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Stop testing that hwloc cache-size detection works properly
2019-11-16
M
a
rk Abraham
Stop tes
t
ing that
h
wloc cache-size detection works
.
.
.
commit
|
commitdiff
|
tree
2019-10-31
Mark Abra
h
a
m
Te
s
ts for valid perio
d
ic
acti
o
n
s
commit
|
commitdiff
|
tree
2019-10-13
Mark Abr
a
ham
E
n
sur
e
environment variable
u
s
e
doe
s
no
t
give warnings
commit
|
commitdiff
|
tree
2019-10-07
Mark Abraham
Extend GPU traits c
l
as
s
commit
|
commitdiff
|
tree
2019-10-04
M
a
rk
A
br
a
ha
m
Fi
x
that te
s
ts
in
t
ended for multiple rank
s
run that way
commit
|
commitdiff
|
tree
2019-10-02
Mar
k
A
br
a
ha
m
Improve PME
testing
commit
|
commitdiff
|
tree
2019-10-01
Ma
r
k
A
braham
Mo
v
e
G
PU task ass
i
gnme
n
t
commit
|
commitdiff
|
tree
2019-10-01
Mark
Abraham
F
i
x i
c
c warnings
commit
|
commitdiff
|
tree
2019-10-01
Mark Abraham
Removed dependen
c
y on c
o
mmre
c
of m
d
r
u
n setu
p
commit
|
commitdiff
|
tree
2019-09-30
Mark
A
brah
a
m
M
ake a
b
uild
e
r for DD
commit
|
commitdiff
|
tree
2019-09-27
Mark
Abraham
Impro
v
e MiMiC test implemen
t
ation
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Stop chec
k
in
g
CUDA
v
ersion reported b
y
nvcc
commit
|
commitdiff
|
tree
2019-09-27
M
a
r
k
Abraham
Fix gro file
output with index groups
commit
|
commitdiff
|
tree
2019-09-27
Mark A
b
r
aham
A
d
d tests for editconf fi
l
e
c
on
v
e
r
s
ion with i
n
dex
i
ng
commit
|
commitdiff
|
tree
2019-09-27
Mar
k
Abraham
F
i
x gro file
o
u
t
put with inde
x
groups
commit
|
commitdiff
|
tree
2019-09-27
Mark Abr
a
h
am
Remove leftover suppor
t
for
pre-9
.
0
C
UDA
commit
|
commitdiff
|
tree
2019-09-25
Mark Abraham
F
i
x
log file
f
lag output
commit
|
commitdiff
|
tree
2019-09-24
Mark Abraham
Fix
no
-
MPI CUD
A
build
commit
|
commitdiff
|
tree
2019-09-24
Mar
k
Abrah
a
m
Merge "Me
r
ge branch release-2019 into ma
s
ter"
commit
|
commitdiff
|
tree
2019-09-24
Mark Abraham
Fi
x
clang unused
-
f
unction warnings
commit
|
commitdiff
|
tree
2019-09-23
Mark A
b
raham
Fixes t
o
broken CU
D
A co
m
piler flags
commit
|
commitdiff
|
tree
2019-09-23
Mark
A
b
raham
Fix 1D-1pulse su
p
p
o
rt
commit
|
commitdiff
|
tree
2019-09-20
Mark
Abraham
Refactor t
o
c
reate a GpuTaskA
s
s
ignments object
commit
|
commitdiff
|
tree
2019-09-19
Mark
Abraham
Use GPU h
a
lo excha
n
ge only when com
p
at
i
ble DD is available
commit
|
commitdiff
|
tree
2019-09-19
Mark
A
br
a
h
am
Further improve getDDGri
d
Setu
p
commit
|
commitdiff
|
tree
2019-09-16
M
ark
Abraham
Avoid
s
ho
r
t-r
a
ng
e
GPU operations
w
ith no wor
k
commit
|
commitdiff
|
tree
2019-09-12
M
a
r
k Abraham
Disa
b
le
r
eport
-
methods end-t
o
-end test
commit
|
commitdiff
|
tree
2019-09-11
Mark Abrah
a
m
Make gmx_multisim_t a C+
+
object
commit
|
commitdiff
|
tree
2019-09-11
M
ark Abrah
a
m
Fix m
u
lti-sim restart handling in corner
c
ases
commit
|
commitdiff
|
tree
2019-09-10
M
ark Abra
h
am
A
void w
a
rning
in
n
o-m
p
i
b
u
ild
commit
|
commitdiff
|
tree
2019-09-10
Mark Abrah
a
m
Use mo
r
e RAII
seman
t
i
cs with t_co
m
mrec
commit
|
commitdiff
|
tree
2019-09-06
Mark A
b
r
aha
m
Clean up commr
e
c unifo
r
mly
commit
|
commitdiff
|
tree
2019-09-05
Mark Abraham
U
p
d
a
te
m
drun test comparison i
n
frast
r
ucture
commit
|
commitdiff
|
tree
2019-09-03
Mark Abrah
a
m
S
i
mplif
y
energy-f
i
le compariso
n
s in tests
commit
|
commitdiff
|
tree
2019-09-02
M
ark
A
braham
Move initialization o
f
clFFT
commit
|
commitdiff
|
tree
2019-08-30
Ma
r
k Abra
h
am
F
i
x build matri
c
es
commit
|
commitdiff
|
tree
2019-08-29
Mark Abraham
More
quot
e
s
commit
|
commitdiff
|
tree
2019-08-28
Mark
Abraham
F
ix integr
a
tion issues
commit
|
commitdiff
|
tree
2019-08-28
M
a
rk Abraham
Improv
e
d
usability of gro
m
pp
b
y rejectin
g
mo
r
e
i
nvali
d
.
.
.
commit
|
commitdiff
|
tree
2019-08-27
M
a
rk Abraham
A
dd integration tests for exact
restarts
commit
|
commitdiff
|
tree
2019-08-26
Mark Ab
r
aham
M
a
k
e FEP rerun tests
cover the int
e
nded lam
b
da
s
pace
commit
|
commitdiff
|
tree
2019-08-26
Mar
k
Abraham
Converted a CUDA
config to use cl
a
n
g host-only c
o
mpilation
commit
|
commitdiff
|
tree
2019-08-26
Mark Abraham
Fix pai
r
list bug
commit
|
commitdiff
|
tree
2019-08-23
Mark
A
b
r
aha
m
Up
d
a
te clang-tidy to clang
version 8
commit
|
commitdiff
|
tree
2019-08-22
M
a
r
k Abra
h
am
Merge branch releas
e
-2019
commit
|
commitdiff
|
tree
2019-08-22
Mark Abraham
Impro
v
e clang
-
analyzer build time
commit
|
commitdiff
|
tree
2019-08-22
Mark Abrah
a
m
Fix release matrix
commit
|
commitdiff
|
tree
2019-08-21
Mark Abraham
Improve organization of LIN
C
S rep
o
rting
commit
|
commitdiff
|
tree
2019-08-20
M
a
r
k Abraham
Ap
p
ly clang-tidy-8 readability-uppercase-l
i
t
e
ral-su
f
fix
commit
|
commitdiff
|
tree
2019-08-20
Mark Ab
r
a
h
am
Use p
o
tential-s
h
ift
as defaul
t
mo
d
ifier
commit
|
commitdiff
|
tree
2019-08-20
Ma
r
k Abraham
Redu
c
e
c
osi
n
e acceleratio
n
quantity pr
o
p
e
r
ly
commit
|
commitdiff
|
tree
2019-08-20
Mark Abraham
Fix issues for clang-anal
y
zer-
8
commit
|
commitdiff
|
tree
2019-08-19
M
a
rk Abraham
M
odernize t_mat
r
ix, t_mapping, t_rgb
commit
|
commitdiff
|
tree
2019-08-19
Mark Ab
r
aham
Mod
e
rnize t_psdata
commit
|
commitdiff
|
tree
2019-08-16
Mark Ab
r
aham
Update
t
esting matrices and
fix warni
n
g
s
commit
|
commitdiff
|
tree
2019-08-16
M
a
rk Abraham
M
ove k
e
yvaluetr
e
ewriter
code
commit
|
commitdiff
|
tree
2019-08-16
Mark Abraham
St
o
p nbnx
m
/g
r
i
d
.
h depending on SIMD module
commit
|
commitdiff
|
tree
2019-08-15
Mark Abrah
a
m
Remove run
-
time check
from calc_shifts
commit
|
commitdiff
|
tree
2019-08-14
Mark Abraham
F
i
x vv integ
r
ators
commit
|
commitdiff
|
tree
2019-08-13
Mark
A
braham
Remove
wor
k
around f
o
r buggy
c
m
a
ke
commit
|
commitdiff
|
tree
2019-08-13
Mark Abraham
Fix icc
1
9
cod
e
gen issue
commit
|
commitdiff
|
tree
2019-08-12
Ma
r
k Abrah
a
m
Quiet warning
commit
|
commitdiff
|
tree
2019-08-12
Mark Abraham
Fix ocl_kerne
l
targe
t
commit
|
commitdiff
|
tree
2019-08-08
Ma
r
k
Abraham
Fix e
s
t
i
mate o
f
the size of
a
j
lis
t
commit
|
commitdiff
|
tree
2019-08-08
M
a
rk Abraham
I
n
itialize gmx_eki
n
data_t and
t_vcm properly
commit
|
commitdiff
|
tree
2019-08-08
Mark Abraham
Sto
p
t
esting
I
CC on Windows
commit
|
commitdiff
|
tree
2019-08-06
Mark
Abr
a
h
a
m
Fix for
MSVC+CUDA
commit
|
commitdiff
|
tree
2019-08-05
Mark Abraham
Add quote
commit
|
commitdiff
|
tree
2019-08-05
M
a
rk Abra
h
am
Remov
e
libgromacs_g
e
nera
t
ed contributions from Fin
d
C
UDA
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark Abraha
m
Ma
n
age compiler flags and some include op
t
ions per
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark A
b
raham
Improve use of
o
bje
c
t libra
r
ies in
l
i
b
gromacs
commit
|
commitdiff
|
tree
2019-08-01
Mark
Abraham
M
erge "
M
erge release-2019
into
m
a
s
t
er"
commit
|
commitdiff
|
tree
2019-07-24
Mark Abraham
R
e
move tests of m
a
ke_unique
commit
|
commitdiff
|
tree
2019-07-23
Mark Abraham
Up
d
ate developer guide
commit
|
commitdiff
|
tree
2019-07-16
M
a
rk A
b
raham
Add
g
p
ubufferops test ma
t
rix
commit
|
commitdiff
|
tree
2019-07-11
Mark Abraham
Fix pr
e
-submit
b
u
i
ld ma
t
rix and descripti
o
n
commit
|
commitdiff
|
tree
2019-07-08
Mark Abraha
m
Fix
h
wloc
and sphinx de
t
ection
commit
|
commitdiff
|
tree
2019-07-08
Mark Abra
h
am
Test spec
i
f
i
c hwloc vers
i
ons
commit
|
commitdiff
|
tree
2019-07-05
Mark A
b
raham
Improve test
s
o
f index bl
o
ck
c
onstruction
commit
|
commitdiff
|
tree
2019-07-05
Mark Abra
h
a
m
M
odernize Fi
n
dHwlo
c
.
cmake
commit
|
commitdiff
|
tree
2019-07-04
Mark Abraham
Further
c
lang-tidy
-
7 fi
x
commit
|
commitdiff
|
tree
2019-07-04
Mark
A
b
raham
Fi
x
clang
-
tidy-7 i
s
sues
commit
|
commitdiff
|
tree
2019-07-03
Mark
A
b
rah
a
m
Reorder options
commit
|
commitdiff
|
tree
2019-07-02
Mark Abraham
Clarify wording of
r
elease notes
commit
|
commitdiff
|
tree
2019-06-18
Mark Ab
r
aham
Mo
v
e code
h
a
n
d
ling md
r
un -gpu_i
d
to ta
s
kassignment
.
.
.
commit
|
commitdiff
|
tree
2019-06-12
Mark Abraham
Fix pygment
s
detection fo
r
sphinx fo
r
docs build
commit
|
commitdiff
|
tree
2019-06-11
M
a
rk Abraham
U
s
e RAII
a
pproaches for
h
ar
d
ware information d
e
tection
commit
|
commitdiff
|
tree
2019-06-11
Mark A
b
raham
Clean u
p
multisim,
communi
c
ation, and REMD code
commit
|
commitdiff
|
tree
2019-06-11
Mark Abraham
Initiali
z
e all of gmx_
d
o
mdec_comm_t
commit
|
commitdiff
|
tree
2019-05-24
Mark A
b
raham
R
e
o
rder code bef
o
re
t
hre
a
d-MPI spawns
threads
commit
|
commitdiff
|
tree
2019-05-23
Ma
r
k Ab
r
aham
T
e
a
c
h ArrayRefWithPadding to
make a const flavo
u
r
commit
|
commitdiff
|
tree
2019-05-23
Mark Abraham
Revert "Fixed dvdlamb
d
a for SHA
K
E +
F
E
"
commit
|
commitdiff
|
tree
2019-05-22
Mark Abrah
a
m
Rewrite st
a
rting b
e
havior
commit
|
commitdiff
|
tree
2019-05-22
Mar
k
Abraham
I
n
trodu
c
e tri-s
t
ate enu
m
s
for restarts
commit
|
commitdiff
|
tree
2019-05-22
Mark
A
br
a
ham
Mo
v
e
functio
n
ality to m
d
r
unutility
commit
|
commitdiff
|
tree
2019-05-20
Mark Abrah
a
m
Fix equation typo
commit
|
commitdiff
|
tree
2019-05-14
Mark
Abraham
Update
i
nfrast
r
ucture n
e
eded for res
t
art rewrite
commit
|
commitdiff
|
tree
2019-05-08
Mark Abraham
Provide hook f
o
r for
k
s of
GROMACS
t
o des
c
ribe
t
h
emselv
e
s
commit
|
commitdiff
|
tree
2019-05-07
Mark
Abra
h
am
Provide b
e
tter help for using
libc++
commit
|
commitdiff
|
tree
2019-05-07
Mark
Abrah
a
m
Add
a
n exa
m
ple of
u
sing
a
n
MPI
w
rappe
r
compiler
commit
|
commitdiff
|
tree
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