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2019-06-11	Mark Abraham	Use RAII approaches for hardware information detection	commit \| commitdiff \| tree
2019-06-11	Mark Abraham	Clean up multisim, communication, and REMD code	commit \| commitdiff \| tree
2019-05-24	Mark Abraham	Reorder code before thread-MPI spawns threads	commit \| commitdiff \| tree
2019-05-23	Mark Abraham	Teach ArrayRefWithPadding to make a const flavour	commit \| commitdiff \| tree
2019-05-22	Mark Abraham	Rewrite starting behavior	commit \| commitdiff \| tree
2019-05-22	Mark Abraham	Introduce tri-state enums for restarts	commit \| commitdiff \| tree
2019-05-22	Mark Abraham	Move functionality to mdrunutility	commit \| commitdiff \| tree
2019-05-14	Mark Abraham	Update infrastructure needed for restart rewrite	commit \| commitdiff \| tree
2019-05-08	Mark Abraham	Provide hook for forks of GROMACS to describe themselves	commit \| commitdiff \| tree
2019-05-07	Mark Abraham	Provide better help for using libc++	commit \| commitdiff \| tree
2019-05-06	Mark Abraham	Improve how mdrun -noappend names output files	commit \| commitdiff \| tree
2019-05-03	Mark Abraham	More tests for how mdrun -cpi restarts handle files	commit \| commitdiff \| tree
2019-05-02	Mark Abraham	Enhance path search functions	commit \| commitdiff \| tree
2019-04-30	Mark Abraham	Test the output of "gmx mdrun help"	commit \| commitdiff \| tree
2019-04-25	Mark Abraham	Update style guide about class enums	commit \| commitdiff \| tree
2019-04-23	Mark Abraham	Clarify pushing of interaction types	commit \| commitdiff \| tree
2019-04-23	Mark Abraham	Updated clang -Weverything checks to clang-7	commit \| commitdiff \| tree
2019-04-18	Mark Abraham	Create gmx::compat::optional	commit \| commitdiff \| tree
2019-04-18	Mark Abraham	Move pull work struct out of inputrec	commit \| commitdiff \| tree
2019-04-18	Mark Abraham	Improve swapcoords session lifetime management	commit \| commitdiff \| tree
2019-04-17	Mark Abraham	Fix post-submit	commit \| commitdiff \| tree
2019-04-16	Mark Abraham	Removed mdrun -gcom	commit \| commitdiff \| tree
2019-04-10	Mark Abraham	Start making IMD and swap model IMDModule	commit \| commitdiff \| tree
2019-04-10	Mark Abraham	Reuse rvecs_differ in InteractiveMD module	commit \| commitdiff \| tree
2019-04-10	Mark Abraham	Make ImdSession into a Pimpl-ed class with factory...	commit \| commitdiff \| tree
2019-04-10	Mark Abraham	Reform IMD module	commit \| commitdiff \| tree
2019-04-03	Mark Abraham	Initial deactivation of group scheme.	commit \| commitdiff \| tree
2019-04-01	Mark Abraham	Move MDModules initialization earlier	commit \| commitdiff \| tree
2019-04-01	Mark Abraham	Move enerdata ownership to mdrunner	commit \| commitdiff \| tree
2019-03-28	Mark Abraham	Move DomdecOptions into its own header	commit \| commitdiff \| tree
2019-03-25	Mark Abraham	Support ArrayRef of EnumerationArray	commit \| commitdiff \| tree
2019-03-25	Mark Abraham	Convert gmx dump to module	commit \| commitdiff \| tree
2019-03-20	Mark Abraham	Clean up mdrun help description	commit \| commitdiff \| tree
2019-03-20	Mark Abraham	Improve mimic module	commit \| commitdiff \| tree
2019-03-19	Mark Abraham	Add support for serializing 32-bit integers	commit \| commitdiff \| tree
2019-03-19	Mark Abraham	Fix clang warning	commit \| commitdiff \| tree
2019-03-19	Mark Abraham	Update ElectricField module	commit \| commitdiff \| tree
2019-03-12	Mark Abraham	Fix memory leak	commit \| commitdiff \| tree
2019-03-07	Mark Abraham	Eliminate mdlib/mdrun.h	commit \| commitdiff \| tree
2019-03-07	Mark Abraham	Remove ineffective code for writing more TER fields...	commit \| commitdiff \| tree
2019-03-07	Mark Abraham	New tests for pdb2gmx and editconf	commit \| commitdiff \| tree
2019-03-06	Mark Abraham	Clean up use of loop indices	commit \| commitdiff \| tree
2019-03-06	Mark Abraham	Revert "Eliminate mdlib/mdrun.h"	commit \| commitdiff \| tree
2019-03-06	Mark Abraham	Eliminate mdlib/mdrun.h	commit \| commitdiff \| tree
2019-03-06	Mark Abraham	Minor modernization in gmx_dump	commit \| commitdiff \| tree
2019-03-05	Mark Abraham	Make pdb2gmx tests run in Jenkins	commit \| commitdiff \| tree
2019-03-02	Mark Abraham	Merge branch release-2019	commit \| commitdiff \| tree
2019-03-02	Mark Abraham	Remove defunct mdrun options	commit \| commitdiff \| tree
2019-02-27	Mark Abraham	Keep niche CMake variables as advanced	commit \| commitdiff \| tree
2019-02-27	Mark Abraham	Remove minor broken functionality in gmx bar	commit \| commitdiff \| tree
2019-02-26	Mark Abraham	Add new line to trjconv notice to users	commit \| commitdiff \| tree
2019-02-25	Mark Abraham	Move code out of sim_util.cpp	commit \| commitdiff \| tree
2019-02-25	Mark Abraham	De-duplicate gmx_tmpnam and gmx_fopen_temporary	commit \| commitdiff \| tree
2019-02-15	Mark Abraham	Improved diagnostics when PME cannot run on GPUs	commit \| commitdiff \| tree
2019-02-14	Mark Abraham	Fix use of selections referring to index groups	commit \| commitdiff \| tree
2019-02-14	Mark Abraham	Revert changes to implementation of insert-molecules...	commit \| commitdiff \| tree
2019-02-13	Mark Abraham	Improved electric-field docs	commit \| commitdiff \| tree
2019-02-13	Mark Abraham	Make EnergyOutput wrapper class	commit \| commitdiff \| tree
2019-02-13	Mark Abraham	Reduce coupling to paddedvector.h	commit \| commitdiff \| tree
2019-02-12	Mark Abraham	Quiet clang warning	commit \| commitdiff \| tree
2019-02-12	Mark Abraham	Remove gmx::Regex	commit \| commitdiff \| tree
2019-02-08	Mark Abraham	Fix Intel compiler warning	commit \| commitdiff \| tree
2019-02-08	Mark Abraham	Remove copy_energy from energy-writing steps	commit \| commitdiff \| tree
2019-02-08	Mark Abraham	Reform energy output tests	commit \| commitdiff \| tree
2019-02-04	Mark Abraham	Remove SIMD support from group scheme	commit \| commitdiff \| tree
2019-01-30	Mark Abraham	Merge remote branch release-2018 into release-2019	commit \| commitdiff \| tree
2019-01-30	Mark Abraham	Fix release notes issue links	commit \| commitdiff \| tree
2019-01-30	Mark Abraham	Fix release notes issue links	commit \| commitdiff \| tree
2019-01-28	Mark Abraham	Stop trying to check nvcc on Windows	commit \| commitdiff \| tree
2019-01-28	Mark Abraham	Bump CUDA requirement to 9.0	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Require clang 3.6	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Fix post-submit build	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Unify regex implementation	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Bump required gcc compiler to 5.1	commit \| commitdiff \| tree
2019-01-25	Mark Abraham	Use native cmake C++11 support	commit \| commitdiff \| tree
2019-01-22	Mark Abraham	Remove init_md and improve init_em	commit \| commitdiff \| tree
2019-01-21	Mark Abraham	Clean up initialize_lambdas	commit \| commitdiff \| tree
2019-01-21	Mark Abraham	Fix trjconv -ndec	commit \| commitdiff \| tree
2019-01-18	Mark Abraham	Disabled internal clFFT when using MSVC with OpenCL	commit \| commitdiff \| tree
2019-01-18	Mark Abraham	Improve nvcc error reporting	commit \| commitdiff \| tree
2019-01-18	Mark Abraham	Remove ctest section called simple	commit \| commitdiff \| tree
2019-01-16	Mark Abraham	Migrate test configuration off bs_mac	commit \| commitdiff \| tree
2019-01-16	Mark Abraham	Remove several unnecessary things	commit \| commitdiff \| tree
2019-01-15	Mark Abraham	Reverted standard ExternalProject for FFTW download	commit \| commitdiff \| tree
2019-01-14	Mark Abraham	Improve portability of PME on GPU code	commit \| commitdiff \| tree
2019-01-14	Mark Abraham	Remove ctest section called kernel	commit \| commitdiff \| tree
2019-01-14	Mark Abraham	Migrate TPI testing to Verlet scheme	commit \| commitdiff \| tree
2019-01-13	Mark Abraham	Improve use of gmxpreprocess headers	commit \| commitdiff \| tree
2019-01-11	Mark Abraham	Use enum class for grompp directives	commit \| commitdiff \| tree
2019-01-11	Mark Abraham	Fix typo in release notes	commit \| commitdiff \| tree
2019-01-11	Mark Abraham	Add helper functionality for safer enumerations	commit \| commitdiff \| tree
2019-01-10	Mark Abraham	Add more checks for division by zero	commit \| commitdiff \| tree
2019-01-10	Mark Abraham	Add more checks for division by zero	commit \| commitdiff \| tree
2019-01-09	Mark Abraham	Fix eioNames	commit \| commitdiff \| tree
2019-01-08	Mark Abraham	Fix trjconv -ndec	commit \| commitdiff \| tree
2019-01-08	Mark Abraham	Simplify reporting of GPU selection	commit \| commitdiff \| tree
2019-01-07	Mark Abraham	Finish removing group-scheme all-vs-all support	commit \| commitdiff \| tree
2019-01-02	Mark Abraham	Merge branch release-2019	commit \| commitdiff \| tree
2018-12-22	Mark Abraham	Fix unused parameter warning	commit \| commitdiff \| tree
2018-12-10	Mark Abraham	Make only mdrun report process ID	commit \| commitdiff \| tree
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