org-babel-where-is-src-block-result nil info
))
512 (end-of-line 1) (forward-char 1)
513 (setq result
(org-babel-read-result))
514 (message (replace-regexp-in-string
515 "%" "%%" (format "%S" result
))) result
)
516 (message "executing %s code block%s..."
518 (if (nth 4 info
) (format " (%s)" (nth 4 info
)) ""))
521 (if (and (eq (cdr (assoc :result-type params
)) 'value
)
522 (or (member "vector" result-params
)
523 (member "table" result-params
))
524 (not (listp result
)))
525 (list (list result
)) result
))
526 (funcall cmd body params
)))
527 ;; if non-empty result and :file then write to :file
528 (when (cdr (assoc :file params
))
530 (with-temp-file (cdr (assoc :file params
))
532 (org-babel-format-result
533 result
(cdr (assoc :sep
(nth 2 info
)))))))
534 (setq result
(cdr (assoc :file params
))))
535 (org-babel-insert-result
536 result result-params info new-hash indent lang
)
537 (run-hooks 'org-babel-after-execute-hook
)
539 (setq call-process-region
'org-babel-call-process-region-original
))))))
541 (defun org-babel-expand-body:generic
(body params
&optional var-lines
)
542 "Expand BODY with PARAMS.
543 Expand a block of code with org-babel according to its header
544 arguments. This generic implementation of body expansion is
545 called for languages which have not defined their own specific
546 org-babel-expand-body:lang function."
547 (mapconcat #'identity
(append var-lines
(list body
)) "\n"))
550 (defun org-babel-expand-src-block (&optional arg info params
)
551 "Expand the current source code block.
552 Expand according to the source code block's header
553 arguments and pop open the results in a preview buffer."
555 (let* ((info (or info
(org-babel-get-src-block-info)))
557 (params (setf (nth 2 info
)
558 (sort (org-babel-merge-params (nth 2 info
) params
)
559 (lambda (el1 el2
) (string< (symbol-name (car el1
))
560 (symbol-name (car el2
)))))))
561 (body (setf (nth 1 info
)
562 (if (and (cdr (assoc :noweb params
))
563 (string= "yes" (cdr (assoc :noweb params
))))
564 (org-babel-expand-noweb-references info
) (nth 1 info
))))
565 (expand-cmd (intern (concat "org-babel-expand-body:" lang
)))
566 (assignments-cmd (intern (concat "org-babel-variable-assignments:"
569 (if (fboundp expand-cmd
) (funcall expand-cmd body params
)
570 (org-babel-expand-body:generic
571 body params
(and (fboundp assignments-cmd
)
572 (funcall assignments-cmd params
))))))
574 nil expanded
(concat "*Org-Babel Preview " (buffer-name) "[ " lang
" ]*"))))
576 (defun org-babel-edit-distance (s1 s2
)
577 "Return the edit (levenshtein) distance between strings S1 S2."
578 (let* ((l1 (length s1
))
580 (dist (map 'vector
(lambda (_) (make-vector (1+ l2
) nil
))
581 (number-sequence 1 (1+ l1
)))))
582 (flet ((in (i j
) (aref (aref dist i
) j
))
583 (mmin (&rest lst
) (apply #'min
(remove nil lst
))))
584 (setf (aref (aref dist
0) 0) 0)
585 (dolist (i (number-sequence 1 l1
))
586 (dolist (j (number-sequence 1 l2
))
587 (setf (aref (aref dist i
) j
)
588 (+ (if (equal (aref s1
(1- i
)) (aref s2
(1- j
))) 0 1)
589 (mmin (in (1- i
) j
) (in i
(1- j
)) (in (1- i
) (1- j
)))))))
593 (defun org-babel-check-src-block ()
594 "Check for misspelled header arguments in the current code block."
596 ;; TODO: report malformed code block
597 ;; TODO: report incompatible combinations of header arguments
598 ;; TODO: report uninitialized variables
599 (let ((too-close 2)) ;; <- control closeness to report potential match
600 (dolist (header (mapcar (lambda (arg) (substring (symbol-name (car arg
)) 1))
601 (and (org-babel-where-is-src-block-head)
602 (org-babel-parse-header-arguments
603 (org-babel-clean-text-properties
604 (match-string 4))))))
605 (dolist (name (mapcar #'symbol-name org-babel-header-arg-names
))
606 (when (and (not (string= header name
))
607 (<= (org-babel-edit-distance header name
) too-close
))
608 (error "supplied header \"%S\" is suspiciously close to \"%S\""
610 (message "No suspicious header arguments found.")))
613 (defun org-babel-insert-header-arg ()
614 "Insert a header argument selecting from lists of common args and values."
616 (let* ((lang (car (org-babel-get-src-block-info 'light
)))
617 (lang-headers (intern (concat "org-babel-header-arg-names:" lang
)))
618 (headers (append (if (boundp lang-headers
)
619 (mapcar (lambda (h) (cons h
:any
))
622 org-babel-common-header-args-w-values
))
623 (arg (org-icompleting-read
626 (lambda (header-spec) (symbol-name (car header-spec
)))
629 (let ((vals (cdr (assoc (intern arg
) headers
))))
635 (read-from-minibuffer "value: "))
639 (let ((arg (org-icompleting-read
641 (cons "default" (mapcar #'symbol-name group
)))))
642 (if (and arg
(not (string= "default" arg
)))
648 (defun org-babel-load-in-session (&optional arg info
)
649 "Load the body of the current source-code block.
650 Evaluate the header arguments for the source block before
651 entering the session. After loading the body this pops open the
654 (let* ((info (or info
(org-babel-get-src-block-info)))
656 (params (nth 2 info
))
657 (body (setf (nth 1 info
)
658 (if (and (cdr (assoc :noweb params
))
659 (string= "yes" (cdr (assoc :noweb params
))))
660 (org-babel-expand-noweb-references info
)
662 (session (cdr (assoc :session params
)))
663 (dir (cdr (assoc :dir params
)))
665 (or (and dir
(file-name-as-directory dir
)) default-directory
))
666 (cmd (intern (concat "org-babel-load-session:" lang
))))
667 (unless (fboundp cmd
)
668 (error "No org-babel-load-session function for %s!" lang
))
669 (pop-to-buffer (funcall cmd session body params
))
673 (defun org-babel-initiate-session (&optional arg info
)
674 "Initiate session for current code block.
675 If called with a prefix argument then resolve any variable
676 references in the header arguments and assign these variables in
677 the session. Copy the body of the code block to the kill ring."
679 (let* ((info (or info
(org-babel-get-src-block-info (not arg
))))
682 (params (nth 2 info
))
683 (session (cdr (assoc :session params
)))
684 (dir (cdr (assoc :dir params
)))
686 (or (and dir
(file-name-as-directory dir
)) default-directory
))
687 (init-cmd (intern (format "org-babel-%s-initiate-session" lang
)))
688 (prep-cmd (intern (concat "org-babel-prep-session:" lang
))))
689 (if (and (stringp session
) (string= session
"none"))
690 (error "This block is not using a session!"))
691 (unless (fboundp init-cmd
)
692 (error "No org-babel-initiate-session function for %s!" lang
))
693 (with-temp-buffer (insert (org-babel-trim body
))
694 (copy-region-as-kill (point-min) (point-max)))
696 (unless (fboundp prep-cmd
)
697 (error "No org-babel-prep-session function for %s!" lang
))
698 (funcall prep-cmd session params
))
699 (funcall init-cmd session params
)))
702 (defun org-babel-switch-to-session (&optional arg info
)
703 "Switch to the session of the current code block.
704 Uses `org-babel-initiate-session' to start the session. If called
705 with a prefix argument then this is passed on to
706 `org-babel-initiate-session'."
708 (pop-to-buffer (org-babel-initiate-session arg info
))
711 (defalias 'org-babel-pop-to-session
'org-babel-switch-to-session
)
714 (defun org-babel-switch-to-session-with-code (&optional arg info
)
715 "Switch to code buffer and display session."
719 (let ((other-window-buffer (window-buffer (next-window))))
720 (set-window-buffer (next-window) (current-buffer))
721 (set-window-buffer (selected-window) other-window-buffer
))
723 (let ((info (org-babel-get-src-block-info))
724 (org-src-window-setup 'reorganize-frame
))
726 (org-babel-switch-to-session arg info
))
730 (defmacro org-babel-do-in-edit-buffer
(&rest body
)
731 "Evaluate BODY in edit buffer if there is a code block at point.
732 Return t if a code block was found at point, nil otherwise."
733 `(let ((org-src-window-setup 'switch-invisibly
))
734 (when (and (org-babel-where-is-src-block-head)
735 (org-edit-src-code nil nil nil
))
736 (unwind-protect (progn ,@body
)
737 (if (org-bound-and-true-p org-edit-src-from-org-mode
)
738 (org-edit-src-exit)))
740 (def-edebug-spec org-babel-do-in-edit-buffer
(body))
742 (defun org-babel-do-key-sequence-in-edit-buffer (key)
743 "Read key sequence and execute the command in edit buffer.
744 Enter a key sequence to be executed in the language major-mode
745 edit buffer. For example, TAB will alter the contents of the
746 Org-mode code block according to the effect of TAB in the
747 language major-mode buffer. For languages that support
748 interactive sessions, this can be used to send code from the Org
749 buffer to the session for evaluation using the native major-mode
750 evaluation mechanisms."
751 (interactive "kEnter key-sequence to execute in edit buffer: ")
752 (org-babel-do-in-edit-buffer
754 (key-binding (or key
(read-key-sequence nil
))))))
756 (defvar org-bracket-link-regexp
)
758 (defun org-babel-open-src-block-result (&optional re-run
)
759 "If `point' is on a src block then open the results of the
760 source code block, otherwise return nil. With optional prefix
761 argument RE-RUN the source-code block is evaluated even if
762 results already exist."
764 (let ((info (org-babel-get-src-block-info)))
767 ;; go to the results, if there aren't any then run the block
768 (goto-char (or (and (not re-run
) (org-babel-where-is-src-block-result))
769 (progn (org-babel-execute-src-block)
770 (org-babel-where-is-src-block-result))))
772 (while (looking-at "[\n\r\t\f ]") (forward-char 1))
774 (if (looking-at org-bracket-link-regexp
)
777 (let ((r (org-babel-format-result
778 (org-babel-read-result) (cdr (assoc :sep
(nth 2 info
))))))
779 (pop-to-buffer (get-buffer-create "*Org-Babel Results*"))
780 (delete-region (point-min) (point-max))
785 (defmacro org-babel-map-src-blocks
(file &rest body
)
786 "Evaluate BODY forms on each source-block in FILE.
787 If FILE is nil evaluate BODY forms on source blocks in current
788 buffer. During evaluation of BODY the following local variables
789 are set relative to the currently matched code block.
791 full-block ------- string holding the entirety of the code block
792 beg-block -------- point at the beginning of the code block
793 end-block -------- point at the end of the matched code block
794 lang ------------- string holding the language of the code block
795 beg-lang --------- point at the beginning of the lang
796 end-lang --------- point at the end of the lang
797 switches --------- string holding the switches
798 beg-switches ----- point at the beginning of the switches
799 end-switches ----- point at the end of the switches
800 header-args ------ string holding the header-args
801 beg-header-args -- point at the beginning of the header-args
802 end-header-args -- point at the end of the header-args
803 body ------------- string holding the body of the code block
804 beg-body --------- point at the beginning of the body
805 end-body --------- point at the end of the body"
807 (let ((tempvar (make-symbol "file")))
808 `(let* ((,tempvar
,file
)
809 (visited-p (or (null ,tempvar
)
810 (get-file-buffer (expand-file-name ,tempvar
))))
811 (point (point)) to-be-removed
)
812 (save-window-excursion
813 (when ,tempvar
(find-file ,tempvar
))
814 (setq to-be-removed
(current-buffer))
815 (goto-char (point-min))
816 (while (re-search-forward org-babel-src-block-regexp nil t
)
817 (goto-char (match-beginning 0))
818 (let ((full-block (match-string 0))
819 (beg-block (match-beginning 0))
820 (end-block (match-end 0))
821 (lang (match-string 2))
822 (beg-lang (match-beginning 2))
823 (end-lang (match-end 2))
824 (switches (match-string 3))
825 (beg-switches (match-beginning 3))
826 (end-switches (match-end 3))
827 (header-args (match-string 4))
828 (beg-header-args (match-beginning 4))
829 (end-header-args (match-end 4))
830 (body (match-string 5))
831 (beg-body (match-beginning 5))
832 (end-body (match-end 5)))
834 (goto-char end-block
))))
835 (unless visited-p
(kill-buffer to-be-removed
))
837 (def-edebug-spec org-babel-map-src-blocks
(form body
))
840 (defmacro org-babel-map-inline-src-blocks
(file &rest body
)
841 "Evaluate BODY forms on each inline source-block in FILE.
842 If FILE is nil evaluate BODY forms on source blocks in current
845 (let ((tempvar (make-symbol "file")))
846 `(let* ((,tempvar
,file
)
847 (visited-p (or (null ,tempvar
)
848 (get-file-buffer (expand-file-name ,tempvar
))))
849 (point (point)) to-be-removed
)
850 (save-window-excursion
851 (when ,tempvar
(find-file ,tempvar
))
852 (setq to-be-removed
(current-buffer))
853 (goto-char (point-min))
854 (while (re-search-forward org-babel-inline-src-block-regexp nil t
)
855 (goto-char (match-beginning 1))
856 (save-match-data ,@body
)
857 (goto-char (match-end 0))))
858 (unless visited-p
(kill-buffer to-be-removed
))
860 (def-edebug-spec org-babel-map-inline-src-blocks
(form body
))
863 (defun org-babel-execute-buffer (&optional arg
)
864 "Execute source code blocks in a buffer.
865 Call `org-babel-execute-src-block' on every source block in
868 (org-babel-eval-wipe-error-buffer)
869 (org-save-outline-visibility t
870 (org-babel-map-src-blocks nil
871 (org-babel-execute-src-block arg
))
872 (org-babel-map-inline-src-blocks nil
873 (org-babel-execute-src-block arg
))
874 (org-babel-map-call-lines nil
875 (org-babel-lob-execute-maybe))))
878 (defun org-babel-execute-subtree (&optional arg
)
879 "Execute source code blocks in a subtree.
880 Call `org-babel-execute-src-block' on every source block in
881 the current subtree."
885 (org-narrow-to-subtree)
886 (org-babel-execute-buffer arg
)
890 (defun org-babel-sha1-hash (&optional info
)
891 "Generate an sha1 hash based on the value of info."
893 (let ((print-level nil
)
894 (info (or info
(org-babel-get-src-block-info))))
896 (sort (copy-sequence (nth 2 info
))
897 (lambda (a b
) (string< (car a
) (car b
)))))
899 (dolist (p '("replace" "silent" "append" "prepend"))
900 (setq lst
(remove p lst
)))
903 (let ((v (if (and (listp (cdr arg
)) (null (cddr arg
)))
904 (copy-sequence (cdr arg
))
906 (when (and v
(not (and (sequencep v
)
910 ((and (listp v
) ; lists are sorted
911 (member (car arg
) '(:result-params
)))
912 (sort (rm v
) #'string
<))
913 ((and (stringp v
) ; strings are sorted
914 (member (car arg
) '(:results
:exports
)))
915 (mapconcat #'identity
(sort (rm (split-string v
))
919 (when (org-called-interactively-p 'interactive
) (message hash
)) hash
)
920 (let ((it (format "%s-%s"
923 (delq nil
(mapcar (lambda (arg)
924 (let ((normalized (norm arg
)))
926 (format "%S" normalized
))))
931 (defun org-babel-current-result-hash ()
932 "Return the in-buffer hash associated with INFO."
933 (org-babel-where-is-src-block-result)
934 (org-babel-clean-text-properties (match-string 3)))
936 (defun org-babel-hide-hash ()
937 "Hide the hash in the current results line.
938 Only the initial `org-babel-hash-show' characters of the hash
939 will remain visible."
940 (add-to-invisibility-spec '(org-babel-hide-hash . t
))
942 (when (and (re-search-forward org-babel-result-regexp nil t
)
944 (let* ((start (match-beginning 3))
945 (hide-start (+ org-babel-hash-show start
))
947 (hash (match-string 3))
949 (setq ov1
(make-overlay start hide-start
))
950 (setq ov2
(make-overlay hide-start end
))
951 (overlay-put ov2
'invisible
'org-babel-hide-hash
)
952 (overlay-put ov1
'babel-hash hash
)))))
954 (defun org-babel-hide-all-hashes ()
955 "Hide the hash in the current buffer.
956 Only the initial `org-babel-hash-show' characters of each hash
957 will remain visible. This function should be called as part of
958 the `org-mode-hook'."
960 (while (re-search-forward org-babel-result-regexp nil t
)
961 (goto-char (match-beginning 0))
962 (org-babel-hide-hash)
963 (goto-char (match-end 0)))))
964 (add-hook 'org-mode-hook
'org-babel-hide-all-hashes
)
966 (defun org-babel-hash-at-point (&optional point
)
967 "Return the value of the hash at POINT.
968 The hash is also added as the last element of the kill ring.
969 This can be called with C-c C-c."
971 (let ((hash (car (delq nil
(mapcar
972 (lambda (ol) (overlay-get ol
'babel-hash
))
973 (overlays-at (or point
(point))))))))
974 (when hash
(kill-new hash
) (message hash
))))
975 (add-hook 'org-ctrl-c-ctrl-c-hook
'org-babel-hash-at-point
)
977 (defun org-babel-result-hide-spec ()
978 "Hide portions of results lines.
979 Add `org-babel-hide-result' as an invisibility spec for hiding
980 portions of results lines."
981 (add-to-invisibility-spec '(org-babel-hide-result . t
)))
982 (add-hook 'org-mode-hook
'org-babel-result-hide-spec
)
984 (defvar org-babel-hide-result-overlays nil
985 "Overlays hiding results.")
987 (defun org-babel-result-hide-all ()
988 "Fold all results in the current buffer."
990 (org-babel-show-result-all)
992 (while (re-search-forward org-babel-result-regexp nil t
)
993 (save-excursion (goto-char (match-beginning 0))
994 (org-babel-hide-result-toggle-maybe)))))
996 (defun org-babel-show-result-all ()
997 "Unfold all results in the current buffer."
998 (mapc 'delete-overlay org-babel-hide-result-overlays
)
999 (setq org-babel-hide-result-overlays nil
))
1002 (defun org-babel-hide-result-toggle-maybe ()
1003 "Toggle visibility of result at point."
1005 (let ((case-fold-search t
))
1007 (beginning-of-line 1)
1008 (looking-at org-babel-result-regexp
))
1009 (progn (org-babel-hide-result-toggle)
1010 t
) ;; to signal that we took action
1011 nil
))) ;; to signal that we did not
1013 (defun org-babel-hide-result-toggle (&optional force
)
1014 "Toggle the visibility of the current result."
1018 (if (re-search-forward org-babel-result-regexp nil t
)
1019 (let ((start (progn (beginning-of-line 2) (- (point) 1)))
1021 (while (looking-at org-babel-multi-line-header-regexp
)
1023 (goto-char (- (org-babel-result-end) 1)) (point)))
1025 (if (memq t
(mapcar (lambda (overlay)
1026 (eq (overlay-get overlay
'invisible
)
1027 'org-babel-hide-result
))
1028 (overlays-at start
)))
1029 (if (or (not force
) (eq force
'off
))
1031 (when (member ov org-babel-hide-result-overlays
)
1032 (setq org-babel-hide-result-overlays
1033 (delq ov org-babel-hide-result-overlays
)))
1034 (when (eq (overlay-get ov
'invisible
)
1035 'org-babel-hide-result
)
1036 (delete-overlay ov
)))
1037 (overlays-at start
)))
1038 (setq ov
(make-overlay start end
))
1039 (overlay-put ov
'invisible
'org-babel-hide-result
)
1040 ;; make the block accessible to isearch
1042 ov
'isearch-open-invisible
1044 (when (member ov org-babel-hide-result-overlays
)
1045 (setq org-babel-hide-result-overlays
1046 (delq ov org-babel-hide-result-overlays
)))
1047 (when (eq (overlay-get ov
'invisible
)
1048 'org-babel-hide-result
)
1049 (delete-overlay ov
))))
1050 (push ov org-babel-hide-result-overlays
)))
1051 (error "Not looking at a result line"))))
1053 ;; org-tab-after-check-for-cycling-hook
1054 (add-hook 'org-tab-first-hook
'org-babel-hide-result-toggle-maybe
)
1055 ;; Remove overlays when changing major mode
1056 (add-hook 'org-mode-hook
1057 (lambda () (org-add-hook 'change-major-mode-hook
1058 'org-babel-show-result-all
'append
'local
)))
1060 (defvar org-file-properties
)
1061 (defun org-babel-params-from-properties (&optional lang
)
1062 "Retrieve parameters specified as properties.
1063 Return an association list of any source block params which
1064 may be specified in the properties of the current outline entry."
1067 (org-babel-parse-multiple-vars
1070 (lambda (header-arg)
1071 (and (setq val
(org-entry-get (point) header-arg t
))
1072 (cons (intern (concat ":" header-arg
))
1073 (org-babel-read val
))))
1077 org-babel-header-arg-names
1079 (setq sym
(intern (concat "org-babel-header-arg-names:"
1081 (and (boundp sym
) (eval sym
)))))))))))
1083 (defvar org-src-preserve-indentation
)
1084 (defun org-babel-parse-src-block-match ()
1085 "Parse the results from a match of the `org-babel-src-block-regexp'."
1086 (let* ((block-indentation (length (match-string 1)))
1087 (lang (org-babel-clean-text-properties (match-string 2)))
1088 (lang-headers (intern (concat "org-babel-default-header-args:" lang
)))
1089 (switches (match-string 3))
1090 (body (org-babel-clean-text-properties
1091 (let* ((body (match-string 5))
1092 (sub-length (- (length body
) 1)))
1093 (if (and (> sub-length
0)
1094 (string= "\n" (substring body sub-length
)))
1095 (substring body
0 sub-length
)
1097 (preserve-indentation (or org-src-preserve-indentation
1098 (string-match "-i\\>" switches
))))
1100 ;; get block body less properties, protective commas, and indentation
1103 (insert (org-babel-strip-protective-commas body
))
1104 (unless preserve-indentation
(org-do-remove-indentation))
1106 (org-babel-merge-params
1107 org-babel-default-header-args
1108 (org-babel-params-from-properties lang
)
1109 (if (boundp lang-headers
) (eval lang-headers
) nil
)
1110 (org-babel-parse-header-arguments
1111 (org-babel-clean-text-properties (or (match-string 4) ""))))
1113 block-indentation
)))
1115 (defun org-babel-parse-inline-src-block-match ()
1116 "Parse the results from a match of the `org-babel-inline-src-block-regexp'."
1117 (let* ((lang (org-babel-clean-text-properties (match-string 2)))
1118 (lang-headers (intern (concat "org-babel-default-header-args:" lang
))))
1120 (org-babel-strip-protective-commas
1121 (org-babel-clean-text-properties (match-string 5)))
1122 (org-babel-merge-params
1123 org-babel-default-inline-header-args
1124 (org-babel-params-from-properties lang
)
1125 (if (boundp lang-headers
) (eval lang-headers
) nil
)
1126 (org-babel-parse-header-arguments
1127 (org-babel-clean-text-properties (or (match-string 4) "")))))))
1129 (defun org-babel-balanced-split (string alts
)
1130 "Split STRING on instances of ALTS.
1131 ALTS is a cons of two character options where each option may be
1132 either the numeric code of a single character or a list of
1133 character alternatives. For example to split on balanced
1134 instances of \"[ \t]:\" set ALTS to '((32 9) . 58)."
1135 (flet ((matches (ch spec
) (or (and (numberp spec
) (= spec ch
))
1139 (and (matches ch
(cdr alts
))
1140 (matches last
(car alts
)))
1141 (matches ch alts
))))
1142 (let ((balance 0) (quote nil
) (partial nil
) (lst nil
) (last 0))
1143 (mapc (lambda (ch) ; split on [], (), "" balanced instances of [ \t]:
1144 (setq balance
(+ balance
1145 (cond ((or (equal 91 ch
) (equal 40 ch
)) 1)
1146 ((or (equal 93 ch
) (equal 41 ch
)) -
1)
1148 (when (and (equal 34 ch
) (not (equal 92 last
)))
1149 (setq quote
(not quote
)))
1150 (setq partial
(cons ch partial
))
1151 (when (and (= balance
0) (not quote
) (matched ch last
))
1152 (setq lst
(cons (apply #'string
(nreverse
1159 (string-to-list string
))
1160 (nreverse (cons (apply #'string
(nreverse partial
)) lst
)))))
1162 (defun org-babel-join-splits-near-ch (ch list
)
1163 "Join splits where \"=\" is on either end of the split."
1164 (flet ((last= (str) (= ch
(aref str
(1- (length str
)))))
1165 (first= (str) (= ch
(aref str
0))))
1167 (org-reduce (lambda (acc el
)
1168 (let ((head (car acc
)))
1169 (if (and head
(or (last= head
) (first= el
)))
1170 (cons (concat head el
) (cdr acc
))
1172 list
:initial-value nil
))))
1174 (defun org-babel-parse-header-arguments (arg-string)
1175 "Parse a string of header arguments returning an alist."
1176 (when (> (length arg-string
) 0)
1177 (org-babel-parse-multiple-vars
1182 "\\([^ \f\t\n\r\v]+\\)[ \f\t\n\r\v]+\\([^ \f\t\n\r\v]+.*\\)"
1184 (cons (intern (match-string 1 arg
))
1185 (org-babel-read (org-babel-chomp (match-string 2 arg
))))
1186 (cons (intern (org-babel-chomp arg
)) nil
)))
1188 (cons (car raw
) (mapcar (lambda (r) (concat ":" r
)) (cdr raw
))))
1189 (org-babel-balanced-split arg-string
'((32 9) .
58))))))))
1191 (defun org-babel-parse-multiple-vars (header-arguments)
1192 "Expand multiple variable assignments behind a single :var keyword.
1194 This allows expression of multiple variables with one :var as
1197 #+PROPERTY: var foo=1, bar=2"
1199 (mapc (lambda (pair)
1200 (if (eq (car pair
) :var
)
1201 (mapcar (lambda (v) (push (cons :var
(org-babel-trim v
)) results
))
1202 (org-babel-join-splits-near-ch
1203 61 (org-babel-balanced-split (cdr pair
) 32)))
1204 (push pair results
)))
1206 (nreverse results
)))
1208 (defun org-babel-process-params (params)
1209 "Expand variables in PARAMS and add summary parameters."
1210 (let* ((processed-vars (mapcar (lambda (el)
1211 (if (consp (cdr el
))
1213 (org-babel-ref-parse (cdr el
))))
1214 (org-babel-get-header params
:var
)))
1215 (vars-and-names (if (and (assoc :colname-names params
)
1216 (assoc :rowname-names params
))
1217 (list processed-vars
)
1218 (org-babel-disassemble-tables
1220 (cdr (assoc :hlines params
))
1221 (cdr (assoc :colnames params
))
1222 (cdr (assoc :rownames params
)))))
1223 (raw-result (or (cdr (assoc :results params
)) ""))
1224 (result-params (append
1225 (split-string (if (stringp raw-result
)
1228 (cdr (assoc :result-params params
)))))
1230 (mapcar (lambda (var) (cons :var var
)) (car vars-and-names
))
1232 (cons :colname-names
(or (cdr (assoc :colname-names params
))
1233 (cadr vars-and-names
)))
1234 (cons :rowname-names
(or (cdr (assoc :rowname-names params
))
1235 (caddr vars-and-names
)))
1236 (cons :result-params result-params
)
1237 (cons :result-type
(cond ((member "output" result-params
) 'output
)
1238 ((member "value" result-params
) 'value
)
1240 (org-babel-get-header params
:var
'other
))))
1242 ;; row and column names
1243 (defun org-babel-del-hlines (table)
1244 "Remove all 'hlines from TABLE."
1245 (remove 'hline table
))
1247 (defun org-babel-get-colnames (table)
1248 "Return the column names of TABLE.
1249 Return a cons cell, the `car' of which contains the TABLE less
1250 colnames, and the `cdr' of which contains a list of the column
1252 (if (equal 'hline
(nth 1 table
))
1253 (cons (cddr table
) (car table
))
1254 (cons (cdr table
) (car table
))))
1256 (defun org-babel-get-rownames (table)
1257 "Return the row names of TABLE.
1258 Return a cons cell, the `car' of which contains the TABLE less
1259 colnames, and the `cdr' of which contains a list of the column
1260 names. Note: this function removes any hlines in TABLE."
1261 (flet ((trans (table) (apply #'mapcar
* #'list table
)))
1262 (let* ((width (apply 'max
1263 (mapcar (lambda (el) (if (listp el
) (length el
) 0)) table
)))
1264 (table (trans (mapcar (lambda (row)
1265 (if (not (equal row
'hline
))
1269 (setq row
(cons 'hline row
)))
1272 (cons (mapcar (lambda (row) (if (equal (car row
) 'hline
) 'hline row
))
1273 (trans (cdr table
)))
1274 (remove 'hline
(car table
))))))
1276 (defun org-babel-put-colnames (table colnames
)
1277 "Add COLNAMES to TABLE if they exist."
1278 (if colnames
(apply 'list colnames
'hline table
) table
))
1280 (defun org-babel-put-rownames (table rownames
)
1281 "Add ROWNAMES to TABLE if they exist."
1283 (mapcar (lambda (row)
1285 (cons (or (pop rownames
) "") row
)
1289 (defun org-babel-pick-name (names selector
)
1290 "Select one out of an alist of row or column names.
1291 SELECTOR can be either a list of names in which case those names
1292 will be returned directly, or an index into the list NAMES in
1293 which case the indexed names will be return."
1294 (if (listp selector
)
1297 (if (and selector
(symbolp selector
) (not (equal t selector
)))
1298 (cdr (assoc selector names
))
1299 (if (integerp selector
)
1300 (nth (- selector
1) names
)
1301 (cdr (car (last names
))))))))
1303 (defun org-babel-disassemble-tables (vars hlines colnames rownames
)
1304 "Parse tables for further processing.
1305 Process the variables in VARS according to the HLINES,
1306 ROWNAMES and COLNAMES header arguments. Return a list consisting
1307 of the vars, cnames and rnames."
1308 (let (cnames rnames
)
1312 (when (listp (cdr var
))
1313 (when (and (not (equal colnames
"no"))
1314 (or colnames
(and (equal (nth 1 (cdr var
)) 'hline
)
1315 (not (member 'hline
(cddr (cdr var
)))))))
1316 (let ((both (org-babel-get-colnames (cdr var
))))
1317 (setq cnames
(cons (cons (car var
) (cdr both
))
1319 (setq var
(cons (car var
) (car both
)))))
1320 (when (and rownames
(not (equal rownames
"no")))
1321 (let ((both (org-babel-get-rownames (cdr var
))))
1322 (setq rnames
(cons (cons (car var
) (cdr both
))
1324 (setq var
(cons (car var
) (car both
)))))
1325 (when (and hlines
(not (equal hlines
"yes")))
1326 (setq var
(cons (car var
) (org-babel-del-hlines (cdr var
))))))
1329 (reverse cnames
) (reverse rnames
))))
1331 (defun org-babel-reassemble-table (table colnames rownames
)
1332 "Add column and row names to a table.
1333 Given a TABLE and set of COLNAMES and ROWNAMES add the names
1334 to the table for reinsertion to org-mode."
1337 (if (and colnames
(listp (car table
)) (= (length (car table
))
1339 (org-babel-put-colnames table colnames
) table
))
1340 (if (and rownames
(= (length table
) (length rownames
)))
1341 (org-babel-put-rownames table rownames
) table
))
1344 (defun org-babel-where-is-src-block-head ()
1345 "Find where the current source block begins.
1346 Return the point at the beginning of the current source
1347 block. Specifically at the beginning of the #+BEGIN_SRC line.
1348 If the point is not on a source block then return nil."
1349 (let ((initial (point)) top bottom
)
1351 (save-excursion ;; on a source name line or a #+header line
1352 (beginning-of-line 1)
1353 (and (or (looking-at org-babel-src-name-regexp
)
1354 (looking-at org-babel-multi-line-header-regexp
))
1356 (while (and (forward-line 1)
1357 (looking-at org-babel-multi-line-header-regexp
)))
1358 (looking-at org-babel-src-block-regexp
))
1360 (save-excursion ;; on a #+begin_src line
1361 (beginning-of-line 1)
1362 (and (looking-at org-babel-src-block-regexp
)
1364 (save-excursion ;; inside a src block
1366 (re-search-backward "^[ \t]*#\\+begin_src" nil t
) (setq top
(point))
1367 (re-search-forward "^[ \t]*#\\+end_src" nil t
) (setq bottom
(point))
1368 (< top initial
) (< initial bottom
)
1369 (progn (goto-char top
) (beginning-of-line 1)
1370 (looking-at org-babel-src-block-regexp
))
1374 (defun org-babel-goto-src-block-head ()
1375 "Go to the beginning of the current code block."
1378 (if head
(goto-char head
) (error "not currently in a code block")))
1379 (org-babel-where-is-src-block-head)))
1382 (defun org-babel-goto-named-src-block (name)
1383 "Go to a named source-code block."
1385 (let ((completion-ignore-case t
))
1386 (list (org-icompleting-read "source-block name: "
1387 (org-babel-src-block-names) nil t
))))
1388 (let ((point (org-babel-find-named-block name
)))
1390 ;; taken from `org-open-at-point'
1391 (progn (goto-char point
) (org-show-context))
1392 (message "source-code block '%s' not found in this buffer" name
))))
1394 (defun org-babel-find-named-block (name)
1395 "Find a named source-code block.
1396 Return the location of the source block identified by source
1397 NAME, or nil if no such block exists. Set match data according to
1398 org-babel-named-src-block-regexp."
1400 (let ((case-fold-search t
)
1401 (regexp (org-babel-named-src-block-regexp-for-name name
)) msg
)
1402 (goto-char (point-min))
1403 (when (or (re-search-forward regexp nil t
)
1404 (re-search-backward regexp nil t
))
1405 (match-beginning 0)))))
1407 (defun org-babel-src-block-names (&optional file
)
1408 "Returns the names of source blocks in FILE or the current buffer."
1410 (when file
(find-file file
)) (goto-char (point-min))
1412 (while (re-search-forward org-babel-src-name-w-name-regexp nil t
)
1413 (setq names
(cons (match-string 3) names
)))
1417 (defun org-babel-goto-named-result (name)
1418 "Go to a named result."
1420 (let ((completion-ignore-case t
))
1421 (list (org-icompleting-read "source-block name: "
1422 (org-babel-result-names) nil t
))))
1423 (let ((point (org-babel-find-named-result name
)))
1425 ;; taken from `org-open-at-point'
1426 (progn (goto-char point
) (org-show-context))
1427 (message "result '%s' not found in this buffer" name
))))
1429 (defun org-babel-find-named-result (name &optional point
)
1430 "Find a named result.
1431 Return the location of the result named NAME in the current
1432 buffer or nil if no such result exists."
1434 (goto-char (or point
(point-min)))
1435 (catch 'is-a-code-block
1436 (when (re-search-forward
1437 (concat org-babel-result-regexp
1438 "[ \t]" (regexp-quote name
) "[ \t\n\f\v\r]") nil t
)
1439 (when (and (string= "name" (downcase (match-string 1)))
1440 (or (looking-at org-babel-src-block-regexp
)
1441 (looking-at org-babel-multi-line-header-regexp
)))
1442 (throw 'is-a-code-block
(org-babel-find-named-result name
(point))))
1443 (beginning-of-line 0) (point)))))
1445 (defun org-babel-result-names (&optional file
)
1446 "Returns the names of results in FILE or the current buffer."
1448 (when file
(find-file file
)) (goto-char (point-min))
1450 (while (re-search-forward org-babel-result-w-name-regexp nil t
)
1451 (setq names
(cons (match-string 4) names
)))
1455 (defun org-babel-next-src-block (&optional arg
)
1456 "Jump to the next source block.
1457 With optional prefix argument ARG, jump forward ARG many source blocks."
1459 (when (looking-at org-babel-src-block-regexp
) (forward-char 1))
1461 (re-search-forward org-babel-src-block-regexp nil nil
(or arg
1))
1462 (error (error "No further code blocks")))
1463 (goto-char (match-beginning 0)) (org-show-context))
1466 (defun org-babel-previous-src-block (&optional arg
)
1467 "Jump to the previous source block.
1468 With optional prefix argument ARG, jump backward ARG many source blocks."
1471 (re-search-backward org-babel-src-block-regexp nil nil
(or arg
1))
1472 (error (error "No previous code blocks")))
1473 (goto-char (match-beginning 0)) (org-show-context))
1475 (defvar org-babel-load-languages
)
1478 (defun org-babel-mark-block ()
1479 "Mark current src block"
1485 (looking-at org-babel-src-block-regexp
))
1486 (push-mark (match-end 5) nil t
)
1487 (goto-char (match-beginning 5))))
1488 (org-babel-where-is-src-block-head)))
1490 (defun org-babel-demarcate-block (&optional arg
)
1491 "Wrap or split the code in the region or on the point.
1492 When called from inside of a code block the current block is
1493 split. When called from outside of a code block a new code block
1494 is created. In both cases if the region is demarcated and if the
1495 region is not active then the point is demarcated."
1497 (let ((info (org-babel-get-src-block-info 'light
))
1498 (headers (progn (org-babel-where-is-src-block-head)
1500 (stars (concat (make-string (or (org-current-level) 1) ?
*) " ")))
1506 (let ((lang (nth 0 info
))
1507 (indent (make-string (nth 5 info
) ?
)))
1508 (when (string-match "^[[:space:]]*$"
1509 (buffer-substring (point-at-bol)
1511 (delete-region (point-at-bol) (point-at-eol)))
1513 (if (looking-at "^") "" "\n")
1514 indent
"#+end_src\n"
1515 (if arg stars indent
) "\n"
1516 indent
"#+begin_src " lang
1517 (if (> (length headers
) 1)
1518 (concat " " headers
) headers
)
1519 (if (looking-at "[\n\r]")
1521 (concat "\n" (make-string (current-column) ?
)))))))
1522 (move-end-of-line 2))
1523 (sort (if (region-active-p) (list (mark) (point)) (list (point))) #'>))
1524 (let ((start (point))
1525 (lang (org-icompleting-read "Lang: "
1526 (mapcar (lambda (el) (symbol-name (car el
)))
1527 org-babel-load-languages
)))
1528 (body (delete-and-extract-region
1529 (if (region-active-p) (mark) (point)) (point))))
1530 (insert (concat (if (looking-at "^") "" "\n")
1531 (if arg
(concat stars
"\n") "")
1532 "#+begin_src " lang
"\n"
1534 (if (or (= (length body
) 0)
1535 (string-match "[\r\n]$" body
)) "" "\n")
1537 (goto-char start
) (move-end-of-line 1)))))
1539 (defvar org-babel-lob-one-liner-regexp
)
1540 (defun org-babel-where-is-src-block-result (&optional insert info hash indent
)
1541 "Find where the current source block results begin.
1542 Return the point at the beginning of the result of the current
1543 source block. Specifically at the beginning of the results line.
1544 If no result exists for this block then create a results line
1545 following the source block."
1547 (let* ((on-lob-line (save-excursion
1548 (beginning-of-line 1)
1549 (looking-at org-babel-lob-one-liner-regexp
)))
1550 (inlinep (when (org-babel-get-inline-src-block-matches)
1552 (name (if on-lob-line
1553 (nth 0 (org-babel-lob-get-info))
1554 (nth 4 (or info
(org-babel-get-src-block-info 'light
)))))
1555 (head (unless on-lob-line
(org-babel-where-is-src-block-head)))
1557 (when head
(goto-char head
))
1559 found
;; was there a result (before we potentially insert one)
1564 ;; - return t if it is found, else return nil
1565 ;; - if it does not need to be rebuilt, then don't set end
1566 ;; - if it does need to be rebuilt then do set end
1567 name
(setq beg
(org-babel-find-named-result name
))
1569 (when (and hash
(not (string= hash
(match-string 3))))
1570 (goto-char beg
) (setq end beg
) ;; beginning of result
1572 (delete-region end
(org-babel-result-end)) nil
)))
1575 ;; - return t if it is found, else return nil
1576 ;; - if it is found, and the hash doesn't match, delete and set end
1577 (or on-lob-line
(re-search-forward "^[ \t]*#\\+end_src" nil t
))
1578 (progn (end-of-line 1)
1579 (if (eobp) (insert "\n") (forward-char 1))
1582 (progn ;; unnamed results line already exists
1583 (re-search-forward "[^ \f\t\n\r\v]" nil t
)
1584 (beginning-of-line 1)
1586 (concat org-babel-result-regexp
"\n")))
1588 ;; must remove and rebuild if hash!=old-hash
1589 (if (and hash
(not (string= hash
(match-string 3))))
1593 end
(org-babel-result-end)))
1594 (setq end nil
)))))))))
1595 (if (and insert end
)
1599 (if (looking-at "[\n\r]") (forward-char 1) (insert "\n")))
1604 (org-number-sequence 1 indent
) "")
1607 (when hash
(concat "["hash
"]"))
1609 (when name
(concat " " name
)) "\n"))
1610 (unless beg
(insert "\n") (backward-char))
1611 (beginning-of-line 0)
1612 (if hash
(org-babel-hide-hash))
1616 (defvar org-block-regexp
)
1617 (defun org-babel-read-result ()
1618 "Read the result at `point' into emacs-lisp."
1619 (let ((case-fold-search t
) result-string
)
1621 ((org-at-table-p) (org-babel-read-table))
1622 ((org-at-item-p) (org-babel-read-list))
1623 ((looking-at org-bracket-link-regexp
) (org-babel-read-link))
1624 ((looking-at org-block-regexp
) (org-babel-trim (match-string 4)))
1625 ((looking-at "^[ \t]*: ")
1628 (mapconcat (lambda (line)
1629 (if (and (> (length line
) 1)
1630 (string-match "^[ \t]*: \\(.+\\)" line
))
1631 (match-string 1 line
)
1635 (point) (org-babel-result-end)) "[\r\n]+")
1637 (or (org-babel-number-p result-string
) result-string
))
1638 ((looking-at org-babel-result-regexp
)
1639 (save-excursion (forward-line 1) (org-babel-read-result))))))
1641 (defun org-babel-read-table ()
1642 "Read the table at `point' into emacs-lisp."
1643 (mapcar (lambda (row)
1644 (if (and (symbolp row
) (equal row
'hline
)) row
1645 (mapcar (lambda (el) (org-babel-read el
'inhibit-lisp-eval
)) row
)))
1646 (org-table-to-lisp)))
1648 (defun org-babel-read-list ()
1649 "Read the list at `point' into emacs-lisp."
1650 (mapcar (lambda (el) (org-babel-read el
'inhibit-lisp-eval
))
1651 (mapcar #'cadr
(cdr (org-list-parse-list)))))
1653 (defvar org-link-types-re
)
1654 (defun org-babel-read-link ()
1655 "Read the link at `point' into emacs-lisp.
1656 If the path of the link is a file path it is expanded using
1657 `expand-file-name'."
1658 (let* ((case-fold-search t
)
1659 (raw (and (looking-at org-bracket-link-regexp
)
1660 (org-babel-clean-text-properties (match-string 1))))
1661 (type (and (string-match org-link-types-re raw
)
1662 (match-string 1 raw
))))
1664 ((not type
) (expand-file-name raw
))
1665 ((string= type
"file")
1666 (and (string-match "file\\(.*\\):\\(.+\\)" raw
)
1667 (expand-file-name (match-string 2 raw
))))
1670 (defun org-babel-format-result (result &optional sep
)
1671 "Format RESULT for writing to file."
1672 (flet ((echo-res (result)
1673 (if (stringp result
) result
(format "%S" result
))))
1682 (echo-res result
))))
1684 (defun org-babel-insert-result
1685 (result &optional result-params info hash indent lang
)
1686 "Insert RESULT into the current buffer.
1687 By default RESULT is inserted after the end of the
1688 current source block. With optional argument RESULT-PARAMS
1689 controls insertion of results in the org-mode file.
1690 RESULT-PARAMS can take the following values...
1692 replace - (default option) insert results after the source block
1693 replacing any previously inserted results
1695 silent -- no results are inserted
1697 file ---- the results are interpreted as a file path, and are
1698 inserted into the buffer using the Org-mode file syntax
1700 list ---- the results are interpreted as an Org-mode list.
1702 raw ----- results are added directly to the Org-mode file. This
1703 is a good option if you code block will output org-mode
1706 wrap ---- results are added directly to the Org-mode file as with
1707 \"raw\", but are wrapped in a RESULTS drawer, allowing
1708 them to later be replaced or removed automatically.
1710 org ----- similar in effect to raw, only the results are wrapped
1711 in an org code block. Similar to the raw option, on
1712 export the results will be interpreted as org-formatted
1713 text, however by wrapping the results in an org code
1714 block they can be replaced upon re-execution of the
1717 html ---- results are added inside of a #+BEGIN_HTML block. This
1718 is a good option if you code block will output html
1721 latex --- results are added inside of a #+BEGIN_LATEX block.
1722 This is a good option if you code block will output
1723 latex formatted text.
1725 code ---- the results are extracted in the syntax of the source
1726 code of the language being evaluated and are added
1727 inside of a #+BEGIN_SRC block with the source-code
1728 language set appropriately. Note this relies on the
1729 optional LANG argument."
1730 (if (stringp result
)
1732 (setq result
(org-babel-clean-text-properties result
))
1733 (when (member "file" result-params
)
1734 (setq result
(org-babel-result-to-file result
))))
1735 (unless (listp result
) (setq result
(format "%S" result
))))
1736 (if (and result-params
(member "silent" result-params
))
1738 (message (replace-regexp-in-string "%" "%%" (format "%S" result
)))
1743 (when (or (org-babel-get-inline-src-block-matches)
1744 (org-babel-get-lob-one-liner-matches))
1745 (goto-char (match-end 0))
1746 (insert (if (listp result
) "\n" " "))
1748 (existing-result (unless inlinep
1749 (org-babel-where-is-src-block-result
1750 t info hash indent
)))
1752 (cdr (assoc :results_switches
(nth 2 info
))))
1754 (when (and (stringp result
) ; ensure results end in a newline
1756 (> (length result
) 0)
1757 (not (or (string-equal (substring result -
1) "\n")
1758 (string-equal (substring result -
1) "\r"))))
1759 (setq result
(concat result
"\n")))
1760 (if (not existing-result
)
1761 (setq beg
(or inlinep
(point)))
1762 (goto-char existing-result
)
1764 (re-search-forward "#" nil t
)
1765 (setq indent
(- (current-column) 1)))
1769 ((member "replace" result-params
)
1770 (delete-region (point) (org-babel-result-end)))
1771 ((member "append" result-params
)
1772 (goto-char (org-babel-result-end)) (setq beg
(point-marker)))
1773 ((member "prepend" result-params
)))) ; already there
1774 (setq results-switches
1775 (if results-switches
(concat " " results-switches
) ""))
1776 (flet ((wrap (start finish
)
1777 (goto-char beg
) (insert (concat start
"\n"))
1778 (goto-char end
) (insert (concat finish
"\n"))
1779 (setq end
(point-marker)))
1780 (proper-list-p (it) (and (listp it
) (null (cdr (last it
))))))
1781 ;; insert results based on type
1783 ;; do nothing for an empty result
1785 ;; insert a list if preferred
1786 ((member "list" result-params
)
1789 (org-list-to-generic
1792 (lambda (el) (list nil
(if (stringp el
) el
(format "%S" el
))))
1793 (if (listp result
) result
(list result
))))
1794 '(:splicep nil
:istart
"- " :iend
"\n")))
1796 ;; assume the result is a table if it's not a string
1797 ((proper-list-p result
)
1799 (insert (concat (orgtbl-to-orgtbl
1800 (if (or (eq 'hline
(car result
))
1801 (and (listp (car result
))
1802 (listp (cdr (car result
)))))
1803 result
(list result
))
1804 '(:fmt
(lambda (cell) (format "%s" cell
)))) "\n"))
1805 (goto-char beg
) (when (org-at-table-p) (org-table-align)))
1806 ((and (listp result
) (not (proper-list-p result
)))
1807 (insert (format "%s\n" result
)))
1808 ((member "file" result-params
)
1809 (when inlinep
(goto-char inlinep
))
1811 (t (goto-char beg
) (insert result
)))
1812 (when (proper-list-p result
) (goto-char (org-table-end)))
1813 (setq end
(point-marker))
1814 ;; possibly wrap result
1816 ((member "html" result-params
)
1817 (wrap "#+BEGIN_HTML" "#+END_HTML"))
1818 ((member "latex" result-params
)
1819 (wrap "#+BEGIN_LaTeX" "#+END_LaTeX"))
1820 ((member "code" result-params
)
1821 (wrap (format "#+BEGIN_SRC %s%s" (or lang
"none") results-switches
)
1823 ((member "org" result-params
)
1824 (wrap "#+BEGIN_ORG" "#+END_ORG"))
1825 ((member "raw" result-params
)
1826 (goto-char beg
) (if (org-at-table-p) (org-cycle)))
1827 ((member "wrap" result-params
)
1828 (wrap ":RESULTS:" ":END:"))
1829 ((and (not (proper-list-p result
))
1830 (not (member "file" result-params
)))
1831 (org-babel-examplize-region beg end results-switches
)
1832 (setq end
(point)))))
1833 ;; possibly indent the results to match the #+results line
1834 (when (and (not inlinep
) (numberp indent
) indent
(> indent
0)
1835 ;; in this case `table-align' does the work for us
1836 (not (and (listp result
)
1837 (member "append" result-params
))))
1838 (indent-rigidly beg end indent
))))
1840 (if (member "value" result-params
)
1841 (message "Code block returned no value.")
1842 (message "Code block produced no output."))
1843 (message "Code block evaluation complete."))))
1845 (defun org-babel-remove-result (&optional info
)
1846 "Remove the result of the current source block."
1848 (let ((location (org-babel-where-is-src-block-result nil info
)) start
)
1850 (setq start
(- location
1))
1852 (goto-char location
) (forward-line 1)
1853 (delete-region start
(org-babel-result-end))))))
1855 (defun org-babel-result-end ()
1856 "Return the point at the end of the current set of results"
1859 ((org-at-table-p) (progn (goto-char (org-table-end)) (point)))
1860 ((org-at-item-p) (let* ((struct (org-list-struct))
1861 (prvs (org-list-prevs-alist struct
)))
1862 (org-list-get-list-end (point-at-bol) struct prvs
)))
1863 ((looking-at "^\\([ \t]*\\):RESULTS:")
1864 (re-search-forward (concat "^" (match-string 1) ":END:")))
1866 (let ((case-fold-search t
)
1867 (blocks-re (regexp-opt
1868 (list "latex" "html" "example" "src" "result" "org"))))
1869 (if (looking-at (concat "[ \t]*#\\+begin_" blocks-re
))
1870 (progn (re-search-forward (concat "[ \t]*#\\+end_" blocks-re
) nil t
)
1872 (while (looking-at "[ \t]*\\(: \\|\\[\\[\\)")
1876 (defun org-babel-result-to-file (result)
1877 "Convert RESULT into an `org-mode' link.
1878 If the `default-directory' is different from the containing
1879 file's directory then expand relative links."
1880 (flet ((cond-exp (file)
1881 (if (and default-directory
1883 (not (string= (expand-file-name default-directory
)
1885 (file-name-directory buffer-file-name
)))))
1886 (expand-file-name file default-directory
)
1888 (if (stringp result
)
1889 (format "[[file:%s]]" (cond-exp result
))
1890 (when (and (listp result
) (= 2 (length result
))
1891 (stringp (car result
)) (stringp (cadr result
)))
1892 (format "[[file:%s][%s]]" (car result
) (cadr result
))))))
1894 (defun org-babel-examplize-region (beg end
&optional results-switches
)
1895 "Comment out region using the inline '==' or ': ' org example quote."
1897 (flet ((chars-between (b e
) (string-match "[\\S]" (buffer-substring b e
))))
1898 (if (or (chars-between (save-excursion (goto-char beg
) (point-at-bol)) beg
)
1899 (chars-between end
(save-excursion (goto-char end
) (point-at-eol))))
1902 (insert (format "=%s=" (prog1 (buffer-substring beg end
)
1903 (delete-region beg end
)))))
1904 (let ((size (count-lines beg end
)))
1906 (cond ((= size
0)) ; do nothing for an empty result
1907 ((< size org-babel-min-lines-for-block-output
)
1910 (beginning-of-line 1) (insert ": ") (forward-line 1)))
1913 (insert (if results-switches
1914 (format "#+begin_example%s\n" results-switches
)
1915 "#+begin_example\n"))
1916 (if (markerp end
) (goto-char end
) (forward-char (- end beg
)))
1917 (insert "#+end_example\n"))))))))
1919 (defun org-babel-update-block-body (new-body)
1920 "Update the body of the current code block to NEW-BODY."
1921 (if (not (org-babel-where-is-src-block-head))
1922 (error "not in source block")
1924 (replace-match (concat (org-babel-trim new-body
) "\n") nil t nil
5))
1925 (indent-rigidly (match-beginning 5) (match-end 5) 2)))
1927 (defun org-babel-merge-params (&rest plists
)
1928 "Combine all parameter association lists in PLISTS.
1929 Later elements of PLISTS override the values of previous elements.
1930 This takes into account some special considerations for certain
1931 parameters when merging lists."
1932 (let ((results-exclusive-groups
1933 (mapcar (lambda (group) (mapcar #'symbol-name group
))
1934 (cdr (assoc 'results org-babel-common-header-args-w-values
))))
1935 (exports-exclusive-groups
1936 (mapcar (lambda (group) (mapcar #'symbol-name group
))
1937 (cdr (assoc 'exports org-babel-common-header-args-w-values
))))
1939 params results exports tangle noweb cache vars shebang comments padline
)
1940 (flet ((e-merge (exclusive-groups &rest result-params
)
1941 ;; maintain exclusivity of mutually exclusive parameters
1943 (mapc (lambda (new-params)
1944 (mapc (lambda (new-param)
1945 (mapc (lambda (exclusive-group)
1946 (when (member new-param exclusive-group
)
1947 (mapcar (lambda (excluded-param)
1954 (setq output
(org-uniquify
1955 (cons new-param output
))))
1965 (let ((name (if (listp (cdr pair
))
1967 (and (string-match "^\\([^= \f\t\n\r\v]+\\)[ \t]*="
1969 (intern (match-string 1 (cdr pair
)))))))
1973 (if (member name
(mapcar #'car vars
))
1977 (unless (equal (car p
) name
) p
))
1980 (list (cons name pair
))))
1981 ;; if no name is given and we already have named variables
1982 ;; then assign to named variables in order
1983 (if (and vars
(nth variable-index vars
))
1984 (prog1 (setf (cddr (nth variable-index vars
))
1985 (concat (symbol-name
1986 (car (nth variable-index vars
)))
1988 (incf variable-index
))
1989 (error "variable \"%s\" must be assigned a default value"
1992 (setq results
(e-merge results-exclusive-groups
1995 (let ((r (cdr pair
)))
1996 (if (stringp r
) r
(eval r
)))))))
1999 (setq results
(e-merge results-exclusive-groups
2001 (unless (or (member "both" exports
)
2002 (member "none" exports
)
2003 (member "code" exports
))
2004 (setq exports
(e-merge exports-exclusive-groups
2005 exports
'("results"))))
2006 (setq params
(cons pair
(assq-delete-all (car pair
) params
)))))
2008 (setq exports
(e-merge exports-exclusive-groups
2009 exports
(split-string (cdr pair
)))))
2010 (:tangle
;; take the latest -- always overwrite
2011 (setq tangle
(or (list (cdr pair
)) tangle
)))
2013 (setq noweb
(e-merge '(("yes" "no" "tangle")) noweb
2014 (split-string (or (cdr pair
) "")))))
2016 (setq cache
(e-merge '(("yes" "no")) cache
2017 (split-string (or (cdr pair
) "")))))
2019 (setq padline
(e-merge '(("yes" "no")) padline
2020 (split-string (or (cdr pair
) "")))))
2021 (:shebang
;; take the latest -- always overwrite
2022 (setq shebang
(or (list (cdr pair
)) shebang
)))
2024 (setq comments
(e-merge '(("yes" "no")) comments
2025 (split-string (or (cdr pair
) "")))))
2026 (t ;; replace: this covers e.g. :session
2027 (setq params
(cons pair
(assq-delete-all (car pair
) params
))))))
2030 (setq vars
(reverse vars
))
2031 (while vars
(setq params
(cons (cons :var
(cddr (pop vars
))) params
)))
2034 (let ((key (intern (concat ":" (symbol-name hd
))))
2036 (setf params
(cons (cons key
(mapconcat 'identity val
" ")) params
))))
2037 '(results exports tangle noweb padline cache shebang comments
))
2040 (defun org-babel-expand-noweb-references (&optional info parent-buffer
)
2041 "Expand Noweb references in the body of the current source code block.
2043 For example the following reference would be replaced with the
2044 body of the source-code block named 'example-block'.
2048 Note that any text preceding the <<foo>> construct on a line will
2049 be interposed between the lines of the replacement text. So for
2050 example if <<foo>> is placed behind a comment, then the entire
2051 replacement text will also be commented.
2053 This function must be called from inside of the buffer containing
2054 the source-code block which holds BODY.
2056 In addition the following syntax can be used to insert the
2057 results of evaluating the source-code block named 'example-block'.
2061 Any optional arguments can be passed to example-block by placing
2062 the arguments inside the parenthesis following the convention
2063 defined by `org-babel-lob'. For example
2065 <<example-block(a=9)>>
2067 would set the value of argument \"a\" equal to \"9\". Note that
2068 these arguments are not evaluated in the current source-code
2069 block but are passed literally to the \"example-block\"."
2070 (let* ((parent-buffer (or parent-buffer
(current-buffer)))
2071 (info (or info
(org-babel-get-src-block-info)))
2074 (comment (string= "noweb" (cdr (assoc :comments
(nth 2 info
)))))
2075 (rx-prefix (regexp-opt (list org-babel-src-name-regexp
":noweb-ref")))
2076 (new-body "") index source-name evaluate prefix blocks-in-buffer
)
2077 (flet ((nb-add (text) (setq new-body
(concat new-body text
)))
2080 (funcall (intern (concat lang
"-mode")))
2081 (comment-region (point) (progn (insert text
) (point)))
2082 (org-babel-trim (buffer-string)))))
2084 (insert body
) (goto-char (point-min))
2085 (setq index
(point))
2086 (while (and (re-search-forward "<<\\(.+?\\)>>" nil t
))
2087 (save-match-data (setf source-name
(match-string 1)))
2088 (save-match-data (setq evaluate
(string-match "\(.*\)" source-name
)))
2091 (buffer-substring (match-beginning 0)
2093 (beginning-of-line 1) (point)))))
2094 ;; add interval to new-body (removing noweb reference)
2095 (goto-char (match-beginning 0))
2096 (nb-add (buffer-substring index
(point)))
2097 (goto-char (match-end 0))
2098 (setq index
(point))
2100 (with-current-buffer parent-buffer
2101 (mapconcat ;; interpose PREFIX between every line
2105 (let ((raw (org-babel-ref-resolve source-name
)))
2106 (if (stringp raw
) raw
(format "%S" raw
)))
2108 ;; retrieve from the library of babel
2109 (nth 2 (assoc (intern source-name
)
2110 org-babel-library-of-babel
))
2111 ;; return the contents of headlines literally
2113 (when (org-babel-ref-goto-headline-id source-name
)
2114 (org-babel-ref-headline-body)))
2115 ;; find the expansion of reference in this buffer
2116 (let ((rx (concat rx-prefix
"[ \t]+" source-name
))
2119 (goto-char (point-min))
2120 (while (re-search-forward rx nil t
)
2121 (let* ((i (org-babel-get-src-block-info 'light
))
2122 (body (org-babel-expand-noweb-references i
)))
2125 (concat (c-wrap (car cs
)) "\n"
2126 body
"\n" (c-wrap (cadr cs
))))
2127 (org-babel-tangle-comment-links i
))
2128 (setq expansion
(concat expansion body
))))))
2130 ;; possibly raise an error if named block doesn't exist
2131 (if (member lang org-babel-noweb-error-langs
)
2133 "<<" source-name
">> "
2134 "could not be resolved (see "
2135 "`org-babel-noweb-error-langs')"))
2137 "[\n\r]") (concat "\n" prefix
)))))
2138 (nb-add (buffer-substring index
(point-max)))))
2141 (defun org-babel-clean-text-properties (text)
2142 "Strip all properties from text return."
2144 (set-text-properties 0 (length text
) nil text
) text
))
2146 (defun org-babel-strip-protective-commas (body)
2147 "Strip protective commas from bodies of source blocks."
2149 (replace-regexp-in-string "^,#" "#" body
)))
2151 (defun org-babel-script-escape (str &optional force
)
2152 "Safely convert tables into elisp lists."
2153 (let (in-single in-double out
)
2154 ((lambda (escaped) (condition-case nil
(org-babel-read escaped
) (error escaped
)))
2158 (or (and (string-equal "[" (substring str
0 1))
2159 (string-equal "]" (substring str -
1)))
2160 (and (string-equal "{" (substring str
0 1))
2161 (string-equal "}" (substring str -
1)))
2162 (and (string-equal "(" (substring str
0 1))
2163 (string-equal ")" (substring str -
1))))))
2173 (91 (if (or in-double in-single
) ; [
2176 (93 (if (or in-double in-single
) ; ]
2179 (123 (if (or in-double in-single
) ; {
2182 (125 (if (or in-double in-single
) ; }
2185 (44 (if (or in-double in-single
) ; ,
2186 (cons 44 out
) (cons 32 out
)))
2187 (39 (if in-double
; '
2189 (setq in-single
(not in-single
)) (cons 34 out
)))
2190 (34 (if in-single
; "
2191 (append (list 34 32) out
)
2192 (setq in-double
(not in-double
)) (cons 34 out
)))
2193 (t (cons ch out
)))))
2194 (string-to-list str
))
2195 (apply #'string
(reverse out
)))))
2198 (defun org-babel-read (cell &optional inhibit-lisp-eval
)
2199 "Convert the string value of CELL to a number if appropriate.
2200 Otherwise if cell looks like lisp (meaning it starts with a
2201 \"(\", \"'\", \"`\" or a \"[\") then read it as lisp, otherwise
2202 return it unmodified as a string. Optional argument NO-LISP-EVAL
2203 inhibits lisp evaluation for situations in which is it not
2205 (if (and (stringp cell
) (not (equal cell
"")))
2206 (or (org-babel-number-p cell
)
2207 (if (and (not inhibit-lisp-eval
)
2208 (member (substring cell
0 1) '("(" "'" "`" "[")))
2210 (if (string= (substring cell
0 1) "\"")
2212 (progn (set-text-properties 0 (length cell
) nil cell
) cell
))))
2215 (defun org-babel-number-p (string)
2216 "If STRING represents a number return its value."
2217 (if (and (string-match "^-?[0-9]*\\.?[0-9]*$" string
)
2218 (= (length (substring string
(match-beginning 0)
2221 (string-to-number string
)))
2223 (defun org-babel-import-elisp-from-file (file-name &optional separator
)
2224 "Read the results located at FILE-NAME into an elisp table.
2225 If the table is trivial, then return it as a scalar."
2227 (save-window-excursion
2231 (org-table-import file-name separator
)
2232 (delete-file file-name
)
2233 (setq result
(mapcar (lambda (row)
2234 (mapcar #'org-babel-string-read row
))
2235 (org-table-to-lisp))))
2237 (if (null (cdr result
)) ;; if result is trivial vector, then scalarize it
2238 (if (consp (car result
))
2239 (if (null (cdr (car result
)))
2245 (defun org-babel-string-read (cell)
2246 "Strip nested \"s from around strings."
2247 (org-babel-read (or (and (stringp cell
)
2248 (string-match "\\\"\\(.+\\)\\\"" cell
)
2249 (match-string 1 cell
))
2252 (defun org-babel-reverse-string (string)
2253 "Return the reverse of STRING."
2254 (apply 'string
(reverse (string-to-list string
))))
2256 (defun org-babel-chomp (string &optional regexp
)
2257 "Strip trailing spaces and carriage returns from STRING.
2258 Default regexp used is \"[ \f\t\n\r\v]\" but can be
2259 overwritten by specifying a regexp as a second argument."
2260 (let ((regexp (or regexp
"[ \f\t\n\r\v]")))
2261 (while (and (> (length string
) 0)
2262 (string-match regexp
(substring string -
1)))
2263 (setq string
(substring string
0 -
1)))
2266 (defun org-babel-trim (string &optional regexp
)
2267 "Strip leading and trailing spaces and carriage returns from STRING.
2268 Like `org-babel-chomp' only it runs on both the front and back
2270 (org-babel-chomp (org-babel-reverse-string
2271 (org-babel-chomp (org-babel-reverse-string string
) regexp
))
2274 (defvar org-babel-org-babel-call-process-region-original nil
)
2275 (defun org-babel-tramp-handle-call-process-region
2276 (start end program
&optional delete buffer display
&rest args
)
2277 "Use tramp to handle call-process-region.
2278 Fixes a bug in `tramp-handle-call-process-region'."
2279 (if (and (featurep 'tramp
) (file-remote-p default-directory
))
2280 (let ((tmpfile (tramp-compat-make-temp-file "")))
2281 (write-region start end tmpfile
)
2282 (when delete
(delete-region start end
))
2284 ;; (apply 'call-process program tmpfile buffer display args)
2286 (apply 'process-file program tmpfile buffer display args
)
2287 (delete-file tmpfile
)))
2288 ;; org-babel-call-process-region-original is the original emacs
2289 ;; definition. It is in scope from the let binding in
2290 ;; org-babel-execute-src-block
2291 (apply org-babel-call-process-region-original
2292 start end program delete buffer display args
)))
2294 (defun org-babel-local-file-name (file)
2295 "Return the local name component of FILE."
2296 (if (file-remote-p file
)
2298 (with-parsed-tramp-file-name file nil
2302 (defun org-babel-process-file-name (name &optional no-quote-p
)
2303 "Prepare NAME to be used in an external process.
2304 If NAME specifies a remote location, the remote portion of the
2305 name is removed, since in that case the process will be executing
2306 remotely. The file name is then processed by
2307 `expand-file-name'. Unless second argument NO-QUOTE-P is non-nil,
2308 the file name is additionally processed by
2309 `shell-quote-argument'"
2310 ((lambda (f) (if no-quote-p f
(shell-quote-argument f
)))
2311 (expand-file-name (org-babel-local-file-name name
))))
2313 (defvar org-babel-temporary-directory
)
2314 (unless (or noninteractive
(boundp 'org-babel-temporary-directory
))
2315 (defvar org-babel-temporary-directory
2316 (or (and (boundp 'org-babel-temporary-directory
)
2317 (file-exists-p org-babel-temporary-directory
)
2318 org-babel-temporary-directory
)
2319 (make-temp-file "babel-" t
))
2320 "Directory to hold temporary files created to execute code blocks.
2321 Used by `org-babel-temp-file'. This directory will be removed on
2324 (defun org-babel-temp-file (prefix &optional suffix
)
2325 "Create a temporary file in the `org-babel-temporary-directory'.
2326 Passes PREFIX and SUFFIX directly to `make-temp-file' with the
2327 value of `temporary-file-directory' temporarily set to the value
2328 of `org-babel-temporary-directory'."
2329 (if (file-remote-p default-directory
)
2331 (concat (file-remote-p default-directory
)
2333 prefix temporary-file-directory
)
2335 (let ((temporary-file-directory
2336 (or (and (boundp 'org-babel-temporary-directory
)
2337 (file-exists-p org-babel-temporary-directory
)
2338 org-babel-temporary-directory
)
2339 temporary-file-directory
)))
2340 (make-temp-file prefix nil suffix
))))
2342 (defun org-babel-remove-temporary-directory ()
2343 "Remove `org-babel-temporary-directory' on Emacs shutdown."
2344 (when (and (boundp 'org-babel-temporary-directory
)
2345 (file-exists-p org-babel-temporary-directory
))
2346 ;; taken from `delete-directory' in files.el
2349 (mapc (lambda (file)
2350 ;; This test is equivalent to
2351 ;; (and (file-directory-p fn) (not (file-symlink-p fn)))
2352 ;; but more efficient
2353 (if (eq t
(car (file-attributes file
)))
2354 (delete-directory file
)
2355 (delete-file file
)))
2356 ;; We do not want to delete "." and "..".
2357 (directory-files org-babel-temporary-directory
'full
2358 "^\\([^.]\\|\\.\\([^.]\\|\\..\\)\\).*"))
2359 (delete-directory org-babel-temporary-directory
))
2361 (message "Failed to remove temporary Org-babel directory %s"
2362 (if (boundp 'org-babel-temporary-directory
)
2363 org-babel-temporary-directory
2364 "[directory not defined]"))))))
2366 (add-hook 'kill-emacs-hook
'org-babel-remove-temporary-directory
)
