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Remove GMX_CYCLECOUNTERS
2019-12-28
Mark Abraham
Remove GMX_CYCLE
C
OUNT
E
RS
commit
|
commitdiff
|
tree
2019-12-28
M
ar
k
Abraham
R
emove
s
u
pport for ARMv7
commit
|
commitdiff
|
tree
2019-12-28
Mark Abraham
Stop testing ARMv7
commit
|
commitdiff
|
tree
2019-12-12
Mark Abraham
Merge "Mer
g
e branch 'origin
/
relea
s
e-20
2
0' into master"
commit
|
commitdiff
|
tree
2019-12-06
Mar
k
Abraham
Avoid 386 O3 codegen
b
ug
commit
|
commitdiff
|
tree
2019-12-06
Mark Abraham
Provide mo
r
e feedback
w
hen
l
isted
forces tests fai
l
commit
|
commitdiff
|
tree
2019-12-04
Ma
r
k
A
braham
Ad
d
e
d OpenCL build to rel
e
a
s
e
matrix
commit
|
commitdiff
|
tree
2019-12-04
Mark
A
braham
Removed
unnecessary link_directori
e
s command for gtest
commit
|
commitdiff
|
tree
2019-12-01
Mark Abraham
Further improve t
a
skassign
m
e
n
t exception hand
l
ing
commit
|
commitdiff
|
tree
2019-11-29
Mark Abraham
Merge branc
h
releas
e
-2
0
19 into release-20
2
0
commit
|
commitdiff
|
tree
2019-11-27
Mark Abraham
Disab
l
e GPU PME-PP c
o
mmunication with mdrun -pme
f
ft cpu
commit
|
commitdiff
|
tree
2019-11-26
Mar
k
Abraham
Impro
v
e
hand
l
ing of task
-
as
s
ignme
n
t exceptions
commit
|
commitdiff
|
tree
2019-11-26
Mark Abraham
Re
l
ax tolera
n
ce for
bd tes
t
s
commit
|
commitdiff
|
tree
2019-11-21
Ma
r
k Abra
h
a
m
Mer
g
e branch rel
e
ase-2020
commit
|
commitdiff
|
tree
2019-11-21
Mark A
b
raham
New cool
q
uote
commit
|
commitdiff
|
tree
2019-11-20
Mark Abraham
Q
u
i
et uninitialized
variable warning wi
t
h clang 9
commit
|
commitdiff
|
tree
2019-11-19
M
a
r
k Abrah
a
m
Updated release note
s
fo
r
COD
A
TA update
commit
|
commitdiff
|
tree
2019-11-16
Ma
r
k Ab
r
aham
Rel
a
xed
listed forces tes
t
tolerances
commit
|
commitdiff
|
tree
2019-11-16
M
a
rk Abrah
a
m
Stop te
s
ting
that hwloc cache-size detect
i
on works
.
.
.
commit
|
commitdiff
|
tree
2019-10-31
Mark Abraham
Tests
for valid
periodic action
s
commit
|
commitdiff
|
tree
2019-10-13
Mark Abr
a
ham
Ensure en
v
ironment va
r
iable use do
e
s not
gi
v
e
w
arni
n
gs
commit
|
commitdiff
|
tree
2019-10-07
Mark Abraha
m
Extend GPU traits class
commit
|
commitdiff
|
tree
2019-10-04
Mark Abr
a
ham
Fix
t
hat te
s
ts intended f
o
r
multiple ranks r
u
n t
h
at way
commit
|
commitdiff
|
tree
2019-10-02
Mark Abra
h
am
Improve PME testing
commit
|
commitdiff
|
tree
2019-10-01
Mark A
b
raham
M
o
ve
G
PU task as
s
ignment
commit
|
commitdiff
|
tree
2019-10-01
M
a
rk Abraham
Fi
x
icc warnings
commit
|
commitdiff
|
tree
2019-10-01
Mark
A
b
raham
Removed dependency on c
o
mmrec of mdrun setup
commit
|
commitdiff
|
tree
2019-09-30
Mark Abraham
Make a builder for D
D
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
I
m
prove M
i
MiC test impleme
n
tation
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Stop ch
e
cki
n
g CUD
A
version reported by
n
v
cc
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Fix gro file
ou
t
put with index groups
commit
|
commitdiff
|
tree
2019-09-27
Mark A
b
raham
Add
tests f
o
r edit
c
onf file conv
e
r
s
ion
w
ith indexing
commit
|
commitdiff
|
tree
2019-09-27
Mark Abraham
Fix gro fi
l
e out
p
ut with index gro
u
ps
commit
|
commitdiff
|
tree
2019-09-27
Ma
r
k
Ab
r
aham
Re
m
ove
l
e
ftover
s
upport fo
r
pre-9
.
0
CUDA
commit
|
commitdiff
|
tree
2019-09-25
Ma
r
k Abraham
F
ix log file flag
outpu
t
commit
|
commitdiff
|
tree
2019-09-24
Mark Abraham
Fix
n
o-MPI
C
UDA
b
u
i
ld
commit
|
commitdiff
|
tree
2019-09-24
Mark Abraham
Merge
"Mer
g
e branch r
e
lease-2019 into ma
s
ter"
commit
|
commitdiff
|
tree
2019-09-24
M
a
rk Abraham
Fix clang unused-function
w
arnings
commit
|
commitdiff
|
tree
2019-09-23
Mark Abraham
F
i
xes
to br
o
ken CUDA compiler flags
commit
|
commitdiff
|
tree
2019-09-23
Mark Abra
h
am
Fix 1D-1pulse supp
o
rt
commit
|
commitdiff
|
tree
2019-09-20
Mark Abraha
m
Refactor to
c
reate a G
p
uTaskAssig
n
ment
s
o
bje
c
t
commit
|
commitdiff
|
tree
2019-09-19
Mark A
b
ra
h
am
Use G
P
U
halo excha
n
g
e only
when
c
ompatible D
D
i
s
avai
l
able
commit
|
commitdiff
|
tree
2019-09-19
M
ark
Ab
r
aham
F
urt
h
er improve getDDG
r
i
d
Setup
commit
|
commitdiff
|
tree
2019-09-16
Mark
Abraham
Avoi
d
sh
o
rt-range GPU operations
with n
o
work
commit
|
commitdiff
|
tree
2019-09-12
Mark Abraham
Disabl
e
repo
r
t-methods
end-to
-
e
n
d
t
est
commit
|
commitdiff
|
tree
2019-09-11
Mark Ab
r
aham
Ma
k
e
gmx_multisim_t a C
+
+
object
commit
|
commitdiff
|
tree
2019-09-11
Ma
r
k
A
b
ra
h
am
F
ix multi-sim restart handling in corner cases
commit
|
commitdiff
|
tree
2019-09-10
Mark Abraham
A
v
oid warning in no-mpi build
commit
|
commitdiff
|
tree
2019-09-10
Mark Abraham
Use more RAII sem
a
n
t
ics
with t_commrec
commit
|
commitdiff
|
tree
2019-09-06
M
a
r
k
Abrah
a
m
Clean u
p
com
m
rec uniformly
commit
|
commitdiff
|
tree
2019-09-05
Mark Abraham
Update
m
drun tes
t
c
omparison infrastructure
commit
|
commitdiff
|
tree
2019-09-03
Ma
r
k
Abra
h
a
m
Simpl
i
f
y ener
g
y-file comparisons i
n
t
e
sts
commit
|
commitdiff
|
tree
2019-09-02
Mark
Abraham
Move initializati
o
n o
f
clFFT
commit
|
commitdiff
|
tree
2019-08-30
Ma
r
k Abraham
Fix
b
uild matrices
commit
|
commitdiff
|
tree
2019-08-29
Mark Abraham
M
ore quote
s
commit
|
commitdiff
|
tree
2019-08-28
Mark Abraham
Fix integration issu
e
s
commit
|
commitdiff
|
tree
2019-08-28
M
ark Abraham
Improved usa
b
i
l
ity
o
f
grompp by rejecting more inva
l
i
d
.
.
.
commit
|
commitdiff
|
tree
2019-08-27
Mark Abraham
Add integration tests for
exact restarts
commit
|
commitdiff
|
tree
2019-08-26
Mark Abraham
Make F
E
P
rerun tests
cover the i
n
tended lambda spac
e
commit
|
commitdiff
|
tree
2019-08-26
Mark Abraham
Converted a
C
UDA
c
o
nfig to u
s
e
clan
g
host-only c
o
mpila
t
ion
commit
|
commitdiff
|
tree
2019-08-26
Mark A
b
raham
Fix
pairlist
b
u
g
commit
|
commitdiff
|
tree
2019-08-23
Ma
r
k Abra
h
am
U
pdate clang-tidy to clang version 8
commit
|
commitdiff
|
tree
2019-08-22
Mark
Abraham
Merge b
r
anch releas
e
-2019
commit
|
commitdiff
|
tree
2019-08-22
M
ark Abr
a
ham
Impr
o
ve c
l
a
n
g-analyzer build time
commit
|
commitdiff
|
tree
2019-08-22
Mark Abraham
Fi
x
rele
a
se
m
atrix
commit
|
commitdiff
|
tree
2019-08-21
M
a
rk A
b
raham
I
mprove organization of LINC
S
reportin
g
commit
|
commitdiff
|
tree
2019-08-20
Ma
r
k A
b
r
aham
Apply
clang-tidy-8 reada
b
ili
t
y-
u
ppercase-lit
e
ral-s
u
ffix
commit
|
commitdiff
|
tree
2019-08-20
Mark Abraham
Use potential-
s
hift as d
e
faul
t
modi
f
ier
commit
|
commitdiff
|
tree
2019-08-20
Mar
k
Abraham
R
e
duce cosine accele
r
ation quantity
properl
y
commit
|
commitdiff
|
tree
2019-08-20
Mark Abraham
Fix issu
e
s fo
r
clang-analyzer-8
commit
|
commitdiff
|
tree
2019-08-19
M
ark Abraha
m
Mode
r
ni
z
e t_matrix
,
t
_
mapping, t_rgb
commit
|
commitdiff
|
tree
2019-08-19
Mar
k
Abraham
Modernize t
_
p
sdat
a
commit
|
commitdiff
|
tree
2019-08-16
Mark
A
braham
U
p
d
ate testing matrices and fix
w
arn
i
ngs
commit
|
commitdiff
|
tree
2019-08-16
Mark A
b
raham
Move keyvaluetr
e
ew
r
iter
code
commit
|
commitdiff
|
tree
2019-08-16
Mark Abraham
S
t
op nbnxm/
g
rid
.
h dep
e
nding on SIMD m
o
dul
e
commit
|
commitdiff
|
tree
2019-08-15
Mark Abraham
R
e
move
r
u
n
-t
i
me chec
k
from calc_s
h
ifts
commit
|
commitdiff
|
tree
2019-08-14
M
a
rk Abraham
Fix vv i
n
tegrat
o
rs
commit
|
commitdiff
|
tree
2019-08-13
M
ark Abraha
m
Remove wor
k
a
r
ound for
b
uggy cmake
commit
|
commitdiff
|
tree
2019-08-13
Mark
Abraham
Fix icc 19 codeg
e
n
i
s
sue
commit
|
commitdiff
|
tree
2019-08-12
Mark Abraham
Quiet warning
commit
|
commitdiff
|
tree
2019-08-12
Mark
A
b
raha
m
Fix ocl_kernel
target
commit
|
commitdiff
|
tree
2019-08-08
Mar
k
Abra
h
a
m
Fix estimate of the size of a j list
commit
|
commitdiff
|
tree
2019-08-08
Mark Ab
r
a
ham
Initia
l
i
ze gmx_ekindata_t and
t
_
v
cm p
r
o
perly
commit
|
commitdiff
|
tree
2019-08-08
Mark A
b
rah
a
m
Stop tes
t
ing IC
C
on Windo
w
s
commit
|
commitdiff
|
tree
2019-08-06
M
ark Abraham
Fix fo
r
MSVC+CUD
A
commit
|
commitdiff
|
tree
2019-08-05
M
a
rk Ab
r
aha
m
Add quote
commit
|
commitdiff
|
tree
2019-08-05
Mark Abraham
Remove libgr
o
macs_generated contributions from FindCUDA
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark Abraham
M
an
a
ge comp
i
ler fla
g
s and some include options p
e
r
.
.
.
commit
|
commitdiff
|
tree
2019-08-01
Mark Abraham
Im
p
rove use o
f
object libraries
i
n libgr
o
macs
commit
|
commitdiff
|
tree
2019-08-01
Mark Ab
r
a
h
am
Merge
"Merge
release-2019 i
n
to master"
commit
|
commitdiff
|
tree
2019-07-24
Mark Abraha
m
R
e
move t
e
sts of mak
e
_unique
commit
|
commitdiff
|
tree
2019-07-23
Mark Abraham
Upd
a
te developer guide
commit
|
commitdiff
|
tree
2019-07-16
Mark A
b
raham
A
d
d
gpubuf
f
erops test mat
r
ix
commit
|
commitdiff
|
tree
2019-07-11
Mark Abra
h
am
Fix pre-
s
ub
m
it build matrix and d
e
scription
commit
|
commitdiff
|
tree
2019-07-08
Mark Abraham
Fix hwloc an
d
sphinx
detection
commit
|
commitdiff
|
tree
2019-07-08
Mark
A
braham
Tes
t
s
pecific hwloc versions
commit
|
commitdiff
|
tree
2019-07-05
Mark Abraham
Improve te
s
ts
of i
n
dex block construct
i
o
n
commit
|
commitdiff
|
tree
2019-07-05
Mark Abraham
Mode
r
nize FindHwloc
.
c
make
commit
|
commitdiff
|
tree
2019-07-04
Mark Abr
a
ham
Fu
r
ther clang-tidy-7 fix
commit
|
commitdiff
|
tree
2019-07-04
Mar
k
Abraham
Fix clang-tid
y
-7 issue
s
commit
|
commitdiff
|
tree
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