lisp/ob.el

   1 ;;; ob.el --- working with code blocks in org-mode
   2
   3 ;; Copyright (C) 2009, 2010  Free Software Foundation, Inc.
   4
   5 ;; Author: Eric Schulte, Dan Davison
   6 ;; Keywords: literate programming, reproducible research
   7 ;; Homepage: http://orgmode.org
   8 ;; Version: 7.6
   9
  10 ;; This file is part of GNU Emacs.
  11
  12 ;; GNU Emacs is free software: you can redistribute it and/or modify
  13 ;; it under the terms of the GNU General Public License as published by
  14 ;; the Free Software Foundation, either version 3 of the License, or
  15 ;; (at your option) any later version.
  16
  17 ;; GNU Emacs is distributed in the hope that it will be useful,
  18 ;; but WITHOUT ANY WARRANTY; without even the implied warranty of
  19 ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  20 ;; GNU General Public License for more details.
  21
  22 ;; You should have received a copy of the GNU General Public License
  23 ;; along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>.
  24
  25 ;;; Code:
  26 (eval-when-compile
  27   (require 'cl))
  28 (require 'ob-eval)
  29 (require 'org-macs)
  30
  31 (defvar org-babel-call-process-region-original)
  32 (defvar org-src-lang-modes)
  33 (defvar org-babel-library-of-babel)
  34 (declare-function show-all "outline" ())
  35 (declare-function tramp-compat-make-temp-file "tramp-compat"
  36                   (filename &optional dir-flag))
  37 (declare-function tramp-dissect-file-name "tramp" (name &optional nodefault))
  38 (declare-function tramp-file-name-user "tramp" (vec))
  39 (declare-function tramp-file-name-host "tramp" (vec))
  40 (declare-function with-parsed-tramp-file-name "tramp" (filename var &rest body))
  41 (declare-function org-icompleting-read "org" (&rest args))
  42 (declare-function org-edit-src-code "org-src"
  43                   (&optional context code edit-buffer-name quietp))
  44 (declare-function org-edit-src-exit "org-src"  (&optional context))
  45 (declare-function org-open-at-point "org" (&optional in-emacs reference-buffer))
  46 (declare-function org-save-outline-visibility "org" (use-markers &rest body))
  47 (declare-function org-outline-overlay-data "org" (&optional use-markers))
  48 (declare-function org-set-outline-overlay-data "org" (data))
  49 (declare-function org-narrow-to-subtree "org" ())
  50 (declare-function org-entry-get "org"
  51                   (pom property &optional inherit literal-nil))
  52 (declare-function org-make-options-regexp "org" (kwds &optional extra))
  53 (declare-function org-do-remove-indentation "org" (&optional n))
  54 (declare-function org-show-context "org" (&optional key))
  55 (declare-function org-at-table-p "org" (&optional table-type))
  56 (declare-function org-cycle "org" (&optional arg))
  57 (declare-function org-uniquify "org" (list))
  58 (declare-function org-current-level "org" ())
  59 (declare-function org-table-import "org-table" (file arg))
  60 (declare-function org-add-hook "org-compat"
  61                   (hook function &optional append local))
  62 (declare-function org-table-align "org-table" ())
  63 (declare-function org-table-end "org-table" (&optional table-type))
  64 (declare-function orgtbl-to-generic "org-table" (table params))
  65 (declare-function orgtbl-to-orgtbl "org-table" (table params))
  66 (declare-function org-babel-tangle-comment-links "ob-tangle" (&optional info))
  67 (declare-function org-babel-lob-get-info "ob-lob" nil)
  68 (declare-function org-babel-ref-split-args "ob-ref" (arg-string))
  69 (declare-function org-babel-ref-parse "ob-ref" (assignment))
  70 (declare-function org-babel-ref-resolve "ob-ref" (ref))
  71 (declare-function org-babel-ref-goto-headline-id "ob-ref" (id))
  72 (declare-function org-babel-ref-headline-body "ob-ref" ())
  73 (declare-function org-babel-lob-execute-maybe "ob-lob" ())
  74 (declare-function org-number-sequence "org-compat" (from &optional to inc))
  75 (declare-function org-at-item-p "org-list" ())
  76 (declare-function org-list-parse-list "org-list" (&optional delete))
  77 (declare-function org-list-to-generic "org-list" (LIST PARAMS))
  78 (declare-function org-list-struct "org-list" ())
  79 (declare-function org-list-prevs-alist "org-list" (struct))
  80 (declare-function org-list-get-list-end "org-list" (item struct prevs))
  81
  82 (defgroup org-babel nil
  83   "Code block evaluation and management in `org-mode' documents."
  84   :tag "Babel"
  85   :group 'org)
  86
  87 (defcustom org-confirm-babel-evaluate t
  88   "Confirm before evaluation.
  89 Require confirmation before interactively evaluating code
  90 blocks in Org-mode buffers.  The default value of this variable
  91 is t, meaning confirmation is required for any code block
  92 evaluation.  This variable can be set to nil to inhibit any
  93 future confirmation requests.  This variable can also be set to a
  94 function which takes two arguments the language of the code block
  95 and the body of the code block.  Such a function should then
  96 return a non-nil value if the user should be prompted for
  97 execution or nil if no prompt is required.
  98
  99 Warning: Disabling confirmation may result in accidental
 100 evaluation of potentially harmful code.  It may be advisable
 101 remove code block execution from C-c C-c as further protection
 102 against accidental code block evaluation.  The
 103 `org-babel-no-eval-on-ctrl-c-ctrl-c' variable can be used to
 104 remove code block execution from the C-c C-c keybinding."
 105     :group 'org-babel
 106     :type '(choice boolean function))
 107 ;; don't allow this variable to be changed through file settings
 108 (put 'org-confirm-babel-evaluate 'safe-local-variable (lambda (x) (eq x t)))
 109
 110 (defcustom org-babel-no-eval-on-ctrl-c-ctrl-c nil
 111   "Remove code block evaluation from the C-c C-c key binding."
 112   :group 'org-babel
 113   :type 'boolean)
 114
 115 (defvar org-babel-src-name-regexp
 116   "^[ \t]*#\\+\\(srcname\\|source\\|function\\):[ \t]*"
 117   "Regular expression used to match a source name line.")
 118
 119 (defvar org-babel-multi-line-header-regexp
 120   "^[ \t]*#\\+headers?:[ \t]*\\([^\n]*\\)$"
 121   "Regular expression used to match multi-line header arguments.")
 122
 123 (defvar org-babel-src-name-w-name-regexp
 124   (concat org-babel-src-name-regexp
 125           "\\("
 126           org-babel-multi-line-header-regexp
 127           "\\)*"
 128           "\\([^ ()\f\t\n\r\v]+\\)\\(\(\\(.*\\)\)\\|\\)")
 129   "Regular expression matching source name lines with a name.")
 130
 131 (defvar org-babel-src-block-regexp
 132   (concat
 133    ;; (1) indentation                 (2) lang
 134    "^\\([ \t]*\\)#\\+begin_src[ \t]+\\([^ \f\t\n\r\v]+\\)[ \t]*"
 135    ;; (3) switches
 136    "\\([^\":\n]*\"[^\"\n*]*\"[^\":\n]*\\|[^\":\n]*\\)"
 137    ;; (4) header arguments
 138    "\\([^\n]*\\)\n"
 139    ;; (5) body
 140    "\\([^\000]*?\\)[ \t]*#\\+end_src")
 141   "Regexp used to identify code blocks.")
 142
 143 (defvar org-babel-inline-src-block-regexp
 144   (concat
 145    ;; (1) replacement target (2) lang
 146    "[^-[:alnum:]]\\(src_\\([^ \f\t\n\r\v]+\\)"
 147    ;; (3,4) (unused, headers)
 148    "\\(\\|\\[\\(.*?\\)\\]\\)"
 149    ;; (5) body
 150    "{\\([^\f\n\r\v]+?\\)}\\)")
 151   "Regexp used to identify inline src-blocks.")
 152
 153 (defun org-babel-get-header (params key &optional others)
 154   "Select only header argument of type KEY from a list.
 155 Optional argument OTHERS indicates that only the header that do
 156 not match KEY should be returned."
 157   (delq nil
 158         (mapcar
 159          (lambda (p) (when (funcall (if others #'not #'identity) (eq (car p) key)) p))
 160          params)))
 161
 162 (defun org-babel-get-src-block-info (&optional light)
 163   "Get information on the current source block.
 164
 165 Optional argument LIGHT does not resolve remote variable
 166 references; a process which could likely result in the execution
 167 of other code blocks.
 168
 169 Returns a list
 170  (language body header-arguments-alist switches name indent)."
 171   (let ((case-fold-search t) head info name indent)
 172     ;; full code block
 173     (if (setq head (org-babel-where-is-src-block-head))
 174         (save-excursion
 175           (goto-char head)
 176           (setq info (org-babel-parse-src-block-match))
 177           (setq indent (car (last info)))
 178           (setq info (butlast info))
 179           (while (and (forward-line -1)
 180                       (looking-at org-babel-multi-line-header-regexp))
 181             (setf (nth 2 info)
 182                   (org-babel-merge-params
 183                    (nth 2 info)
 184                    (org-babel-parse-header-arguments (match-string 1)))))
 185           (when (looking-at org-babel-src-name-w-name-regexp)
 186             (setq name (org-babel-clean-text-properties (match-string 4)))
 187             (when (match-string 6)
 188               (setf (nth 2 info) ;; merge functional-syntax vars and header-args
 189                     (org-babel-merge-params
 190                      (mapcar (lambda (ref) (cons :var ref))
 191                              (org-babel-ref-split-args (match-string 6)))
 192                      (nth 2 info))))))
 193       ;; inline source block
 194       (when (save-excursion (re-search-backward "[ \f\t\n\r\v]" nil t)
 195                             (looking-at org-babel-inline-src-block-regexp))
 196         (setq info (org-babel-parse-inline-src-block-match))))
 197     ;; resolve variable references and add summary parameters
 198     (when (and info (not light))
 199       (setf (nth 2 info) (org-babel-process-params (nth 2 info))))
 200     (when info (append info (list name indent)))))
 201
 202 (defun org-babel-confirm-evaluate (info)
 203   "Confirm evaluation of the code block INFO.
 204 This behavior can be suppressed by setting the value of
 205 `org-confirm-babel-evaluate' to nil, in which case all future
 206 interactive code block evaluations will proceed without any
 207 confirmation from the user.
 208
 209 Note disabling confirmation may result in accidental evaluation
 210 of potentially harmful code."
 211   (let* ((eval (or (cdr (assoc :eval (nth 2 info)))
 212                    (when (assoc :noeval (nth 2 info)) "no")))
 213          (query (cond ((equal eval "query") t)
 214                       ((functionp org-confirm-babel-evaluate)
 215                        (funcall org-confirm-babel-evaluate
 216                                 (nth 0 info) (nth 1 info)))
 217                       (t org-confirm-babel-evaluate))))
 218     (if (or (equal eval "never") (equal eval "no")
 219             (and query
 220                  (not (yes-or-no-p
 221                        (format "Evaluate this%scode block%son your system? "
 222                                (if info (format " %s " (nth 0 info)) " ")
 223                                (if (nth 4 info)
 224                                    (format " (%s) " (nth 4 info)) " "))))))
 225         (prog1 nil (message "Evaluation %s"
 226                             (if (or (equal eval "never") (equal eval "no"))
 227                                 "Disabled" "Aborted")))
 228       t)))
 229
 230 ;;;###autoload
 231 (defun org-babel-execute-safely-maybe ()
 232   (unless org-babel-no-eval-on-ctrl-c-ctrl-c
 233     (org-babel-execute-maybe)))
 234
 235 (add-hook 'org-ctrl-c-ctrl-c-hook 'org-babel-execute-safely-maybe)
 236
 237 ;;;###autoload
 238 (defun org-babel-execute-maybe ()
 239   (interactive)
 240   (or (org-babel-execute-src-block-maybe)
 241       (org-babel-lob-execute-maybe)))
 242
 243 (defun org-babel-execute-src-block-maybe ()
 244   "Conditionally execute a source block.
 245 Detect if this is context for a Babel src-block and if so
 246 then run `org-babel-execute-src-block'."
 247   (interactive)
 248   (let ((info (org-babel-get-src-block-info)))
 249     (if info
 250         (progn (org-babel-eval-wipe-error-buffer)
 251                (org-babel-execute-src-block current-prefix-arg info) t) nil)))
 252
 253 ;;;###autoload
 254 (defun org-babel-view-src-block-info ()
 255   "Display information on the current source block.
 256 This includes header arguments, language and name, and is largely
 257 a window into the `org-babel-get-src-block-info' function."
 258   (interactive)
 259   (let ((info (org-babel-get-src-block-info 'light)))
 260     (flet ((full (it) (> (length it) 0))
 261            (printf (fmt &rest args) (princ (apply #'format fmt args))))
 262       (when info
 263         (with-help-window (help-buffer)
 264           (let ((name        (nth 4 info))
 265                 (lang        (nth 0 info))
 266                 (switches    (nth 3 info))
 267                 (header-args (nth 2 info)))
 268             (when name            (printf "Name: %s\n"     name))
 269             (when lang            (printf "Lang: %s\n"     lang))
 270             (when (full switches) (printf "Switches: %s\n" switches))
 271             (printf "Header Arguments:\n")
 272             (dolist (pair (sort header-args
 273                                 (lambda (a b) (string< (symbol-name (car a))
 274                                                   (symbol-name (car b))))))
 275               (when (full (cdr pair))
 276                 (printf "\t%S%s\t%s\n"
 277                         (car pair)
 278                         (if (> (length (format "%S" (car pair))) 7) "" "\t")
 279                         (cdr pair))))))))))
 280
 281 ;;;###autoload
 282 (defun org-babel-expand-src-block-maybe ()
 283   "Conditionally expand a source block.
 284 Detect if this is context for a org-babel src-block and if so
 285 then run `org-babel-expand-src-block'."
 286   (interactive)
 287   (let ((info (org-babel-get-src-block-info)))
 288     (if info
 289         (progn (org-babel-expand-src-block current-prefix-arg info) t)
 290       nil)))
 291
 292 ;;;###autoload
 293 (defun org-babel-load-in-session-maybe ()
 294   "Conditionally load a source block in a session.
 295 Detect if this is context for a org-babel src-block and if so
 296 then run `org-babel-load-in-session'."
 297   (interactive)
 298   (let ((info (org-babel-get-src-block-info)))
 299     (if info
 300         (progn (org-babel-load-in-session current-prefix-arg info) t)
 301       nil)))
 302
 303 (add-hook 'org-metaup-hook 'org-babel-load-in-session-maybe)
 304
 305 ;;;###autoload
 306 (defun org-babel-pop-to-session-maybe ()
 307   "Conditionally pop to a session.
 308 Detect if this is context for a org-babel src-block and if so
 309 then run `org-babel-pop-to-session'."
 310   (interactive)
 311   (let ((info (org-babel-get-src-block-info)))
 312     (if info (progn (org-babel-pop-to-session current-prefix-arg info) t) nil)))
 313
 314 (add-hook 'org-metadown-hook 'org-babel-pop-to-session-maybe)
 315
 316 (defconst org-babel-header-arg-names
 317   '(cache cmdline colnames dir exports file noweb results
 318     session tangle var eval noeval comments no-expand shebang
 319     padline noweb-ref)
 320   "Common header arguments used by org-babel.
 321 Note that individual languages may define their own language
 322 specific header arguments as well.")
 323
 324 (defvar org-babel-default-header-args
 325   '((:session . "none") (:results . "replace") (:exports . "code")
 326     (:cache . "no") (:noweb . "no") (:hlines . "no") (:tangle . "no")
 327     (:padnewline . "yes"))
 328   "Default arguments to use when evaluating a source block.")
 329
 330 (defvar org-babel-default-inline-header-args
 331   '((:session . "none") (:results . "replace") (:exports . "results"))
 332   "Default arguments to use when evaluating an inline source block.")
 333
 334 (defvar org-babel-data-names '("TBLNAME" "RESNAME" "RESULTS" "DATA"))
 335
 336 (defvar org-babel-result-regexp
 337   (concat "^[ \t]*#\\+"
 338           (regexp-opt org-babel-data-names t)
 339           "\\(\\[\\([[:alnum:]]+\\)\\]\\)?\\:[ \t]*")
 340   "Regular expression used to match result lines.
 341 If the results are associated with a hash key then the hash will
 342 be saved in the second match data.")
 343
 344 (defvar org-babel-result-w-name-regexp
 345   (concat org-babel-result-regexp
 346           "\\([^ ()\f\t\n\r\v]+\\)\\(\(\\(.*\\)\)\\|\\)"))
 347
 348 (defvar org-babel-min-lines-for-block-output 10
 349   "The minimum number of lines for block output.
 350 If number of lines of output is equal to or exceeds this
 351 value, the output is placed in a #+begin_example...#+end_example
 352 block. Otherwise the output is marked as literal by inserting
 353 colons at the starts of the lines. This variable only takes
 354 effect if the :results output option is in effect.")
 355
 356 (defvar org-babel-noweb-error-langs nil
 357   "Languages for which Babel will raise literate programming errors.
 358 List of languages for which errors should be raised when the
 359 source code block satisfying a noweb reference in this language
 360 can not be resolved.")
 361
 362 (defvar org-babel-hash-show 4
 363   "Number of initial characters to show of a hidden results hash.")
 364
 365 (defvar org-babel-after-execute-hook nil
 366   "Hook for functions to be called after `org-babel-execute-src-block'")
 367 (defun org-babel-named-src-block-regexp-for-name (name)
 368   "This generates a regexp used to match a src block named NAME."
 369   (concat org-babel-src-name-regexp (regexp-quote name) "[ \t\n]*"
 370           (substring org-babel-src-block-regexp 1)))
 371
 372 ;;; functions
 373 (defvar call-process-region)
 374 ;;;###autoload
 375
 376 (defun org-babel-execute-src-block (&optional arg info params)
 377   "Execute the current source code block.
 378 Insert the results of execution into the buffer.  Source code
 379 execution and the collection and formatting of results can be
 380 controlled through a variety of header arguments.
 381
 382 With prefix argument ARG, force re-execution even if a an
 383 existing result cached in the buffer would otherwise have been
 384 returned.
 385
 386 Optionally supply a value for INFO in the form returned by
 387 `org-babel-get-src-block-info'.
 388
 389 Optionally supply a value for PARAMS which will be merged with
 390 the header arguments specified at the front of the source code
 391 block."
 392   (interactive)
 393   (let ((info (or info (org-babel-get-src-block-info))))
 394     (when (org-babel-confirm-evaluate info)
 395       (let* ((lang (nth 0 info))
 396              (params (if params
 397                          (org-babel-process-params
 398                           (org-babel-merge-params (nth 2 info) params))
 399                        (nth 2 info)))
 400              (cache? (and (not arg) (cdr (assoc :cache params))
 401                           (string= "yes" (cdr (assoc :cache params)))))
 402              (result-params (cdr (assoc :result-params params)))
 403              (new-hash (when cache? (org-babel-sha1-hash info)))
 404              (old-hash (when cache? (org-babel-current-result-hash)))
 405              (body (setf (nth 1 info)
 406                          (let ((noweb (cdr (assoc :noweb params))))
 407                            (if (and noweb
 408                                     (or (string= "yes" noweb)
 409                                         (string= "tangle" noweb)))
 410                                (org-babel-expand-noweb-references info)
 411                              (nth 1 info)))))
 412              (dir (cdr (assoc :dir params)))
 413              (default-directory
 414                (or (and dir (file-name-as-directory dir)) default-directory))
 415              (org-babel-call-process-region-original
 416               (if (boundp 'org-babel-call-process-region-original)
 417                   org-babel-call-process-region-original
 418                 (symbol-function 'call-process-region)))
 419              (indent (car (last info)))
 420              result cmd)
 421         (unwind-protect
 422             (flet ((call-process-region (&rest args)
 423                     (apply 'org-babel-tramp-handle-call-process-region args)))
 424               (flet ((lang-check (f)
 425                        (let ((f (intern (concat "org-babel-execute:" f))))
 426                          (when (fboundp f) f))))
 427                 (setq cmd
 428                       (or (lang-check lang)
 429                           (lang-check (symbol-name
 430                                        (cdr (assoc lang org-src-lang-modes))))
 431                           (error "No org-babel-execute function for %s!" lang))))
 432               (if (and (not arg) new-hash (equal new-hash old-hash))
 433                   (save-excursion ;; return cached result
 434                     (goto-char (org-babel-where-is-src-block-result nil info))
 435                     (end-of-line 1) (forward-char 1)
 436                     (setq result (org-babel-read-result))
 437                     (message (replace-regexp-in-string
 438                               "%" "%%" (format "%S" result))) result)
 439                 (message "executing %s code block%s..."
 440                          (capitalize lang)
 441                          (if (nth 4 info) (format " (%s)" (nth 4 info)) ""))
 442                 (setq result
 443                       ((lambda (result)
 444                          (if (and (eq (cdr (assoc :result-type params)) 'value)
 445                                   (or (member "vector" result-params)
 446                                       (member "table" result-params))
 447                                   (not (listp result)))
 448                              (list (list result)) result))
 449                        (funcall cmd body params)))
 450                 ;; if non-empty result and :file then write to :file
 451                 (when (cdr (assoc :file params))
 452                   (when result
 453                     (with-temp-file (cdr (assoc :file params))
 454                       (insert
 455                        (org-babel-format-result
 456                         result (cdr (assoc :sep (nth 2 info)))))))
 457                   (setq result (cdr (assoc :file params))))
 458                 (org-babel-insert-result
 459                  result result-params info new-hash indent lang)
 460                 (run-hooks 'org-babel-after-execute-hook)
 461                 result))
 462           (setq call-process-region 'org-babel-call-process-region-original))))))
 463
 464 (defun org-babel-expand-body:generic (body params &optional var-lines)
 465   "Expand BODY with PARAMS.
 466 Expand a block of code with org-babel according to it's header
 467 arguments.  This generic implementation of body expansion is
 468 called for languages which have not defined their own specific
 469 org-babel-expand-body:lang function."
 470   (mapconcat #'identity (append var-lines (list body)) "\n"))
 471
 472 ;;;###autoload
 473 (defun org-babel-expand-src-block (&optional arg info params)
 474   "Expand the current source code block.
 475 Expand according to the source code block's header
 476 arguments and pop open the results in a preview buffer."
 477   (interactive)
 478   (let* ((info (or info (org-babel-get-src-block-info)))
 479          (lang (nth 0 info))
 480          (params (setf (nth 2 info)
 481                        (sort (org-babel-merge-params (nth 2 info) params)
 482                              (lambda (el1 el2) (string< (symbol-name (car el1))
 483                                                    (symbol-name (car el2)))))))
 484          (body (setf (nth 1 info)
 485                      (if (and (cdr (assoc :noweb params))
 486                               (string= "yes" (cdr (assoc :noweb params))))
 487                          (org-babel-expand-noweb-references info) (nth 1 info))))
 488          (expand-cmd (intern (concat "org-babel-expand-body:" lang)))
 489          (assignments-cmd (intern (concat "org-babel-variable-assignments:"
 490                                           lang)))
 491          (expanded
 492           (if (fboundp expand-cmd) (funcall expand-cmd body params)
 493             (org-babel-expand-body:generic
 494              body params (and (fboundp assignments-cmd)
 495                               (funcall assignments-cmd params))))))
 496     (org-edit-src-code
 497      nil expanded (concat "*Org-Babel Preview " (buffer-name) "[ " lang " ]*"))))
 498
 499 (defun org-babel-edit-distance (s1 s2)
 500   "Return the edit (levenshtein) distance between strings S1 S2."
 501   (let* ((l1 (length s1))
 502          (l2 (length s2))
 503          (dist (map 'vector (lambda (_) (make-vector (1+ l2) nil))
 504                     (number-sequence 1 (1+ l1)))))
 505     (flet ((in (i j) (aref (aref dist i) j))
 506            (mmin (&rest lst) (apply #'min (remove nil lst))))
 507       (setf (aref (aref dist 0) 0) 0)
 508       (dolist (i (number-sequence 1 l1))
 509         (dolist (j (number-sequence 1 l2))
 510           (setf (aref (aref dist i) j)
 511                 (+ (if (equal (aref s1 (1- i)) (aref s2 (1- j))) 0 1)
 512                    (mmin (in (1- i) j) (in i (1- j)) (in (1- i) (1- j)))))))
 513       (in l1 l2))))
 514
 515 ;;;###autoload
 516 (defun org-babel-check-src-block ()
 517   "Check for misspelled header arguments in the current code block."
 518   (interactive)
 519   ;; TODO: report malformed code block
 520   ;; TODO: report incompatible combinations of header arguments
 521   (let ((too-close 2)) ;; <- control closeness to report potential match
 522     (dolist (header (mapcar (lambda (arg) (substring (symbol-name (car arg)) 1))
 523                             (and (org-babel-where-is-src-block-head)
 524                                  (org-babel-parse-header-arguments
 525                                   (org-babel-clean-text-properties
 526                                    (match-string 4))))))
 527       (dolist (name (mapcar #'symbol-name org-babel-header-arg-names))
 528         (when (and (not (string= header name))
 529                    (<= (org-babel-edit-distance header name) too-close))
 530           (error "supplied header \"%S\" is suspiciously close to \"%S\""
 531                  header name))))
 532     (message "No suspicious header arguments found.")))
 533
 534 ;;;###autoload
 535 (defun org-babel-load-in-session (&optional arg info)
 536   "Load the body of the current source-code block.
 537 Evaluate the header arguments for the source block before
 538 entering the session.  After loading the body this pops open the
 539 session."
 540   (interactive)
 541   (let* ((info (or info (org-babel-get-src-block-info)))
 542          (lang (nth 0 info))
 543          (params (nth 2 info))
 544          (body (setf (nth 1 info)
 545                      (if (and (cdr (assoc :noweb params))
 546                               (string= "yes" (cdr (assoc :noweb params))))
 547                          (org-babel-expand-noweb-references info)
 548                        (nth 1 info))))
 549          (session (cdr (assoc :session params)))
 550          (dir (cdr (assoc :dir params)))
 551          (default-directory
 552            (or (and dir (file-name-as-directory dir)) default-directory))
 553          (cmd (intern (concat "org-babel-load-session:" lang))))
 554     (unless (fboundp cmd)
 555       (error "No org-babel-load-session function for %s!" lang))
 556     (pop-to-buffer (funcall cmd session body params))
 557     (end-of-line 1)))
 558
 559 ;;;###autoload
 560 (defun org-babel-initiate-session (&optional arg info)
 561   "Initiate session for current code block.
 562 If called with a prefix argument then resolve any variable
 563 references in the header arguments and assign these variables in
 564 the session. Copy the body of the code block to the kill ring."
 565   (interactive "P")
 566   (let* ((info (or info (org-babel-get-src-block-info (not arg))))
 567          (lang (nth 0 info))
 568          (body (nth 1 info))
 569          (params (nth 2 info))
 570          (session (cdr (assoc :session params)))
 571          (dir (cdr (assoc :dir params)))
 572          (default-directory
 573            (or (and dir (file-name-as-directory dir)) default-directory))
 574          (init-cmd (intern (format "org-babel-%s-initiate-session" lang)))
 575          (prep-cmd (intern (concat "org-babel-prep-session:" lang))))
 576     (if (and (stringp session) (string= session "none"))
 577         (error "This block is not using a session!"))
 578     (unless (fboundp init-cmd)
 579       (error "No org-babel-initiate-session function for %s!" lang))
 580     (with-temp-buffer (insert (org-babel-trim body))
 581                       (copy-region-as-kill (point-min) (point-max)))
 582     (when arg
 583       (unless (fboundp prep-cmd)
 584         (error "No org-babel-prep-session function for %s!" lang))
 585       (funcall prep-cmd session params))
 586     (funcall init-cmd session params)))
 587
 588 ;;;###autoload
 589 (defun org-babel-switch-to-session (&optional arg info)
 590   "Switch to the session of the current code block.
 591 Uses `org-babel-initiate-session' to start the session. If called
 592 with a prefix argument then this is passed on to
 593 `org-babel-initiate-session'."
 594   (interactive "P")
 595   (pop-to-buffer (org-babel-initiate-session arg info))
 596   (end-of-line 1))
 597
 598 (defalias 'org-babel-pop-to-session 'org-babel-switch-to-session)
 599
 600 ;;;###autoload
 601 (defun org-babel-switch-to-session-with-code (&optional arg info)
 602   "Switch to code buffer and display session."
 603   (interactive "P")
 604   (flet ((swap-windows
 605           ()
 606           (let ((other-window-buffer (window-buffer (next-window))))
 607             (set-window-buffer (next-window) (current-buffer))
 608             (set-window-buffer (selected-window) other-window-buffer))
 609           (other-window 1)))
 610     (let ((info (org-babel-get-src-block-info))
 611           (org-src-window-setup 'reorganize-frame))
 612       (save-excursion
 613         (org-babel-switch-to-session arg info))
 614       (org-edit-src-code))
 615     (swap-windows)))
 616
 617 (defmacro org-babel-do-in-edit-buffer (&rest body)
 618   "Evaluate BODY in edit buffer if there is a code block at point.
 619 Return t if a code block was found at point, nil otherwise."
 620   `(let ((org-src-window-setup 'switch-invisibly))
 621      (when (and (org-babel-where-is-src-block-head)
 622                 (org-edit-src-code nil nil nil))
 623        (unwind-protect (progn ,@body)
 624          (if (org-bound-and-true-p org-edit-src-from-org-mode)
 625              (org-edit-src-exit)))
 626        t)))
 627
 628 (defun org-babel-do-key-sequence-in-edit-buffer (key)
 629   "Read key sequence and execute the command in edit buffer.
 630 Enter a key sequence to be executed in the language major-mode
 631 edit buffer. For example, TAB will alter the contents of the
 632 Org-mode code block according to the effect of TAB in the
 633 language major-mode buffer. For languages that support
 634 interactive sessions, this can be used to send code from the Org
 635 buffer to the session for evaluation using the native major-mode
 636 evaluation mechanisms."
 637   (interactive "kEnter key-sequence to execute in edit buffer: ")
 638   (org-babel-do-in-edit-buffer
 639    (call-interactively
 640     (key-binding (or key (read-key-sequence nil))))))
 641
 642 (defvar org-bracket-link-regexp)
 643 ;;;###autoload
 644 (defun org-babel-open-src-block-result (&optional re-run)
 645   "If `point' is on a src block then open the results of the
 646 source code block, otherwise return nil.  With optional prefix
 647 argument RE-RUN the source-code block is evaluated even if
 648 results already exist."
 649   (interactive "P")
 650   (let ((info (org-babel-get-src-block-info)))
 651     (when info
 652       (save-excursion
 653         ;; go to the results, if there aren't any then run the block
 654         (goto-char (or (and (not re-run) (org-babel-where-is-src-block-result))
 655                        (progn (org-babel-execute-src-block)
 656                               (org-babel-where-is-src-block-result))))
 657         (end-of-line 1)
 658         (while (looking-at "[\n\r\t\f ]") (forward-char 1))
 659         ;; open the results
 660         (if (looking-at org-bracket-link-regexp)
 661             ;; file results
 662             (org-open-at-point)
 663           (let ((r (org-babel-format-result
 664                     (org-babel-read-result) (cdr (assoc :sep (nth 2 info))))))
 665             (pop-to-buffer (get-buffer-create "*Org-Babel Results*"))
 666             (delete-region (point-min) (point-max))
 667             (insert r)))
 668         t))))
 669
 670 ;;;###autoload
 671 (defmacro org-babel-map-src-blocks (file &rest body)
 672   "Evaluate BODY forms on each source-block in FILE.
 673 If FILE is nil evaluate BODY forms on source blocks in current
 674 buffer.  During evaluation of BODY the following local variables
 675 are set relative to the currently matched code block.
 676
 677 full-block ------- string holding the entirety of the code block
 678 beg-block -------- point at the beginning of the code block
 679 end-block -------- point at the end of the matched code block
 680 lang ------------- string holding the language of the code block
 681 beg-lang --------- point at the beginning of the lang
 682 end-lang --------- point at the end of the lang
 683 switches --------- string holding the switches
 684 beg-switches ----- point at the beginning of the switches
 685 end-switches ----- point at the end of the switches
 686 header-args ------ string holding the header-args
 687 beg-header-args -- point at the beginning of the header-args
 688 end-header-args -- point at the end of the header-args
 689 body ------------- string holding the body of the code block
 690 beg-body --------- point at the beginning of the body
 691 end-body --------- point at the end of the body"
 692   (declare (indent 1))
 693   (let ((tempvar (make-symbol "file")))
 694     `(let* ((,tempvar ,file)
 695             (visited-p (or (null ,tempvar)
 696                            (get-file-buffer (expand-file-name ,tempvar))))
 697             (point (point)) to-be-removed)
 698        (save-window-excursion
 699          (when ,tempvar (find-file ,tempvar))
 700          (setq to-be-removed (current-buffer))
 701          (goto-char (point-min))
 702          (while (re-search-forward org-babel-src-block-regexp nil t)
 703            (goto-char (match-beginning 0))
 704            (let ((full-block (match-string 0))
 705                  (beg-block (match-beginning 0))
 706                  (end-block (match-end 0))
 707                  (lang (match-string 2))
 708                  (beg-lang (match-beginning 2))
 709                  (end-lang (match-end 2))
 710                  (switches (match-string 3))
 711                  (beg-switches (match-beginning 3))
 712                  (end-switches (match-end 3))
 713                  (header-args (match-string 4))
 714                  (beg-header-args (match-beginning 4))
 715                  (end-header-args (match-end 4))
 716                  (body (match-string 5))
 717                  (beg-body (match-beginning 5))
 718                  (end-body (match-end 5)))
 719              ,@body
 720              (goto-char end-block))))
 721        (unless visited-p (kill-buffer to-be-removed))
 722        (goto-char point))))
 723
 724 ;;;###autoload
 725 (defmacro org-babel-map-inline-src-blocks (file &rest body)
 726   "Evaluate BODY forms on each inline source-block in FILE.
 727 If FILE is nil evaluate BODY forms on source blocks in current
 728 buffer."
 729   (declare (indent 1))
 730   (let ((tempvar (make-symbol "file")))
 731     `(let* ((,tempvar ,file)
 732             (visited-p (or (null ,tempvar)
 733                            (get-file-buffer (expand-file-name ,tempvar))))
 734             (point (point)) to-be-removed)
 735        (save-window-excursion
 736          (when ,tempvar (find-file ,tempvar))
 737          (setq to-be-removed (current-buffer))
 738          (goto-char (point-min))
 739          (while (re-search-forward org-babel-inline-src-block-regexp nil t)
 740            (goto-char (match-beginning 1))
 741            (save-match-data ,@body)
 742            (goto-char (match-end 0))))
 743        (unless visited-p (kill-buffer to-be-removed))
 744        (goto-char point))))
 745
 746 ;;;###autoload
 747 (defun org-babel-execute-buffer (&optional arg)
 748   "Execute source code blocks in a buffer.
 749 Call `org-babel-execute-src-block' on every source block in
 750 the current buffer."
 751   (interactive "P")
 752   (org-babel-eval-wipe-error-buffer)
 753   (org-save-outline-visibility t
 754     (org-babel-map-src-blocks nil
 755       (org-babel-execute-src-block arg))
 756     (org-babel-map-inline-src-blocks nil
 757       (org-babel-execute-src-block arg))))
 758
 759 ;;;###autoload
 760 (defun org-babel-execute-subtree (&optional arg)
 761   "Execute source code blocks in a subtree.
 762 Call `org-babel-execute-src-block' on every source block in
 763 the current subtree."
 764   (interactive "P")
 765   (save-restriction
 766     (save-excursion
 767       (org-narrow-to-subtree)
 768       (org-babel-execute-buffer arg)
 769       (widen))))
 770
 771 ;;;###autoload
 772 (defun org-babel-sha1-hash (&optional info)
 773   "Generate an sha1 hash based on the value of info."
 774   (interactive)
 775   (let ((print-level nil)
 776         (info (or info (org-babel-get-src-block-info))))
 777     (setf (nth 2 info)
 778           (sort (copy-sequence (nth 2 info))
 779                 (lambda (a b) (string< (car a) (car b)))))
 780     (labels ((rm (lst)
 781                  (dolist (p '("replace" "silent" "append" "prepend"))
 782                    (setq lst (remove p lst)))
 783                  lst)
 784              (norm (arg)
 785                    (let ((v (if (and (listp (cdr arg)) (null (cddr arg)))
 786                                 (copy-seq (cdr arg))
 787                               (cdr arg))))
 788                      (when (and v (not (and (sequencep v)
 789                                             (not (consp v))
 790                                             (= (length v) 0))))
 791                        (cond
 792                         ((and (listp v) ; lists are sorted
 793                               (member (car arg) '(:result-params)))
 794                          (sort (rm v) #'string<))
 795                         ((and (stringp v) ; strings are sorted
 796                               (member (car arg) '(:results :exports)))
 797                          (mapconcat #'identity (sort (rm (split-string v))
 798                                                      #'string<) " "))
 799                         (t v))))))
 800       ((lambda (hash)
 801          (when (org-called-interactively-p 'interactive) (message hash)) hash)
 802        (let ((it (format "%s-%s"
 803                          (mapconcat
 804                           #'identity
 805                           (delq nil (mapcar (lambda (arg)
 806                                               (let ((normalized (norm arg)))
 807                                                 (when normalized
 808                                                   (format "%S" normalized))))
 809                                             (nth 2 info))) ":")
 810                          (nth 1 info))))
 811          (sha1 it))))))
 812
 813 (defun org-babel-current-result-hash ()
 814   "Return the in-buffer hash associated with INFO."
 815   (org-babel-where-is-src-block-result)
 816   (org-babel-clean-text-properties (match-string 3)))
 817
 818 (defun org-babel-hide-hash ()
 819   "Hide the hash in the current results line.
 820 Only the initial `org-babel-hash-show' characters of the hash
 821 will remain visible."
 822   (add-to-invisibility-spec '(org-babel-hide-hash . t))
 823   (save-excursion
 824     (when (and (re-search-forward org-babel-result-regexp nil t)
 825                (match-string 3))
 826       (let* ((start (match-beginning 3))
 827              (hide-start (+ org-babel-hash-show start))
 828              (end (match-end 3))
 829              (hash (match-string 3))
 830              ov1 ov2)
 831         (setq ov1 (make-overlay start hide-start))
 832         (setq ov2 (make-overlay hide-start end))
 833         (overlay-put ov2 'invisible 'org-babel-hide-hash)
 834         (overlay-put ov1 'babel-hash hash)))))
 835
 836 (defun org-babel-hide-all-hashes ()
 837   "Hide the hash in the current buffer.
 838 Only the initial `org-babel-hash-show' characters of each hash
 839 will remain visible.  This function should be called as part of
 840 the `org-mode-hook'."
 841   (save-excursion
 842     (while (re-search-forward org-babel-result-regexp nil t)
 843       (goto-char (match-beginning 0))
 844       (org-babel-hide-hash)
 845       (goto-char (match-end 0)))))
 846 (add-hook 'org-mode-hook 'org-babel-hide-all-hashes)
 847
 848 (defun org-babel-hash-at-point (&optional point)
 849   "Return the value of the hash at POINT.
 850 The hash is also added as the last element of the kill ring.
 851 This can be called with C-c C-c."
 852   (interactive)
 853   (let ((hash (car (delq nil (mapcar
 854                               (lambda (ol) (overlay-get ol 'babel-hash))
 855                               (overlays-at (or point (point))))))))
 856     (when hash (kill-new hash) (message hash))))
 857 (add-hook 'org-ctrl-c-ctrl-c-hook 'org-babel-hash-at-point)
 858
 859 (defun org-babel-result-hide-spec ()
 860   "Hide portions of results lines.
 861 Add `org-babel-hide-result' as an invisibility spec for hiding
 862 portions of results lines."
 863   (add-to-invisibility-spec '(org-babel-hide-result . t)))
 864 (add-hook 'org-mode-hook 'org-babel-result-hide-spec)
 865
 866 (defvar org-babel-hide-result-overlays nil
 867   "Overlays hiding results.")
 868
 869 (defun org-babel-result-hide-all ()
 870   "Fold all results in the current buffer."
 871   (interactive)
 872   (org-babel-show-result-all)
 873   (save-excursion
 874     (while (re-search-forward org-babel-result-regexp nil t)
 875       (save-excursion (goto-char (match-beginning 0))
 876                       (org-babel-hide-result-toggle-maybe)))))
 877
 878 (defun org-babel-show-result-all ()
 879   "Unfold all results in the current buffer."
 880   (mapc 'delete-overlay org-babel-hide-result-overlays)
 881   (setq org-babel-hide-result-overlays nil))
 882
 883 ;;;###autoload
 884 (defun org-babel-hide-result-toggle-maybe ()
 885   "Toggle visibility of result at point."
 886   (interactive)
 887   (let ((case-fold-search t))
 888     (if (save-excursion
 889           (beginning-of-line 1)
 890           (looking-at org-babel-result-regexp))
 891         (progn (org-babel-hide-result-toggle)
 892                t) ;; to signal that we took action
 893       nil))) ;; to signal that we did not
 894
 895 (defun org-babel-hide-result-toggle (&optional force)
 896   "Toggle the visibility of the current result."
 897   (interactive)
 898   (save-excursion
 899     (beginning-of-line)
 900     (if (re-search-forward org-babel-result-regexp nil t)
 901         (let ((start (progn (beginning-of-line 2) (- (point) 1)))
 902               (end (progn (goto-char (- (org-babel-result-end) 1)) (point)))
 903               ov)
 904           (if (memq t (mapcar (lambda (overlay)
 905                                 (eq (overlay-get overlay 'invisible)
 906                                     'org-babel-hide-result))
 907                               (overlays-at start)))
 908               (if (or (not force) (eq force 'off))
 909                   (mapc (lambda (ov)
 910                           (when (member ov org-babel-hide-result-overlays)
 911                             (setq org-babel-hide-result-overlays
 912                                   (delq ov org-babel-hide-result-overlays)))
 913                           (when (eq (overlay-get ov 'invisible)
 914                                     'org-babel-hide-result)
 915                             (delete-overlay ov)))
 916                         (overlays-at start)))
 917             (setq ov (make-overlay start end))
 918             (overlay-put ov 'invisible 'org-babel-hide-result)
 919             ;; make the block accessible to isearch
 920             (overlay-put
 921              ov 'isearch-open-invisible
 922              (lambda (ov)
 923                (when (member ov org-babel-hide-result-overlays)
 924                  (setq org-babel-hide-result-overlays
 925                        (delq ov org-babel-hide-result-overlays)))
 926                (when (eq (overlay-get ov 'invisible)
 927                          'org-babel-hide-result)
 928                  (delete-overlay ov))))
 929             (push ov org-babel-hide-result-overlays)))
 930       (error "Not looking at a result line"))))
 931
 932 ;; org-tab-after-check-for-cycling-hook
 933 (add-hook 'org-tab-first-hook 'org-babel-hide-result-toggle-maybe)
 934 ;; Remove overlays when changing major mode
 935 (add-hook 'org-mode-hook
 936           (lambda () (org-add-hook 'change-major-mode-hook
 937                                    'org-babel-show-result-all 'append 'local)))
 938
 939 (defvar org-file-properties)
 940 (defun org-babel-params-from-properties (&optional lang)
 941   "Retrieve parameters specified as properties.
 942 Return an association list of any source block params which
 943 may be specified in the properties of the current outline entry."
 944   (save-match-data
 945     (let (val sym)
 946       (delq nil
 947             (mapcar
 948              (lambda (header-arg)
 949                (and (setq val
 950                           (or (org-entry-get (point) header-arg t)
 951                               (org-entry-get (point) (concat ":" header-arg) t)))
 952                     (cons (intern (concat ":" header-arg))
 953                           (org-babel-read val))))
 954              (mapcar
 955               'symbol-name
 956               (append
 957                org-babel-header-arg-names
 958                (progn
 959                  (setq sym (intern (concat "org-babel-header-arg-names:" lang)))
 960                  (and (boundp sym) (eval sym))))))))))
 961
 962 (defun org-babel-params-from-buffer ()
 963   "Retrieve per-buffer parameters.
 964  Return an association list of any source block params which
 965 may be specified in the current buffer."
 966   (let (local-properties)
 967     (save-match-data
 968       (save-excursion
 969         (save-restriction
 970           (widen)
 971           (goto-char (point-min))
 972           (while (re-search-forward
 973                   (org-make-options-regexp (list "BABEL" "PROPERTIES")) nil t)
 974             (setq local-properties
 975                   (org-babel-merge-params
 976                    local-properties
 977                    (org-babel-parse-header-arguments
 978                     (org-match-string-no-properties 2)))))
 979           local-properties)))))
 980
 981 (defvar org-src-preserve-indentation)
 982 (defun org-babel-parse-src-block-match ()
 983   "Parse the results from a match of the `org-babel-src-block-regexp'."
 984   (let* ((block-indentation (length (match-string 1)))
 985          (lang (org-babel-clean-text-properties (match-string 2)))
 986          (lang-headers (intern (concat "org-babel-default-header-args:" lang)))
 987          (switches (match-string 3))
 988          (body (org-babel-clean-text-properties
 989                 (let* ((body (match-string 5))
 990                        (sub-length (- (length body) 1)))
 991                   (if (string= "\n" (substring body sub-length))
 992                       (substring body 0 sub-length)
 993                     body))))
 994          (preserve-indentation (or org-src-preserve-indentation
 995                                    (string-match "-i\\>" switches))))
 996     (list lang
 997           ;; get block body less properties, protective commas, and indentation
 998           (with-temp-buffer
 999             (save-match-data
1000               (insert (org-babel-strip-protective-commas body))
1001               (unless preserve-indentation (org-do-remove-indentation))
1002               (buffer-string)))
1003           (org-babel-merge-params
1004            org-babel-default-header-args
1005            (org-babel-params-from-buffer)
1006            (org-babel-params-from-properties lang)
1007            (if (boundp lang-headers) (eval lang-headers) nil)
1008            (org-babel-parse-header-arguments
1009             (org-babel-clean-text-properties (or (match-string 4) ""))))
1010           switches
1011           block-indentation)))
1012
1013 (defun org-babel-parse-inline-src-block-match ()
1014   "Parse the results from a match of the `org-babel-inline-src-block-regexp'."
1015   (let* ((lang (org-babel-clean-text-properties (match-string 2)))
1016          (lang-headers (intern (concat "org-babel-default-header-args:" lang))))
1017     (list lang
1018           (org-babel-strip-protective-commas
1019            (org-babel-clean-text-properties (match-string 5)))
1020           (org-babel-merge-params
1021            org-babel-default-inline-header-args
1022            (org-babel-params-from-buffer)
1023            (org-babel-params-from-properties lang)
1024            (if (boundp lang-headers) (eval lang-headers) nil)
1025            (org-babel-parse-header-arguments
1026             (org-babel-clean-text-properties (or (match-string 4) "")))))))
1027
1028 (defun org-babel-parse-header-arguments (arg-string)
1029   "Parse a string of header arguments returning an alist."
1030   (when (> (length arg-string) 0)
1031     (delq nil
1032           (mapcar
1033            (lambda (arg)
1034              (if (string-match
1035                   "\\([^ \f\t\n\r\v]+\\)[ \f\t\n\r\v]+\\([^ \f\t\n\r\v]+.*\\)"
1036                   arg)
1037                  (cons (intern (match-string 1 arg))
1038                        (org-babel-read (org-babel-chomp (match-string 2 arg))))
1039                (cons (intern (org-babel-chomp arg)) nil)))
1040            (let ((balance 0) (partial nil) (lst nil) (last 0))
1041              (mapc (lambda (ch)  ; split on [] balanced instances of [ \t]:
1042                      (setq balance (+ balance
1043                                       (cond ((equal 91 ch) 1)
1044                                             ((equal 93 ch) -1)
1045                                             (t 0))))
1046                      (setq partial (cons ch partial))
1047                      (when (and (= ch 58) (= balance 0)
1048                                 (or (= last 32) (= last 9)))
1049                        (setq lst (cons (apply #'string (nreverse (cddr partial)))
1050                                        lst))
1051                        (setq partial (list ch)))
1052                      (setq last ch))
1053                    (string-to-list arg-string))
1054              (nreverse (cons (apply #'string (nreverse partial)) lst)))))))
1055
1056 (defun org-babel-process-params (params)
1057   "Expand variables in PARAMS and add summary parameters."
1058   (let* ((vars-and-names (org-babel-disassemble-tables
1059                           (mapcar (lambda (el)
1060                                     (if (consp (cdr el))
1061                                         (cdr el) (org-babel-ref-parse (cdr el))))
1062                                   (org-babel-get-header params :var))
1063                           (cdr (assoc :hlines params))
1064                           (cdr (assoc :colnames params))
1065                           (cdr (assoc :rownames params))))
1066          (raw-result (or (cdr (assoc :results params)) ""))
1067          (result-params (append
1068                          (split-string (if (stringp raw-result)
1069                                            raw-result
1070                                          (eval raw-result)))
1071                          (cdr (assoc :result-params params)))))
1072     (append
1073      (mapcar (lambda (var) (cons :var var)) (car vars-and-names))
1074      (list
1075       (cons :colname-names (or (cdr (assoc :colname-names params))
1076                                (cadr  vars-and-names)))
1077       (cons :rowname-names (or (cdr (assoc :rowname-names params))
1078                                (caddr vars-and-names)))
1079       (cons :result-params result-params)
1080       (cons :result-type  (cond ((member "output" result-params) 'output)
1081                                 ((member "value" result-params) 'value)
1082                                 (t 'value))))
1083      (org-babel-get-header params :var 'other))))
1084
1085 ;; row and column names
1086 (defun org-babel-del-hlines (table)
1087   "Remove all 'hlines from TABLE."
1088   (remove 'hline table))
1089
1090 (defun org-babel-get-colnames (table)
1091   "Return the column names of TABLE.
1092 Return a cons cell, the `car' of which contains the TABLE less
1093 colnames, and the `cdr' of which contains a list of the column
1094 names."
1095   (if (equal 'hline (nth 1 table))
1096       (cons (cddr table) (car table))
1097     (cons (cdr table) (car table))))
1098
1099 (defun org-babel-get-rownames (table)
1100   "Return the row names of TABLE.
1101 Return a cons cell, the `car' of which contains the TABLE less
1102 colnames, and the `cdr' of which contains a list of the column
1103 names.  Note: this function removes any hlines in TABLE."
1104   (flet ((trans (table) (apply #'mapcar* #'list table)))
1105     (let* ((width (apply 'max
1106                          (mapcar (lambda (el) (if (listp el) (length el) 0)) table)))
1107            (table (trans (mapcar (lambda (row)
1108                                    (if (not (equal row 'hline))
1109                                        row
1110                                      (setq row '())
1111                                      (dotimes (n width)
1112                                        (setq row (cons 'hline row)))
1113                                      row))
1114                                  table))))
1115       (cons (mapcar (lambda (row) (if (equal (car row) 'hline) 'hline row))
1116                     (trans (cdr table)))
1117             (remove 'hline (car table))))))
1118
1119 (defun org-babel-put-colnames (table colnames)
1120   "Add COLNAMES to TABLE if they exist."
1121   (if colnames (apply 'list colnames 'hline table) table))
1122
1123 (defun org-babel-put-rownames (table rownames)
1124   "Add ROWNAMES to TABLE if they exist."
1125   (if rownames
1126       (mapcar (lambda (row)
1127                 (if (listp row)
1128                     (cons (or (pop rownames) "") row)
1129                   row)) table)
1130     table))
1131
1132 (defun org-babel-pick-name (names selector)
1133   "Select one out of an alist of row or column names.
1134 SELECTOR can be either a list of names in which case those names
1135 will be returned directly, or an index into the list NAMES in
1136 which case the indexed names will be return."
1137   (if (listp selector)
1138       selector
1139     (when names
1140       (if (and selector (symbolp selector) (not (equal t selector)))
1141           (cdr (assoc selector names))
1142         (if (integerp selector)
1143             (nth (- selector 1) names)
1144           (cdr (car (last names))))))))
1145
1146 (defun org-babel-disassemble-tables (vars hlines colnames rownames)
1147   "Parse tables for further processing.
1148 Process the variables in VARS according to the HLINES,
1149 ROWNAMES and COLNAMES header arguments.  Return a list consisting
1150 of the vars, cnames and rnames."
1151   (let (cnames rnames)
1152     (list
1153      (mapcar
1154       (lambda (var)
1155         (when (listp (cdr var))
1156           (when (and (not (equal colnames "no"))
1157                      (or colnames (and (equal (nth 1 (cdr var)) 'hline)
1158                                        (not (member 'hline (cddr (cdr var)))))))
1159             (let ((both (org-babel-get-colnames (cdr var))))
1160               (setq cnames (cons (cons (car var) (cdr both))
1161                                  cnames))
1162               (setq var (cons (car var) (car both)))))
1163           (when (and rownames (not (equal rownames "no")))
1164             (let ((both (org-babel-get-rownames (cdr var))))
1165               (setq rnames (cons (cons (car var) (cdr both))
1166                                  rnames))
1167               (setq var (cons (car var) (car both)))))
1168           (when (and hlines (not (equal hlines "yes")))
1169             (setq var (cons (car var) (org-babel-del-hlines (cdr var))))))
1170         var)
1171       vars)
1172      cnames rnames)))
1173
1174 (defun org-babel-reassemble-table (table colnames rownames)
1175   "Add column and row names to a table.
1176 Given a TABLE and set of COLNAMES and ROWNAMES add the names
1177 to the table for reinsertion to org-mode."
1178   (if (listp table)
1179       ((lambda (table)
1180          (if (and colnames (listp (car table)) (= (length (car table))
1181                                                   (length colnames)))
1182              (org-babel-put-colnames table colnames) table))
1183        (if (and rownames (= (length table) (length rownames)))
1184            (org-babel-put-rownames table rownames) table))
1185     table))
1186
1187 (defun org-babel-where-is-src-block-head ()
1188   "Find where the current source block begins.
1189 Return the point at the beginning of the current source
1190 block.  Specifically at the beginning of the #+BEGIN_SRC line.
1191 If the point is not on a source block then return nil."
1192   (let ((initial (point)) top bottom)
1193     (or
1194      (save-excursion ;; on a source name line or a #+header line
1195        (beginning-of-line 1)
1196        (and (or (looking-at org-babel-src-name-regexp)
1197                 (looking-at org-babel-multi-line-header-regexp))
1198             (progn
1199               (while (and (forward-line 1)
1200                           (looking-at org-babel-multi-line-header-regexp)))
1201               (looking-at org-babel-src-block-regexp))
1202             (point)))
1203      (save-excursion ;; on a #+begin_src line
1204        (beginning-of-line 1)
1205        (and (looking-at org-babel-src-block-regexp)
1206             (point)))
1207      (save-excursion ;; inside a src block
1208        (and
1209         (re-search-backward "^[ \t]*#\\+begin_src" nil t) (setq top (point))
1210         (re-search-forward "^[ \t]*#\\+end_src" nil t) (setq bottom (point))
1211         (< top initial) (< initial bottom)
1212         (progn (goto-char top) (beginning-of-line 1)
1213                (looking-at org-babel-src-block-regexp))
1214         (point))))))
1215
1216 ;;;###autoload
1217 (defun org-babel-goto-src-block-head ()
1218   "Go to the beginning of the current code block."
1219   (interactive)
1220   ((lambda (head)
1221      (if head (goto-char head) (error "not currently in a code block")))
1222    (org-babel-where-is-src-block-head)))
1223
1224 ;;;###autoload
1225 (defun org-babel-goto-named-src-block (name)
1226   "Go to a named source-code block."
1227   (interactive
1228    (let ((completion-ignore-case t))
1229      (list (org-icompleting-read "source-block name: "
1230                                  (org-babel-src-block-names) nil t))))
1231   (let ((point (org-babel-find-named-block name)))
1232     (if point
1233         ;; taken from `org-open-at-point'
1234         (progn (goto-char point) (org-show-context))
1235       (message "source-code block '%s' not found in this buffer" name))))
1236
1237 (defun org-babel-find-named-block (name)
1238   "Find a named source-code block.
1239 Return the location of the source block identified by source
1240 NAME, or nil if no such block exists. Set match data according to
1241 org-babel-named-src-block-regexp."
1242   (save-excursion
1243     (let ((case-fold-search t)
1244           (regexp (org-babel-named-src-block-regexp-for-name name)) msg)
1245       (goto-char (point-min))
1246       (when (or (re-search-forward regexp nil t)
1247                 (re-search-backward regexp nil t))
1248         (match-beginning 0)))))
1249
1250 (defun org-babel-src-block-names (&optional file)
1251   "Returns the names of source blocks in FILE or the current buffer."
1252   (save-excursion
1253     (when file (find-file file)) (goto-char (point-min))
1254     (let (names)
1255       (while (re-search-forward org-babel-src-name-w-name-regexp nil t)
1256         (setq names (cons (match-string 4) names)))
1257       names)))
1258
1259 ;;;###autoload
1260 (defun org-babel-goto-named-result (name)
1261   "Go to a named result."
1262   (interactive
1263    (let ((completion-ignore-case t))
1264      (list (org-icompleting-read "source-block name: "
1265                                  (org-babel-result-names) nil t))))
1266   (let ((point (org-babel-find-named-result name)))
1267     (if point
1268         ;; taken from `org-open-at-point'
1269         (progn (goto-char point) (org-show-context))
1270       (message "result '%s' not found in this buffer" name))))
1271
1272 (defun org-babel-find-named-result (name)
1273   "Find a named result.
1274 Return the location of the result named NAME in the current
1275 buffer or nil if no such result exists."
1276   (save-excursion
1277     (goto-char (point-min))
1278     (when (re-search-forward
1279            (concat org-babel-result-regexp
1280                    "[ \t]" (regexp-quote name) "[ \t\n\f\v\r]") nil t)
1281       (beginning-of-line 0) (point))))
1282
1283 (defun org-babel-result-names (&optional file)
1284   "Returns the names of results in FILE or the current buffer."
1285   (save-excursion
1286     (when file (find-file file)) (goto-char (point-min))
1287     (let (names)
1288       (while (re-search-forward org-babel-result-w-name-regexp nil t)
1289         (setq names (cons (match-string 4) names)))
1290       names)))
1291
1292 ;;;###autoload
1293 (defun org-babel-next-src-block (&optional arg)
1294   "Jump to the next source block.
1295 With optional prefix argument ARG, jump forward ARG many source blocks."
1296   (interactive "P")
1297   (when (looking-at org-babel-src-block-regexp) (forward-char 1))
1298   (condition-case nil
1299       (re-search-forward org-babel-src-block-regexp nil nil (or arg 1))
1300     (error (error "No further code blocks")))
1301   (goto-char (match-beginning 0)) (org-show-context))
1302
1303 ;;;###autoload
1304 (defun org-babel-previous-src-block (&optional arg)
1305   "Jump to the previous source block.
1306 With optional prefix argument ARG, jump backward ARG many source blocks."
1307   (interactive "P")
1308   (condition-case nil
1309       (re-search-backward org-babel-src-block-regexp nil nil (or arg 1))
1310     (error (error "No previous code blocks")))
1311   (goto-char (match-beginning 0)) (org-show-context))
1312
1313 (defvar org-babel-load-languages)
1314
1315 ;;;###autoload
1316 (defun org-babel-mark-block ()
1317   "Mark current src block"
1318   (interactive)
1319   ((lambda (head)
1320      (when head
1321        (save-excursion
1322          (goto-char head)
1323          (looking-at org-babel-src-block-regexp))
1324        (push-mark (match-end 5) nil t)
1325        (goto-char (match-beginning 5))))
1326    (org-babel-where-is-src-block-head)))
1327
1328 (defun org-babel-demarcate-block (&optional arg)
1329   "Wrap or split the code in the region or on the point.
1330 When called from inside of a code block the current block is
1331 split.  When called from outside of a code block a new code block
1332 is created.  In both cases if the region is demarcated and if the
1333 region is not active then the point is demarcated."
1334   (interactive "P")
1335   (let ((info (org-babel-get-src-block-info 'light))
1336         (stars (concat (make-string (or (org-current-level) 1) ?*) " ")))
1337     (if info
1338         (mapc
1339          (lambda (place)
1340            (save-excursion
1341              (goto-char place)
1342              (let ((lang (nth 0 info))
1343                    (indent (make-string (nth 5 info) ? )))
1344                (when (string-match "^[[:space:]]*$"
1345                                    (buffer-substring (point-at-bol)
1346                                                      (point-at-eol)))
1347                  (delete-region (point-at-bol) (point-at-eol)))
1348                (insert (concat (if (looking-at "^") "" "\n")
1349                                indent "#+end_src\n"
1350                                (if arg stars indent) "\n"
1351                                indent "#+begin_src " lang
1352                                (if (looking-at "[\n\r]") "" "\n")))))
1353            (move-end-of-line 2))
1354          (sort (if (region-active-p) (list (mark) (point)) (list (point))) #'>))
1355       (let ((start (point))
1356             (lang (org-icompleting-read "Lang: "
1357                                         (mapcar (lambda (el) (symbol-name (car el)))
1358                                                 org-babel-load-languages)))
1359             (body (delete-and-extract-region
1360                    (if (region-active-p) (mark) (point)) (point))))
1361         (insert (concat (if (looking-at "^") "" "\n")
1362                         (if arg (concat stars "\n") "")
1363                         "#+begin_src " lang "\n"
1364                         body
1365                         (if (or (= (length body) 0)
1366                                 (string-match "[\r\n]$" body)) "" "\n")
1367                         "#+end_src\n"))
1368         (goto-char start) (move-end-of-line 1)))))
1369
1370 (defvar org-babel-lob-one-liner-regexp)
1371 (defvar org-babel-inline-lob-one-liner-regexp)
1372 (defun org-babel-where-is-src-block-result (&optional insert info hash indent)
1373   "Find where the current source block results begin.
1374 Return the point at the beginning of the result of the current
1375 source block.  Specifically at the beginning of the results line.
1376 If no result exists for this block then create a results line
1377 following the source block."
1378   (save-excursion
1379     (let* ((on-lob-line (save-excursion
1380                           (beginning-of-line 1)
1381                           (looking-at org-babel-lob-one-liner-regexp)))
1382            (inlinep (save-excursion
1383                       (re-search-backward "[ \f\t\n\r\v]" nil t)
1384                       (when (looking-at org-babel-inline-src-block-regexp)
1385                         (match-end 0))))
1386            (name (if on-lob-line
1387                      (nth 0 (org-babel-lob-get-info))
1388                    (nth 4 (or info (org-babel-get-src-block-info)))))
1389            (head (unless on-lob-line (org-babel-where-is-src-block-head)))
1390            found beg end)
1391       (when head (goto-char head))
1392       (setq
1393        found ;; was there a result (before we potentially insert one)
1394        (or
1395         inlinep
1396         (and
1397          ;; named results:
1398          ;; - return t if it is found, else return nil
1399          ;; - if it does not need to be rebuilt, then don't set end
1400          ;; - if it does need to be rebuilt then do set end
1401          name (setq beg (org-babel-find-named-result name))
1402          (prog1 beg
1403            (when (and hash (not (string= hash (match-string 3))))
1404              (goto-char beg) (setq end beg) ;; beginning of result
1405              (forward-line 1)
1406              (delete-region end (org-babel-result-end)) nil)))
1407         (and
1408          ;; unnamed results:
1409          ;; - return t if it is found, else return nil
1410          ;; - if it is found, and the hash doesn't match, delete and set end
1411          (or on-lob-line (re-search-forward "^[ \t]*#\\+end_src" nil t))
1412          (progn (end-of-line 1)
1413                 (if (eobp) (insert "\n") (forward-char 1))
1414                 (setq end (point))
1415                 (or (and (not name)
1416                          (progn ;; unnamed results line already exists
1417                            (re-search-forward "[^ \f\t\n\r\v]" nil t)
1418                            (beginning-of-line 1)
1419                            (looking-at
1420                             (concat org-babel-result-regexp "\n")))
1421                          (prog1 (point)
1422                            ;; must remove and rebuild if hash!=old-hash
1423                            (if (and hash (not (string= hash (match-string 3))))
1424                                (prog1 nil
1425                                  (forward-line 1)
1426                                  (delete-region
1427                                   end (org-babel-result-end)))
1428                              (setq end nil)))))))))
1429       (if (and insert end)
1430           (progn
1431             (goto-char end)
1432             (unless beg
1433               (if (looking-at "[\n\r]") (forward-char 1) (insert "\n")))
1434             (insert (concat
1435                      (if indent
1436                          (mapconcat
1437                           (lambda (el) " ")
1438                           (org-number-sequence 1 indent) "")
1439                        "")
1440                      "#+results"
1441                      (when hash (concat "["hash"]"))
1442                      ":"
1443                      (when name (concat " " name)) "\n"))
1444             (unless beg (insert "\n") (backward-char))
1445             (beginning-of-line 0)
1446             (if hash (org-babel-hide-hash))
1447             (point))
1448         found))))
1449
1450 (defvar org-block-regexp)
1451 (defun org-babel-read-result ()
1452   "Read the result at `point' into emacs-lisp."
1453   (let ((case-fold-search t) result-string)
1454     (cond
1455      ((org-at-table-p) (org-babel-read-table))
1456      ((org-at-item-p) (org-babel-read-list))
1457      ((looking-at org-bracket-link-regexp) (org-babel-read-link))
1458      ((looking-at org-block-regexp) (org-babel-trim (match-string 4)))
1459      ((looking-at "^[ \t]*: ")
1460       (setq result-string
1461             (org-babel-trim
1462              (mapconcat (lambda (line)
1463                           (if (and (> (length line) 1)
1464                                    (string-match "^[ \t]*: \\(.+\\)" line))
1465                               (match-string 1 line)
1466                             line))
1467                         (split-string
1468                          (buffer-substring
1469                           (point) (org-babel-result-end)) "[\r\n]+")
1470                         "\n")))
1471       (or (org-babel-number-p result-string) result-string))
1472      ((looking-at org-babel-result-regexp)
1473       (save-excursion (forward-line 1) (org-babel-read-result))))))
1474
1475 (defun org-babel-read-table ()
1476   "Read the table at `point' into emacs-lisp."
1477   (mapcar (lambda (row)
1478             (if (and (symbolp row) (equal row 'hline)) row
1479               (mapcar (lambda (el) (org-babel-read el 'inhibit-lisp-eval)) row)))
1480           (org-table-to-lisp)))
1481
1482 (defun org-babel-read-list ()
1483   "Read the list at `point' into emacs-lisp."
1484   (mapcar (lambda (el) (org-babel-read el 'inhibit-lisp-eval))
1485           (mapcar #'cadr (cdr (org-list-parse-list)))))
1486
1487 (defvar org-link-types-re)
1488 (defun org-babel-read-link ()
1489   "Read the link at `point' into emacs-lisp.
1490 If the path of the link is a file path it is expanded using
1491 `expand-file-name'."
1492   (let* ((case-fold-search t)
1493          (raw (and (looking-at org-bracket-link-regexp)
1494                    (org-babel-clean-text-properties (match-string 1))))
1495          (type (and (string-match org-link-types-re raw)
1496                     (match-string 1 raw))))
1497     (cond
1498      ((not type) (expand-file-name raw))
1499      ((string= type "file")
1500       (and (string-match "file\\(.*\\):\\(.+\\)" raw)
1501            (expand-file-name (match-string 2 raw))))
1502      (t raw))))
1503
1504 (defun org-babel-format-result (result &optional sep)
1505   "Format RESULT for writing to file."
1506   (flet ((echo-res (result)
1507                    (if (stringp result) result (format "%S" result))))
1508     (if (listp result)
1509         ;; table result
1510         (orgtbl-to-generic
1511          result
1512          (list
1513           :sep (or sep "\t")
1514           :fmt 'echo-res))
1515       ;; scalar result
1516       (echo-res result))))
1517
1518 (defun org-babel-insert-result
1519   (result &optional result-params info hash indent lang)
1520   "Insert RESULT into the current buffer.
1521 By default RESULT is inserted after the end of the
1522 current source block.  With optional argument RESULT-PARAMS
1523 controls insertion of results in the org-mode file.
1524 RESULT-PARAMS can take the following values...
1525
1526 replace - (default option) insert results after the source block
1527           replacing any previously inserted results
1528
1529 silent -- no results are inserted
1530
1531 file ---- the results are interpreted as a file path, and are
1532           inserted into the buffer using the Org-mode file syntax
1533
1534 list ---- the results are interpreted as an Org-mode list.
1535
1536 raw ----- results are added directly to the Org-mode file.  This
1537           is a good option if you code block will output org-mode
1538           formatted text.
1539
1540 org ----- similar in effect to raw, only the results are wrapped
1541           in an org code block.  Similar to the raw option, on
1542           export the results will be interpreted as org-formatted
1543           text, however by wrapping the results in an org code
1544           block they can be replaced upon re-execution of the
1545           code block.
1546
1547 html ---- results are added inside of a #+BEGIN_HTML block.  This
1548           is a good option if you code block will output html
1549           formatted text.
1550
1551 latex --- results are added inside of a #+BEGIN_LATEX block.
1552           This is a good option if you code block will output
1553           latex formatted text.
1554
1555 code ---- the results are extracted in the syntax of the source
1556           code of the language being evaluated and are added
1557           inside of a #+BEGIN_SRC block with the source-code
1558           language set appropriately.  Note this relies on the
1559           optional LANG argument."
1560   (if (stringp result)
1561       (progn
1562         (setq result (org-babel-clean-text-properties result))
1563         (when (member "file" result-params)
1564           (setq result (org-babel-result-to-file result))))
1565     (unless (listp result) (setq result (format "%S" result))))
1566   (if (and result-params (member "silent" result-params))
1567       (progn
1568         (message (replace-regexp-in-string "%" "%%" (format "%S" result)))
1569         result)
1570     (save-excursion
1571       (let* ((inlinep
1572               (save-excursion
1573                 (or (= (point) (point-at-bol))
1574                     (re-search-backward "[ \f\t\n\r\v]" nil t))
1575                 (when (or (looking-at org-babel-inline-src-block-regexp)
1576                           (looking-at org-babel-inline-lob-one-liner-regexp))
1577                   (goto-char (match-end 0))
1578                   (insert (if (listp result) "\n" " "))
1579                   (point))))
1580              (existing-result (unless inlinep
1581                                 (org-babel-where-is-src-block-result
1582                                  t info hash indent)))
1583              (results-switches
1584               (cdr (assoc :results_switches (nth 2 info))))
1585              beg end)
1586         (when (and (stringp result)  ; ensure results end in a newline
1587                    (not inlinep)
1588                    (> (length result) 0)
1589                    (not (or (string-equal (substring result -1) "\n")
1590                             (string-equal (substring result -1) "\r"))))
1591           (setq result (concat result "\n")))
1592         (if (not existing-result)
1593             (setq beg (or inlinep (point)))
1594           (goto-char existing-result)
1595           (save-excursion
1596             (re-search-forward "#" nil t)
1597             (setq indent (- (current-column) 1)))
1598           (forward-line 1)
1599           (setq beg (point))
1600           (cond
1601            ((member "replace" result-params)
1602             (delete-region (point) (org-babel-result-end)))
1603            ((member "append" result-params)
1604             (goto-char (org-babel-result-end)) (setq beg (point-marker)))
1605            ((member "prepend" result-params)))) ; already there
1606         (setq results-switches
1607               (if results-switches (concat " " results-switches) ""))
1608         ;; insert results based on type
1609         (cond
1610          ;; do nothing for an empty result
1611          ((= (length result) 0))
1612          ;; insert a list if preferred
1613          ((member "list" result-params)
1614           (insert
1615            (org-babel-trim
1616             (org-list-to-generic
1617              (cons 'unordered
1618                    (mapcar
1619                     (lambda (el) (list nil (if (stringp el) el (format "%S" el))))
1620                     (if (listp result) result (list result))))
1621              '(:splicep nil :istart "- " :iend "\n")))
1622            "\n"))
1623          ;; assume the result is a table if it's not a string
1624          ((not (stringp result))
1625           (goto-char beg)
1626           (insert (concat (orgtbl-to-orgtbl
1627                            (if (or (eq 'hline (car result))
1628                                    (and (listp (car result))
1629                                         (listp (cdr (car result)))))
1630                                result (list result))
1631                            '(:fmt (lambda (cell) (format "%s" cell)))) "\n"))
1632           (goto-char beg) (when (org-at-table-p) (org-table-align)))
1633          ((member "file" result-params)
1634           (insert result))
1635          (t (goto-char beg) (insert result)))
1636         (when (listp result) (goto-char (org-table-end)))
1637         (setq end (point-marker))
1638         ;; possibly wrap result
1639         (flet ((wrap (start finish)
1640                      (goto-char beg) (insert (concat start "\n"))
1641                      (goto-char end) (insert (concat finish "\n"))
1642                      (setq end (point-marker))))
1643           (cond
1644            ((member "html" result-params)
1645             (wrap "#+BEGIN_HTML" "#+END_HTML"))
1646            ((member "latex" result-params)
1647             (wrap "#+BEGIN_LaTeX" "#+END_LaTeX"))
1648            ((member "code" result-params)
1649             (wrap (format "#+BEGIN_SRC %s%s" (or lang "none") results-switches)
1650                   "#+END_SRC"))
1651            ((member "org" result-params)
1652             (wrap "#+BEGIN_ORG" "#+END_ORG"))
1653            ((member "raw" result-params)
1654             (goto-char beg) (if (org-at-table-p) (org-cycle)))
1655            ((member "wrap" result-params)
1656             (when (and (stringp result) (not (member "file" result-params)))
1657               (org-babel-examplize-region beg end results-switches))
1658             (wrap "#+BEGIN_RESULT" "#+END_RESULT"))
1659            ((and (stringp result) (not (member "file" result-params)))
1660             (org-babel-examplize-region beg end results-switches)
1661             (setq end (point)))))
1662         ;; possibly indent the results to match the #+results line
1663         (when (and (not inlinep) (numberp indent) indent (> indent 0)
1664                    ;; in this case `table-align' does the work for us
1665                    (not (and (listp result)
1666                              (member "append" result-params))))
1667           (indent-rigidly beg end indent))))
1668     (if (= (length result) 0)
1669         (if (member "value" result-params)
1670             (message "Code block returned no value.")
1671           (message "Code block produced no output."))
1672       (message "Code block evaluation complete."))))
1673
1674 (defun org-babel-remove-result (&optional info)
1675   "Remove the result of the current source block."
1676   (interactive)
1677   (let ((location (org-babel-where-is-src-block-result nil info)) start)
1678     (when location
1679       (save-excursion
1680         (goto-char location) (setq start (point)) (forward-line 1)
1681         (delete-region start (org-babel-result-end))))))
1682
1683 (defun org-babel-result-end ()
1684   "Return the point at the end of the current set of results"
1685   (save-excursion
1686     (cond
1687      ((org-at-table-p) (progn (goto-char (org-table-end)) (point)))
1688      ((org-at-item-p) (let* ((struct (org-list-struct))
1689                              (prvs (org-list-prevs-alist struct)))
1690                         (org-list-get-list-end (point-at-bol) struct prvs)))
1691      (t
1692       (let ((case-fold-search t)
1693             (blocks-re (regexp-opt
1694                         (list "latex" "html" "example" "src" "result" "org"))))
1695         (if (looking-at (concat "[ \t]*#\\+begin_" blocks-re))
1696             (progn (re-search-forward (concat "[ \t]*#\\+end_" blocks-re) nil t)
1697                    (forward-char 1))
1698           (while (looking-at "[ \t]*\\(: \\|\\[\\[\\)")
1699             (forward-line 1))))
1700       (point)))))
1701
1702 (defun org-babel-result-to-file (result)
1703   "Convert RESULT into an `org-mode' link.
1704 If the `default-directory' is different from the containing
1705 file's directory then expand relative links."
1706   (flet ((cond-exp (file)
1707           (if (and default-directory
1708                    buffer-file-name
1709                    (not (string= (expand-file-name default-directory)
1710                                  (expand-file-name
1711                                   (file-name-directory buffer-file-name)))))
1712               (expand-file-name file default-directory)
1713             file)))
1714     (if (stringp result)
1715         (format "[[file:%s]]" (cond-exp result))
1716       (when (and (listp result) (= 2 (length result))
1717                  (stringp (car result)) (stringp (cadr result)))
1718         (format "[[file:%s][%s]]" (car result) (cadr result))))))
1719
1720 (defun org-babel-examplize-region (beg end &optional results-switches)
1721   "Comment out region using the inline '==' or ': ' org example quote."
1722   (interactive "*r")
1723   (flet ((chars-between (b e) (string-match "[\\S]" (buffer-substring b e))))
1724     (if (or (chars-between (save-excursion (goto-char beg) (point-at-bol)) beg)
1725             (chars-between end (save-excursion (goto-char end) (point-at-eol))))
1726         (save-excursion
1727           (goto-char beg)
1728           (insert (format "=%s=" (prog1 (buffer-substring beg end)
1729                                    (delete-region beg end)))))
1730       (let ((size (count-lines beg end)))
1731         (save-excursion
1732           (cond ((= size 0))          ; do nothing for an empty result
1733                 ((< size org-babel-min-lines-for-block-output)
1734                  (goto-char beg)
1735                  (dotimes (n size)
1736                    (beginning-of-line 1) (insert ": ") (forward-line 1)))
1737                 (t
1738                  (goto-char beg)
1739                  (insert (if results-switches
1740                              (format "#+begin_example%s\n" results-switches)
1741                            "#+begin_example\n"))
1742                  (if (markerp end) (goto-char end) (forward-char (- end beg)))
1743                  (insert "#+end_example\n"))))))))
1744
1745 (defun org-babel-update-block-body (new-body)
1746   "Update the body of the current code block to NEW-BODY."
1747   (if (not (org-babel-where-is-src-block-head))
1748       (error "not in source block")
1749     (save-match-data
1750       (replace-match (concat (org-babel-trim new-body) "\n") nil t nil 5))
1751     (indent-rigidly (match-beginning 5) (match-end 5) 2)))
1752
1753 (defun org-babel-merge-params (&rest plists)
1754   "Combine all parameter association lists in PLISTS.
1755 Later elements of PLISTS override the values of previous elements.
1756 This takes into account some special considerations for certain
1757 parameters when merging lists."
1758   (let ((results-exclusive-groups
1759          '(("file" "list" "vector" "table" "scalar" "verbatim" "raw" "org"
1760             "html" "latex" "code" "pp" "wrap")
1761            ("replace" "silent" "append" "prepend")
1762            ("output" "value")))
1763         (exports-exclusive-groups
1764          '(("code" "results" "both" "none")))
1765         (variable-index 0)
1766         params results exports tangle noweb cache vars shebang comments padline)
1767     (flet ((e-merge (exclusive-groups &rest result-params)
1768              ;; maintain exclusivity of mutually exclusive parameters
1769              (let (output)
1770                (mapc (lambda (new-params)
1771                        (mapc (lambda (new-param)
1772                                (mapc (lambda (exclusive-group)
1773                                        (when (member new-param exclusive-group)
1774                                          (mapcar (lambda (excluded-param)
1775                                                    (setq output
1776                                                          (delete
1777                                                           excluded-param
1778                                                           output)))
1779                                                  exclusive-group)))
1780                                      exclusive-groups)
1781                                (setq output (org-uniquify
1782                                              (cons new-param output))))
1783                              new-params))
1784                      result-params)
1785                output)))
1786       (mapc
1787        (lambda (plist)
1788          (mapc
1789           (lambda (pair)
1790             (case (car pair)
1791               (:var
1792                (let ((name (if (listp (cdr pair))
1793                                (cadr pair)
1794                              (and (string-match "^\\([^= \f\t\n\r\v]+\\)[ \t]*="
1795                                                 (cdr pair))
1796                                   (intern (match-string 1 (cdr pair)))))))
1797                  (if name
1798                      (setq vars
1799                            (append
1800                             (if (member name (mapcar #'car vars))
1801                                 (delq nil
1802                                       (mapcar
1803                                        (lambda (p)
1804                                          (unless (equal (car p) name) p))
1805                                        vars))
1806                               vars)
1807                             (list (cons name pair))))
1808                    ;; if no name is given, then assign to variables in order
1809                    (prog1 (setf (cddr (nth variable-index vars))
1810                                 (concat (symbol-name
1811                                          (car (nth variable-index vars)))
1812                                         "=" (cdr pair)))
1813                      (incf variable-index)))))
1814               (:results
1815                (setq results (e-merge results-exclusive-groups
1816                                       results
1817                                       (split-string
1818                                        (let ((r (cdr pair)))
1819                                          (if (stringp r) r (eval r)))))))
1820               (:file
1821                (when (cdr pair)
1822                  (setq results (e-merge results-exclusive-groups
1823                                         results '("file")))
1824                  (unless (or (member "both" exports)
1825                              (member "none" exports)
1826                              (member "code" exports))
1827                    (setq exports (e-merge exports-exclusive-groups
1828                                           exports '("results"))))
1829                  (setq params (cons pair (assq-delete-all (car pair) params)))))
1830               (:exports
1831                (setq exports (e-merge exports-exclusive-groups
1832                                       exports (split-string (cdr pair)))))
1833               (:tangle ;; take the latest -- always overwrite
1834                (setq tangle (or (list (cdr pair)) tangle)))
1835               (:noweb
1836                (setq noweb (e-merge '(("yes" "no" "tangle")) noweb
1837                                     (split-string (or (cdr pair) "")))))
1838               (:cache
1839                (setq cache (e-merge '(("yes" "no")) cache
1840                                     (split-string (or (cdr pair) "")))))
1841               (:padline
1842                (setq padline (e-merge '(("yes" "no")) padline
1843                                       (split-string (or (cdr pair) "")))))
1844               (:shebang ;; take the latest -- always overwrite
1845                (setq shebang (or (list (cdr pair)) shebang)))
1846               (:comments
1847                (setq comments (e-merge '(("yes" "no")) comments
1848                                        (split-string (or (cdr pair) "")))))
1849               (t ;; replace: this covers e.g. :session
1850                (setq params (cons pair (assq-delete-all (car pair) params))))))
1851           plist))
1852        plists))
1853     (setq vars (reverse vars))
1854     (while vars (setq params (cons (cons :var (cddr (pop vars))) params)))
1855     (mapc
1856      (lambda (hd)
1857        (let ((key (intern (concat ":" (symbol-name hd))))
1858              (val (eval hd)))
1859          (setf params (cons (cons key (mapconcat 'identity val " ")) params))))
1860      '(results exports tangle noweb padline cache shebang comments))
1861     params))
1862
1863 (defun org-babel-expand-noweb-references (&optional info parent-buffer)
1864   "Expand Noweb references in the body of the current source code block.
1865
1866 For example the following reference would be replaced with the
1867 body of the source-code block named 'example-block'.
1868
1869 <<example-block>>
1870
1871 Note that any text preceding the <<foo>> construct on a line will
1872 be interposed between the lines of the replacement text.  So for
1873 example if <<foo>> is placed behind a comment, then the entire
1874 replacement text will also be commented.
1875
1876 This function must be called from inside of the buffer containing
1877 the source-code block which holds BODY.
1878
1879 In addition the following syntax can be used to insert the
1880 results of evaluating the source-code block named 'example-block'.
1881
1882 <<example-block()>>
1883
1884 Any optional arguments can be passed to example-block by placing
1885 the arguments inside the parenthesis following the convention
1886 defined by `org-babel-lob'.  For example
1887
1888 <<example-block(a=9)>>
1889
1890 would set the value of argument \"a\" equal to \"9\".  Note that
1891 these arguments are not evaluated in the current source-code
1892 block but are passed literally to the \"example-block\"."
1893   (let* ((parent-buffer (or parent-buffer (current-buffer)))
1894          (info (or info (org-babel-get-src-block-info)))
1895          (lang (nth 0 info))
1896          (body (nth 1 info))
1897          (comment (string= "noweb" (cdr (assoc :comments (nth 2 info)))))
1898          (new-body "") index source-name evaluate prefix blocks-in-buffer)
1899     (flet ((nb-add (text) (setq new-body (concat new-body text)))
1900            (c-wrap (text)
1901                    (with-temp-buffer
1902                      (funcall (intern (concat lang "-mode")))
1903                      (comment-region (point) (progn (insert text) (point)))
1904                      (org-babel-trim (buffer-string))))
1905            (blocks () ;; return the info lists of all blocks in this buffer
1906                    (let (infos)
1907                      (save-restriction
1908                        (widen)
1909                        (org-babel-map-src-blocks nil
1910                          (setq infos (cons (org-babel-get-src-block-info 'light)
1911                                            infos))))
1912                      (reverse infos))))
1913       (with-temp-buffer
1914         (insert body) (goto-char (point-min))
1915         (setq index (point))
1916         (while (and (re-search-forward "<<\\(.+?\\)>>" nil t))
1917           (save-match-data (setf source-name (match-string 1)))
1918           (save-match-data (setq evaluate (string-match "\(.*\)" source-name)))
1919           (save-match-data
1920             (setq prefix
1921                   (buffer-substring (match-beginning 0)
1922                                     (save-excursion
1923                                       (beginning-of-line 1) (point)))))
1924           ;; add interval to new-body (removing noweb reference)
1925           (goto-char (match-beginning 0))
1926           (nb-add (buffer-substring index (point)))
1927           (goto-char (match-end 0))
1928           (setq index (point))
1929           (nb-add
1930            (with-current-buffer parent-buffer
1931              (mapconcat ;; interpose PREFIX between every line
1932               #'identity
1933               (split-string
1934                (if evaluate
1935                    (let ((raw (org-babel-ref-resolve source-name)))
1936                      (if (stringp raw) raw (format "%S" raw)))
1937                  (or
1938                   ;; retrieve from the library of babel
1939                   (nth 2 (assoc (intern source-name)
1940                                 org-babel-library-of-babel))
1941                   ;; return the contents of headlines literally
1942                   (save-excursion
1943                     (when (org-babel-ref-goto-headline-id source-name)
1944                       (org-babel-ref-headline-body)))
1945                   ;; find the expansion of reference in this buffer
1946                   (mapconcat
1947                    (lambda (i)
1948                      (when (string= source-name
1949                                     (or (cdr (assoc :noweb-ref (nth 2 i)))
1950                                         (nth 4 i)))
1951                        (let ((body (org-babel-expand-noweb-references i)))
1952                          (if comment
1953                              ((lambda (cs)
1954                                 (concat (c-wrap (car cs)) "\n"
1955                                         body "\n" (c-wrap (cadr cs))))
1956                               (org-babel-tangle-comment-links i))
1957                            body))))
1958                    (or blocks-in-buffer
1959                        (setq blocks-in-buffer (blocks)))
1960                    "")
1961                   ;; possibly raise an error if named block doesn't exist
1962                   (if (member lang org-babel-noweb-error-langs)
1963                       (error "%s" (concat
1964                                    "<<" source-name ">> "
1965                                    "could not be resolved (see "
1966                                    "`org-babel-noweb-error-langs')"))
1967                     "")))
1968                "[\n\r]") (concat "\n" prefix)))))
1969         (nb-add (buffer-substring index (point-max)))))
1970     new-body))
1971
1972 (defun org-babel-clean-text-properties (text)
1973   "Strip all properties from text return."
1974   (when text
1975     (set-text-properties 0 (length text) nil text) text))
1976
1977 (defun org-babel-strip-protective-commas (body)
1978   "Strip protective commas from bodies of source blocks."
1979   (when body
1980     (replace-regexp-in-string "^,#" "#" body)))
1981
1982 (defun org-babel-script-escape (str &optional force)
1983   "Safely convert tables into elisp lists."
1984   (let (in-single in-double out)
1985     ((lambda (escaped) (condition-case nil (org-babel-read escaped) (error escaped)))
1986      (if (or force
1987              (and (stringp str)
1988                   (> (length str) 2)
1989                   (or (and (string-equal "[" (substring str 0 1))
1990                            (string-equal "]" (substring str -1)))
1991                       (and (string-equal "{" (substring str 0 1))
1992                            (string-equal "}" (substring str -1)))
1993                       (and (string-equal "(" (substring str 0 1))
1994                            (string-equal ")" (substring str -1))))))
1995          (org-babel-read
1996           (concat
1997            "'"
1998            (progn
1999              (mapc
2000               (lambda (ch)
2001                 (setq
2002                  out
2003                  (case ch
2004                    (91 (if (or in-double in-single) ; [
2005                            (cons 91 out)
2006                          (cons 40 out)))
2007                    (93 (if (or in-double in-single) ; ]
2008                            (cons 93 out)
2009                          (cons 41 out)))
2010                    (123 (if (or in-double in-single) ; {
2011                             (cons 123 out)
2012                           (cons 40 out)))
2013                    (125 (if (or in-double in-single) ; }
2014                             (cons 125 out)
2015                           (cons 41 out)))
2016                    (44 (if (or in-double in-single) ; ,
2017                            (cons 44 out) (cons 32 out)))
2018                    (39 (if in-double    ; '
2019                            (cons 39 out)
2020                          (setq in-single (not in-single)) (cons 34 out)))
2021                    (34 (if in-single    ; "
2022                            (append (list 34 32) out)
2023                          (setq in-double (not in-double)) (cons 34 out)))
2024                    (t  (cons ch out)))))
2025               (string-to-list str))
2026              (apply #'string (reverse out)))))
2027        str))))
2028
2029 (defun org-babel-read (cell &optional inhibit-lisp-eval)
2030   "Convert the string value of CELL to a number if appropriate.
2031 Otherwise if cell looks like lisp (meaning it starts with a
2032 \"(\", \"'\", \"`\" or a \"[\") then read it as lisp, otherwise
2033 return it unmodified as a string.  Optional argument NO-LISP-EVAL
2034 inhibits lisp evaluation for situations in which is it not
2035 appropriate."
2036   (if (and (stringp cell) (not (equal cell "")))
2037       (or (org-babel-number-p cell)
2038           (if (and (not inhibit-lisp-eval)
2039                    (member (substring cell 0 1) '("(" "'" "`" "[")))
2040               (eval (read cell))
2041             (if (string= (substring cell 0 1) "\"")
2042                 (read cell)
2043               (progn (set-text-properties 0 (length cell) nil cell) cell))))
2044     cell))
2045
2046 (defun org-babel-number-p (string)
2047   "If STRING represents a number return it's value."
2048   (if (and (string-match "^-?[0-9]*\\.?[0-9]*$" string)
2049            (= (length (substring string (match-beginning 0)
2050                                  (match-end 0)))
2051               (length string)))
2052       (string-to-number string)))
2053
2054 (defun org-babel-import-elisp-from-file (file-name &optional separator)
2055   "Read the results located at FILE-NAME into an elisp table.
2056 If the table is trivial, then return it as a scalar."
2057   (let (result)
2058     (save-window-excursion
2059       (with-temp-buffer
2060         (condition-case nil
2061             (progn
2062               (org-table-import file-name separator)
2063               (delete-file file-name)
2064               (setq result (mapcar (lambda (row)
2065                                      (mapcar #'org-babel-string-read row))
2066                                    (org-table-to-lisp))))
2067           (error nil)))
2068       (if (null (cdr result)) ;; if result is trivial vector, then scalarize it
2069           (if (consp (car result))
2070               (if (null (cdr (car result)))
2071                   (caar result)
2072                 result)
2073             (car result))
2074         result))))
2075
2076 (defun org-babel-string-read (cell)
2077   "Strip nested \"s from around strings."
2078   (org-babel-read (or (and (stringp cell)
2079                            (string-match "\\\"\\(.+\\)\\\"" cell)
2080                            (match-string 1 cell))
2081                       cell)))
2082
2083 (defun org-babel-reverse-string (string)
2084   "Return the reverse of STRING."
2085   (apply 'string (reverse (string-to-list string))))
2086
2087 (defun org-babel-chomp (string &optional regexp)
2088   "Strip trailing spaces and carriage returns from STRING.
2089 Default regexp used is \"[ \f\t\n\r\v]\" but can be
2090 overwritten by specifying a regexp as a second argument."
2091   (let ((regexp (or regexp "[ \f\t\n\r\v]")))
2092     (while (and (> (length string) 0)
2093                 (string-match regexp (substring string -1)))
2094       (setq string (substring string 0 -1)))
2095     string))
2096
2097 (defun org-babel-trim (string &optional regexp)
2098   "Strip leading and trailing spaces and carriage returns from STRING.
2099 Like `org-babel-chomp' only it runs on both the front and back
2100 of the string."
2101   (org-babel-chomp (org-babel-reverse-string
2102                     (org-babel-chomp (org-babel-reverse-string string) regexp))
2103                    regexp))
2104
2105 (defvar org-babel-org-babel-call-process-region-original nil)
2106 (defun org-babel-tramp-handle-call-process-region
2107   (start end program &optional delete buffer display &rest args)
2108   "Use tramp to handle call-process-region.
2109 Fixes a bug in `tramp-handle-call-process-region'."
2110   (if (and (featurep 'tramp) (file-remote-p default-directory))
2111       (let ((tmpfile (tramp-compat-make-temp-file "")))
2112         (write-region start end tmpfile)
2113         (when delete (delete-region start end))
2114         (unwind-protect
2115             ;;  (apply 'call-process program tmpfile buffer display args)
2116             ;; bug in tramp
2117             (apply 'process-file program tmpfile buffer display args)
2118           (delete-file tmpfile)))
2119     ;; org-babel-call-process-region-original is the original emacs
2120     ;; definition. It is in scope from the let binding in
2121     ;; org-babel-execute-src-block
2122     (apply org-babel-call-process-region-original
2123            start end program delete buffer display args)))
2124
2125 (defun org-babel-local-file-name (file)
2126   "Return the local name component of FILE."
2127   (if (file-remote-p file)
2128       (let (localname)
2129         (with-parsed-tramp-file-name file nil
2130           localname))
2131     file))
2132
2133 (defun org-babel-process-file-name (name &optional no-quote-p)
2134   "Prepare NAME to be used in an external process.
2135 If NAME specifies a remote location, the remote portion of the
2136 name is removed, since in that case the process will be executing
2137 remotely. The file name is then processed by
2138 `expand-file-name'. Unless second argument NO-QUOTE-P is non-nil,
2139 the file name is additionally processed by
2140 `shell-quote-argument'"
2141   ((lambda (f) (if no-quote-p f (shell-quote-argument f)))
2142    (expand-file-name (org-babel-local-file-name name))))
2143
2144 (defvar org-babel-temporary-directory)
2145 (unless (or noninteractive (boundp 'org-babel-temporary-directory))
2146   (defvar org-babel-temporary-directory
2147     (or (and (boundp 'org-babel-temporary-directory)
2148              (file-exists-p org-babel-temporary-directory)
2149              org-babel-temporary-directory)
2150         (make-temp-file "babel-" t))
2151     "Directory to hold temporary files created to execute code blocks.
2152 Used by `org-babel-temp-file'.  This directory will be removed on
2153 Emacs shutdown."))
2154
2155 (defun org-babel-temp-file (prefix &optional suffix)
2156   "Create a temporary file in the `org-babel-temporary-directory'.
2157 Passes PREFIX and SUFFIX directly to `make-temp-file' with the
2158 value of `temporary-file-directory' temporarily set to the value
2159 of `org-babel-temporary-directory'."
2160   (if (file-remote-p default-directory)
2161       (make-temp-file
2162        (concat (file-remote-p default-directory)
2163                (expand-file-name
2164                 prefix temporary-file-directory)
2165                nil suffix))
2166     (let ((temporary-file-directory
2167            (or (and (boundp 'org-babel-temporary-directory)
2168                     (file-exists-p org-babel-temporary-directory)
2169                     org-babel-temporary-directory)
2170                temporary-file-directory)))
2171       (make-temp-file prefix nil suffix))))
2172
2173 (defun org-babel-remove-temporary-directory ()
2174   "Remove `org-babel-temporary-directory' on Emacs shutdown."
2175   (when (and (boundp 'org-babel-temporary-directory)
2176              (file-exists-p org-babel-temporary-directory))
2177     ;; taken from `delete-directory' in files.el
2178     (condition-case nil
2179         (progn
2180           (mapc (lambda (file)
2181                   ;; This test is equivalent to
2182                   ;; (and (file-directory-p fn) (not (file-symlink-p fn)))
2183                   ;; but more efficient
2184                   (if (eq t (car (file-attributes file)))
2185                       (delete-directory file)
2186                     (delete-file file)))
2187                 ;; We do not want to delete "." and "..".
2188                 (directory-files org-babel-temporary-directory 'full
2189                                  "^\\([^.]\\|\\.\\([^.]\\|\\..\\)\\).*"))
2190           (delete-directory org-babel-temporary-directory))
2191       (error
2192        (message "Failed to remove temporary Org-babel directory %s"
2193                 (if (boundp 'org-babel-temporary-directory)
2194                     org-babel-temporary-directory
2195                   "[directory not defined]"))))))
2196
2197 (add-hook 'kill-emacs-hook 'org-babel-remove-temporary-directory)
2198
2199 (provide 'ob)
2200
2201 ;; arch-tag: 01a7ebee-06c5-4ee4-a709-e660d28c0af1
2202
2203 ;;; ob.el ends here