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Avoid 386 O3 codegen bug even more
2019-12-31
Mark Abra
h
am
A
v
o
id 386 O3 codege
n
bu
g
even mor
e
commit
|
commitdiff
|
tree
2019-12-30
Mark A
b
rah
a
m
T
e
sts that verify serializer
b
ehaviours
commit
|
commitdiff
|
tree
2019-12-30
Mar
k
Abra
h
am
Re
m
o
v
e
u
se of tuple i
n
LINC
S
code for GPU implementatio
n
commit
|
commitdiff
|
tree
2019-12-28
M
a
r
k Abra
h
am
M
er
g
e "Merge orig
i
n/release-2
0
19 i
n
t
o release-
2
020
.
.
.
commit
|
commitdiff
|
tree
2019-12-17
Mark Abraham
Fix
t
hat test
s
i
n
te
n
ded for multiple ranks run that way
commit
|
commitdiff
|
tree
2019-12-14
Mark Abraham
Simplify gmxapi RPATH
h
andling
commit
|
commitdiff
|
tree
2019-12-11
Mark A
b
raham
Document DOM
A
INDECOMP
(
cr)
c
orre
c
tly
commit
|
commitdiff
|
tree
2019-12-10
M
a
rk Abra
h
a
m
S
i
mpl
i
fy
g
mx
a
pi
RPATH handl
i
n
g
commit
|
commitdiff
|
tree
2019-12-06
Mark Abraham
A
v
o
i
d 386 O3 codegen
bug
commit
|
commitdiff
|
tree
2019-12-06
M
a
rk Abraham
Provide
m
ore feedback when listed
forces tests fail
commit
|
commitdiff
|
tree
2019-12-04
Mar
k
Abraham
Added OpenCL
b
uild to
r
eleas
e
matrix
commit
|
commitdiff
|
tree
2019-12-04
M
a
rk
Abraham
R
e
moved un
n
eces
s
ary lin
k
_directori
e
s command f
o
r gt
e
st
commit
|
commitdiff
|
tree
2019-12-01
Mark
A
b
raham
Furth
e
r improve taskassignment exception h
a
ndling
commit
|
commitdiff
|
tree
2019-11-29
Mark Abraham
M
erge
b
ranch release-2019 into releas
e
-2020
commit
|
commitdiff
|
tree
2019-11-27
Mark Abrah
a
m
D
i
s
able GPU PME-PP
c
o
mmunic
a
ti
o
n wi
t
h mdru
n
-pmefft cpu
commit
|
commitdiff
|
tree
2019-11-26
M
a
rk Abraha
m
I
m
pro
v
e
h
andling of task-assignment
exceptions
commit
|
commitdiff
|
tree
2019-11-26
Mark Abraha
m
Relax to
l
erance for
b
d
t
e
sts
commit
|
commitdiff
|
tree
2019-11-21
Mark Abr
a
ham
N
ew cool
quo
t
e
commit
|
commitdiff
|
tree
2019-11-20
M
a
rk Abrah
a
m
Quiet uninit
i
alized
v
a
riabl
e
warning with clang
9
commit
|
commitdiff
|
tree
2019-11-19
Mark Abraham
Updated rele
a
se not
e
s
f
or
C
O
D
ATA update
commit
|
commitdiff
|
tree
2019-11-16
Mark Abraha
m
Relaxed listed forces test
t
ole
r
ances
commit
|
commitdiff
|
tree
2019-11-16
Mark Abraham
Stop testing that hwloc cach
e
-size detectio
n
w
o
rks
.
.
.
commit
|
commitdiff
|
tree
2019-10-31
Mark Abr
a
h
a
m
Tests
f
or va
l
id
periodic actions
commit
|
commitdiff
|
tree
2019-10-13
Mark
Abraham
Ensure environme
n
t variable use doe
s
not
g
i
v
e
w
a
r
n
ings
commit
|
commitdiff
|
tree
2019-10-07
Mark A
b
raham
E
x
t
e
n
d GPU tr
a
i
t
s class
commit
|
commitdiff
|
tree
2019-10-04
Mark A
b
r
aham
Fix that te
s
ts int
e
nded for
multip
l
e ranks run that way
commit
|
commitdiff
|
tree
2019-10-02
Mark A
b
raham
Improve PME testing
commit
|
commitdiff
|
tree
2019-10-01
Mark Abraham
Move GPU task
a
ssi
g
n
men
t
commit
|
commitdiff
|
tree
2019-10-01
Mark Abr
a
h
a
m
F
ix
ic
c
wa
r
nings
commit
|
commitdiff
|
tree
2019-10-01
Mark Abraham
Removed
d
ep
e
n
dency on commrec
o
f mdrun setup
commit
|
commitdiff
|
tree
2019-09-30
Mark Abraham
Mak
e
a
b
u
i
lder for DD
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Improve MiMiC
t
est implemen
t
ation
commit
|
commitdiff
|
tree
2019-09-27
Ma
r
k
Abraham
Stop check
i
ng CUDA version reported by nvc
c
commit
|
commitdiff
|
tree
2019-09-27
Mark
Abraham
Fix gro
f
ile output with index gro
u
ps
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Add tests f
o
r
e
ditconf fi
l
e
co
n
version with index
i
ng
commit
|
commitdiff
|
tree
2019-09-27
Mark
A
b
raham
Fix gro file output with index groups
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraha
m
Remove le
f
t
over support fo
r
pre-9
.
0 CUD
A
commit
|
commitdiff
|
tree
2019-09-25
Mark Abrah
a
m
F
ix log file fla
g
o
u
t
put
commit
|
commitdiff
|
tree
2019-09-24
Mark Abraham
Fix no-MPI CUDA build
commit
|
commitdiff
|
tree
2019-09-24
Mark Abraham
Merge "Merge b
r
anch r
e
l
eas
e
-
2019 into mast
e
r"
commit
|
commitdiff
|
tree
2019-09-24
Mark Abra
h
a
m
Fix cl
a
n
g
unused-function warnings
commit
|
commitdiff
|
tree
2019-09-23
Mark Abraham
Fixes to b
r
oken
CUD
A
co
m
piler flags
commit
|
commitdiff
|
tree
2019-09-23
M
a
rk Abraham
Fix 1D-1p
u
l
se su
p
port
commit
|
commitdiff
|
tree
2019-09-20
M
ark A
b
raham
R
e
f
act
o
r to
creat
e
a
G
puTaskAssignments object
commit
|
commitdiff
|
tree
2019-09-19
Mark A
b
raham
Use G
P
U ha
l
o exchange only when compatible DD is ava
i
l
able
commit
|
commitdiff
|
tree
2019-09-19
Mark Abrah
a
m
Further improve g
e
tDDGridSe
t
up
commit
|
commitdiff
|
tree
2019-09-16
Ma
r
k Abr
a
h
am
Avoid short-range GPU op
e
rations
w
ith n
o
wo
r
k
commit
|
commitdiff
|
tree
2019-09-12
M
ark Abraham
Disable
r
eport-methods end-to-end
t
e
s
t
commit
|
commitdiff
|
tree
2019-09-11
Ma
r
k Abraham
Make
g
mx_multisim_t a C++ object
commit
|
commitdiff
|
tree
2019-09-11
Mark Abra
h
a
m
F
i
x
mu
l
ti-sim
r
estart handli
n
g in corner cases
commit
|
commitdiff
|
tree
2019-09-10
Mark A
b
raham
Avoid warning
in no-mpi build
commit
|
commitdiff
|
tree
2019-09-10
Mark A
b
r
a
ham
Use more RAII
semantics wi
t
h t_com
m
rec
commit
|
commitdiff
|
tree
2019-09-06
Mark Abraham
Clean up commrec uniform
l
y
commit
|
commitdiff
|
tree
2019-09-05
Ma
r
k
Ab
r
ah
a
m
Up
d
a
te
m
dr
u
n
test comparison infrastructure
commit
|
commitdiff
|
tree
2019-09-03
M
a
r
k Abraham
Simpl
i
fy
energy-
f
i
l
e compari
s
ons in tests
commit
|
commitdiff
|
tree
2019-09-02
Mark Abraham
Move in
i
tia
l
i
z
ation o
f
clFFT
commit
|
commitdiff
|
tree
2019-08-30
Mark Abraham
Fi
x
build matrices
commit
|
commitdiff
|
tree
2019-08-29
Mark Abra
h
am
More quotes
commit
|
commitdiff
|
tree
2019-08-28
Mark Abraham
Fix integration
issues
commit
|
commitdiff
|
tree
2019-08-28
Mark Abra
h
am
I
m
pr
o
ved usabil
i
ty o
f
g
rompp b
y
rej
e
ct
i
n
g
more invalid
.
.
.
commit
|
commitdiff
|
tree
2019-08-27
Mark Ab
r
aham
Add integration tests for exact restarts
commit
|
commitdiff
|
tree
2019-08-26
Mark Abraham
Make FEP rerun tes
t
s cove
r
the intended lambda space
commit
|
commitdiff
|
tree
2019-08-26
Mark Abraham
Converted a CUDA conf
i
g to use clang host-only comp
i
lation
commit
|
commitdiff
|
tree
2019-08-26
Mark Abr
a
ham
Fix
pair
l
i
st
b
ug
commit
|
commitdiff
|
tree
2019-08-23
M
ark Abrah
a
m
Update cl
a
n
g
-tidy to clang version 8
commit
|
commitdiff
|
tree
2019-08-22
Mark Abrah
a
m
Merge branch r
e
l
ease-2
0
19
commit
|
commitdiff
|
tree
2019-08-22
Mark
Abraham
Improve clang-analyzer build ti
m
e
commit
|
commitdiff
|
tree
2019-08-22
Mark Ab
r
aham
F
i
x rel
e
ase
m
atrix
commit
|
commitdiff
|
tree
2019-08-21
Mark Abraham
Improve o
r
ganizat
i
o
n of
L
INCS r
e
porting
commit
|
commitdiff
|
tree
2019-08-20
M
ark A
b
raham
Apply clang-ti
d
y-8 reada
b
ility-upperc
a
se-
l
i
teral-suffix
commit
|
commitdiff
|
tree
2019-08-20
Ma
r
k
Abraham
U
s
e
potential-shift as defau
l
t modifier
commit
|
commitdiff
|
tree
2019-08-20
Mark Abraham
Reduce
c
osine acceleration qu
a
ntity properly
commit
|
commitdiff
|
tree
2019-08-20
Ma
r
k Abraham
F
ix issues for clang-an
a
lyzer-8
commit
|
commitdiff
|
tree
2019-08-19
Mark A
b
raham
Mod
e
rni
z
e
t
_matrix,
t
_mapping, t_
r
gb
commit
|
commitdiff
|
tree
2019-08-19
M
ark A
b
r
ah
a
m
Modern
i
ze t_psdata
commit
|
commitdiff
|
tree
2019-08-16
M
a
r
k
A
br
a
h
am
Update testing mat
r
ices a
n
d fi
x
warnings
commit
|
commitdiff
|
tree
2019-08-16
Mark Abr
a
ham
Move k
e
yva
l
u
e
treewriter code
commit
|
commitdiff
|
tree
2019-08-16
Ma
r
k Abrah
a
m
St
o
p n
b
nxm/g
r
id
.
h d
e
pend
i
ng on SIMD
m
o
du
l
e
commit
|
commitdiff
|
tree
2019-08-15
Mark Abraham
R
e
move run-tim
e
check from
c
alc_shifts
commit
|
commitdiff
|
tree
2019-08-14
M
ark A
b
raham
Fix vv integr
a
t
o
rs
commit
|
commitdiff
|
tree
2019-08-13
M
a
rk Abraham
Re
m
ove workaround fo
r
buggy
cmake
commit
|
commitdiff
|
tree
2019-08-13
Mark Abra
h
am
Fix icc
1
9 c
o
degen i
s
sue
commit
|
commitdiff
|
tree
2019-08-12
Mark
Abraha
m
Quiet
w
arning
commit
|
commitdiff
|
tree
2019-08-12
Mark Abrah
a
m
Fix o
c
l_kernel target
commit
|
commitdiff
|
tree
2019-08-08
Mark Abraham
Fix
e
s
timate of the siz
e
of
a
j list
commit
|
commitdiff
|
tree
2019-08-08
M
ark Abraham
I
nitialize gmx_ekindat
a
_t an
d
t_vc
m
properl
y
commit
|
commitdiff
|
tree
2019-08-08
Mar
k
Abr
a
ham
S
t
op t
e
sting ICC on Windows
commit
|
commitdiff
|
tree
2019-08-06
Mark A
b
r
aham
Fix for MSVC+CUDA
commit
|
commitdiff
|
tree
2019-08-05
Mark Abraham
Add quote
commit
|
commitdiff
|
tree
2019-08-05
Mark Abraha
m
Remove l
i
bgromacs_generat
e
d contributi
o
ns
f
rom FindCUDA
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark Abraham
Ma
n
age compiler flags and
some
incl
u
de options per
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
M
a
r
k
A
braham
Impro
v
e
use of object l
i
bra
r
ies in libgr
o
macs
commit
|
commitdiff
|
tree
2019-08-01
M
a
rk A
b
r
ah
a
m
Merge "Merge release
-
2019 into master"
commit
|
commitdiff
|
tree
2019-07-24
Ma
r
k Abraham
R
em
o
ve tes
t
s of make_unique
commit
|
commitdiff
|
tree
2019-07-23
Mark Abraham
Update d
e
velope
r
g
uide
commit
|
commitdiff
|
tree
2019-07-16
Mark
A
braha
m
Add gpubuffero
p
s tes
t
ma
t
rix
commit
|
commitdiff
|
tree
2019-07-11
M
ark A
b
r
a
ham
Fix pre-submit bu
i
l
d
matrix and
descri
p
tion
commit
|
commitdiff
|
tree
2019-07-08
M
a
rk
A
braham
Fix
h
w
l
o
c
and
s
phinx d
e
tection
commit
|
commitdiff
|
tree
2019-07-08
Ma
r
k Abr
a
ham
T
e
st specific
h
wloc v
e
r
sions
commit
|
commitdiff
|
tree
2019-07-05
M
a
r
k
Abraham
Improve te
s
ts
o
f
i
nd
e
x bloc
k
cons
t
ruction
commit
|
commitdiff
|
tree
next