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Remove support for ARMv7
2019-12-28
M
a
rk Ab
r
aham
Remove support for A
R
M
v
7
commit
|
commitdiff
|
tree
2019-12-28
Mark Abraha
m
St
o
p
t
esting ARMv7
commit
|
commitdiff
|
tree
2019-12-12
M
a
rk Abraham
M
erge
"
Merge branch 'origin/release-2020' into mas
t
er"
commit
|
commitdiff
|
tree
2019-12-06
Mark Abrah
a
m
Avoi
d
3
8
6 O3
code
g
en bug
commit
|
commitdiff
|
tree
2019-12-06
Mark Abraham
P
r
ovide
more feedba
c
k when
listed forces tests fail
commit
|
commitdiff
|
tree
2019-12-04
Mark Ab
r
aham
Added O
p
enCL build to relea
s
e ma
t
rix
commit
|
commitdiff
|
tree
2019-12-04
Mark Abraham
Rem
o
ved u
n
necessary
link_direct
o
ries command for gtest
commit
|
commitdiff
|
tree
2019-12-01
M
a
rk Abraham
F
urther imp
r
ove taskassi
g
nment
e
xception handling
commit
|
commitdiff
|
tree
2019-11-29
Ma
r
k
Abraham
Merge branc
h
relea
s
e-2019 in
t
o rel
e
a
s
e-202
0
commit
|
commitdiff
|
tree
2019-11-27
Ma
r
k Abraham
Disable GPU PME-PP communication wi
t
h mdrun -pmefft cpu
commit
|
commitdiff
|
tree
2019-11-26
Mark Abra
h
am
Improve han
d
ling of task-
a
ssignment exceptions
commit
|
commitdiff
|
tree
2019-11-26
Mark Abraham
Rela
x
toleranc
e
for bd t
e
sts
commit
|
commitdiff
|
tree
2019-11-21
Mark A
b
raham
Merge branch releas
e
-2020
commit
|
commitdiff
|
tree
2019-11-21
Ma
r
k Abraham
New coo
l
quot
e
commit
|
commitdiff
|
tree
2019-11-20
Mark A
b
raha
m
Q
uiet uninitializ
e
d vari
a
b
le war
n
ing with clang
9
commit
|
commitdiff
|
tree
2019-11-19
Mark Abraham
Updat
e
d rele
a
se
notes for CODATA update
commit
|
commitdiff
|
tree
2019-11-16
Mark
Abraham
Rel
a
xed listed forces test
to
l
era
n
ces
commit
|
commitdiff
|
tree
2019-11-16
Mark Abr
a
ham
St
o
p testi
n
g that hwloc cach
e
-size detection works
.
.
.
commit
|
commitdiff
|
tree
2019-10-31
Mar
k
A
brah
a
m
Te
s
ts
f
or valid p
e
ri
o
dic ac
t
ions
commit
|
commitdiff
|
tree
2019-10-13
Mark Abraham
Ensure environm
e
n
t va
r
iab
l
e use does not give warnings
commit
|
commitdiff
|
tree
2019-10-07
Mark Abra
h
am
Extend GPU tr
a
its cla
s
s
commit
|
commitdiff
|
tree
2019-10-04
Mark Abraham
Fix t
h
at
t
ests intended
for multiple
r
anks run
that
wa
y
commit
|
commitdiff
|
tree
2019-10-02
Ma
r
k
A
braham
Improve PME
testing
commit
|
commitdiff
|
tree
2019-10-01
Mark
Abr
a
ham
Move GPU
task assignment
commit
|
commitdiff
|
tree
2019-10-01
Mark Abra
h
am
Fix i
c
c war
n
ings
commit
|
commitdiff
|
tree
2019-10-01
Mark
Abr
a
ham
Remo
v
ed d
e
pendency
on com
m
r
ec
o
f m
d
run
s
et
u
p
commit
|
commitdiff
|
tree
2019-09-30
Mark Abrah
a
m
M
ake
a
b
u
i
lder for DD
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Improve MiMiC tes
t
imp
l
eme
n
tat
i
on
commit
|
commitdiff
|
tree
2019-09-27
Mar
k
Abraham
S
top c
h
ecking CUDA version reported by nvcc
commit
|
commitdiff
|
tree
2019-09-27
Mark
Abraha
m
Fi
x
g
ro file
o
utpu
t
w
ith index groups
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Add
tests f
o
r editconf file conve
r
sion
w
i
t
h indexing
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
F
i
x
g
ro file output wi
t
h
index groups
commit
|
commitdiff
|
tree
2019-09-27
M
a
r
k Abraham
Remove lef
t
ov
e
r support for pre-9
.
0
CUDA
commit
|
commitdiff
|
tree
2019-09-25
Mark Abraham
Fix log file
f
l
ag output
commit
|
commitdiff
|
tree
2019-09-24
Ma
r
k
Abraham
Fix no
-
MPI CUDA build
commit
|
commitdiff
|
tree
2019-09-24
M
a
rk Abraham
Merge "M
e
rge branch rele
a
se-2019 into
master"
commit
|
commitdiff
|
tree
2019-09-24
M
ark
Abra
h
a
m
Fix cl
a
ng unused-funct
i
on warnings
commit
|
commitdiff
|
tree
2019-09-23
Mark Abr
a
ha
m
Fixes to broken CU
D
A compiler
f
l
ags
commit
|
commitdiff
|
tree
2019-09-23
Mark A
b
raha
m
F
ix 1D-
1
pul
s
e support
commit
|
commitdiff
|
tree
2019-09-20
Mark
Abraham
Refactor
t
o
cr
e
ate a GpuTaskAssignments object
commit
|
commitdiff
|
tree
2019-09-19
Mark Ab
r
aham
Use GPU halo e
x
cha
n
ge on
l
y when compati
b
le DD is ava
i
lab
l
e
commit
|
commitdiff
|
tree
2019-09-19
Ma
r
k Abraham
Further improve
g
etDDG
r
idSetup
commit
|
commitdiff
|
tree
2019-09-16
Mark Abrah
a
m
Avoid short-range GPU o
p
erati
o
ns with no
w
o
rk
commit
|
commitdiff
|
tree
2019-09-12
M
ark Abr
a
ham
D
isabl
e
r
e
por
t
-methods e
n
d
-to-en
d
test
commit
|
commitdiff
|
tree
2019-09-11
Mark Abraha
m
Ma
k
e gmx_multisim_t a C++ object
commit
|
commitdiff
|
tree
2019-09-11
Mark
Abraham
Fix mult
i
-sim re
s
tart handling
i
n cor
n
er
cases
commit
|
commitdiff
|
tree
2019-09-10
M
a
rk Abraha
m
Avoid warning in
no-mpi bui
l
d
commit
|
commitdiff
|
tree
2019-09-10
M
a
rk Abraham
Use more RAII semantics with t
_
commrec
commit
|
commitdiff
|
tree
2019-09-06
Mark Abraham
Clean
up commrec un
i
f
o
rmly
commit
|
commitdiff
|
tree
2019-09-05
M
a
rk Abraham
Upd
a
te mdrun
t
est compa
r
i
s
on infrastructu
r
e
commit
|
commitdiff
|
tree
2019-09-03
Mark Abraham
Simplify
e
ner
g
y-file comparisons in tests
commit
|
commitdiff
|
tree
2019-09-02
Mark Abraham
Move initializati
o
n of
c
lFFT
commit
|
commitdiff
|
tree
2019-08-30
Mar
k
A
b
rah
a
m
Fix buil
d
mat
r
i
c
es
commit
|
commitdiff
|
tree
2019-08-29
Mark Abrah
a
m
More qu
o
tes
commit
|
commitdiff
|
tree
2019-08-28
Mark Abraham
Fix
i
nte
g
ration issu
e
s
commit
|
commitdiff
|
tree
2019-08-28
Mar
k
A
braham
Improved usability of g
r
om
p
p b
y
rej
e
c
ti
n
g more invalid
.
.
.
commit
|
commitdiff
|
tree
2019-08-27
Mark Abraham
Add integration tests for exact restart
s
commit
|
commitdiff
|
tree
2019-08-26
Mark A
b
rah
a
m
Make
F
EP rerun t
e
sts c
o
ver the inte
n
ded lamb
d
a space
commit
|
commitdiff
|
tree
2019-08-26
M
a
rk Abraha
m
Co
n
v
e
r
t
ed a CUDA config to use cl
a
ng h
o
s
t-only c
o
mpilation
commit
|
commitdiff
|
tree
2019-08-26
Mark Abraham
Fix pairli
s
t
bug
commit
|
commitdiff
|
tree
2019-08-23
Mark Abr
a
ham
Update
clang-tidy
to clang ver
s
i
on 8
commit
|
commitdiff
|
tree
2019-08-22
M
a
rk
A
braham
Merge branch releas
e
-2019
commit
|
commitdiff
|
tree
2019-08-22
M
ark
A
br
a
ham
Improve
c
lang-analyzer bui
l
d t
i
me
commit
|
commitdiff
|
tree
2019-08-22
Mark Abraham
Fix release matrix
commit
|
commitdiff
|
tree
2019-08-21
Mark
A
braham
Imp
r
ove or
g
anization
o
f
LINCS
r
eporting
commit
|
commitdiff
|
tree
2019-08-20
M
ark A
b
raham
Apply
c
lang-
t
idy-8 rea
d
a
b
il
i
ty-up
p
erc
a
se-literal-suffix
commit
|
commitdiff
|
tree
2019-08-20
Ma
r
k Abraha
m
Use pote
n
tial-shi
f
t as defau
l
t m
o
difi
e
r
commit
|
commitdiff
|
tree
2019-08-20
M
a
r
k Abraham
Reduce co
s
ine acc
e
leration quantity pr
o
perly
commit
|
commitdiff
|
tree
2019-08-20
Mark Abraham
Fix issu
e
s fo
r
c
l
a
ng-analyzer-8
commit
|
commitdiff
|
tree
2019-08-19
Mar
k
Ab
r
aham
Modernize t_
m
atrix, t_mapp
i
ng, t_rgb
commit
|
commitdiff
|
tree
2019-08-19
Mark Abraham
Modernize t_psdata
commit
|
commitdiff
|
tree
2019-08-16
Mar
k
Abraham
Update
t
e
s
ting
matrice
s
an
d
fix warnin
g
s
commit
|
commitdiff
|
tree
2019-08-16
Mark Abraham
Move keyvaluetreew
r
it
e
r
c
o
d
e
commit
|
commitdiff
|
tree
2019-08-16
Ma
r
k
Abraham
Stop
n
bnxm/grid
.
h depending on SIMD module
commit
|
commitdiff
|
tree
2019-08-15
Mark Abraham
Remove
r
u
n-time check
from calc_
s
hifts
commit
|
commitdiff
|
tree
2019-08-14
M
a
rk
Abraham
Fix vv integrators
commit
|
commitdiff
|
tree
2019-08-13
Mark Ab
r
a
ham
Rem
o
ve workar
o
u
n
d for buggy cma
k
e
commit
|
commitdiff
|
tree
2019-08-13
Ma
r
k Abraham
Fix icc 19 codege
n
issue
commit
|
commitdiff
|
tree
2019-08-12
Mark Abr
a
ham
Quiet warning
commit
|
commitdiff
|
tree
2019-08-12
Mark Abrah
a
m
Fix ocl_kerne
l
target
commit
|
commitdiff
|
tree
2019-08-08
Mark Abra
h
a
m
Fi
x
est
i
mate of the size of a j list
commit
|
commitdiff
|
tree
2019-08-08
Mark Abraham
Initialize gmx_ekindata_t and t_vcm prope
r
l
y
commit
|
commitdiff
|
tree
2019-08-08
M
a
r
k Abraham
Stop te
s
ting ICC o
n
Window
s
commit
|
commitdiff
|
tree
2019-08-06
Ma
r
k A
b
raham
Fix for MSVC
+
CUDA
commit
|
commitdiff
|
tree
2019-08-05
M
a
rk
A
b
raham
Add quo
t
e
commit
|
commitdiff
|
tree
2019-08-05
M
ark Abraham
R
e
move libgroma
c
s_ge
n
e
r
a
t
ed contribut
i
ons from
FindCUDA
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark A
b
r
aham
Manage compiler flags and some include option
s
p
e
r
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark Abraham
Improve use of
object
librar
i
es in libg
r
om
a
cs
commit
|
commitdiff
|
tree
2019-08-01
Mark
A
braham
M
erg
e
"Merge release-2019 int
o
m
a
ster"
commit
|
commitdiff
|
tree
2019-07-24
Mark Abraham
Rem
o
ve
t
ests
of
m
ake_
u
n
iqu
e
commit
|
commitdiff
|
tree
2019-07-23
Mark
A
b
rah
a
m
Update developer guide
commit
|
commitdiff
|
tree
2019-07-16
M
a
r
k Abrah
a
m
Add gpubufferops test mat
r
i
x
commit
|
commitdiff
|
tree
2019-07-11
Ma
r
k Abraham
Fix pre-
s
ubmi
t
bui
l
d m
a
tri
x
and
descript
i
on
commit
|
commitdiff
|
tree
2019-07-08
Mark Abrah
a
m
Fix hwloc
a
nd sph
i
nx detection
commit
|
commitdiff
|
tree
2019-07-08
Mark A
b
raha
m
Test sp
e
c
i
fic hwlo
c
versi
o
ns
commit
|
commitdiff
|
tree
2019-07-05
Mark Abraham
I
m
pr
o
ve
tests
o
f
index block construct
i
on
commit
|
commitdiff
|
tree
2019-07-05
M
a
rk Abraham
M
o
dernize FindHwloc
.
cmake
commit
|
commitdiff
|
tree
2019-07-04
Ma
r
k Abraham
F
urth
e
r clang-ti
d
y-7
fix
commit
|
commitdiff
|
tree
2019-07-04
M
a
rk
A
braha
m
F
i
x
c
l
ang-tidy-7 i
s
su
e
s
commit
|
commitdiff
|
tree
2019-07-03
M
ark
Abraham
Reorder options
commit
|
commitdiff
|
tree
next