repo.or.cz
/
gromacs.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
Stop testing that hwloc cache-size detection works properly
2019-11-16
Mark Abraham
St
o
p tes
t
ing tha
t
hwloc cache-size detection works
.
.
.
commit
|
commitdiff
|
tree
2019-10-31
Mark Abraham
Te
s
t
s
for valid periodic
a
ctions
commit
|
commitdiff
|
tree
2019-10-13
Mark A
b
raham
Ens
u
re
environment variable use does not
give
w
a
r
nin
g
s
commit
|
commitdiff
|
tree
2019-10-07
Mar
k
Abr
a
h
a
m
Ext
e
nd
G
PU traits class
commit
|
commitdiff
|
tree
2019-10-04
M
a
rk A
b
r
aham
Fix
that tests intended for multiple
rank
s
ru
n
that way
commit
|
commitdiff
|
tree
2019-10-02
Mar
k
Abraham
Improve PME testing
commit
|
commitdiff
|
tree
2019-10-01
Mark A
b
raham
Mo
v
e GPU task assi
g
nment
commit
|
commitdiff
|
tree
2019-10-01
Mark Abra
h
am
Fix icc w
a
rnings
commit
|
commitdiff
|
tree
2019-10-01
M
a
r
k
Abraham
Removed dependency on comm
r
ec of mdr
u
n setup
commit
|
commitdiff
|
tree
2019-09-30
Mark
Abraham
M
a
ke a builde
r
for DD
commit
|
commitdiff
|
tree
2019-09-27
Mark
A
brah
a
m
Improve
MiMiC te
s
t
im
p
lementati
o
n
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
S
t
op
c
h
e
c
k
i
ng CUDA versi
o
n reported by nvcc
commit
|
commitdiff
|
tree
2019-09-27
Mark Abra
h
am
Fix gro fi
l
e
output with index
grou
p
s
commit
|
commitdiff
|
tree
2019-09-27
M
a
r
k Abraham
Add tes
t
s for editconf
f
i
le conversion wi
t
h indexing
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Fix
g
ro file output with index gr
o
ups
commit
|
commitdiff
|
tree
2019-09-27
Mar
k
Abraham
Remo
v
e l
e
ftover supp
o
rt for pr
e
-9
.
0 CUDA
commit
|
commitdiff
|
tree
2019-09-25
M
ark Abraha
m
F
ix
l
og file flag output
commit
|
commitdiff
|
tree
2019-09-24
Mark Abrah
a
m
F
i
x
no-
M
PI
C
U
DA bu
i
ld
commit
|
commitdiff
|
tree
2019-09-24
Mark Abraham
Merg
e
"Merge branch r
e
lease-2019 into
master"
commit
|
commitdiff
|
tree
2019-09-24
Mark Abraham
Fi
x
c
l
ang unuse
d
-function wa
r
nings
commit
|
commitdiff
|
tree
2019-09-23
Mark A
b
raha
m
Fi
x
e
s to b
r
oken CUDA compiler f
l
ags
commit
|
commitdiff
|
tree
2019-09-23
M
ark
Abraham
Fix
1D-1
p
ulse support
commit
|
commitdiff
|
tree
2019-09-20
Mark Ab
r
aham
Refa
c
tor to crea
t
e a GpuTaskAssignments object
commit
|
commitdiff
|
tree
2019-09-19
Mark Abra
h
a
m
Us
e
GPU
hal
o
exchange on
l
y wh
e
n c
o
mpatib
l
e DD i
s
avail
a
ble
commit
|
commitdiff
|
tree
2019-09-19
Mark Abraham
Further improve getDDGr
i
dSet
u
p
commit
|
commitdiff
|
tree
2019-09-16
Mark A
b
r
a
ham
Avoid short-range GPU operatio
n
s
w
i
th no
work
commit
|
commitdiff
|
tree
2019-09-12
Mark Abra
h
am
Di
s
able r
e
p
o
rt
-
meth
o
ds end-to-end te
s
t
commit
|
commitdiff
|
tree
2019-09-11
Mark Abraham
M
ake
g
m
x_m
u
ltisim_t a
C++ object
commit
|
commitdiff
|
tree
2019-09-11
Mark Abra
h
a
m
Fix multi-sim
restart handl
i
ng in
corner c
a
ses
commit
|
commitdiff
|
tree
2019-09-10
Mark Abraham
A
v
oid w
a
rning i
n
no-mpi build
commit
|
commitdiff
|
tree
2019-09-10
M
a
r
k Abraham
Use more RA
I
I s
e
m
a
ntics with
t
_
commrec
commit
|
commitdiff
|
tree
2019-09-06
M
a
rk Abraha
m
C
l
e
a
n up commre
c
unif
o
rmly
commit
|
commitdiff
|
tree
2019-09-05
Ma
r
k Abraham
Upd
a
t
e
md
r
un test
comparison
infr
a
s
t
ructure
commit
|
commitdiff
|
tree
2019-09-03
Mark Abraham
Simplify energy-file
c
o
mparisons in tests
commit
|
commitdiff
|
tree
2019-09-02
Mark Abr
a
h
am
Move initi
a
lization
o
f
c
lFFT
commit
|
commitdiff
|
tree
2019-08-30
M
ark A
b
raham
F
i
x
b
uild m
a
tric
e
s
commit
|
commitdiff
|
tree
2019-08-29
M
ar
k
Abraham
Mo
r
e quotes
commit
|
commitdiff
|
tree
2019-08-28
Mark
Abraham
Fix integration issues
commit
|
commitdiff
|
tree
2019-08-28
Mark
A
b
r
aham
Impr
o
ved usabi
l
ity
of
grom
p
p by
r
ejecting mor
e
i
nvalid
.
.
.
commit
|
commitdiff
|
tree
2019-08-27
Mar
k
Abraham
Add in
t
e
gration test
s
f
o
r
exact restarts
commit
|
commitdiff
|
tree
2019-08-26
Mark Ab
r
aham
Make
F
E
P
rerun tests cover the intended l
a
m
b
d
a
s
p
a
ce
commit
|
commitdiff
|
tree
2019-08-26
Mark
A
braham
C
onverted a CUDA confi
g
to use cl
a
ng host-only c
o
mpila
t
ion
commit
|
commitdiff
|
tree
2019-08-26
Mark Abra
h
am
Fix pairlist
b
u
g
commit
|
commitdiff
|
tree
2019-08-23
Mark Abraham
Update
c
lang-tidy to
clang version 8
commit
|
commitdiff
|
tree
2019-08-22
Mark
A
brah
a
m
M
e
rge bran
c
h re
l
e
ase-2019
commit
|
commitdiff
|
tree
2019-08-22
Ma
r
k
Abraham
I
m
prov
e
clang
-
a
nalyzer b
u
ild time
commit
|
commitdiff
|
tree
2019-08-22
M
a
r
k Abraham
Fix release
mat
r
ix
commit
|
commitdiff
|
tree
2019-08-21
Mark Abrah
a
m
Improve
organization of
L
I
N
CS
reporting
commit
|
commitdiff
|
tree
2019-08-20
Mark A
b
ra
h
a
m
Appl
y
clang-tidy-8 readability-uppe
r
case-literal-suffix
commit
|
commitdiff
|
tree
2019-08-20
Mark
Abraham
Use potential-shift as
d
efault
modifier
commit
|
commitdiff
|
tree
2019-08-20
Mark Abraham
Reduce co
s
ine acceleration quantity prope
r
ly
commit
|
commitdiff
|
tree
2019-08-20
Mark
Abraham
Fix
i
s
s
u
e
s for c
l
ang-analyzer
-
8
commit
|
commitdiff
|
tree
2019-08-19
Mark Abraha
m
Modernize
t
_mat
r
ix,
t
_
m
a
pping, t_rgb
commit
|
commitdiff
|
tree
2019-08-19
Mark Abraham
Modernize t_psdata
commit
|
commitdiff
|
tree
2019-08-16
Mark Abr
a
ham
Update t
e
sting matrices and
f
ix warni
n
gs
commit
|
commitdiff
|
tree
2019-08-16
Mark A
b
raham
Move keyvalu
e
treewriter code
commit
|
commitdiff
|
tree
2019-08-16
Mark
A
b
raham
Stop nbnxm/grid
.
h dependi
n
g on SIMD m
o
dule
commit
|
commitdiff
|
tree
2019-08-15
Mark Abraham
Rem
o
ve run-time
c
heck from calc_shifts
commit
|
commitdiff
|
tree
2019-08-14
Mark Abraham
Fix vv i
n
tegrato
r
s
commit
|
commitdiff
|
tree
2019-08-13
Ma
r
k A
b
r
a
ham
Remove
workaround fo
r
b
uggy cmake
commit
|
commitdiff
|
tree
2019-08-13
M
a
rk Abraham
Fix i
c
c 19 c
o
degen issue
commit
|
commitdiff
|
tree
2019-08-12
Mark Abraham
Quiet warn
i
ng
commit
|
commitdiff
|
tree
2019-08-12
Mark Abraham
Fix
ocl_ker
n
el tar
g
et
commit
|
commitdiff
|
tree
2019-08-08
Mark Abraha
m
Fix estim
a
te of the
s
ize of a j list
commit
|
commitdiff
|
tree
2019-08-08
Mark
Abraham
Ini
t
ialize g
m
x_
e
kindata_t a
n
d
t
_vcm prop
e
rly
commit
|
commitdiff
|
tree
2019-08-08
M
a
rk
Abraham
Stop testing ICC on W
i
ndows
commit
|
commitdiff
|
tree
2019-08-06
Mark Abraha
m
Fix
for MSVC+CUDA
commit
|
commitdiff
|
tree
2019-08-05
Mark Abraham
Add quote
commit
|
commitdiff
|
tree
2019-08-05
Ma
r
k Abraha
m
Re
m
ove libgr
o
macs_
g
ener
a
ted co
n
tributions
f
r
om FindCUDA
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark Abraha
m
M
a
n
age compiler
flags and some
include options per
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark Abraham
Imp
r
ove use of ob
j
ect
l
ibraries i
n
libgr
o
m
a
cs
commit
|
commitdiff
|
tree
2019-08-01
Mark Abrah
a
m
Merge "Me
r
ge rel
e
ase-2019 int
o
m
a
s
t
er"
commit
|
commitdiff
|
tree
2019-07-24
Mark Abra
h
a
m
Remov
e
tes
t
s
of make_unique
commit
|
commitdiff
|
tree
2019-07-23
Mark Abraham
Update developer gui
d
e
commit
|
commitdiff
|
tree
2019-07-16
Mark Ab
r
aham
Add gpubufferops tes
t
matrix
commit
|
commitdiff
|
tree
2019-07-11
Mark Abr
a
ham
Fix
pre-submit b
u
ild
m
atrix and des
c
ription
commit
|
commitdiff
|
tree
2019-07-08
Mark A
b
raham
Fix
hwloc and sphinx
det
e
ction
commit
|
commitdiff
|
tree
2019-07-08
M
ark Abraham
T
e
s
t s
p
ecif
i
c hwloc versio
n
s
commit
|
commitdiff
|
tree
2019-07-05
Mark Abraham
Improv
e
t
ests
of index block const
r
uction
commit
|
commitdiff
|
tree
2019-07-05
Mark Abrah
a
m
Modernize FindHwloc
.
cmake
commit
|
commitdiff
|
tree
2019-07-04
M
a
rk
A
braham
Furt
h
e
r
clan
g
-tidy-7
fi
x
commit
|
commitdiff
|
tree
2019-07-04
M
a
rk A
b
raham
Fix
cl
a
ng-tidy-7 issues
commit
|
commitdiff
|
tree
2019-07-03
Mark A
b
rah
a
m
R
e
o
rder opti
o
ns
commit
|
commitdiff
|
tree
2019-07-02
M
a
rk Abraham
Clarif
y
wording of release
note
s
commit
|
commitdiff
|
tree
2019-06-18
M
a
rk
A
braham
Move code handli
n
g mdru
n
-g
p
u_id to t
a
sk
a
ssignment
.
.
.
commit
|
commitdiff
|
tree
2019-06-12
Ma
r
k Abraham
Fix pygments
detection for sphinx for
d
ocs bu
i
ld
commit
|
commitdiff
|
tree
2019-06-11
Ma
r
k Abr
a
ham
Use RAII appr
o
aches for hardware info
r
matio
n
d
etecti
o
n
commit
|
commitdiff
|
tree
2019-06-11
Mark A
b
raham
Clean up multisim,
c
o
m
munication, and REMD code
commit
|
commitdiff
|
tree
2019-06-11
Mark
Abraham
Init
i
a
l
ize al
l
o
f
gmx_domdec_com
m
_t
commit
|
commitdiff
|
tree
2019-05-24
Mark Abrah
a
m
Re
o
rd
e
r
code befor
e
thr
e
a
d
-MPI spawns
threads
commit
|
commitdiff
|
tree
2019-05-23
Mark
Abra
h
a
m
Teach ArrayRefWithPadding to make a const fl
a
v
o
ur
commit
|
commitdiff
|
tree
2019-05-23
Ma
r
k Abraham
Revert "Fixed dv
d
lambda for
SHAKE + FE"
commit
|
commitdiff
|
tree
2019-05-22
Mark Abraham
Rewrite
s
ta
r
ting behavior
commit
|
commitdiff
|
tree
2019-05-22
Mark A
b
raham
Introduce tri-st
a
t
e
enum
s
for restarts
commit
|
commitdiff
|
tree
2019-05-22
Ma
r
k A
b
raham
Move
f
u
n
ctio
n
a
lity to mdrunutility
commit
|
commitdiff
|
tree
2019-05-20
Mark Abr
a
h
a
m
Fix
equatio
n
typ
o
commit
|
commitdiff
|
tree
2019-05-14
M
a
rk
Abraham
Updat
e
i
n
frastructure needed for restart
rewrite
commit
|
commitdiff
|
tree
2019-05-08
Mark Abr
a
ha
m
Pr
o
vide ho
o
k for forks of GROMACS to d
e
scribe them
s
elv
e
s
commit
|
commitdiff
|
tree
2019-05-07
Mar
k
Abraham
P
rovide better he
l
p for
using l
i
bc++
commit
|
commitdiff
|
tree
2019-05-07
Mark Ab
r
aham
Add an
e
xam
p
le of using an MPI
wrapper compi
l
er
commit
|
commitdiff
|
tree
next