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Add cool quote
2018-01-03
Mark Abra
h
am
Add cool quote
commit
|
commitdiff
|
tree
2017-12-15
Mark
Abraha
m
Make OpenC
L
implementation of gpu_util
s
tests conform
commit
|
commitdiff
|
tree
2017-12-14
Mark Abraha
m
Fix ret
u
r
n
v
alues of
f
rame-reading functions
commit
|
commitdiff
|
tree
2017-12-14
Ma
r
k Abraham
Make AVX-
5
12 CMake detc
t
ion work
commit
|
commitdiff
|
tree
2017-12-14
Ma
r
k Ab
r
a
ham
Merg
e
"
M
erge branch rel
e
ase-2016 into rele
a
s
e-2
0
1
8
.
.
.
commit
|
commitdiff
|
tree
2017-12-12
Mar
k
Abr
a
ha
m
Impro
v
e
grompp
m
issing-para
m
eter
s
error messag
e
commit
|
commitdiff
|
tree
2017-12-12
Mark A
b
raham
Merge
b
ranch release-2016 into release
-
2018
commit
|
commitdiff
|
tree
2017-12-11
Mark A
b
r
a
ham
Second beta
release of 201
8
commit
|
commitdiff
|
tree
2017-12-11
Mar
k
Abraham
Leave NVML use
off by
d
efault
commit
|
commitdiff
|
tree
2017-12-11
Mark
A
braha
m
Check for GPU dete
c
ti
o
n
support
b
efore detecting
commit
|
commitdiff
|
tree
2017-12-11
Mark
A
braham
Consume any error
p
r
oduced durin
g
GPU dete
c
tion
commit
|
commitdiff
|
tree
2017-12-11
M
a
rk
A
braham
Avoid signed-ov
e
rflow warning with gcc 7
commit
|
commitdiff
|
tree
2017-12-11
Mark Abraham
Re
m
o
ve
S
IMD s
h
ift opera
t
o
r
s
commit
|
commitdiff
|
tree
2017-12-08
Mark
A
braham
Re
f
ine ulp tolera
n
ces for some
m
ore ewal
d
tests
commit
|
commitdiff
|
tree
2017-12-05
Mark Abraham
F
i
x
mdrun -nb au
t
o -pme auto wh
e
n G
P
Us are a
b
s
e
nt
commit
|
commitdiff
|
tree
2017-12-05
M
ark Abraham
Update testing to i
n
clude cma
k
e
3
.
10
.
0
commit
|
commitdiff
|
tree
2017-12-04
M
ar
k
Abrah
a
m
F
i
x free_gpu
commit
|
commitdiff
|
tree
2017-12-04
Mark Abraham
Fi
x
unused variables
i
n C
P
U prun
i
ng kernels
commit
|
commitdiff
|
tree
2017-12-04
Mark Abr
a
h
am
M
erge bran
c
h release-2016 i
n
to
release-2
0
1
8
commit
|
commitdiff
|
tree
2017-12-03
Mark
A
brah
a
m
F
ix
fft5d pinni
n
g
commit
|
commitdiff
|
tree
2017-11-28
Ma
r
k Abr
a
ham
G
ROMACS 2018
f
i
rst bet
a
r
elease
commit
|
commitdiff
|
tree
2017-11-24
Mark Abraham
Update developer guide
commit
|
commitdiff
|
tree
2017-11-24
Mark Abraham
Act
i
vate PM
E
on GPUs
commit
|
commitdiff
|
tree
2017-11-24
Mark Abraham
S
e
par
a
te management of GPU contexts from modules
commit
|
commitdiff
|
tree
2017-11-24
Mark Abraham
Add PME integrat
i
o
n tes
t
commit
|
commitdiff
|
tree
2017-11-24
Mark Abraham
Extend tas
k
as
s
ignment code
commit
|
commitdiff
|
tree
2017-11-21
M
a
rk Ab
r
aham
U
se muc
h
less PaddedRVecV
e
ct
o
r and more ArrayRe
f
of
.
.
.
commit
|
commitdiff
|
tree
2017-11-21
Mark Abrah
a
m
S
upport pinning in Hos
t
Alloc
a
tor
commit
|
commitdiff
|
tree
2017-11-20
Mark A
b
rah
a
m
F
i
x
night
l
y matrix confi
g
commit
|
commitdiff
|
tree
2017-11-19
Mark Abrah
a
m
Fix FindCUDA
.
cma
k
e f
o
r
-Wunde
f
commit
|
commitdiff
|
tree
2017-11-17
Mark Abraham
Use HostAl
l
ocationPoli
c
y for char
g
eA
commit
|
commitdiff
|
tree
2017-11-17
M
ark Abraham
Add checking
f
unction fo
r
whether a buffer is pinned
commit
|
commitdiff
|
tree
2017-11-17
Mark Abr
a
h
a
m
I
m
prove handling
of P
M
E GPU force buffer
commit
|
commitdiff
|
tree
2017-11-10
Mark Abraha
m
Import cmake Mod
u
les/
F
indC
U
DA
.
cmake
commit
|
commitdiff
|
tree
2017-11-09
Mark Abraham
Prep
a
red t_md
a
tom
s
for usi
n
g vector
commit
|
commitdiff
|
tree
2017-11-09
M
ark Ab
r
aha
m
Introduce HostAllocationPoli
c
y
commit
|
commitdiff
|
tree
2017-11-07
Mark Abraham
R
e
form gmx_pme_p
p
alloc and use vector
commit
|
commitdiff
|
tree
2017-11-07
Mark
A
b
r
a
h
am
Introduce gmxopenc
l
.
h
commit
|
commitdiff
|
tree
2017-11-07
Mark Abraha
m
Test clang on AR
M
in nightly matrix
commit
|
commitdiff
|
tree
2017-11-07
Mark
A
braham
I
mprove
PME in
c
ludes
commit
|
commitdiff
|
tree
2017-11-03
Mark Abraham
Merge "Merge branch
r
elease-2016"
commit
|
commitdiff
|
tree
2017-11-02
Mark Abraham
Merge branch r
e
lease-2016
commit
|
commitdiff
|
tree
2017-11-01
Mark A
b
r
aham
Fi
x
thread-MPI rank cho
i
ce
fo
r
or
i
entat
i
on
r
est
r
aints
commit
|
commitdiff
|
tree
2017-11-01
M
ark Abraham
Im
p
rove han
d
ling
of GPU IDs
commit
|
commitdiff
|
tree
2017-10-31
Mark Abraham
Update trea
t
m
e
n
t
of GPU co
m
p
at
i
bi
l
i
ty data struc
t
u
re
commit
|
commitdiff
|
tree
2017-10-30
Mark Abraham
Fix
a
n
d u
p
date h
w
_i
n
fo
commit
|
commitdiff
|
tree
2017-10-27
Mark Abraham
Fix hw detec
t
ion more
commit
|
commitdiff
|
tree
2017-10-26
Mar
k
A
b
r
a
ham
Make
r
elea
s
e ma
t
rix work
a
gain
commit
|
commitdiff
|
tree
2017-10-26
Mar
k
A
b
r
a
ham
New quote
commit
|
commitdiff
|
tree
2017-10-25
Mark Abr
a
ham
Teach the
copyr
i
ght chec
k
er about temp
l
ate
.
cpp
commit
|
commitdiff
|
tree
2017-10-20
Mark A
b
raham
Clari
f
y docs for Fmax in
E
M
commit
|
commitdiff
|
tree
2017-10-20
Mar
k
A
braham
Mer
g
e branch r
e
lease-2016
commit
|
commitdiff
|
tree
2017-10-16
Mark Abr
a
ham
Mer
g
e bra
n
c
h
r
elease-20
1
6
commit
|
commitdiff
|
tree
2017-10-13
Mark Abraha
m
Upda
t
e
t
ests for C++11 compiler an
d
s
tand
a
rd library
commit
|
commitdiff
|
tree
2017-10-13
Mark Abraham
Fix c
p
uinfo on clang
+ non-x86
commit
|
commitdiff
|
tree
2017-10-11
Mar
k
Abraham
Introduced
h
eader for
c
o
mm
u
n
ication t
o
/from PME ranks
commit
|
commitdiff
|
tree
2017-10-11
Ma
r
k Abraham
Cl
e
aned up ewal
d
coef
f
f
or PME-only r
a
nks
commit
|
commitdiff
|
tree
2017-10-11
Mark Abraham
U
s
e clan
g
-5 in Jenkins
commit
|
commitdiff
|
tree
2017-10-07
Mark Abraham
Tell cppc
h
eck that
.
cpp a
n
d
.
c
u files are c
+
+
commit
|
commitdiff
|
tree
2017-10-05
M
ark Abraham
Con
t
i
n
ue remov
i
ng -nb
g
p
u_cpu
commit
|
commitdiff
|
tree
2017-10-04
Mark Abraham
Enable gro
u
p-scheme
SIMD with GMX_SIMD=
A
VX2_128
commit
|
commitdiff
|
tree
2017-10-03
Mark Abrah
a
m
Introduc
e
a
nd
u
se
A
lig
n
edAlloca
t
ionPolicy
commit
|
commitdiff
|
tree
2017-09-19
Mark Abra
h
a
m
Update
t
e
s
t
ing matric
e
s to test wit
h
(latest) icc-18
commit
|
commitdiff
|
tree
2017-09-17
M
ark Ab
r
aham
Merge branch re
l
ease-2016
commit
|
commitdiff
|
tree
2017-09-15
Mark Ab
r
ah
a
m
E
x
press i
n
t
ent of matrix r
e
lease buil
d
typ
e
s
explicitl
y
commit
|
commitdiff
|
tree
2017-09-15
Mark Ab
r
aha
m
Bu
m
ped
p
atch
versi
o
n for next re
l
ease
commit
|
commitdiff
|
tree
2017-09-15
Ma
r
k Ab
r
aham
Ve
r
si
o
n
2
0
16
.
4
commit
|
commitdiff
|
tree
2017-09-14
Mark Abraham
Form taskassignm
e
nt m
o
dule
commit
|
commitdiff
|
tree
2017-09-14
Mark Abr
a
h
am
Fix compat m
o
dule definition
commit
|
commitdiff
|
tree
2017-09-12
Mark Abraham
Mer
g
e branch relea
s
e-2016
commit
|
commitdiff
|
tree
2017-09-07
Mark Ab
r
aha
m
I
n
troduce type-safe GPU emulation va
r
iabl
e
s
commit
|
commitdiff
|
tree
2017-09-07
Mark
A
braha
m
E
nable group-scheme SIMD kernels
o
n recent AVX e
x
tension
s
commit
|
commitdiff
|
tree
2017-09-06
Mark Abraham
Prepa
r
e Verlet scheme later in runner
commit
|
commitdiff
|
tree
2017-09-05
M
a
rk Abraham
F
ixes f
o
r
Sola
r
is
commit
|
commitdiff
|
tree
2017-09-05
Ma
r
k Ab
r
aham
Fix use
of GPU
information
f
o
r
thread-M
P
I
setup
commit
|
commitdiff
|
tree
2017-09-03
M
ark Abraham
Fix compiler fla
g
s for using MKL
commit
|
commitdiff
|
tree
2017-09-03
M
ark Abraham
Merge b
r
anch
r
e
lease
-
5
-
1 into
r
el
e
ase-2016
commit
|
commitdiff
|
tree
2017-08-25
Mark Abra
h
am
Fix flat-bottomed posit
i
on
r
estr
a
ints with
multiple
.
.
.
commit
|
commitdiff
|
tree
2017-08-23
Mark Ab
r
a
h
am
Stopped ch
e
ckpoint influencing pa
r
allelism
set
u
p
commit
|
commitdiff
|
tree
2017-08-22
Mark Abraham
Run GPU detect
i
on even
for mdrun -n
b
cp
u
commit
|
commitdiff
|
tree
2017-08-22
Mark Abraham
Fixed thread-MPI with non-d
e
f
a
ult -npme
commit
|
commitdiff
|
tree
2017-08-22
Mar
k
Abraham
Fix missing
d
eclaratio
n
of GMX_UN
U
SED_VALUE
commit
|
commitdiff
|
tree
2017-08-22
Mark Abraham
Merge
branch rele
a
se-2016
commit
|
commitdiff
|
tree
2017-08-21
Ma
r
k Abr
a
h
am
Mo
v
ed inc
r
ease_ns
t
list() to nbnxn_tun
i
n
g
.
h
commit
|
commitdiff
|
tree
2017-08-21
M
a
rk Abraham
F
i
x
com
p
ilation issu
e
s
w
ith ARM SIMD
commit
|
commitdiff
|
tree
2017-08-17
M
a
rk
A
braha
m
Replace c
o
ns
i
st
e
ncy c
h
ecking with assertion
commit
|
commitdiff
|
tree
2017-08-16
Mark Abrah
a
m
Parse
user
-
supplie
d
GP
U
tas
k
assignment only w
h
en n
e
ede
d
commit
|
commitdiff
|
tree
2017-08-16
M
ark Abr
a
ham
R
e
move du
p
licate GPU non-usage
h
int
commit
|
commitdiff
|
tree
2017-08-16
Mark Abraham
M
oved loggin
g
functionality into
GPU u
s
a
ge rep
o
rt
commit
|
commitdiff
|
tree
2017-08-15
Mark A
b
raham
Merge
br
a
nch release-5-
1
i
n
t
o rel
e
ase-2016
commit
|
commitdiff
|
tree
2017-08-15
Mar
k
Ab
r
a
h
am
Fi
x
value of Ewal
d
shi
f
t
commit
|
commitdiff
|
tree
2017-08-10
Mark
Ab
r
a
ham
Cl
a
r
ify data
f
l
o
w in GPU
t
ask a
s
signment
commit
|
commitdiff
|
tree
2017-08-07
M
ark Abraham
Fix include dep
e
nden
c
y for getenv
commit
|
commitdiff
|
tree
2017-08-07
Mark Abraham
Simplified
handling
o
f GPU de
v
ice
I
Ds
commit
|
commitdiff
|
tree
2017-08-06
Mark Abr
a
ham
Simplify resource-divisi
o
n
efficiency check
commit
|
commitdiff
|
tree
2017-08-06
Mark
A
br
a
ham
Split
printhardwar
e
from d
e
tecthardw
a
re
commit
|
commitdiff
|
tree
2017-08-06
Mark Abr
a
ham
Decouple task
a
ssig
n
ment from task executi
o
n
commit
|
commitdiff
|
tree
2017-08-06
Mar
k
Ab
r
ah
a
m
Remove
d
unus
e
d host-side alloc
a
t
ion code
commit
|
commitdiff
|
tree
2017-08-04
Mark
Abrah
a
m
Stop using
hwinfo_
g
for reporting code
commit
|
commitdiff
|
tree
2017-08-03
M
ark
A
b
r
aham
Removed
u
nused include statements
commit
|
commitdiff
|
tree
next