Enforced rotation: made fit type controllable by mdp option, reduced number of output...
[gromacs/adressmacs.git] / include / renum.h
blob9ac40d84fd7a26a9f882d0833122c49ffc8d7629
1 /*
2 *
3 * This source code is part of
4 *
5 * G R O M A C S
6 *
7 * GROningen MAchine for Chemical Simulations
8 *
9 * VERSION 3.2.0
10 * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
11 * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
12 * Copyright (c) 2001-2004, The GROMACS development team,
13 * check out http://www.gromacs.org for more information.
15 * This program is free software; you can redistribute it and/or
16 * modify it under the terms of the GNU General Public License
17 * as published by the Free Software Foundation; either version 2
18 * of the License, or (at your option) any later version.
20 * If you want to redistribute modifications, please consider that
21 * scientific software is very special. Version control is crucial -
22 * bugs must be traceable. We will be happy to consider code for
23 * inclusion in the official distribution, but derived work must not
24 * be called official GROMACS. Details are found in the README & COPYING
25 * files - if they are missing, get the official version at www.gromacs.org.
27 * To help us fund GROMACS development, we humbly ask that you cite
28 * the papers on the package - you can find them in the top README file.
30 * For more info, check our website at http://www.gromacs.org
32 * And Hey:
33 * Gromacs Runs On Most of All Computer Systems
36 #ifndef _renum_h
37 #define _renum_h
39 #ifdef HAVE_CONFIG_H
40 #include <config.h>
41 #endif
44 #include "typedefs.h"
46 extern void renum_params(t_topology *top,int renum[]);
48 * The atom id's in the parameters for the bonded forces will be
49 * renumbered according to the order specified in renum.
51 * renum[i]=j specifies that atom i will be at postion j after
52 * renum_params.
55 extern void renumber_top(t_topology *top,rvec *x,rvec *v,rvec *f,int renum[]);
57 * All atoms in the topology top will be renumbered according to the order
58 * specified in renum. The vector array's x,v & f will also be renumbered.
60 * renum[i]=j specifies that atom i will be at postion j after
61 * renumber_top.
64 #endif /* _renum_h */