lisp/ob-tangle.el

   1 ;;; ob-tangle.el --- extract source code from org-mode files
   2
   3 ;; Copyright (C) 2009-2013 Free Software Foundation, Inc.
   4
   5 ;; Author: Eric Schulte
   6 ;; Keywords: literate programming, reproducible research
   7 ;; Homepage: http://orgmode.org
   8
   9 ;; This file is part of GNU Emacs.
  10
  11 ;; GNU Emacs is free software: you can redistribute it and/or modify
  12 ;; it under the terms of the GNU General Public License as published by
  13 ;; the Free Software Foundation, either version 3 of the License, or
  14 ;; (at your option) any later version.
  15
  16 ;; GNU Emacs is distributed in the hope that it will be useful,
  17 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
  18 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  19 ;; GNU General Public License for more details.
  20
  21 ;; You should have received a copy of the GNU General Public License
  22 ;; along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>.
  23
  24 ;;; Commentary:
  25
  26 ;; Extract the code from source blocks out into raw source-code files.
  27
  28 ;;; Code:
  29 (require 'org-src)
  30 (eval-when-compile
  31   (require 'cl))
  32
  33 (declare-function org-link-escape "org" (text &optional table))
  34 (declare-function org-heading-components "org" ())
  35 (declare-function org-back-to-heading "org" (invisible-ok))
  36 (declare-function org-fill-template "org" (template alist))
  37 (declare-function org-babel-update-block-body "org" (new-body))
  38 (declare-function make-directory "files" (dir &optional parents))
  39
  40 (defcustom org-babel-tangle-lang-exts
  41   '(("emacs-lisp" . "el"))
  42   "Alist mapping languages to their file extensions.
  43 The key is the language name, the value is the string that should
  44 be inserted as the extension commonly used to identify files
  45 written in this language.  If no entry is found in this list,
  46 then the name of the language is used."
  47   :group 'org-babel-tangle
  48   :version "24.1"
  49   :type '(repeat
  50           (cons
  51            (string "Language name")
  52            (string "File Extension"))))
  53
  54 (defcustom org-babel-post-tangle-hook nil
  55   "Hook run in code files tangled by `org-babel-tangle'."
  56   :group 'org-babel
  57   :version "24.1"
  58   :type 'hook)
  59
  60 (defcustom org-babel-pre-tangle-hook '(save-buffer)
  61   "Hook run at the beginning of `org-babel-tangle'."
  62   :group 'org-babel
  63   :version "24.1"
  64   :type 'hook)
  65
  66 (defcustom org-babel-tangle-body-hook nil
  67   "Hook run over the contents of each code block body."
  68   :group 'org-babel
  69   :version "24.1"
  70   :type 'hook)
  71
  72 (defcustom org-babel-tangle-comment-format-beg "[[%link][%source-name]]"
  73   "Format of inserted comments in tangled code files.
  74 The following format strings can be used to insert special
  75 information into the output using `org-fill-template'.
  76 %start-line --- the line number at the start of the code block
  77 %file --------- the file from which the code block was tangled
  78 %link --------- Org-mode style link to the code block
  79 %source-name -- name of the code block
  80
  81 Whether or not comments are inserted during tangling is
  82 controlled by the :comments header argument."
  83   :group 'org-babel
  84   :version "24.1"
  85   :type 'string)
  86
  87 (defcustom org-babel-tangle-comment-format-end "%source-name ends here"
  88   "Format of inserted comments in tangled code files.
  89 The following format strings can be used to insert special
  90 information into the output using `org-fill-template'.
  91 %start-line --- the line number at the start of the code block
  92 %file --------- the file from which the code block was tangled
  93 %link --------- Org-mode style link to the code block
  94 %source-name -- name of the code block
  95
  96 Whether or not comments are inserted during tangling is
  97 controlled by the :comments header argument."
  98   :group 'org-babel
  99   :version "24.1"
 100   :type 'string)
 101
 102 (defcustom org-babel-process-comment-text #'org-babel-trim
 103   "Function called to process raw Org-mode text collected to be
 104 inserted as comments in tangled source-code files.  The function
 105 should take a single string argument and return a string
 106 result.  The default value is `org-babel-trim'."
 107   :group 'org-babel
 108   :version "24.1"
 109   :type 'function)
 110
 111 (defun org-babel-find-file-noselect-refresh (file)
 112   "Find file ensuring that the latest changes on disk are
 113 represented in the file."
 114   (find-file-noselect file)
 115   (with-current-buffer (get-file-buffer file)
 116     (revert-buffer t t t)))
 117
 118 (defmacro org-babel-with-temp-filebuffer (file &rest body)
 119   "Open FILE into a temporary buffer execute BODY there like
 120 `progn', then kill the FILE buffer returning the result of
 121 evaluating BODY."
 122   (declare (indent 1))
 123   (let ((temp-path (make-symbol "temp-path"))
 124         (temp-result (make-symbol "temp-result"))
 125         (temp-file (make-symbol "temp-file"))
 126         (visited-p (make-symbol "visited-p")))
 127     `(let* ((,temp-path ,file)
 128             (,visited-p (get-file-buffer ,temp-path))
 129             ,temp-result ,temp-file)
 130        (org-babel-find-file-noselect-refresh ,temp-path)
 131        (setf ,temp-file (get-file-buffer ,temp-path))
 132        (with-current-buffer ,temp-file
 133          (setf ,temp-result (progn ,@body)))
 134        (unless ,visited-p (kill-buffer ,temp-file))
 135        ,temp-result)))
 136 (def-edebug-spec org-babel-with-temp-filebuffer (form body))
 137
 138 ;;;###autoload
 139 (defun org-babel-tangle-file (file &optional target-file lang)
 140   "Extract the bodies of source code blocks in FILE.
 141 Source code blocks are extracted with `org-babel-tangle'.
 142 Optional argument TARGET-FILE can be used to specify a default
 143 export file for all source blocks.  Optional argument LANG can be
 144 used to limit the exported source code blocks by language."
 145   (interactive "fFile to tangle: \nP")
 146   (let ((visited-p (get-file-buffer (expand-file-name file)))
 147         to-be-removed)
 148     (save-window-excursion
 149       (find-file file)
 150       (setq to-be-removed (current-buffer))
 151       (org-babel-tangle nil target-file lang))
 152     (unless visited-p
 153       (kill-buffer to-be-removed))))
 154
 155 (defun org-babel-tangle-publish (_ filename pub-dir)
 156   "Tangle FILENAME and place the results in PUB-DIR."
 157   (mapc (lambda (el) (copy-file el pub-dir t)) (org-babel-tangle-file filename)))
 158
 159 ;;;###autoload
 160 (defun org-babel-tangle (&optional arg target-file lang)
 161   "Write code blocks to source-specific files.
 162 Extract the bodies of all source code blocks from the current
 163 file into their own source-specific files.
 164 With one universal prefix argument, only tangle the block at point.
 165 When two universal prefix arguments, only tangle blocks for the
 166 tangle file of the block at point.
 167 Optional argument TARGET-FILE can be used to specify a default
 168 export file for all source blocks.  Optional argument LANG can be
 169 used to limit the exported source code blocks by language."
 170   (interactive "P")
 171   (run-hooks 'org-babel-pre-tangle-hook)
 172   ;; Possibly Restrict the buffer to the current code block
 173   (save-restriction
 174     (when (equal arg '(4))
 175       (let ((head (org-babel-where-is-src-block-head)))
 176           (if head
 177               (goto-char head)
 178             (user-error "Point is not in a source code block"))))
 179     (save-excursion
 180       (let ((block-counter 0)
 181             (org-babel-default-header-args
 182              (if target-file
 183                  (org-babel-merge-params org-babel-default-header-args
 184                                          (list (cons :tangle target-file)))
 185                org-babel-default-header-args))
 186             (tangle-file
 187              (when (equal arg '(16))
 188                (or (cdr (assoc :tangle (nth 2 (org-babel-get-src-block-info))))
 189                    (user-error "Point is not in a source code block"))))
 190             path-collector)
 191         (mapc ;; map over all languages
 192          (lambda (by-lang)
 193            (let* ((lang (car by-lang))
 194                   (specs (cdr by-lang))
 195                   (ext (or (cdr (assoc lang org-babel-tangle-lang-exts)) lang))
 196                   (lang-f (intern
 197                            (concat
 198                             (or (and (cdr (assoc lang org-src-lang-modes))
 199                                      (symbol-name
 200                                       (cdr (assoc lang org-src-lang-modes))))
 201                                 lang)
 202                             "-mode")))
 203                   she-banged)
 204              (mapc
 205               (lambda (spec)
 206                 (let ((get-spec (lambda (name) (cdr (assoc name (nth 4 spec))))))
 207                   (let* ((tangle (funcall get-spec :tangle))
 208                          (she-bang ((lambda (sheb) (when (> (length sheb) 0) sheb))
 209                                     (funcall get-spec :shebang)))
 210                          (base-name (cond
 211                                      ((string= "yes" tangle)
 212                                       (file-name-sans-extension
 213                                        (buffer-file-name)))
 214                                      ((string= "no" tangle) nil)
 215                                      ((> (length tangle) 0) tangle)))
 216                          (file-name (when base-name
 217                                       ;; decide if we want to add ext to base-name
 218                                       (if (and ext (string= "yes" tangle))
 219                                           (concat base-name "." ext) base-name))))
 220                     (when file-name
 221                       ;; possibly create the parent directories for file
 222                       (when ((lambda (m) (and m (not (string= m "no"))))
 223                              (funcall get-spec :mkdirp))
 224                         (make-directory (file-name-directory file-name) 'parents))
 225                       ;; delete any old versions of file
 226                       (when (and (file-exists-p file-name)
 227                                  (not (member file-name path-collector)))
 228                         (delete-file file-name))
 229                       ;; drop source-block to file
 230                       (with-temp-buffer
 231                         (when (fboundp lang-f) (ignore-errors (funcall lang-f)))
 232                         (when (and she-bang (not (member file-name she-banged)))
 233                           (insert (concat she-bang "\n"))
 234                           (setq she-banged (cons file-name she-banged)))
 235                         (org-babel-spec-to-string spec)
 236                         ;; We avoid append-to-file as it does not work with tramp.
 237                         (let ((content (buffer-string)))
 238                           (with-temp-buffer
 239                             (if (file-exists-p file-name)
 240                                 (insert-file-contents file-name))
 241                             (goto-char (point-max))
 242                             (insert content)
 243                             (write-region nil nil file-name))))
 244                       ;; if files contain she-bangs, then make the executable
 245                       (when she-bang (set-file-modes file-name #o755))
 246                       ;; update counter
 247                       (setq block-counter (+ 1 block-counter))
 248                       (add-to-list 'path-collector file-name)))))
 249               specs)))
 250          (if (equal arg '(4))
 251              (org-babel-tangle-single-block 1 t)
 252            (org-babel-tangle-collect-blocks lang tangle-file)))
 253         (message "Tangled %d code block%s from %s" block-counter
 254                  (if (= block-counter 1) "" "s")
 255                  (file-name-nondirectory
 256                   (buffer-file-name (or (buffer-base-buffer) (current-buffer)))))
 257         ;; run `org-babel-post-tangle-hook' in all tangled files
 258         (when org-babel-post-tangle-hook
 259           (mapc
 260            (lambda (file)
 261              (org-babel-with-temp-filebuffer file
 262                (run-hooks 'org-babel-post-tangle-hook)))
 263            path-collector))
 264         path-collector))))
 265
 266 (defun org-babel-tangle-clean ()
 267   "Remove comments inserted by `org-babel-tangle'.
 268 Call this function inside of a source-code file generated by
 269 `org-babel-tangle' to remove all comments inserted automatically
 270 by `org-babel-tangle'.  Warning, this comment removes any lines
 271 containing constructs which resemble org-mode file links or noweb
 272 references."
 273   (interactive)
 274   (goto-char (point-min))
 275   (while (or (re-search-forward "\\[\\[file:.*\\]\\[.*\\]\\]" nil t)
 276              (re-search-forward (org-babel-noweb-wrap) nil t))
 277     (delete-region (save-excursion (beginning-of-line 1) (point))
 278                    (save-excursion (end-of-line 1) (forward-char 1) (point)))))
 279
 280 (defvar org-stored-links)
 281 (defvar org-bracket-link-regexp)
 282 (defun org-babel-spec-to-string (spec)
 283   "Insert SPEC into the current file.
 284
 285 Insert the source-code specified by SPEC into the current source
 286 code file.  This function uses `comment-region' which assumes
 287 that the appropriate major-mode is set.  SPEC has the form:
 288
 289   \(start-line file link source-name params body comment)"
 290   (let* ((start-line (nth 0 spec))
 291          (file (nth 1 spec))
 292          (link (nth 2 spec))
 293          (source-name (nth 3 spec))
 294          (body (nth 5 spec))
 295          (comment (nth 6 spec))
 296          (comments (cdr (assoc :comments (nth 4 spec))))
 297          (padline (not (string= "no" (cdr (assoc :padline (nth 4 spec))))))
 298          (link-p (or (string= comments "both") (string= comments "link")
 299                      (string= comments "yes") (string= comments "noweb")))
 300          (link-data (mapcar (lambda (el)
 301                               (cons (symbol-name el)
 302                                     ((lambda (le)
 303                                        (if (stringp le) le (format "%S" le)))
 304                                      (eval el))))
 305                             '(start-line file link source-name)))
 306          (insert-comment (lambda (text)
 307                            (when (and comments (not (string= comments "no"))
 308                                       (> (length text) 0))
 309                              (when padline (insert "\n"))
 310                              (comment-region (point) (progn (insert text) (point)))
 311                              (end-of-line nil) (insert "\n")))))
 312     (when comment (funcall insert-comment comment))
 313     (when link-p
 314       (funcall
 315        insert-comment
 316        (org-fill-template org-babel-tangle-comment-format-beg link-data)))
 317     (when padline (insert "\n"))
 318     (insert
 319      (format
 320       "%s\n"
 321       (org-unescape-code-in-string
 322        (org-babel-trim body (if org-src-preserve-indentation "[\f\n\r\v]")))))
 323     (when link-p
 324       (funcall
 325        insert-comment
 326        (org-fill-template org-babel-tangle-comment-format-end link-data)))))
 327
 328 (defvar org-comment-string) ;; Defined in org.el
 329 (defun org-babel-tangle-collect-blocks (&optional language tangle-file)
 330   "Collect source blocks in the current Org-mode file.
 331 Return an association list of source-code block specifications of
 332 the form used by `org-babel-spec-to-string' grouped by language.
 333 Optional argument LANGUAGE can be used to limit the collected
 334 source code blocks by language.  Optional argument TANGLE-FILE
 335 can be used to limit the collected code blocks by target file."
 336   (let ((block-counter 1) (current-heading "") blocks by-lang)
 337     (org-babel-map-src-blocks (buffer-file-name)
 338       (lambda (new-heading)
 339         (if (not (string= new-heading current-heading))
 340             (progn
 341               (setq block-counter 1)
 342               (setq current-heading new-heading))
 343           (setq block-counter (+ 1 block-counter))))
 344       (replace-regexp-in-string "[ \t]" "-"
 345                                 (condition-case nil
 346                                     (or (nth 4 (org-heading-components))
 347                                         "(dummy for heading without text)")
 348                                   (error (buffer-file-name))))
 349       (let* ((info (org-babel-get-src-block-info 'light))
 350              (src-lang (nth 0 info))
 351              (src-tfile (cdr (assoc :tangle (nth 2 info)))))
 352         (unless (or (string-match (concat "^" org-comment-string) current-heading)
 353                     (string= (cdr (assoc :tangle (nth 2 info))) "no")
 354                     (and tangle-file (not (equal tangle-file src-tfile))))
 355           (unless (and language (not (string= language src-lang)))
 356             ;; Add the spec for this block to blocks under it's language
 357             (setq by-lang (cdr (assoc src-lang blocks)))
 358             (setq blocks (delq (assoc src-lang blocks) blocks))
 359             (setq blocks (cons
 360                           (cons src-lang
 361                                 (cons
 362                                  (org-babel-tangle-single-block
 363                                   block-counter)
 364                                  by-lang)) blocks))))))
 365     ;; Ensure blocks are in the correct order
 366     (setq blocks
 367           (mapcar
 368            (lambda (by-lang) (cons (car by-lang) (reverse (cdr by-lang))))
 369            blocks))
 370     blocks))
 371
 372 (defun org-babel-tangle-single-block
 373   (block-counter &optional only-this-block)
 374   "Collect the tangled source for current block.
 375 Return the list of block attributes needed by
 376 `org-babel-tangle-collect-blocks'.
 377 When ONLY-THIS-BLOCK is non-nil, return the full association
 378 list to be used by `org-babel-tangle' directly."
 379   (let* ((info (org-babel-get-src-block-info))
 380          (start-line
 381           (save-restriction (widen)
 382                             (+ 1 (line-number-at-pos (point)))))
 383          (file (buffer-file-name))
 384          (src-lang (nth 0 info))
 385          (params (nth 2 info))
 386          (extra (nth 3 info))
 387          (cref-fmt (or (and (string-match "-l \"\\(.+\\)\"" extra)
 388                             (match-string 1 extra))
 389                        org-coderef-label-format))
 390          (link ((lambda (link)
 391                   (and (string-match org-bracket-link-regexp link)
 392                        (match-string 1 link)))
 393                 (org-no-properties
 394                  (org-store-link nil))))
 395          (source-name
 396           (intern (or (nth 4 info)
 397                       (format "%s:%d"
 398                               (or (ignore-errors (nth 4 (org-heading-components)))
 399                                   "No heading")
 400                               block-counter))))
 401          (expand-cmd
 402           (intern (concat "org-babel-expand-body:" src-lang)))
 403          (assignments-cmd
 404           (intern (concat "org-babel-variable-assignments:" src-lang)))
 405          (body
 406           ((lambda (body) ;; Run the tangle-body-hook
 407              (with-temp-buffer
 408                (insert body)
 409                (when (string-match "-r" extra)
 410                  (goto-char (point-min))
 411                  (while (re-search-forward
 412                          (replace-regexp-in-string "%s" ".+" cref-fmt) nil t)
 413                    (replace-match "")))
 414                (run-hooks 'org-babel-tangle-body-hook)
 415                (buffer-string)))
 416            ((lambda (body) ;; Expand the body in language specific manner
 417               (if (assoc :no-expand params)
 418                   body
 419                 (if (fboundp expand-cmd)
 420                     (funcall expand-cmd body params)
 421                   (org-babel-expand-body:generic
 422                    body params
 423                    (and (fboundp assignments-cmd)
 424                         (funcall assignments-cmd params))))))
 425             (if (org-babel-noweb-p params :tangle)
 426                 (org-babel-expand-noweb-references info)
 427               (nth 1 info)))))
 428          (comment
 429           (when (or (string= "both" (cdr (assoc :comments params)))
 430                     (string= "org" (cdr (assoc :comments params))))
 431             ;; From the previous heading or code-block end
 432             (funcall
 433              org-babel-process-comment-text
 434              (buffer-substring
 435               (max (condition-case nil
 436                        (save-excursion
 437                          (org-back-to-heading t)  ; Sets match data
 438                          (match-end 0))
 439                      (error (point-min)))
 440                    (save-excursion
 441                      (if (re-search-backward
 442                           org-babel-src-block-regexp nil t)
 443                          (match-end 0)
 444                        (point-min))))
 445               (point)))))
 446          (result
 447           (list start-line file link source-name params body comment)))
 448     (if only-this-block
 449         (list (cons src-lang (list result)))
 450       result)))
 451
 452 (defun org-babel-tangle-comment-links ( &optional info)
 453   "Return a list of begin and end link comments for the code block at point."
 454   (let* ((start-line (org-babel-where-is-src-block-head))
 455          (file (buffer-file-name))
 456          (link (org-link-escape (progn (call-interactively 'org-store-link)
 457                                        (org-no-properties
 458                                         (car (pop org-stored-links))))))
 459          (source-name (nth 4 (or info (org-babel-get-src-block-info 'light))))
 460          (link-data (mapcar (lambda (el)
 461                               (cons (symbol-name el)
 462                                     ((lambda (le)
 463                                        (if (stringp le) le (format "%S" le)))
 464                                      (eval el))))
 465                             '(start-line file link source-name))))
 466     (list (org-fill-template org-babel-tangle-comment-format-beg link-data)
 467           (org-fill-template org-babel-tangle-comment-format-end link-data))))
 468
 469 ;; de-tangling functions
 470 (defvar org-bracket-link-analytic-regexp)
 471 (defun org-babel-detangle (&optional source-code-file)
 472   "Propagate changes in source file back original to Org-mode file.
 473 This requires that code blocks were tangled with link comments
 474 which enable the original code blocks to be found."
 475   (interactive)
 476   (save-excursion
 477     (when source-code-file (find-file source-code-file))
 478     (goto-char (point-min))
 479     (let ((counter 0) new-body end)
 480       (while (re-search-forward org-bracket-link-analytic-regexp nil t)
 481         (when (re-search-forward
 482                (concat " " (regexp-quote (match-string 5)) " ends here"))
 483           (setq end (match-end 0))
 484           (forward-line -1)
 485           (save-excursion
 486             (when (setq new-body (org-babel-tangle-jump-to-org))
 487               (org-babel-update-block-body new-body)))
 488           (setq counter (+ 1 counter)))
 489         (goto-char end))
 490       (prog1 counter (message "Detangled %d code blocks" counter)))))
 491
 492 (defun org-babel-tangle-jump-to-org ()
 493   "Jump from a tangled code file to the related Org-mode file."
 494   (interactive)
 495   (let ((mid (point))
 496         start end done
 497         target-buffer target-char link path block-name body)
 498     (save-window-excursion
 499       (save-excursion
 500         (while (and (re-search-backward org-bracket-link-analytic-regexp nil t)
 501                     (not ; ever wider searches until matching block comments
 502                      (and (setq start (point-at-eol))
 503                           (setq link (match-string 0))
 504                           (setq path (match-string 3))
 505                           (setq block-name (match-string 5))
 506                           (save-excursion
 507                             (save-match-data
 508                               (re-search-forward
 509                                (concat " " (regexp-quote block-name)
 510                                        " ends here") nil t)
 511                               (setq end (point-at-bol))))))))
 512         (unless (and start (< start mid) (< mid end))
 513           (error "Not in tangled code"))
 514         (setq body (org-babel-trim (buffer-substring start end))))
 515       (when (string-match "::" path)
 516         (setq path (substring path 0 (match-beginning 0))))
 517       (find-file path) (setq target-buffer (current-buffer))
 518       (goto-char start) (org-open-link-from-string link)
 519       (if (string-match "[^ \t\n\r]:\\([[:digit:]]+\\)" block-name)
 520           (org-babel-next-src-block
 521            (string-to-number (match-string 1 block-name)))
 522         (org-babel-goto-named-src-block block-name))
 523       (setq target-char (point)))
 524     (pop-to-buffer target-buffer)
 525     (prog1 body (goto-char target-char))))
 526
 527 (provide 'ob-tangle)
 528
 529 ;; Local variables:
 530 ;; generated-autoload-file: "org-loaddefs.el"
 531 ;; End:
 532
 533 ;;; ob-tangle.el ends here