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Fix clang tidy warnings in CUDA build
2019-08-23
Sz
i
lárd Páll
Fix c
l
ang tidy warnings in C
U
D
A build
commit
|
commitdiff
|
tree
2019-08-19
Szilárd Páll
Bu
m
p clang-cud
a
pos
t
-submit compi
l
er/CU
D
A version
commit
|
commitdiff
|
tree
2019-08-19
Szil
á
r
d Páll
Swit
c
h
t
o
A
RM HPC toolchain v19
.
2 in post-submit
commit
|
commitdiff
|
tree
2019-08-19
Szilárd Páll
Wo
r
k
around clan
g
CUDA device c
o
d
e codegen bug
commit
|
commitdiff
|
tree
2019-08-16
S
zi
l
árd Páll
Fix sim_util
.
cpp copyr
i
ght head
e
r
commit
|
commitdiff
|
tree
2019-08-15
S
zilárd
Páll
Fix Open
C
L gathe
r
reduction
commit
|
commitdiff
|
tree
2019-08-12
Szil
á
r
d
Páll
Fix h
w
l
o
c find
p
a
c
k
age
n
aming and quietness issues
commit
|
commitdiff
|
tree
2019-07-31
Szil
á
rd Páll
Store wcycle pointer in nonbonded_ve
r
let_t
commit
|
commitdiff
|
tree
2019-07-31
S
z
ilár
d
Pá
l
l
Fixes
f
or F buffer ops change
commit
|
commitdiff
|
tree
2019-07-31
Szilárd Páll
M
o
ve cycle countin
g
into the
GPU
b
onded module
commit
|
commitdiff
|
tree
2019-07-31
Szilárd Páll
Repo
r
t wh
e
n development fe
a
ture flags are
u
sed
commit
|
commitdiff
|
tree
2019-07-31
S
zil
á
rd Páll
M
o
ve
end of step GPU task launche
s
to a
f
unction
commit
|
commitdiff
|
tree
2019-07-25
Szilá
r
d
P
áll
Only stop
t
h
e
C
U
D
A pr
o
filer if th
e
r
e
are devices
commit
|
commitdiff
|
tree
2019-07-22
Szilárd Páll
Co
n
di
t
ionally pin GP
U
-related grid
d
a
ta
commit
|
commitdiff
|
tree
2019-07-11
Szilárd Páll
Us
e
HostVector f
o
r
G
rid/Gr
i
dSet data
need on-GP
U
commit
|
commitdiff
|
tree
2019-07-08
Szilárd Páll
Eliminate a use of
d
o
u
ble preci
s
ion in the GPU bonded
.
.
.
commit
|
commitdiff
|
tree
2019-07-04
S
zilá
r
d Páll
Bump latest CUDA + gcc in th
e
pre-submit
m
atrix
commit
|
commitdiff
|
tree
2019-07-04
Szil
á
rd
Páll
Fix
a
-Wformat-tru
n
cation
warn
i
ng in
tng
commit
|
commitdiff
|
tree
2019-07-01
Szilárd Pá
l
l
Refact
o
r tracking
of GPU sho
r
t-
r
ange w
o
r
k
/skipping
commit
|
commitdiff
|
tree
2019-06-30
Szilárd Páll
Create d
e
dic
a
ted subcounter for
n
o
nbonded FEP
commit
|
commitdiff
|
tree
2019-06-28
S
zil
á
rd
P
áll
Separate CP
U
NB ke
r
nel and
buffer
cleari
n
g subcounters
commit
|
commitdiff
|
tree
2019-06-27
Szilárd Páll
Remove already resolved post-submi
t
m
a
trix TODO
commit
|
commitdiff
|
tree
2019-06-24
Szilár
d
Páll
Onl
y
u
s
e
A
V
X512 in own
-
FFTW
if GROMA
C
S
a
l
so
u
ses it
commit
|
commitdiff
|
tree
2019-06-19
Szilárd Páll
Disable PME GPU on
Apple Op
e
nC
L
commit
|
commitdiff
|
tree
2019-05-29
Szi
l
árd Pál
l
Template x b
u
f
f
er ops call on whether
GP
U
is us
e
d
commit
|
commitdiff
|
tree
2019-05-23
S
zilárd Páll
Fix
mu
l
itpl
e
link refs in dev-manual
commit
|
commitdiff
|
tree
2019-05-20
S
z
ilár
d
Páll
Impr
o
ve X b
u
ffer ops
k
ernel
commit
|
commitdiff
|
tree
2019-04-25
Sz
i
l
árd Pá
l
l
Fix clang warning about NULL use
commit
|
commitdiff
|
tree
2019-04-25
Szilárd Pá
l
l
Av
o
id us
i
ng AtomLocalit
y
::Count as a valid va
l
u
e
commit
|
commitdiff
|
tree
2019-04-24
Szi
l
árd
P
ál
l
Fix CUDA fallback
sh
m
em gather reduction
commit
|
commitdiff
|
tree
2019-04-18
Szilárd Pál
l
Fix
w
arnings & con
s
olidate declarations
commit
|
commitdiff
|
tree
2019-04-16
Szilárd Páll
Move func
t
ions operating on enerdata
out of fo
r
ce
.
cpp
commit
|
commitdiff
|
tree
2019-04-16
S
z
ilárd Pál
l
Remove "
c
o
a
r
se lo
a
d balancing va
r
s"
f
rom forcerec
commit
|
commitdiff
|
tree
2019-04-16
Sz
i
lárd Páll
Group scheme related cl
e
anup
commit
|
commitdiff
|
tree
2019-04-16
Szilárd Páll
Remove Group
s
c
h
eme n
e
ighbor se
a
rch wrappe
r
commit
|
commitdiff
|
tree
2019-04-15
Szilárd
P
áll
Add
u
ser gui
d
e note on AVX512 thro
t
t
l
e i
n
GP
U
r
uns
commit
|
commitdiff
|
tree
2019-04-05
Szilárd Páll
Revert "Temporar
i
l
y disable A
R
M
H
P
C comp
i
ler in p
o
st
.
.
.
commit
|
commitdiff
|
tree
2019-04-05
Szilárd Páll
Revert
"Temporar
i
l
y
disable ARM HPC compiler
in po
s
t
.
.
.
commit
|
commitdiff
|
tree
2019-04-02
Sz
i
lárd Pá
l
l
T
e
mporari
l
y disable ARM H
P
C
compiler in
p
o
s
t-subm
i
t
commit
|
commitdiff
|
tree
2019-04-02
Szilárd Páll
Tempora
r
ily disable ARM
H
P
C compi
l
er
in
post
-
submit
commit
|
commitdiff
|
tree
2019-03-28
Szil
á
r
d
Páll
B
e
t
t
er
d
ocument GMX_OPENMP_MAX_THREADS
commit
|
commitdiff
|
tree
2019-03-26
Szi
l
á
r
d
P
áll
Skip PBC calcu
l
ation when there
a
re no listed forces
commit
|
commitdiff
|
tree
2019-03-26
Szi
l
ár
d
Pá
l
l
do_
f
orce_cutsVERLET
cleanup
commit
|
commitdiff
|
tree
2019-03-21
S
zilárd Páll
Reorder
P
B
C setup in do_force_lowlevel
commit
|
commitdiff
|
tree
2019-03-13
Szilárd Páll
R
e
or
g
anize search-time
cod
e
in do_fo
r
ce_c
u
tsVERLET
commit
|
commitdiff
|
tree
2019-03-13
Szilárd Páll
Add haveGpuBondedWork flag to
PpForceWorkloa
d
commit
|
commitdiff
|
tree
2019-03-13
Szilárd
Pá
l
l
S
t
art
mo
d
u
larizing force work
l
oad setup
commit
|
commitdiff
|
tree
2019-03-05
Szilár
d
Páll
Relax OpenCL
g
ath
e
r ker
n
el bar
r
ier on
A
M
D
commit
|
commitdiff
|
tree
2019-03-02
Szilárd Páll
Encapsulate
f
orce ou
t
put setup in do_force_*
commit
|
commitdiff
|
tree
2019-03-01
Szilárd Páll
Clarify for
c
e buffer setup code in do_f
o
rce
commit
|
commitdiff
|
tree
2019-02-19
S
zilárd
Pál
l
Disable instruction fusion on Power
8
commit
|
commitdiff
|
tree
2019-02-17
Szilárd Páll
Improve GPU target
c
ompatibility error message
commit
|
commitdiff
|
tree
2019-02-15
Szilárd Páll
E
xtend G
p
uEve
n
tSynchronizer to
a
l
lo
w
o
n
-d
e
v
ice
sync
commit
|
commitdiff
|
tree
2019-02-15
Szil
á
rd Páll
Extend pe
r
f
ormance
c
o
n
s
i
d
e
r
ations
on bonded offload
commit
|
commitdiff
|
tree
2019-02-13
Szilárd Páll
Disable instruction f
u
sion on Powe
r
8
commit
|
commitdiff
|
tree
2019-02-13
Szilárd
Páll
Minor re
f
actor
i
ng i
n
mdrunnner
commit
|
commitdiff
|
tree
2019-02-12
Szilá
r
d Páll
M
ino
r
re
f
actor
o
f
gpuid
/
t
ask mapping parsing
commit
|
commitdiff
|
tree
2019-02-07
Szilárd Páll
Requir
e
a 64-bit platform for O
p
enCL
commit
|
commitdiff
|
tree
2019-01-30
Szil
á
r
d
P
á
l
l
Fix doub
l
e-increment o
f
G
P
U NB launch subcounter
commit
|
commitdiff
|
tree
2019-01-21
S
zi
l
á
r
d P
á
ll
Add C
U
DA CC
7
.
5
(
Turing) support with nvcc
commit
|
commitdiff
|
tree
2019-01-04
S
z
i
lá
r
d Páll
Fix formatti
n
g war
n
in
g
commit
|
commitdiff
|
tree
2019-01-02
Szilárd Páll
Fix clang 6 wa
r
ning
commit
|
commitdiff
|
tree
2019-01-02
Szil
á
rd
P
áll
Do not whiteli
s
t the
use
of Op
e
nCL 1
.
1 API
commit
|
commitdiff
|
tree
2018-12-31
Szilár
d
Páll
Fix release n
o
te
s
typo
commit
|
commitdiff
|
tree
2018-12-31
Szilárd Pá
l
l
A
dd C
U
DA
C
C 7
.
5 (Tur
i
ng) supp
o
rt with nvcc
commit
|
commitdiff
|
tree
2018-12-27
Szilárd Pá
l
l
Use s
t
d::s
w
ap in LINCS
commit
|
commitdiff
|
tree
2018-12-22
S
zilár
d
P
á
l
l
R
u
n
t
i
m
e check
o
f
device OpenCL
s
upport
commit
|
commitdiff
|
tree
2018-12-21
Szilárd Páll
Make jenkin
s
own-f
f
tw verify use lo
c
al
t
arball
commit
|
commitdiff
|
tree
2018-12-20
Szilárd Páll
Fix CUDA co
m
piled t
a
r
get-device comp
a
tibi
l
i
t
y
check
commit
|
commitdiff
|
tree
2018-12-20
Szilár
d
Páll
Correct C
U
D
A
compatibility check
commit
|
commitdiff
|
tree
2018-12-20
Szilár
d
Páll
M
e
rge "Merge branch rel
e
as
e
-
2018 into rel
e
ase-2019
.
.
.
commit
|
commitdiff
|
tree
2018-12-18
Szilárd
P
áll
M
e
rge r
e
lease-2
0
1
9 b
r
an
c
h into ma
s
ter
commit
|
commitdiff
|
tree
2018-12-17
Szilá
r
d Pá
l
l
Fix GMX_BUILD_OWN_FF
T
W_U
R
L CMake cache ent
r
y
type
commit
|
commitdiff
|
tree
2018-12-14
S
zilárd Páll
E
na
b
le ARMPL in the armclan
g
build
commit
|
commitdiff
|
tree
2018-12-13
Szilárd
Pál
l
A
v
oid
spur
i
ous ti
m
ing in b
o
nded GPU
l
aunch sub
c
ounter
commit
|
commitdiff
|
tree
2018-12-13
Szilárd
P
áll
Document t
h
e FP exception i
n
cuFFT 7
.
0
commit
|
commitdiff
|
tree
2018-12-12
Szilárd Páll
Improve DLB repor
t
/note
commit
|
commitdiff
|
tree
2018-12-11
Szil
á
rd Pál
l
Twea
k
t
he b
o
nded
GPU energy copy
/
wai
t
operati
o
ns
commit
|
commitdiff
|
tree
2018-12-06
Szil
á
r
d
Páll
Ad
d
Bonde
d
GPU launch overhe
a
d
c
yc
l
e
subc
o
u
n
ter
commit
|
commitdiff
|
tree
2018-12-06
Sz
i
lárd Páll
S
w
ap the order
o
f GP
U
bonded
a
nd
nonbonded
l
aunch
commit
|
commitdiff
|
tree
2018-12-06
Szil
á
rd P
á
ll
Fix con
d
iti
o
nal i
n
n
o
nloc
a
l nbnx
n
G
PU work
s
kipping
commit
|
commitdiff
|
tree
2018-12-06
Szilár
d
Pá
l
l
Split nbnxn
inp
u
t
copy
an
d
k
e
rnel
l
a
unch
commit
|
commitdiff
|
tree
2018-12-05
Szilárd
P
á
ll
Correct thread c
o
u
n
t in the PME GPU reduction
commit
|
commitdiff
|
tree
2018-11-27
Szilárd Páll
Add
AR
M
PL support
to admin script
commit
|
commitdiff
|
tree
2018-11-27
Szilá
r
d
P
ál
l
A
d
d tweak
s
to
sup
p
ort ARMPL
for FFTs
commit
|
commitdiff
|
tree
2018-11-07
Szi
l
árd Pál
l
Re-enable the armclan
g
post-submit build
commit
|
commitdiff
|
tree
2018-11-07
Szilárd Pá
l
l
Elimin
a
te m
a
cro t
h
at expa
n
ds
to var
i
ab
l
e in PME GPU
commit
|
commitdiff
|
tree
2018-11-07
Szilárd Páll
E
ns
u
re minimum exec width of the
P
ME
OpenCL ke
r
nel
s
commit
|
commitdiff
|
tree
2018-10-14
Szilá
r
d
P
áll
Fix more clang-6 w
a
rnings in CUDA code
commit
|
commitdiff
|
tree
2018-10-14
Sz
i
lárd Pá
l
l
M
ode
r
niz
e
OpenCL memory allo
c
ati
o
n flags
commit
|
commitdiff
|
tree
2018-10-10
Szilárd Páll
Swap
custom OpenCL me
m
s
e
t k
e
rnel for cl
E
nqueueFillBu
f
fer
commit
|
commitdiff
|
tree
2018-10-09
S
z
ilár
d
Páll
U
pdate
r
egressiontest
r
e
f
to
download
commit
|
commitdiff
|
tree
2018-10-08
Szilá
r
d Páll
Twe
a
k Fi
n
dFFTW API chec
k
s
commit
|
commitdiff
|
tree
2018-10-08
Szil
á
rd
Páll
Fix c
l
ang-6 war
n
in
g
s
commit
|
commitdiff
|
tree
2018-10-08
Sz
i
lárd Páll
Replace s
o
me NULL with null
p
tr
i
n CUDA code
commit
|
commitdiff
|
tree
2018-10-07
Szilárd
P
áll
Use new G
P
U slave
for AMD OpenCL veri
f
y runs
commit
|
commitdiff
|
tree
2018-10-05
Szilá
r
d Páll
U
p
dat
e
t
est ma
t
rices w
i
t
h
new G
P
U speci
f
iers
commit
|
commitdiff
|
tree
2018-09-29
Szilá
r
d
P
áll
F
ix
constraints cycle counting
commit
|
commitdiff
|
tree
2018-09-21
Szilárd Páll
Bump test timeout only for OpenCL integration test
s
commit
|
commitdiff
|
tree
2018-08-28
Szilárd
Páll
Qui
e
t
cm
a
ke about clFFT no
t
found after first
run
commit
|
commitdiff
|
tree
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