Added documentation about proper use of pdb2gmx -ter.
[gromacs/rigid-bodies.git] / include / selvalue.h
blob8460fe89a34490ea9f3e9841fef2755bc707d0b9
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31 /*! \file
32 * \brief Declaration of \c gmx_ana_selvalue_t.
34 * There should be no need to use the data structures in this file directly
35 * unless implementing a custom selection routine.
37 #ifndef SELVALUE_H
38 #define SELVALUE_H
40 #include "types/simple.h"
42 #ifdef __cplusplus
43 extern "C"
45 #endif
47 /** Defines the value type of a different selection objects. */
48 typedef enum
50 NO_VALUE, /**< No value; either an error condition or an gmx_boolean
51 parameter. */
52 INT_VALUE, /**< One or more integer values. */
53 REAL_VALUE, /**< One or more real values. */
54 STR_VALUE, /**< One or more string values. */
55 POS_VALUE, /**< One or more position values. */
56 GROUP_VALUE /**< One group of atoms. */
57 } e_selvalue_t;
59 /*! \brief
60 * Describes a value of a selection expression or of a selection method
61 * parameter.
63 * Which field in the union is used depends on the \p type.
65 typedef struct gmx_ana_selvalue_t
67 /** Type of the value. */
68 e_selvalue_t type;
69 /*! \brief
70 * Number of values in the array pointed by the union.
72 * Note that for position and group values, it is the number of
73 * data structures in the array, not the number of positions or
74 * the number of atoms in the group.
76 int nr;
77 /** Pointer to the value. */
78 union {
79 /*! \brief
80 * Generic pointer for operations that do not need type information.
82 * Needs to be the first member to be able to use initialized arrays.
84 void *ptr;
85 /** Integer value(s) (type \ref INT_VALUE). */
86 int *i;
87 /** Real value(s) (type \ref REAL_VALUE). */
88 real *r;
89 /** String value(s) (type \ref STR_VALUE). */
90 char **s;
91 /** Structure for the position value(s) (type \ref POS_VALUE). */
92 struct gmx_ana_pos_t *p;
93 /** Group value (type \ref GROUP_VALUE). */
94 struct gmx_ana_index_t *g;
95 /** Boolean value (only parameters of type \ref NO_VALUE); */
96 gmx_bool *b;
97 } u;
98 /*! \brief
99 * Number of elements allocated for the value array.
101 int nalloc;
102 } gmx_ana_selvalue_t;
104 /** Initializes an empty selection value structure. */
105 void
106 _gmx_selvalue_clear(gmx_ana_selvalue_t *val);
107 /** Reserve memory for storing selection values. */
109 _gmx_selvalue_reserve(gmx_ana_selvalue_t *val, int n);
110 /** Sets the memory for storing selection values. */
112 _gmx_selvalue_setstore(gmx_ana_selvalue_t *val, void *ptr);
113 /** Sets the memory for storing selection values and marks it for automatic freeing. */
115 _gmx_selvalue_setstore_alloc(gmx_ana_selvalue_t *val, void *ptr, int nalloc);
117 #ifdef __cplusplus
119 #endif
121 #endif