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drwxr-xr-x		..
-rw-r--r--	2030	CMakeLists.txt	blob \| blame \| history \| raw
-rw-r--r--	3523	integrator.cpp	blob \| blame \| history \| raw
-rw-r--r--	7578	integrator.h	blob \| blame \| history \| raw
-rw-r--r--	8294	legacymdrunoptions.cpp	blob \| blame \| history \| raw
-rw-r--r--	15628	legacymdrunoptions.h	blob \| blame \| history \| raw
-rw-r--r--	4491	logging.cpp	blob \| blame \| history \| raw
-rw-r--r--	2651	logging.h	blob \| blame \| history \| raw
-rw-r--r--	66297	md.cpp	blob \| blame \| history \| raw
-rw-r--r--	2067	md.h	blob \| blame \| history \| raw
-rw-r--r--	24944	mimic.cpp	blob \| blame \| history \| raw
-rw-r--r--	2033	mimic.h	blob \| blame \| history \| raw
-rw-r--r--	103529	minimize.cpp	blob \| blame \| history \| raw
-rw-r--r--	2014	minimize.h	blob \| blame \| history \| raw
-rw-r--r--	4727	multisim.cpp	blob \| blame \| history \| raw
-rw-r--r--	2496	multisim.h	blob \| blame \| history \| raw
-rw-r--r--	45496	replicaexchange.cpp	blob \| blame \| history \| raw
-rw-r--r--	4178	replicaexchange.h	blob \| blame \| history \| raw
-rw-r--r--	30172	rerun.cpp	blob \| blame \| history \| raw
-rw-r--r--	2037	rerun.h	blob \| blame \| history \| raw
-rw-r--r--	71787	runner.cpp	blob \| blame \| history \| raw
-rw-r--r--	24511	runner.h	blob \| blame \| history \| raw
-rw-r--r--	2792	simulationcontext.cpp	blob \| blame \| history \| raw
-rw-r--r--	5981	simulationcontext.h	blob \| blame \| history \| raw
-rw-r--r--	31061	tpi.cpp	blob \| blame \| history \| raw
-rw-r--r--	2020	tpi.h	blob \| blame \| history \| raw